Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530560 | AES86588.1 | 83.333 | 216 | 9 | 3 | 36 | 225 | 60 | 274 | 5.36e-115 | 339 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530560 | G7JGZ5 | 83.333 | 216 | 9 | 3 | 36 | 225 | 60 | 274 | 2.56e-115 | 339 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020410 | Msa0530560 | 0.839359 | 1.661388e-57 | -8.615850e-47 |
| Msa0026910 | Msa0530560 | 0.801759 | 7.737776e-49 | -8.615850e-47 |
| Msa0032080 | Msa0530560 | 0.806127 | 9.566527e-50 | -8.615850e-47 |
| Msa0043980 | Msa0530560 | 0.817315 | 3.515583e-52 | -8.615850e-47 |
| Msa0044000 | Msa0530560 | 0.841142 | 5.685521e-58 | -8.615850e-47 |
| Msa0044260 | Msa0530560 | 0.818168 | 2.255920e-52 | -8.615850e-47 |
| Msa0044330 | Msa0530560 | 0.811600 | 6.454704e-51 | -8.615850e-47 |
| Msa0047110 | Msa0530560 | 0.809097 | 2.238850e-50 | -8.615850e-47 |
| Msa0072420 | Msa0530560 | 0.813479 | 2.506410e-51 | -8.615850e-47 |
| Msa0079070 | Msa0530560 | 0.821665 | 3.578896e-53 | -8.615850e-47 |
| Msa0081780 | Msa0530560 | 0.804865 | 1.759724e-49 | -8.615850e-47 |
| Msa0083280 | Msa0530560 | 0.806894 | 6.590865e-50 | -8.615850e-47 |
| Msa0090570 | Msa0530560 | 0.815770 | 7.795678e-52 | -8.615850e-47 |
| Msa0101500 | Msa0530560 | -0.835306 | 1.812089e-56 | -8.615850e-47 |
| Msa0101750 | Msa0530560 | 0.832259 | 1.046729e-55 | -8.615850e-47 |
| Msa0115790 | Msa0530560 | 0.831692 | 1.444885e-55 | -8.615850e-47 |
| Msa0123000 | Msa0530560 | -0.843330 | 1.497175e-58 | -8.615850e-47 |
| Msa0127650 | Msa0530560 | 0.820196 | 7.793075e-53 | -8.615850e-47 |
| Msa0127800 | Msa0530560 | 0.844357 | 7.947709e-59 | -8.615850e-47 |
| Msa0132630 | Msa0530560 | -0.801428 | 9.047718e-49 | -8.615850e-47 |
| Msa0148080 | Msa0530560 | 0.807304 | 5.395422e-50 | -8.615850e-47 |
| Msa0153800 | Msa0530560 | 0.810044 | 1.401383e-50 | -8.615850e-47 |
| Msa0167500 | Msa0530560 | -0.802715 | 4.919535e-49 | -8.615850e-47 |
| Msa0168310 | Msa0530560 | 0.809183 | 2.145603e-50 | -8.615850e-47 |
| Msa0178570 | Msa0530560 | 0.812888 | 3.378883e-51 | -8.615850e-47 |
| Msa0188590 | Msa0530560 | 0.806190 | 9.278901e-50 | -8.615850e-47 |
| Msa0195980 | Msa0530560 | 0.810703 | 1.010472e-50 | -8.615850e-47 |
| Msa0204960 | Msa0530560 | 0.812575 | 3.956692e-51 | -8.615850e-47 |
| Msa0211150 | Msa0530560 | 0.829965 | 3.832008e-55 | -8.615850e-47 |
| Msa0218370 | Msa0530560 | 0.805566 | 1.254685e-49 | -8.615850e-47 |
