AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0900400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0900400 MtrunA17_Chr6g0486641 98.152 487 9 0 1 487 1 487 0.0 981
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0900400 AT4G28910.3 40.808 495 186 18 1 469 1 414 3.38e-90 282
Msa0900400 AT4G28910.1 40.808 495 186 18 1 469 1 414 3.38e-90 282
Msa0900400 AT4G28910.2 40.808 495 186 18 1 469 1 414 3.38e-90 282

Find 175 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGCTTCTTTGAATTTAAA+TGG 0.163556 6_1:+95872586 Msa0900400:CDS
CGGGTTCCACCGCTTGATTC+TGG 0.179092 6_1:-95872499 None:intergenic
CAATTTCAATTGGTTTATTA+TGG 0.186789 6_1:-95872633 None:intergenic
TTTAAATGGAAGAGGATTTC+TGG 0.193854 6_1:+95872600 Msa0900400:CDS
CTCAGTTTGGGTTTATCTTT+TGG 0.194235 6_1:+95872352 Msa0900400:CDS
CTGCTTCCTTTCACGTCTTC+AGG 0.217298 6_1:-95873764 None:intergenic
GCATAATGGAAACCTCAATT+AGG 0.218367 6_1:+95870736 Msa0900400:five_prime_UTR
TCAATCCTCTCTCAAATTTC+AGG 0.222904 6_1:+95870765 Msa0900400:five_prime_UTR
TTCAGATAGCAATTCGGTTT+TGG 0.226700 6_1:+95874069 Msa0900400:CDS
TGAAAGAGAGTTGGTGAAAA+AGG 0.226937 6_1:+95871102 Msa0900400:five_prime_UTR
TTTAGCTATTTGATCTGTTT+TGG 0.253800 6_1:+95872278 Msa0900400:five_prime_UTR
CAGTTTCATCCTTCCTTTGC+AGG 0.256187 6_1:+95873264 Msa0900400:CDS
CCTTCACCTTTCGACTGTTC+TGG 0.269268 6_1:-95873812 None:intergenic
TTCACTTGTTGAGCAGAAAA+AGG 0.274328 6_1:-95873027 None:intergenic
GCAAGTAATTAAAGTGAAAT+AGG 0.279259 6_1:-95874261 None:intergenic
ATGGTTCTAAAGGATTCATT+AGG 0.299700 6_1:+95872878 Msa0900400:CDS
GTGGATACCCAAGGCAGATT+TGG 0.307968 6_1:-95873908 None:intergenic
AACCGAATTGCTATCTGAAT+TGG 0.313360 6_1:-95874065 None:intergenic
AAACATGCAAACATGACTTA+TGG 0.318828 6_1:+95873000 Msa0900400:CDS
ATTGTAGTTGTATTTAATAA+TGG 0.334890 6_1:+95874300 Msa0900400:three_prime_UTR
TCCATTCTTACTCTTTGCTT+TGG 0.338919 6_1:-95872386 None:intergenic
CATATTTCTTTAACAGAAGA+TGG 0.341666 6_1:+95872778 Msa0900400:CDS
CATAATGGAAACCTCAATTA+GGG 0.343245 6_1:+95870737 Msa0900400:five_prime_UTR
TAGCGGGCTTGAGCTCAGTT+TGG 0.357348 6_1:+95872339 Msa0900400:CDS
ACTCCAGGTATTTGAGGGCT+TGG 0.360299 6_1:-95873102 None:intergenic
TCAAATGGAAGGACAATATC+AGG 0.363492 6_1:+95873938 Msa0900400:CDS
CAATATCAGGTGTTACTTAC+AGG 0.371934 6_1:+95873951 Msa0900400:CDS
ATGGAAGCTCCTCGGATACT+AGG 0.374951 6_1:+95872404 Msa0900400:CDS
ACGCACAGACGATTCTGATT+TGG 0.379964 6_1:-95873985 None:intergenic
ACGCTGTTTCCCATCACCTT+TGG 0.386142 6_1:-95873714 None:intergenic
GGAAGCTTGCCGATGATGTT+TGG 0.388261 6_1:+95873183 Msa0900400:CDS
TAGCGGGCTTTAGCTCAGTT+TGG 0.389424 6_1:+95872098 Msa0900400:five_prime_UTR
AGCGGGCTTGAGCTCAGTTT+GGG 0.391762 6_1:+95872340 Msa0900400:CDS
CAAAAGAGTCAAACTCTGTT+GGG 0.393194 6_1:+95873076 Msa0900400:CDS
TGTAACATGCAACTGATATA+TGG 0.396162 6_1:+95872168 Msa0900400:five_prime_UTR
TAGTTCTCAACAAGAGAATC+TGG 0.398865 6_1:+95874176 Msa0900400:three_prime_UTR
GAAATTCTCCTCAGGCTTTG+AGG 0.401805 6_1:-95872533 None:intergenic
TTCCACTGATATCTGCATAA+TGG 0.402258 6_1:+95870722 Msa0900400:five_prime_UTR
CATCCTTCCTTTGCAGGGAG+AGG 0.404447 6_1:+95873270 Msa0900400:CDS
GGTTTAGAGATATTGCAATA+TGG 0.408360 6_1:+95872309 Msa0900400:exon
GCCTTCATACGGCATGGCCT+CGG 0.418342 6_1:-95873675 None:intergenic
GGTTTGGAGATATTGCAGTA+TGG 0.421355 6_1:+95872068 Msa0900400:intron
TGGATACCCAAGGCAGATTT+GGG 0.424790 6_1:-95873907 None:intergenic
GCCAAAGCAAAGAGTAAGAA+TGG 0.424949 6_1:+95872385 Msa0900400:CDS
AATGGGCAGAAGAGATTTAC+CGG 0.429122 6_1:+95872958 Msa0900400:CDS
TTCCTACCCAAATCTGCCTT+GGG 0.439337 6_1:+95873901 Msa0900400:CDS
ATCCTTTAGAACCATCACTA+TGG 0.440075 6_1:-95872870 None:intergenic
TCACAATTACCTGAGTTAGC+TGG 0.441376 6_1:-95873294 None:intergenic
AGCTTGCCGAATGGTAATCT+TGG 0.447111 6_1:+95874094 Msa0900400:CDS
TGCATCACTCCAGGTATTTG+AGG 0.452843 6_1:-95873108 None:intergenic
TTGTGAAGAGGAGCCTTCTT+CGG 0.455235 6_1:-95873741 None:intergenic
GAGCTGCTTCTGATTGGAGT+TGG 0.459946 6_1:+95871055 Msa0900400:five_prime_UTR
CATATGATGCCAACTACAAC+TGG 0.462837 6_1:+95873129 Msa0900400:CDS
GTCGCTGACTCAAGCGCCAA+TGG 0.463056 6_1:+95872940 Msa0900400:CDS
AACCAATTCAGATAGCAATT+CGG 0.466685 6_1:+95874063 Msa0900400:CDS
TGGAAGCTCCTCGGATACTA+GGG 0.468275 6_1:+95872405 Msa0900400:CDS
CCGCTTGATTCTGGCTTCTG+AGG 0.469818 6_1:-95872490 None:intergenic
TTCACATCCGCGGTAAGCCC+TGG 0.469941 6_1:-95873863 None:intergenic
GTATCCACCACAAGCTCAAA+TGG 0.471490 6_1:+95873923 Msa0900400:CDS
CTTTGAGGAATCAGCCCCTC+GGG 0.473466 6_1:-95872518 None:intergenic