| Msa0219590 | Msa0530560 | 0.857688 | 1.376741e-62 | -8.615850e-47 |
| Msa0221540 | Msa0530560 | 0.806983 | 6.310016e-50 | -8.615850e-47 |
| Msa0386800 | Msa0530560 | 0.804041 | 2.612898e-49 | -8.615850e-47 |
| Msa0389920 | Msa0530560 | 0.812999 | 3.195019e-51 | -8.615850e-47 |
| Msa0395750 | Msa0530560 | 0.826585 | 2.501956e-54 | -8.615850e-47 |
| Msa0398670 | Msa0530560 | 0.815977 | 7.010966e-52 | -8.615850e-47 |
| Msa0411390 | Msa0530560 | 0.808546 | 2.936363e-50 | -8.615850e-47 |
| Msa0425170 | Msa0530560 | 0.837071 | 6.451642e-57 | -8.615850e-47 |
| Msa0434540 | Msa0530560 | 0.808186 | 3.504980e-50 | -8.615850e-47 |
| Msa0450400 | Msa0530560 | -0.810366 | 1.194596e-50 | -8.615850e-47 |
| Msa0454360 | Msa0530560 | 0.875962 | 2.036342e-68 | -8.615850e-47 |
| Msa0468270 | Msa0530560 | 0.811424 | 7.049997e-51 | -8.615850e-47 |
| Msa0471670 | Msa0530560 | 0.835250 | 1.871727e-56 | -8.615850e-47 |
| Msa0240920 | Msa0530560 | 0.822219 | 2.663550e-53 | -8.615850e-47 |
| Msa0259430 | Msa0530560 | 0.812625 | 3.858300e-51 | -8.615850e-47 |
| Msa0261090 | Msa0530560 | 0.834839 | 2.376843e-56 | -8.615850e-47 |
| Msa0270580 | Msa0530560 | 0.802187 | 6.319661e-49 | -8.615850e-47 |
| Msa0272300 | Msa0530560 | 0.818869 | 1.565173e-52 | -8.615850e-47 |
| Msa0287410 | Msa0530560 | 0.812080 | 5.074007e-51 | -8.615850e-47 |
| Msa0287870 | Msa0530560 | 0.829691 | 4.467239e-55 | -8.615850e-47 |
| Msa0305410 | Msa0530560 | 0.809631 | 1.720310e-50 | -8.615850e-47 |
| Msa0305610 | Msa0530560 | 0.817279 | 3.580410e-52 | -8.615850e-47 |
| Msa0316390 | Msa0530560 | 0.802231 | 6.187926e-49 | -8.615850e-47 |
| Msa0317940 | Msa0530560 | 0.813482 | 2.503215e-51 | -8.615850e-47 |
| Msa0343850 | Msa0530560 | 0.817852 | 2.659062e-52 | -8.615850e-47 |
| Msa0361490 | Msa0530560 | 0.812366 | 4.395630e-51 | -8.615850e-47 |
| Msa0363790 | Msa0530560 | 0.806997 | 6.267575e-50 | -8.615850e-47 |
| Msa0521270 | Msa0530560 | 0.823691 | 1.208518e-53 | -8.615850e-47 |
| Msa0527540 | Msa0530560 | 0.823907 | 1.075942e-53 | -8.615850e-47 |
| Msa0530560 | Msa0531530 | 0.841698 | 4.059106e-58 | -8.615850e-47 |
| Msa0530560 | Msa0534150 | 0.800183 | 1.623853e-48 | -8.615850e-47 |
| Msa0530560 | Msa0542260 | 0.845445 | 4.042287e-59 | -8.615850e-47 |
| Msa0530560 | Msa0542290 | 0.805471 | 1.313877e-49 | -8.615850e-47 |
| Msa0530560 | Msa0578920 | 0.809059 | 2.281708e-50 | -8.615850e-47 |
| Msa0530560 | Msa0581010 | 0.813716 | 2.223086e-51 | -8.615850e-47 |
| Msa0530560 | Msa0587120 | 0.824739 | 6.856002e-54 | -8.615850e-47 |
| Msa0530560 | Msa0610840 | -0.812298 | 4.548534e-51 | -8.615850e-47 |
| Msa0530560 | Msa0610880 | 0.811648 | 6.301882e-51 | -8.615850e-47 |
| Msa0530560 | Msa0611540 | -0.801358 | 9.348183e-49 | -8.615850e-47 |
| Msa0530560 | Msa0665280 | 0.823142 | 1.624096e-53 | -8.615850e-47 |
| Msa0530560 | Msa0665860 | 0.844703 | 6.414211e-59 | -8.615850e-47 |
| Msa0530560 | Msa0676130 | 0.802683 | 4.993089e-49 | -8.615850e-47 |
| Msa0530560 | Msa0676180 | 0.806175 | 9.347142e-50 | -8.615850e-47 |
| Msa0530560 | Msa0677530 | 0.826396 | 2.775875e-54 | -8.615850e-47 |
| Msa0530560 | Msa0681250 | 0.813817 | 2.112347e-51 | -8.615850e-47 |
| Msa0530560 | Msa0681270 | 0.804811 | 1.806066e-49 | -8.615850e-47 |
| Msa0530560 | Msa0709400 | 0.853136 | 2.916853e-61 | -8.615850e-47 |
| Msa0530560 | Msa0717890 | 0.811100 | 8.287338e-51 | -8.615850e-47 |
| Msa0530560 | Msa0765080 | 0.800525 | 1.383764e-48 | -8.615850e-47 |
| Msa0530560 | Msa0765910 | 0.831717 | 1.425175e-55 | -8.615850e-47 |
| Msa0530560 | Msa0820770 | 0.800368 | 1.489381e-48 | -8.615850e-47 |
| Msa0530560 | Msa0829300 | 0.806180 | 9.324340e-50 | -8.615850e-47 |
| Msa0530560 | Msa0829330 | 0.805793 | 1.124448e-49 | -8.615850e-47 |
| Msa0530560 | Msa0832340 | 0.833170 | 6.220177e-56 | -8.615850e-47 |
| Msa0530560 | Msa0849040 | 0.839287 | 1.734211e-57 | -8.615850e-47 |
| Msa0530560 | Msa0878220 | 0.826473 | 2.660636e-54 | -8.615850e-47 |
| Msa0530560 | Msa0880020 | 0.801109 | 1.051376e-48 | -8.615850e-47 |
| Msa0530560 | Msa0898750 | 0.813689 | 2.253778e-51 | -8.615850e-47 |
| Msa0530560 | Msa0900400 | 0.809870 | 1.528104e-50 | -8.615850e-47 |
| Msa0530560 | Msa0901930 | 0.822394 | 2.424943e-53 | -8.615850e-47 |
| Msa0530560 | Msa0919860 | 0.808121 | 3.619304e-50 | -8.615850e-47 |
| Msa0530560 | Msa0928130 | 0.809307 | 2.018877e-50 | -8.615850e-47 |
| Msa0530560 | Msa0943970 | 0.817715 | 2.855808e-52 | -8.615850e-47 |
| Msa0530560 | Msa0944020 | 0.821114 | 4.794843e-53 | -8.615850e-47 |
| Msa0530560 | Msa0945630 | 0.826744 | 2.293035e-54 | -8.615850e-47 |
| Msa0530560 | Msa0963270 | 0.821452 | 4.007688e-53 | -8.615850e-47 |
| Msa0530560 | Msa0964310 | 0.831895 | 1.287812e-55 | -8.615850e-47 |
| Msa0530560 | Msa0980450 | 0.822739 | 2.016057e-53 | -8.615850e-47 |
| Msa0530560 | Msa1031660 | 0.813303 | 2.740303e-51 | -8.615850e-47 |