CACAATTACCTGAGTTAGCT+GGG 0.474611 6_1:-95873293 None:intergenic
AACCATAGTGATGGTTCTAA+AGG 0.476953 6_1:+95872868 Msa0900400:CDS
TTCTTCTGATGCTTCGAAAG+AGG 0.478218 6_1:+95872909 Msa0900400:CDS
TGGTTCTAAAGGATTCATTA+GGG 0.480605 6_1:+95872879 Msa0900400:CDS
AAAAGGGGAGGATTTAGATC+AGG 0.481539 6_1:+95871119 Msa0900400:five_prime_UTR
CTTACCGCGGATGTGAAATT+CGG 0.486162 6_1:+95873869 Msa0900400:CDS
AAGGAAGCAGCACAAACCTC+AGG 0.489023 6_1:+95873777 Msa0900400:CDS
GTTCCTACCCAAATCTGCCT+TGG 0.490143 6_1:+95873900 Msa0900400:CDS
TAATAAACCAATTGAAATTG+AGG 0.491150 6_1:+95872636 Msa0900400:CDS
GCAAAAGAGTCAAACTCTGT+TGG 0.492235 6_1:+95873075 Msa0900400:CDS
GCATCACTCCAGGTATTTGA+GGG 0.494358 6_1:-95873107 None:intergenic
GGTAAATCTCTTCTGCCCAT+TGG 0.495423 6_1:-95872956 None:intergenic
AAACAGCGTGTCACCGAAGA+AGG 0.502399 6_1:+95873728 Msa0900400:CDS
GAGGATTTAGATCAGGATTG+AGG 0.502678 6_1:+95871126 Msa0900400:five_prime_UTR
TGCAATATGGAGGACGATAG+CGG 0.508877 6_1:+95872322 Msa0900400:exon
GTATGTTCAGCTTCCTATGT+TGG 0.509167 6_1:+95873212 Msa0900400:CDS
GATTGATCAAACCCTAATTG+AGG 0.511675 6_1:-95870748 None:intergenic
TGTCCTTCCATTTGAGCTTG+TGG 0.512711 6_1:-95873930 None:intergenic
TATCGTCATTGATCTTTGAA+AGG 0.513280 6_1:-95872564 None:intergenic
TTTAGAACCATCACTATGGT+TGG 0.516423 6_1:-95872866 None:intergenic
ATCATGGTGATTTACATGAC+AGG 0.518312 6_1:+95872743 Msa0900400:CDS
GATGTGAAATTCGGAGGAAG+TGG 0.522473 6_1:+95873878 Msa0900400:CDS
TCTTTGAATTTAAATGGAAG+AGG 0.522869 6_1:+95872592 Msa0900400:CDS
TCCGAGGCCATGCCGTATGA+AGG 0.523566 6_1:+95873674 Msa0900400:CDS
AATGGAAGAGGATTTCTGGT+TGG 0.524300 6_1:+95872604 Msa0900400:CDS
GCACCAAGCCCTCAAATACC+TGG 0.525712 6_1:+95873099 Msa0900400:CDS
ATTACTATCATCTACCCTCC+AGG 0.526129 6_1:+95874136 Msa0900400:three_prime_UTR
AGGCCATGCCGTATGAAGGC+AGG 0.527342 6_1:+95873678 Msa0900400:CDS
TCGCTGACTCAAGCGCCAAT+GGG 0.528288 6_1:+95872941 Msa0900400:CDS
GCACGTTCACCAGTTGTAGT+TGG 0.530873 6_1:-95873138 None:intergenic
AAACTGAATGCAGATATTTG+AGG 0.532226 6_1:+95872210 Msa0900400:five_prime_UTR
GGGCCTCTCCCTGCAAAGGA+AGG 0.535109 6_1:-95873273 None:intergenic
TCACTAAAGAAATTCTCCTC+AGG 0.538663 6_1:-95872541 None:intergenic
GCTTTGAGGAATCAGCCCCT+CGG 0.540970 6_1:-95872519 None:intergenic
CGGCCTGCCTTCATACGGCA+TGG 0.542332 6_1:-95873681 None:intergenic
GCAATATGGAGGACGATAGC+GGG 0.544052 6_1:+95872323 Msa0900400:exon
AAACGGTAGAGGTGGAAAGA+TGG 0.544120 6_1:+95872435 Msa0900400:CDS
CACGTCTTCAGGTTGTGAAG+AGG 0.545832 6_1:-95873753 None:intergenic
TTCTTCTCCCCTAGTATCCG+AGG 0.546199 6_1:-95872413 None:intergenic
AGTTTCATCCTTCCTTTGCA+GGG 0.548370 6_1:+95873265 Msa0900400:CDS
GGAGAAGAAAACGGTAGAGG+TGG 0.549135 6_1:+95872427 Msa0900400:CDS
GCAGTATGGAGGACGATAGC+GGG 0.549609 6_1:+95872082 Msa0900400:five_prime_UTR
CTGGTGCATCTTTGCCCCTG+AGG 0.550568 6_1:-95873793 None:intergenic
ATTGATGCGTGGGTTTAGTG+AGG 0.554340 6_1:+95872243 Msa0900400:five_prime_UTR
CTAGAACGAACCAAAGGTGA+TGG 0.556734 6_1:+95873704 Msa0900400:CDS
GATACTAGGGGAGAAGAAAA+CGG 0.558531 6_1:+95872418 Msa0900400:CDS
CCTTCCATTTGAGCTTGTGG+TGG 0.558546 6_1:-95873927 None:intergenic
GCATGACGAACAAAATCCTC+AGG 0.559639 6_1:-95874028 None:intergenic
ACTATGGTTGGAGAGAGGCC+TGG 0.560010 6_1:-95872854 None:intergenic
GATGCTTCGAAAGAGGTTCG+TGG 0.563001 6_1:+95872916 Msa0900400:CDS
AAGCTGAGAACTCTACCTCC+AGG 0.564043 6_1:+95872836 Msa0900400:CDS
GGAGCTCAATCTGTGAGTAA+TGG 0.566490 6_1:+95873162 Msa0900400:CDS
TCACAACCTGAAGACGTGAA+AGG 0.567779 6_1:+95873758 Msa0900400:CDS
GAATCAAGCGGTGGAACCCG+AGG 0.570978 6_1:+95872502 Msa0900400:CDS
AACATAGGAAGCTGAACATA+CGG 0.571663 6_1:-95873210 None:intergenic
AGCTGGGCCTCTCCCTGCAA+AGG 0.572843 6_1:-95873277 None:intergenic
GGCATCATATGCATCACTCC+AGG 0.573713 6_1:-95873117 None:intergenic
GAGTAAGAATGGAAGCTCCT+CGG 0.574013 6_1:+95872396 Msa0900400:CDS
ATGACATACGGAATCTAAAG+AGG 0.574178 6_1:+95872704 Msa0900400:CDS
GAAATCAGTTGAAAGAGAGT+TGG 0.575017 6_1:+95871093 Msa0900400:five_prime_UTR
TCACCTTTGGTTCGTTCTAG+CGG 0.576196 6_1:-95873701 None:intergenic
AGGAAGCAGCACAAACCTCA+GGG 0.577639 6_1:+95873778 Msa0900400:CDS
GAGCTATCCTTGTCCAACAT+AGG 0.579094 6_1:-95873225 None:intergenic
GATGAACCAAGATTACCATT+CGG 0.580457 6_1:-95874100 None:intergenic
ACTACAACTGGTGAACGTGC+AGG 0.581197 6_1:+95873141 Msa0900400:CDS
AATCAAGCGGTGGAACCCGA+GGG 0.582303 6_1:+95872503 Msa0900400:CDS
TGTTGGACAAGGATAGCTCA+TGG 0.582770 6_1:+95873229 Msa0900400:CDS
GAGCTTGTGGTGGATACCCA+AGG 0.584613 6_1:-95873917 None:intergenic