| Msa0530560 | Msa1046280 | 0.810236 | 1.274107e-50 | -8.615850e-47 |
| Msa0530560 | Msa1061270 | 0.810079 | 1.377737e-50 | -8.615850e-47 |
| Msa0530560 | Msa1070720 | 0.807575 | 4.727030e-50 | -8.615850e-47 |
| Msa0530560 | Msa1077130 | 0.832715 | 8.069226e-56 | -8.615850e-47 |
| Msa0530560 | Msa1077200 | 0.832972 | 6.966277e-56 | -8.615850e-47 |
| Msa0530560 | Msa1089460 | 0.809682 | 1.677408e-50 | -8.615850e-47 |
| Msa0530560 | Msa1101090 | 0.820532 | 6.525187e-53 | -8.615850e-47 |
| Msa0530560 | Msa1108760 | 0.820264 | 7.519873e-53 | -8.615850e-47 |
| Msa0530560 | Msa1109680 | 0.819967 | 8.793032e-53 | -8.615850e-47 |
| Msa0530560 | Msa1117240 | 0.819880 | 9.205698e-53 | -8.615850e-47 |
| Msa0530560 | Msa1122150 | 0.813384 | 2.630819e-51 | -8.615850e-47 |
| Msa0530560 | Msa1124960 | 0.838747 | 2.393484e-57 | -8.615850e-47 |
| Msa0530560 | Msa1142020 | 0.804587 | 2.011320e-49 | -8.615850e-47 |
| Msa0530560 | Msa1160560 | 0.800104 | 1.685370e-48 | -8.615850e-47 |
| Msa0530560 | Msa1167340 | 0.810953 | 8.919508e-51 | -8.615850e-47 |
| Msa0530560 | Msa1184230 | 0.801590 | 8.379909e-49 | -8.615850e-47 |
| Msa0530560 | Msa1189070 | 0.817656 | 2.945481e-52 | -8.615850e-47 |
| Msa0530560 | Msa1213890 | 0.809998 | 1.434105e-50 | -8.615850e-47 |
| Msa0530560 | Msa1243490 | 0.821596 | 3.712329e-53 | -8.615850e-47 |
| Msa0530560 | Msa1257750 | 0.833356 | 5.590730e-56 | -8.615850e-47 |
| Msa0530560 | Msa1271130 | 0.836308 | 1.009572e-56 | -8.615850e-47 |
| Msa0530560 | Msa1279400 | 0.804768 | 1.843747e-49 | -8.615850e-47 |
| Msa0530560 | Msa1284550 | 0.801133 | 1.039627e-48 | -8.615850e-47 |
| Msa0530560 | Msa1297050 | -0.804132 | 2.501839e-49 | -8.615850e-47 |
| Msa0530560 | Msa1305660 | 0.815806 | 7.655814e-52 | -8.615850e-47 |
| Msa0530560 | Msa1305700 | 0.801988 | 6.942839e-49 | -8.615850e-47 |
| Msa0530560 | Msa1305810 | 0.812445 | 4.223652e-51 | -8.615850e-47 |
| Msa0530560 | Msa1308870 | 0.806770 | 6.998905e-50 | -8.615850e-47 |
| Msa0530560 | Msa1325410 | -0.842216 | 2.960006e-58 | -8.615850e-47 |
| Msa0530560 | Msa1329200 | 0.828045 | 1.118423e-54 | -8.615850e-47 |
| Msa0530560 | Msa1333480 | 0.805473 | 1.312306e-49 | -8.615850e-47 |
| Msa0530560 | Msa1341950 | 0.805011 | 1.640130e-49 | -8.615850e-47 |
| Msa0530560 | Msa1347760 | 0.808698 | 2.726016e-50 | -8.615850e-47 |
| Msa0530560 | Msa1355180 | 0.813341 | 2.688433e-51 | -8.615850e-47 |
| Msa0530560 | Msa1357620 | 0.803226 | 3.856438e-49 | -8.615850e-47 |