TCTAAAGGATTCATTAGGGT+CGG 0.586057 6_1:+95872883 Msa0900400:CDS
AGAATCGTCTGTGCGTGTCA+TGG 0.586566 6_1:+95873992 Msa0900400:CDS
TAGAACGAACCAAAGGTGAT+GGG 0.588598 6_1:+95873705 Msa0900400:CDS
CCAGAACAGTCGAAAGGTGA+AGG 0.589987 6_1:+95873812 Msa0900400:CDS
AAGGAAGGATGAAACTGTTG+AGG 0.591748 6_1:-95873258 None:intergenic
GGGAGAGGCCCAGCTAACTC+AGG 0.593652 6_1:+95873285 Msa0900400:CDS
AGGAAGGATGAAACTGTTGA+GGG 0.596334 6_1:-95873257 None:intergenic
GTTGGACAAGGATAGCTCAT+GGG 0.597490 6_1:+95873230 Msa0900400:CDS
CATGACAGCGACGTTCATCA+TGG 0.597745 6_1:+95872727 Msa0900400:CDS
AAAAGAGTCAAACTCTGTTG+GGG 0.602879 6_1:+95873077 Msa0900400:CDS
TGAGGAAAATAAACTGTCAG+AGG 0.603148 6_1:+95872654 Msa0900400:CDS
TACGGATGTCCAAACATCAT+CGG 0.603516 6_1:-95873192 None:intergenic
TTCCATTATGCAGATATCAG+TGG 0.606110 6_1:-95870724 None:intergenic
AGGGGAGAAGAAAACGGTAG+AGG 0.608767 6_1:+95872424 Msa0900400:CDS
CCTCTCTCCAACCATAGTGA+TGG 0.609945 6_1:+95872859 Msa0900400:CDS
TTAGAGATATTGCAATATGG+AGG 0.611848 6_1:+95872312 Msa0900400:exon
TCTAGCGGCCTGCCTTCATA+CGG 0.615919 6_1:-95873686 None:intergenic
TCAGCTTCCTATGTTGGACA+AGG 0.624986 6_1:+95873218 Msa0900400:CDS
GGCTGATTCCTCAAAGCCTG+AGG 0.626986 6_1:+95872525 Msa0900400:CDS
TTGGAGATATTGCAGTATGG+AGG 0.627449 6_1:+95872071 Msa0900400:five_prime_UTR
AACTGCAGAAAATGAAGATG+TGG 0.629556 6_1:+95872804 Msa0900400:CDS
TGCAGTATGGAGGACGATAG+CGG 0.629684 6_1:+95872081 Msa0900400:five_prime_UTR
CCACCACAAGCTCAAATGGA+AGG 0.636715 6_1:+95873927 Msa0900400:CDS
TCATGGTGATTTACATGACA+GGG 0.638749 6_1:+95872744 Msa0900400:CDS
ACCGCGGATGTGAAATTCGG+AGG 0.643018 6_1:+95873872 Msa0900400:CDS
TCCTCCGAATTTCACATCCG+CGG 0.647146 6_1:-95873873 None:intergenic
TTGGACAAGGATAGCTCATG+GGG 0.649802 6_1:+95873231 Msa0900400:CDS
CCATCACTATGGTTGGAGAG+AGG 0.650575 6_1:-95872859 None:intergenic
AAATACCTGAAATTTGAGAG+AGG 0.654404 6_1:-95870770 None:intergenic
TATATAGAGTACAACCTGGA+GGG 0.659464 6_1:-95874150 None:intergenic
TGGTTCTCACATGACTCCTG+AGG 0.661496 6_1:+95874012 Msa0900400:CDS
TACCCAAGGCAGATTTGGGT+AGG 0.663102 6_1:-95873903 None:intergenic
CAGAAGCCAGAATCAAGCGG+TGG 0.671318 6_1:+95872493 Msa0900400:CDS
ACATCTAAACAATATATCCG+AGG 0.671648 6_1:+95873658 Msa0900400:CDS
CCTCAGAAGCCAGAATCAAG+CGG 0.673978 6_1:+95872490 Msa0900400:CDS
TGAATGCAGATATTTGAGGA+CGG 0.674716 6_1:+95872214 Msa0900400:five_prime_UTR
GATGCACCAGAACAGTCGAA+AGG 0.674903 6_1:+95873806 Msa0900400:CDS
GATGAGCGGACCTTACACTT+CGG 0.678313 6_1:+95873053 Msa0900400:CDS
ATCAAGCGGTGGAACCCGAG+GGG 0.686636 6_1:+95872504 Msa0900400:CDS
GGAAGCTCCTCGGATACTAG+GGG 0.687484 6_1:+95872406 Msa0900400:CDS
AGGCCGCTAGAACGAACCAA+AGG 0.687826 6_1:+95873698 Msa0900400:CDS
ACAATATATAGAGTACAACC+TGG 0.689288 6_1:-95874154 None:intergenic
CATTAAGCCAGGGCTTACCG+CGG 0.690110 6_1:+95873856 Msa0900400:CDS
GGAAGCAGCACAAACCTCAG+GGG 0.704276 6_1:+95873779 Msa0900400:CDS
ATGGTTGGAGAGAGGCCTGG+AGG 0.705449 6_1:-95872851 None:intergenic
CAACAAGTGAATATGATGAG+CGG 0.706230 6_1:+95873039 Msa0900400:CDS
ATATATAGAGTACAACCTGG+AGG 0.721270 6_1:-95874151 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATGAAAAATTCAAATTA+GGG - chr6_1:95870854-95870873 None:intergenic 10.0%
!! AATTATGAAAAATTCAAATT+AGG - chr6_1:95870855-95870874 None:intergenic 10.0%
!! AAATAGAAAGAAAAAAAAAA+TGG - chr6_1:95874240-95874259 None:intergenic 10.0%
!!! TTTGTTGTTTTTATTTCAAA+AGG + chr6_1:95871233-95871252 Msa0900400:intron 15.0%
!!! AATTGTTAGTTAAAATGTTT+TGG + chr6_1:95873390-95873409 Msa0900400:intron 15.0%
!! ATTGTAGTTGTATTTAATAA+TGG + chr6_1:95874300-95874319 Msa0900400:three_prime_UTR 15.0%
!! AATTTGAGAGATACATAATT+GGG - chr6_1:95870898-95870917 None:intergenic 20.0%
!! TAATTTGAGAGATACATAAT+TGG - chr6_1:95870899-95870918 None:intergenic 20.0%
!!! TTGATTTTGTGGATTATTAA+TGG + chr6_1:95871271-95871290 Msa0900400:intron 20.0%
!! CAAAAAAATTAAGAATCTGA+AGG - chr6_1:95871707-95871726 None:intergenic 20.0%
!! TAATGTATATACAATGTCAA+TGG - chr6_1:95871881-95871900 None:intergenic 20.0%
!!! ATTCAGTTTGATTTTAAACA+AGG - chr6_1:95871960-95871979 None:intergenic 20.0%
!!! ATTCAGTTTGATTTTAAACA+AGG - chr6_1:95871960-95871979 None:intergenic 20.0%
!! AATGCTTCTTTGAATTTAAA+TGG + chr6_1:95872586-95872605 Msa0900400:CDS 20.0%
!!! CAATTTCAATTGGTTTATTA+TGG - chr6_1:95872636-95872655 None:intergenic 20.0%
!! TAATAAACCAATTGAAATTG+AGG + chr6_1:95872636-95872655 Msa0900400:CDS 20.0%
!!! TTATTTTCCTCAATTTCAAT+TGG - chr6_1:95872646-95872665 None:intergenic 20.0%
!! AACAATTTATGAATTTGACT+TGG - chr6_1:95873377-95873396 None:intergenic 20.0%
!!! TGAACCAAATATTCTAAAAT+TGG + chr6_1:95873460-95873479 Msa0900400:intron 20.0%
!! CTTAATGTTTGAAAAATCAA+TGG - chr6_1:95873843-95873862 None:intergenic 20.0%
! AGGGTTTATATGCAAATTAT+TGG - chr6_1:95870835-95870854 None:intergenic 25.0%
! ATTTGAGAGATACATAATTG+GGG - chr6_1:95870897-95870916 None:intergenic 25.0%
!! TTAAGCTTTTAAACTCCAAT+CGG + chr6_1:95870916-95870935 Msa0900400:intron 25.0%
! CTTGAATGGTAACAAAAAAT+GGG - chr6_1:95870949-95870968 None:intergenic 25.0%
! ACTTGAATGGTAACAAAAAA+TGG - chr6_1:95870950-95870969 None:intergenic 25.0%
!! TACAGATTTTGTGTATTCTA+GGG + chr6_1:95871028-95871047 Msa0900400:intron 25.0%
!!! AGTTTTGTGTTTTGATTTTG+TGG + chr6_1:95871260-95871279 Msa0900400:intron 25.0%
!! ACAATCATAGTTTTCATATG+AGG - chr6_1:95871370-95871389 None:intergenic 25.0%
!! AAAATGTTTTACTTCGTCAA+TGG + chr6_1:95871423-95871442 Msa0900400:intron 25.0%
! CAATGGAAAATTATTTACAC+TGG - chr6_1:95871864-95871883 None:intergenic 25.0%
!!! AATTGATGTGAGTTTTAGTA+TGG + chr6_1:95872001-95872020 Msa0900400:intron 25.0%
!! TTTAGCTATTTGATCTGTTT+TGG + chr6_1:95872278-95872297 Msa0900400:five_prime_UTR 25.0%
!!! TGATCTGTTTTGGATTTTAT+AGG + chr6_1:95872288-95872307 Msa0900400:five_prime_UTR 25.0%
! TCTTTGAATTTAAATGGAAG+AGG + chr6_1:95872592-95872611 Msa0900400:CDS 25.0%
! CATATTTCTTTAACAGAAGA+TGG + chr6_1:95872778-95872797 Msa0900400:CDS 25.0%
!!! ATGTTTGAAATCTTTTTCTG+TGG - chr6_1:95872986-95873005 None:intergenic 25.0%
!!! CCAACCAATTTTAGAATATT+TGG - chr6_1:95873467-95873486 None:intergenic 25.0%
!!! CCAAATATTCTAAAATTGGT+TGG + chr6_1:95873464-95873483 Msa0900400:intron 25.0%
!!! GATACTTACTGAGTTTTTTT+TGG + chr6_1:95873595-95873614 Msa0900400:intron 25.0%
! AATGTTTGAAAAATCAATGG+TGG - chr6_1:95873840-95873859 None:intergenic 25.0%
!!! ATTTTTCAAACATTAAGCCA+GGG + chr6_1:95873846-95873865 Msa0900400:CDS 25.0%
!! TGGAATTTCCATAATTTTTG+TGG + chr6_1:95874196-95874215 Msa0900400:three_prime_UTR 25.0%
! ATTCATCTCCACAAAAATTA+TGG - chr6_1:95874207-95874226 None:intergenic 25.0%
! GCAAGTAATTAAAGTGAAAT+AGG - chr6_1:95874264-95874283 None:intergenic 25.0%
! CATAATGGAAACCTCAATTA+GGG + chr6_1:95870737-95870756 Msa0900400:five_prime_UTR 30.0%
AAATACCTGAAATTTGAGAG+AGG - chr6_1:95870773-95870792 None:intergenic 30.0%
ATAAGAGAAAGAGGGTAAAA+GGG - chr6_1:95870805-95870824 None:intergenic 30.0%
TTTGAGAGATACATAATTGG+GGG - chr6_1:95870896-95870915 None:intergenic 30.0%
GTATCAATTCGTTACTTGAA+TGG - chr6_1:95870963-95870982 None:intergenic 30.0%
TTGATCTTGATGAACAAAAG+TGG + chr6_1:95870992-95871011 Msa0900400:intron 30.0%
! CTACAGATTTTGTGTATTCT+AGG + chr6_1:95871027-95871046 Msa0900400:intron 30.0%
! GCTTTTGATGCTTCTAAATT+TGG + chr6_1:95871178-95871197 Msa0900400:intron 30.0%
GTATAGAAATAGCAACAAGT+TGG + chr6_1:95871312-95871331 Msa0900400:intron 30.0%
! ATGTGTGACTTTAAGAGTAA+GGG + chr6_1:95871459-95871478 Msa0900400:intron 30.0%
TTTATAGAAAAAGCAGAAGC+TGG + chr6_1:95871550-95871569 Msa0900400:intron 30.0%
TATTTACACTGGTAATCAAC+TGG - chr6_1:95871853-95871872 None:intergenic 30.0%
AAACTGAATGCAGATATTTG+AGG + chr6_1:95871971-95871990 Msa0900400:intron 30.0%
!! GATGTGTTCTGAATTTTGAT+AGG + chr6_1:95872047-95872066 Msa0900400:intron 30.0%
!! GTTCTGAATTTTGATAGGTT+TGG + chr6_1:95872052-95872071 Msa0900400:intron 30.0%
TGTAACATGCAACTGATATA+TGG + chr6_1:95872168-95872187 Msa0900400:five_prime_UTR 30.0%
AAACTGAATGCAGATATTTG+AGG + chr6_1:95871971-95871990 Msa0900400:intron 30.0%
GGTTTAGAGATATTGCAATA+TGG + chr6_1:95872309-95872328 Msa0900400:exon 30.0%
TTAGAGATATTGCAATATGG+AGG + chr6_1:95872312-95872331 Msa0900400:exon 30.0%
TATCGTCATTGATCTTTGAA+AGG - chr6_1:95872567-95872586 None:intergenic 30.0%
TTTAAATGGAAGAGGATTTC+TGG + chr6_1:95872600-95872619 Msa0900400:CDS 30.0%
!! GAATGTCTTTTGATGACATA+CGG + chr6_1:95872692-95872711 Msa0900400:CDS 30.0%
!! ATGGTTCTAAAGGATTCATT+AGG + chr6_1:95872878-95872897 Msa0900400:CDS 30.0%
!! TGGTTCTAAAGGATTCATTA+GGG + chr6_1:95872879-95872898 Msa0900400:CDS 30.0%
AAACATGCAAACATGACTTA+TGG + chr6_1:95873000-95873019 Msa0900400:CDS 30.0%
TCAGGTAATTGTGATTTGAA+TGG + chr6_1:95873303-95873322 Msa0900400:intron 30.0%
ACATCTAAACAATATATCCG+AGG + chr6_1:95873658-95873677 Msa0900400:CDS 30.0%
!! GATTTTTCAAACATTAAGCC+AGG + chr6_1:95873845-95873864 Msa0900400:CDS 30.0%
AACCAATTCAGATAGCAATT+CGG + chr6_1:95874063-95874082 Msa0900400:CDS 30.0%
ACAATATATAGAGTACAACC+TGG - chr6_1:95874157-95874176 None:intergenic 30.0%