| Msa0530560 | Msa1370070 | -0.817380 | 3.398254e-52 | -8.615850e-47 |
| Msa0530560 | Msa1372240 | 0.808486 | 3.025301e-50 | -8.615850e-47 |
| Msa0530560 | Msa1392980 | 0.809253 | 2.073488e-50 | -8.615850e-47 |
| Msa0530560 | Msa1419690 | 0.827608 | 1.424149e-54 | -8.615850e-47 |
| Msa0530560 | Msa1442920 | 0.830871 | 2.300132e-55 | -8.615850e-47 |
| Msa0530560 | Msa1452710 | 0.841458 | 4.693611e-58 | -8.615850e-47 |
| Msa0530560 | Msa1457620 | 0.814258 | 1.688577e-51 | -8.615850e-47 |
| Msa0530560 | Msa1458680 | 0.819428 | 1.167584e-52 | -8.615850e-47 |
| Msa0530560 | Msa1462290 | 0.835685 | 1.453172e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530560 | MtrunA17_Chr4g0003351 | 90.909 | 154 | 2 | 1 | 84 | 225 | 6 | 159 | 1.78e-99 | 286 |
| Msa0530560 | MtrunA17_Chr4g0063831 | 43.871 | 155 | 72 | 2 | 85 | 224 | 17 | 171 | 4.94e-40 | 135 |
| Msa0530560 | MtrunA17_Chr3g0137781 | 43.312 | 157 | 71 | 4 | 86 | 225 | 22 | 177 | 4.05e-37 | 128 |
| Msa0530560 | MtrunA17_Chr1g0149341 | 46.324 | 136 | 57 | 2 | 105 | 225 | 7 | 141 | 1.16e-29 | 107 |
| Msa0530560 | MtrunA17_Chr1g0199151 | 42.466 | 73 | 40 | 2 | 154 | 225 | 15 | 86 | 1.69e-15 | 69.3 |
| Msa0530560 | MtrunA17_Chr7g0264721 | 34.259 | 108 | 64 | 3 | 121 | 225 | 2 | 105 | 4.04e-14 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530560 | AT5G25360.3 | 55.921 | 152 | 53 | 4 | 86 | 225 | 67 | 216 | 1.82e-50 | 164 |
| Msa0530560 | AT5G25360.2 | 54.861 | 144 | 54 | 2 | 92 | 225 | 27 | 169 | 3.00e-47 | 154 |
| Msa0530560 | AT5G25360.1 | 54.861 | 144 | 54 | 2 | 92 | 225 | 27 | 169 | 3.00e-47 | 154 |
| Msa0530560 | AT1G15350.1 | 51.316 | 152 | 62 | 2 | 86 | 225 | 3 | 154 | 4.70e-44 | 145 |
| Msa0530560 | AT1G15350.2 | 51.316 | 152 | 62 | 2 | 86 | 225 | 3 | 154 | 4.70e-44 | 145 |
| Msa0530560 | AT4G32342.1 | 50.943 | 159 | 63 | 7 | 78 | 224 | 5 | 160 | 1.34e-38 | 131 |
| Msa0530560 | AT4G32342.2 | 50.943 | 159 | 63 | 7 | 78 | 224 | 43 | 198 | 2.99e-38 | 132 |
| Msa0530560 | AT3G15770.1 | 46.541 | 159 | 66 | 4 | 85 | 224 | 3 | 161 | 1.05e-36 | 127 |
| Msa0530560 | AT3G15770.2 | 46.497 | 157 | 65 | 4 | 87 | 224 | 4 | 160 | 2.63e-36 | 125 |
| Msa0530560 | AT1G15350.6 | 55.556 | 108 | 36 | 2 | 130 | 225 | 1 | 108 | 6.96e-31 | 110 |
| Msa0530560 | AT1G15350.3 | 55.556 | 108 | 36 | 2 | 130 | 225 | 1 | 108 | 6.96e-31 | 110 |
| Msa0530560 | AT1G15350.5 | 55.556 | 108 | 36 | 2 | 130 | 225 | 1 | 108 | 6.96e-31 | 110 |