TTCCACTGATATCTGCATAA+TGG + chr6_1:95870722-95870741 Msa0900400:five_prime_UTR 35.0%
TTCCATTATGCAGATATCAG+TGG - chr6_1:95870727-95870746 None:intergenic 35.0%
! GCATAATGGAAACCTCAATT+AGG + chr6_1:95870736-95870755 Msa0900400:five_prime_UTR 35.0%
GATTGATCAAACCCTAATTG+AGG - chr6_1:95870751-95870770 None:intergenic 35.0%
TCAATCCTCTCTCAAATTTC+AGG + chr6_1:95870765-95870784 Msa0900400:five_prime_UTR 35.0%
TAAGAGAAAGAGGGTAAAAG+GGG - chr6_1:95870804-95870823 None:intergenic 35.0%
CATAAGAGAAAGAGGGTAAA+AGG - chr6_1:95870806-95870825 None:intergenic 35.0%
TGGTAACAAAAAATGGGTCA+GGG - chr6_1:95870943-95870962 None:intergenic 35.0%
ATGGTAACAAAAAATGGGTC+AGG - chr6_1:95870944-95870963 None:intergenic 35.0%
GAAATCAGTTGAAAGAGAGT+TGG + chr6_1:95871093-95871112 Msa0900400:five_prime_UTR 35.0%
!! TGAAAGAGAGTTGGTGAAAA+AGG + chr6_1:95871102-95871121 Msa0900400:five_prime_UTR 35.0%
!! GAAAGAGAGTTGGTGAAAAA+GGG + chr6_1:95871103-95871122 Msa0900400:five_prime_UTR 35.0%
!! AAAGAGAGTTGGTGAAAAAG+GGG + chr6_1:95871104-95871123 Msa0900400:five_prime_UTR 35.0%
! CATGTGTGACTTTAAGAGTA+AGG + chr6_1:95871458-95871477 Msa0900400:intron 35.0%
TTTAAGAGTAAGGGTCTCTT+TGG + chr6_1:95871468-95871487 Msa0900400:intron 35.0%
TGAATGCAGATATTTGAGGA+TGG + chr6_1:95871975-95871994 Msa0900400:intron 35.0%
TGAATGCAGATATTTGAGGA+CGG + chr6_1:95871975-95871994 Msa0900400:intron 35.0%
ACGGTTAAAAATTGATGCGT+GGG + chr6_1:95872233-95872252 Msa0900400:five_prime_UTR 35.0%
!! CTCAGTTTGGGTTTATCTTT+TGG + chr6_1:95872352-95872371 Msa0900400:CDS 35.0%
!! AGTTTGGGTTTATCTTTTGG+TGG + chr6_1:95872355-95872374 Msa0900400:CDS 35.0%
TCCATTCTTACTCTTTGCTT+TGG - chr6_1:95872389-95872408 None:intergenic 35.0%
TCACTAAAGAAATTCTCCTC+AGG - chr6_1:95872544-95872563 None:intergenic 35.0%
TGAGGAAAATAAACTGTCAG+AGG + chr6_1:95872654-95872673 Msa0900400:CDS 35.0%
ATGACATACGGAATCTAAAG+AGG + chr6_1:95872704-95872723 Msa0900400:CDS 35.0%
ATCATGGTGATTTACATGAC+AGG + chr6_1:95872743-95872762 Msa0900400:CDS 35.0%
TCATGGTGATTTACATGACA+GGG + chr6_1:95872744-95872763 Msa0900400:CDS 35.0%
AACTGCAGAAAATGAAGATG+TGG + chr6_1:95872804-95872823 Msa0900400:CDS 35.0%
! TTTAGAACCATCACTATGGT+TGG - chr6_1:95872869-95872888 None:intergenic 35.0%
!! AACCATAGTGATGGTTCTAA+AGG + chr6_1:95872868-95872887 Msa0900400:CDS 35.0%
!! ATCCTTTAGAACCATCACTA+TGG - chr6_1:95872873-95872892 None:intergenic 35.0%
TCTAAAGGATTCATTAGGGT+CGG + chr6_1:95872883-95872902 Msa0900400:CDS 35.0%
! GAAATCTTTTTCTGTGGATC+CGG - chr6_1:95872980-95872999 None:intergenic 35.0%
! TTCACTTGTTGAGCAGAAAA+AGG - chr6_1:95873030-95873049 None:intergenic 35.0%
CAACAAGTGAATATGATGAG+CGG + chr6_1:95873039-95873058 Msa0900400:CDS 35.0%
CAAAAGAGTCAAACTCTGTT+GGG + chr6_1:95873076-95873095 Msa0900400:CDS 35.0%
AAAAGAGTCAAACTCTGTTG+GGG + chr6_1:95873077-95873096 Msa0900400:CDS 35.0%
AACATAGGAAGCTGAACATA+CGG - chr6_1:95873213-95873232 None:intergenic 35.0%
ATATGTTCCTGACTGCATTA+TGG + chr6_1:95873420-95873439 Msa0900400:intron 35.0%
GGTTCAGTTTACAAAACTTG+CGG - chr6_1:95873446-95873465 None:intergenic 35.0%
! TCTAAAATTGGTTGGAAGAC+TGG + chr6_1:95873472-95873491 Msa0900400:intron 35.0%
GAAGACTGGCATATTGAATT+GGG + chr6_1:95873486-95873505 Msa0900400:intron 35.0%
TCAAATGGAAGGACAATATC+AGG + chr6_1:95873938-95873957 Msa0900400:CDS 35.0%
!! CAATATCAGGTGTTACTTAC+AGG + chr6_1:95873951-95873970 Msa0900400:CDS 35.0%
AACCGAATTGCTATCTGAAT+TGG - chr6_1:95874068-95874087 None:intergenic 35.0%
! TTCAGATAGCAATTCGGTTT+TGG + chr6_1:95874069-95874088 Msa0900400:CDS 35.0%
! TCAGATAGCAATTCGGTTTT+GGG + chr6_1:95874070-95874089 Msa0900400:CDS 35.0%
GATGAACCAAGATTACCATT+CGG - chr6_1:95874103-95874122 None:intergenic 35.0%
TATATAGAGTACAACCTGGA+GGG - chr6_1:95874153-95874172 None:intergenic 35.0%
ATATATAGAGTACAACCTGG+AGG - chr6_1:95874154-95874173 None:intergenic 35.0%
TAGTTCTCAACAAGAGAATC+TGG + chr6_1:95874176-95874195 Msa0900400:three_prime_UTR 35.0%
! GAGAGTGCATAAGAGAAAGA+GGG - chr6_1:95870813-95870832 None:intergenic 40.0%
AAAAGGGGAGGATTTAGATC+AGG + chr6_1:95871119-95871138 Msa0900400:five_prime_UTR 40.0%
GAGGATTTAGATCAGGATTG+AGG + chr6_1:95871126-95871145 Msa0900400:five_prime_UTR 40.0%
TTTAGATCAGGATTGAGGTG+AGG + chr6_1:95871131-95871150 Msa0900400:intron 40.0%
TAAAAACAGCTTCACATGCG+AGG + chr6_1:95871662-95871681 Msa0900400:intron 40.0%
TGTGTTACATGCAACTGACA+TGG + chr6_1:95871930-95871949 Msa0900400:intron 40.0%
GGTTTGGAGATATTGCAGTA+TGG + chr6_1:95872068-95872087 Msa0900400:intron 40.0%