| Msa0530560 | AT1G15350.4 | 55.556 | 108 | 36 | 2 | 130 | 225 | 1 | 108 | 6.96e-31 | 110 |
| Msa0530560 | AT5G03440.2 | 49.495 | 99 | 40 | 4 | 134 | 225 | 3 | 98 | 1.23e-24 | 94.0 |
| Msa0530560 | AT5G03440.3 | 49.495 | 99 | 40 | 4 | 134 | 225 | 3 | 98 | 1.23e-24 | 94.0 |
| Msa0530560 | AT5G03440.1 | 49.495 | 99 | 40 | 4 | 134 | 225 | 3 | 98 | 1.23e-24 | 94.0 |
| Msa0530560 | AT3G54880.1 | 40.909 | 88 | 50 | 2 | 138 | 225 | 27 | 112 | 1.35e-18 | 78.6 |
Find 64 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGCAGATCTAATTTAATT+AGG | 0.167032 | 4_1:-4609571 | Msa0530560:CDS |
| CCAGTACATCAGAAGATTTC+TGG | 0.233221 | 4_1:-4608425 | Msa0530560:CDS |
| TGGCTACAGGTCTAATTCTA+TGG | 0.253969 | 4_1:-4607373 | Msa0530560:intron |
| AGAGAGAAATTACACTCTTT+TGG | 0.276883 | 4_1:+4606395 | None:intergenic |
| TGAAGAGATGGGATTGCTTT+TGG | 0.283969 | 4_1:+4609803 | None:intergenic |
| ACACAATCTTCACATCTAAA+AGG | 0.310624 | 4_1:-4609734 | Msa0530560:intron |
| TGGCAGATCTAATTTAATTA+GGG | 0.319342 | 4_1:-4609570 | Msa0530560:intron |
| GACCACAAGCACGCATGATA+TGG | 0.336073 | 4_1:-4608403 | Msa0530560:CDS |
| GTTCTTGCTTCTGTAGGAAC+AGG | 0.345659 | 4_1:-4606465 | Msa0530560:three_prime_UTR |
| CAAGAACTACAATTATTTCA+TGG | 0.350778 | 4_1:+4606481 | None:intergenic |
| GATGTTATTCACCTTAATTT+AGG | 0.359102 | 4_1:+4607284 | None:intergenic |
| AATTGTTGTGTTCGATTCTC+AGG | 0.364653 | 4_1:+4607314 | None:intergenic |
| CCAGAAATCTTCTGATGTAC+TGG | 0.367815 | 4_1:+4608425 | None:intergenic |
| TCTTGTGGACATTTGGGAAC+AGG | 0.394685 | 4_1:-4606561 | Msa0530560:CDS |
| AATTACGAGAGCCTAAATTA+AGG | 0.395920 | 4_1:-4607295 | Msa0530560:intron |
| TGATTGTCCTGGTTTCTCTC+TGG | 0.404723 | 4_1:-4606335 | Msa0530560:three_prime_UTR |
| ATTGTAGTTCTTGCTTCTGT+AGG | 0.442960 | 4_1:-4606471 | Msa0530560:three_prime_UTR |
| AGAGTGTAATTTCTCTCTGC+AGG | 0.450789 | 4_1:-4606390 | Msa0530560:three_prime_UTR |
| GGAATCAGACTCGGCAGCGT+TGG | 0.451348 | 4_1:-4607352 | Msa0530560:CDS |
| GAATCAGACTCGGCAGCGTT+GGG | 0.452328 | 4_1:-4607351 | Msa0530560:CDS |
| ACTGTGGAAGTACCAACAAC+AGG | 0.460725 | 4_1:-4608480 | Msa0530560:CDS |
| CTTTATTTAATTGATTGTCC+TGG | 0.478344 | 4_1:-4606346 | Msa0530560:three_prime_UTR |
| CTGTATGACTGAGCCGTTGA+AGG | 0.494149 | 4_1:-4606533 | Msa0530560:exon |
| CTTCAACGGCTCAGTCATAC+AGG | 0.494492 | 4_1:+4606534 | None:intergenic |
| TTTCTCTTCAATTTCGATTG+TGG | 0.499925 | 4_1:-4609590 | Msa0530560:CDS |
| CAGAAATCTTCTGATGTACT+GGG | 0.501490 | 4_1:+4608426 | None:intergenic |