TTGGAGATATTGCAGTATGG+AGG + chr6_1:95872071-95872090 Msa0900400:five_prime_UTR 40.0%
GACGGTTAAAAATTGATGCG+TGG + chr6_1:95872232-95872251 Msa0900400:five_prime_UTR 40.0%
GCCAAAGCAAAGAGTAAGAA+TGG + chr6_1:95872385-95872404 Msa0900400:CDS 40.0%
GATACTAGGGGAGAAGAAAA+CGG + chr6_1:95872418-95872437 Msa0900400:CDS 40.0%
!! AATGGAAGAGGATTTCTGGT+TGG + chr6_1:95872604-95872623 Msa0900400:CDS 40.0%
TTCTTCTGATGCTTCGAAAG+AGG + chr6_1:95872909-95872928 Msa0900400:CDS 40.0%
AATGGGCAGAAGAGATTTAC+CGG + chr6_1:95872958-95872977 Msa0900400:CDS 40.0%
GCAAAAGAGTCAAACTCTGT+TGG + chr6_1:95873075-95873094 Msa0900400:CDS 40.0%
CATATGATGCCAACTACAAC+TGG + chr6_1:95873129-95873148 Msa0900400:CDS 40.0%
TACGGATGTCCAAACATCAT+CGG - chr6_1:95873195-95873214 None:intergenic 40.0%
GTATGTTCAGCTTCCTATGT+TGG + chr6_1:95873212-95873231 Msa0900400:CDS 40.0%
AGGAAGGATGAAACTGTTGA+GGG - chr6_1:95873260-95873279 None:intergenic 40.0%
AAGGAAGGATGAAACTGTTG+AGG - chr6_1:95873261-95873280 None:intergenic 40.0%
AGTTTCATCCTTCCTTTGCA+GGG + chr6_1:95873265-95873284 Msa0900400:CDS 40.0%
CACAATTACCTGAGTTAGCT+GGG - chr6_1:95873296-95873315 None:intergenic 40.0%
TCACAATTACCTGAGTTAGC+TGG - chr6_1:95873297-95873316 None:intergenic 40.0%
!! AAGTTCTGAGTCGGGAATAT+TGG - chr6_1:95873347-95873366 None:intergenic 40.0%
!! GATCTTTGAAGTTCTGAGTC+GGG - chr6_1:95873355-95873374 None:intergenic 40.0%
!! GGATCTTTGAAGTTCTGAGT+CGG - chr6_1:95873356-95873375 None:intergenic 40.0%
GGAAGACTGGCATATTGAAT+TGG + chr6_1:95873485-95873504 Msa0900400:intron 40.0%
ACTGGCATATTGAATTGGGT+TGG + chr6_1:95873490-95873509 Msa0900400:intron 40.0%
TAGAACGAACCAAAGGTGAT+GGG + chr6_1:95873705-95873724 Msa0900400:CDS 40.0%
ATTACTATCATCTACCCTCC+AGG + chr6_1:95874136-95874155 Msa0900400:three_prime_UTR 40.0%
! GGAGAGTGCATAAGAGAAAG+AGG - chr6_1:95870814-95870833 None:intergenic 45.0%
!!! GGTTTTGAGCTGCTTCTGAT+TGG + chr6_1:95871049-95871068 Msa0900400:five_prime_UTR 45.0%
AGAGTAAGGGTCTCTTTGGT+AGG + chr6_1:95871472-95871491 Msa0900400:intron 45.0%
GAGTAAGGGTCTCTTTGGTA+GGG + chr6_1:95871473-95871492 Msa0900400:intron 45.0%
CTGGTAATCAACTGGAACAG+TGG - chr6_1:95871845-95871864 None:intergenic 45.0%
ATTGATGCGTGGGTTTAGTG+AGG + chr6_1:95872243-95872262 Msa0900400:five_prime_UTR 45.0%
TGCAATATGGAGGACGATAG+CGG + chr6_1:95872322-95872341 Msa0900400:exon 45.0%
GAGTAAGAATGGAAGCTCCT+CGG + chr6_1:95872396-95872415 Msa0900400:CDS 45.0%
AAACGGTAGAGGTGGAAAGA+TGG + chr6_1:95872435-95872454 Msa0900400:CDS 45.0%
GAAATTCTCCTCAGGCTTTG+AGG - chr6_1:95872536-95872555 None:intergenic 45.0%
GGTAAATCTCTTCTGCCCAT+TGG - chr6_1:95872959-95872978 None:intergenic 45.0%
! GACTCTTTTGCCGAAGTGTA+AGG - chr6_1:95873066-95873085 None:intergenic 45.0%
GCATCACTCCAGGTATTTGA+GGG - chr6_1:95873110-95873129 None:intergenic 45.0%
TGCATCACTCCAGGTATTTG+AGG - chr6_1:95873111-95873130 None:intergenic 45.0%
GGAGCTCAATCTGTGAGTAA+TGG + chr6_1:95873162-95873181 Msa0900400:CDS 45.0%
TCAGCTTCCTATGTTGGACA+AGG + chr6_1:95873218-95873237 Msa0900400:CDS 45.0%
GAGCTATCCTTGTCCAACAT+AGG - chr6_1:95873228-95873247 None:intergenic 45.0%
TGTTGGACAAGGATAGCTCA+TGG + chr6_1:95873229-95873248 Msa0900400:CDS 45.0%
GTTGGACAAGGATAGCTCAT+GGG + chr6_1:95873230-95873249 Msa0900400:CDS 45.0%
TTGGACAAGGATAGCTCATG+GGG + chr6_1:95873231-95873250 Msa0900400:CDS 45.0%
CAGTTTCATCCTTCCTTTGC+AGG + chr6_1:95873264-95873283 Msa0900400:CDS 45.0%
! TCACCTTTGGTTCGTTCTAG+CGG - chr6_1:95873704-95873723 None:intergenic 45.0%
CTAGAACGAACCAAAGGTGA+TGG + chr6_1:95873704-95873723 Msa0900400:CDS 45.0%
TTGTGAAGAGGAGCCTTCTT+CGG - chr6_1:95873744-95873763 None:intergenic 45.0%
TCACAACCTGAAGACGTGAA+AGG + chr6_1:95873758-95873777 Msa0900400:CDS 45.0%
CTTACCGCGGATGTGAAATT+CGG + chr6_1:95873869-95873888 Msa0900400:CDS 45.0%
GATGTGAAATTCGGAGGAAG+TGG + chr6_1:95873878-95873897 Msa0900400:CDS 45.0%
TTCCTACCCAAATCTGCCTT+GGG + chr6_1:95873901-95873920 Msa0900400:CDS 45.0%
TGGATACCCAAGGCAGATTT+GGG - chr6_1:95873910-95873929 None:intergenic 45.0%
GTATCCACCACAAGCTCAAA+TGG + chr6_1:95873923-95873942 Msa0900400:CDS 45.0%
TGTCCTTCCATTTGAGCTTG+TGG - chr6_1:95873933-95873952 None:intergenic 45.0%
ACGCACAGACGATTCTGATT+TGG - chr6_1:95873988-95874007 None:intergenic 45.0%
GCATGACGAACAAAATCCTC+AGG - chr6_1:95874031-95874050 None:intergenic 45.0%
AGCTTGCCGAATGGTAATCT+TGG + chr6_1:95874094-95874113 Msa0900400:CDS 45.0%
AAAATGGGTCAGGGTCCGAT+TGG - chr6_1:95870934-95870953 None:intergenic 50.0%
GAGCTGCTTCTGATTGGAGT+TGG + chr6_1:95871055-95871074 Msa0900400:five_prime_UTR 50.0%
!! GAGAGTTGGTGAAAAAGGGG+AGG + chr6_1:95871107-95871126 Msa0900400:five_prime_UTR 50.0%
TGCAGTATGGAGGACGATAG+CGG + chr6_1:95872081-95872100 Msa0900400:five_prime_UTR 50.0%
!! TAGCGGGCTTTAGCTCAGTT+TGG + chr6_1:95872098-95872117 Msa0900400:five_prime_UTR 50.0%
GCAATATGGAGGACGATAGC+GGG + chr6_1:95872323-95872342 Msa0900400:exon 50.0%
ATGGAAGCTCCTCGGATACT+AGG + chr6_1:95872404-95872423 Msa0900400:CDS 50.0%
TGGAAGCTCCTCGGATACTA+GGG + chr6_1:95872405-95872424 Msa0900400:CDS 50.0%
TTCTTCTCCCCTAGTATCCG+AGG - chr6_1:95872416-95872435 None:intergenic 50.0%
AGGGGAGAAGAAAACGGTAG+AGG + chr6_1:95872424-95872443 Msa0900400:CDS 50.0%
GGAGAAGAAAACGGTAGAGG+TGG + chr6_1:95872427-95872446 Msa0900400:CDS 50.0%
CCTCAGAAGCCAGAATCAAG+CGG + chr6_1:95872490-95872509 Msa0900400:CDS 50.0%
CATGACAGCGACGTTCATCA+TGG + chr6_1:95872727-95872746 Msa0900400:CDS 50.0%
AAGCTGAGAACTCTACCTCC+AGG + chr6_1:95872836-95872855 Msa0900400:CDS 50.0%
CCATCACTATGGTTGGAGAG+AGG - chr6_1:95872862-95872881 None:intergenic 50.0%
CCTCTCTCCAACCATAGTGA+TGG + chr6_1:95872859-95872878 Msa0900400:CDS 50.0%
GATGCTTCGAAAGAGGTTCG+TGG + chr6_1:95872916-95872935 Msa0900400:CDS 50.0%
GATGAGCGGACCTTACACTT+CGG + chr6_1:95873053-95873072 Msa0900400:CDS 50.0%
ACTCCAGGTATTTGAGGGCT+TGG - chr6_1:95873105-95873124 None:intergenic 50.0%
GGCATCATATGCATCACTCC+AGG - chr6_1:95873120-95873139 None:intergenic 50.0%
GCACGTTCACCAGTTGTAGT+TGG - chr6_1:95873141-95873160 None:intergenic 50.0%
ACTACAACTGGTGAACGTGC+AGG + chr6_1:95873141-95873160 Msa0900400:CDS 50.0%
GGAAGCTTGCCGATGATGTT+TGG + chr6_1:95873183-95873202 Msa0900400:CDS 50.0%
! ACGCTGTTTCCCATCACCTT+TGG - chr6_1:95873717-95873736 None:intergenic 50.0%
AAACAGCGTGTCACCGAAGA+AGG + chr6_1:95873728-95873747 Msa0900400:CDS 50.0%
!! CACGTCTTCAGGTTGTGAAG+AGG - chr6_1:95873756-95873775 None:intergenic 50.0%
CTGCTTCCTTTCACGTCTTC+AGG - chr6_1:95873767-95873786 None:intergenic 50.0%
AAGGAAGCAGCACAAACCTC+AGG + chr6_1:95873777-95873796 Msa0900400:CDS 50.0%
AGGAAGCAGCACAAACCTCA+GGG + chr6_1:95873778-95873797 Msa0900400:CDS 50.0%
GATGCACCAGAACAGTCGAA+AGG + chr6_1:95873806-95873825 Msa0900400:CDS 50.0%
CCTTCACCTTTCGACTGTTC+TGG - chr6_1:95873815-95873834 None:intergenic 50.0%
CCAGAACAGTCGAAAGGTGA+AGG + chr6_1:95873812-95873831 Msa0900400:CDS 50.0%
TCCTCCGAATTTCACATCCG+CGG - chr6_1:95873876-95873895 None:intergenic 50.0%
GTTCCTACCCAAATCTGCCT+TGG + chr6_1:95873900-95873919 Msa0900400:CDS 50.0%
TACCCAAGGCAGATTTGGGT+AGG - chr6_1:95873906-95873925 None:intergenic 50.0%
GTGGATACCCAAGGCAGATT+TGG - chr6_1:95873911-95873930 None:intergenic 50.0%
CCTTCCATTTGAGCTTGTGG+TGG - chr6_1:95873930-95873949 None:intergenic 50.0%
CCACCACAAGCTCAAATGGA+AGG + chr6_1:95873927-95873946 Msa0900400:CDS 50.0%
AGAATCGTCTGTGCGTGTCA+TGG + chr6_1:95873992-95874011 Msa0900400:CDS 50.0%
TGGTTCTCACATGACTCCTG+AGG + chr6_1:95874012-95874031 Msa0900400:CDS 50.0%
!!! GTTTTGGGAAGCTTGCCGAA+TGG + chr6_1:95874085-95874104 Msa0900400:CDS 50.0%
GCAGTATGGAGGACGATAGC+GGG + chr6_1:95872082-95872101 Msa0900400:five_prime_UTR 55.0%
!! TAGCGGGCTTGAGCTCAGTT+TGG + chr6_1:95872339-95872358 Msa0900400:CDS 55.0%
! AGCGGGCTTGAGCTCAGTTT+GGG + chr6_1:95872340-95872359 Msa0900400:CDS 55.0%
GGAAGCTCCTCGGATACTAG+GGG + chr6_1:95872406-95872425 Msa0900400:CDS 55.0%
!! CCGCTTGATTCTGGCTTCTG+AGG - chr6_1:95872493-95872512 None:intergenic 55.0%
CAGAAGCCAGAATCAAGCGG+TGG + chr6_1:95872493-95872512 Msa0900400:CDS 55.0%
AATCAAGCGGTGGAACCCGA+GGG + chr6_1:95872503-95872522 Msa0900400:CDS 55.0%
! CTTTGAGGAATCAGCCCCTC+GGG - chr6_1:95872521-95872540 None:intergenic 55.0%
!! GCTTTGAGGAATCAGCCCCT+CGG - chr6_1:95872522-95872541 None:intergenic 55.0%
! GGCTGATTCCTCAAAGCCTG+AGG + chr6_1:95872525-95872544 Msa0900400:CDS 55.0%
ACTATGGTTGGAGAGAGGCC+TGG - chr6_1:95872857-95872876 None:intergenic 55.0%
!! TCGCTGACTCAAGCGCCAAT+GGG + chr6_1:95872941-95872960 Msa0900400:CDS 55.0%
GCACCAAGCCCTCAAATACC+TGG + chr6_1:95873099-95873118 Msa0900400:CDS 55.0%
CATCCTTCCTTTGCAGGGAG+AGG + chr6_1:95873270-95873289 Msa0900400:CDS 55.0%
CTTGCGGCCATAATGCAGTC+AGG - chr6_1:95873430-95873449 None:intergenic 55.0%
TCTAGCGGCCTGCCTTCATA+CGG - chr6_1:95873689-95873708 None:intergenic 55.0%
AGGCCGCTAGAACGAACCAA+AGG + chr6_1:95873698-95873717 Msa0900400:CDS 55.0%
GGAAGCAGCACAAACCTCAG+GGG + chr6_1:95873779-95873798 Msa0900400:CDS 55.0%
CATTAAGCCAGGGCTTACCG+CGG + chr6_1:95873856-95873875 Msa0900400:CDS 55.0%
ACCGCGGATGTGAAATTCGG+AGG + chr6_1:95873872-95873891 Msa0900400:CDS 55.0%
!! GAGCTTGTGGTGGATACCCA+AGG - chr6_1:95873920-95873939 None:intergenic 55.0%
CGGGTTCCACCGCTTGATTC+TGG - chr6_1:95872502-95872521 None:intergenic 60.0%
GAATCAAGCGGTGGAACCCG+AGG + chr6_1:95872502-95872521 Msa0900400:CDS 60.0%
ATCAAGCGGTGGAACCCGAG+GGG + chr6_1:95872504-95872523 Msa0900400:CDS 60.0%
ATGGTTGGAGAGAGGCCTGG+AGG - chr6_1:95872854-95872873 None:intergenic 60.0%
!! GTCGCTGACTCAAGCGCCAA+TGG + chr6_1:95872940-95872959 Msa0900400:CDS 60.0%
TCCGAGGCCATGCCGTATGA+AGG + chr6_1:95873674-95873693 Msa0900400:CDS 60.0%
GCCTTCATACGGCATGGCCT+CGG - chr6_1:95873678-95873697 None:intergenic 60.0%
AGGCCATGCCGTATGAAGGC+AGG + chr6_1:95873678-95873697 Msa0900400:CDS 60.0%
CTGGTGCATCTTTGCCCCTG+AGG - chr6_1:95873796-95873815 None:intergenic 60.0%
TTCACATCCGCGGTAAGCCC+TGG - chr6_1:95873866-95873885 None:intergenic 60.0%
GGGCCTCTCCCTGCAAAGGA+AGG - chr6_1:95873276-95873295 None:intergenic 65.0%
AGCTGGGCCTCTCCCTGCAA+AGG - chr6_1:95873280-95873299 None:intergenic 65.0%
GGGAGAGGCCCAGCTAACTC+AGG + chr6_1:95873285-95873304 Msa0900400:CDS 65.0%
CGGCCTGCCTTCATACGGCA+TGG - chr6_1:95873684-95873703 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 95870717 95874389 95870717 ID=Msa0900400;Name=Msa0900400
chr6_1 mRNA 95870717 95874389 95870717 ID=Msa0900400-mRNA-1;Parent=Msa0900400;Name=Msa0900400-mRNA-1;_AED=0.01;_eAED=0.01;_QI=444|1|1|1|0.33|0.25|4|254|487
chr6_1 exon 95870717 95870786 95870717 ID=Msa0900400-mRNA-1:exon:16587;Parent=Msa0900400-mRNA-1
chr6_1 exon 95871033 95871147 95871033 ID=Msa0900400-mRNA-1:exon:16588;Parent=Msa0900400-mRNA-1
chr6_1 exon 95872069 95873306 95872069 ID=Msa0900400-mRNA-1:exon:16589;Parent=Msa0900400-mRNA-1
chr6_1 exon 95873651 95874389 95873651 ID=Msa0900400-mRNA-1:exon:16590;Parent=Msa0900400-mRNA-1
chr6_1 five_prime_UTR 95870717 95870786 95870717 ID=Msa0900400-mRNA-1:five_prime_utr;Parent=Msa0900400-mRNA-1
chr6_1 five_prime_UTR 95871033 95871147 95871033 ID=Msa0900400-mRNA-1:five_prime_utr;Parent=Msa0900400-mRNA-1
chr6_1 five_prime_UTR 95872069 95872327 95872069 ID=Msa0900400-mRNA-1:five_prime_utr;Parent=Msa0900400-mRNA-1
chr6_1 CDS 95872328 95873306 95872328 ID=Msa0900400-mRNA-1:cds;Parent=Msa0900400-mRNA-1
chr6_1 CDS 95873651 95874135 95873651 ID=Msa0900400-mRNA-1:cds;Parent=Msa0900400-mRNA-1
chr6_1 three_prime_UTR 95874136 95874389 95874136 ID=Msa0900400-mRNA-1:three_prime_utr;Parent=Msa0900400-mRNA-1
Gene Sequence

>Msa0900400

ATGGAGGACGATAGCGGGCTTGAGCTCAGTTTGGGTTTATCTTTTGGTGGTTCATCAGCCAAAGCAAAGAGTAAGAATGGAAGCTCCTCGGATACTAGGGGAGAAGAAAACGGTAGAGGTGGAAAGATGGTTGATGATTTTAAGAGCATGTTTAATACTGATCCTCAGAAGCCAGAATCAAGCGGTGGAACCCGAGGGGCTGATTCCTCAAAGCCTGAGGAGAATTTCTTTAGTGACCTTTCAAAGATCAATGACGATAATGCTTCTTTGAATTTAAATGGAAGAGGATTTCTGGTTGGAAACAACCATAATAAACCAATTGAAATTGAGGAAAATAAACTGTCAGAGGCAGTAAATAAGCGAAGAATGTCTTTTGATGACATACGGAATCTAAAGAGGCATGACAGCGACGTTCATCATGGTGATTTACATGACAGGGCAAGAGCATCTCATATTTCTTTAACAGAAGATGGATCAACTGCAGAAAATGAAGATGTGGCTGATTCTGAAGCTGAGAACTCTACCTCCAGGCCTCTCTCCAACCATAGTGATGGTTCTAAAGGATTCATTAGGGTCGGTGCTTCTTCTGATGCTTCGAAAGAGGTTCGTGGAGTCGCTGACTCAAGCGCCAATGGGCAGAAGAGATTTACCGGATCCACAGAAAAAGATTTCAAACATGCAAACATGACTTATGGTGCTCCTTTTTCTGCTCAACAAGTGAATATGATGAGCGGACCTTACACTTCGGCAAAAGAGTCAAACTCTGTTGGGGCACCAAGCCCTCAAATACCTGGAGTGATGCATATGATGCCAACTACAACTGGTGAACGTGCAGGAGCTCAATCTGTGAGTAATGGAAGCTTGCCGATGATGTTTGGACATCCGTATGTTCAGCTTCCTATGTTGGACAAGGATAGCTCATGGGGACGCCCTCAACAGTTTCATCCTTCCTTTGCAGGGAGAGGCCCAGCTAACTCAGCTGCGTTACATCTAAACAATATATCCGAGGCCATGCCGTATGAAGGCAGGCCGCTAGAACGAACCAAAGGTGATGGGAAACAGCGTGTCACCGAAGAAGGCTCCTCTTCACAACCTGAAGACGTGAAAGGAAGCAGCACAAACCTCAGGGGCAAAGATGCACCAGAACAGTCGAAAGGTGAAGGTTCCACCATTGATTTTTCAAACATTAAGCCAGGGCTTACCGCGGATGTGAAATTCGGAGGAAGTGGTTCCTACCCAAATCTGCCTTGGGTATCCACCACAAGCTCAAATGGAAGGACAATATCAGGTGTTACTTACAGGTACAACACTAACCAAATCAGAATCGTCTGTGCGTGTCATGGTTCTCACATGACTCCTGAGGATTTTGTTCGTCATGCAAATGACGAACAAACCAATTCAGATAGCAATTCGGTTTTGGGAAGCTTGCCGAATGGTAATCTTGGTTCATCTTCTCACAGTTAG
Protein sequence

>Msa0900400

MEDDSGLELSLGLSFGGSSAKAKSKNGSSSDTRGEENGRGGKMVDDFKSMFNTDPQKPESSGGTRGADSSKPEENFFSDLSKINDDNASLNLNGRGFLVGNNHNKPIEIEENKLSEAVNKRRMSFDDIRNLKRHDSDVHHGDLHDRARASHISLTEDGSTAENEDVADSEAENSTSRPLSNHSDGSKGFIRVGASSDASKEVRGVADSSANGQKRFTGSTEKDFKHANMTYGAPFSAQQVNMMSGPYTSAKESNSVGAPSPQIPGVMHMMPTTTGERAGAQSVSNGSLPMMFGHPYVQLPMLDKDSSWGRPQQFHPSFAGRGPANSAALHLNNISEAMPYEGRPLERTKGDGKQRVTEEGSSSQPEDVKGSSTNLRGKDAPEQSKGEGSTIDFSNIKPGLTADVKFGGSGSYPNLPWVSTTSSNGRTISGVTYRYNTNQIRIVCACHGSHMTPEDFVRHANDEQTNSDSNSVLGSLPNGNLGSSSHS*