| AAGGTTGAGGATGTGCCGTT+TGG | 0.502583 | 4_1:-4606514 | Msa0530560:three_prime_UTR |
| TCAGGTCTGATGTGAAGAGA+TGG | 0.506419 | 4_1:+4609791 | None:intergenic |
| ATGCTTACAGCGAGAGGGAT+AGG | 0.506679 | 4_1:+4606865 | None:intergenic |
| CAGACTCGGCAGCGTTGGGT+TGG | 0.511397 | 4_1:-4607347 | Msa0530560:CDS |
| GTTGTGTTGGATGCTATAAA+AGG | 0.523538 | 4_1:-4608515 | Msa0530560:CDS |
| AGGGTTGACAAAACAAGGTA+AGG | 0.550564 | 4_1:-4608460 | Msa0530560:CDS |
| GACTGAGCCGTTGAAGGTTG+AGG | 0.552481 | 4_1:-4606527 | Msa0530560:exon |
| TAACAGAGCAGTGGTTGTGT+TGG | 0.566752 | 4_1:-4608528 | Msa0530560:intron |
| CATGGATCAAACAAACCAAA+CGG | 0.567448 | 4_1:+4606499 | None:intergenic |
| AACAGTGCTGTTCAATCACA+AGG | 0.569798 | 4_1:-4608378 | Msa0530560:CDS |
| CAGGTCTGATGTGAAGAGAT+GGG | 0.570558 | 4_1:+4609792 | None:intergenic |
| TCGGTAATGAAACCGACGAT+AGG | 0.573001 | 4_1:+4609756 | None:intergenic |
| GTCCATATCATGCGTGCTTG+TGG | 0.576778 | 4_1:+4608401 | None:intergenic |
| TTCTTGCTTCTGTAGGAACA+GGG | 0.586193 | 4_1:-4606464 | Msa0530560:three_prime_UTR |
| GGTTGTTGGAAGAACTGGCA+TGG | 0.586251 | 4_1:+4608313 | None:intergenic |
| TGTTGGATGCTATAAAAGGC+CGG | 0.591005 | 4_1:-4608511 | Msa0530560:CDS |
| GACAAAACAAGGTAAGGCAG+TGG | 0.597556 | 4_1:-4608454 | Msa0530560:CDS |
| CTTGCTTCTGTAGGAACAGG+GGG | 0.600101 | 4_1:-4606462 | Msa0530560:three_prime_UTR |
| TTCTCTCTGGTATCCACAAG+AGG | 0.601379 | 4_1:-4606322 | Msa0530560:three_prime_UTR |
| ACAACAGGGTTGACAAAACA+AGG | 0.612108 | 4_1:-4608465 | Msa0530560:CDS |
| TAATTCTATGGAATCAGACT+CGG | 0.616536 | 4_1:-4607361 | Msa0530560:CDS |
| TTTAGATGTGAAGATTGTGT+CGG | 0.616911 | 4_1:+4609737 | None:intergenic |
| ACTTCCACAGTAACTAGTGC+CGG | 0.617912 | 4_1:+4608492 | None:intergenic |
| CAGCGAGAGGGATAGGCTGA+CGG | 0.622095 | 4_1:+4606872 | None:intergenic |
| GTGGACATTTGGGAACAGGA+TGG | 0.627320 | 4_1:-4606557 | Msa0530560:CDS |
| GGCACATCCTCAACCTTCAA+CGG | 0.627918 | 4_1:+4606520 | None:intergenic |
| AAGTTGATGCTTACAGCGAG+AGG | 0.634340 | 4_1:+4606859 | None:intergenic |
| AGAGGGATAGGCTGACGGAA+TGG | 0.635867 | 4_1:+4606877 | None:intergenic |
| AAGTCTAACTAATCAAGCTG+TGG | 0.637050 | 4_1:-4608340 | Msa0530560:CDS |
| GTTGTTGGAAGAACTGGCAT+GGG | 0.640403 | 4_1:+4608314 | None:intergenic |
| CTGTGGAAGTACCAACAACA+GGG | 0.643787 | 4_1:-4608479 | Msa0530560:CDS |
| AGAGAAAGAAAACCTATCGT+CGG | 0.648510 | 4_1:-4609768 | Msa0530560:CDS |
| AGTTGATGCTTACAGCGAGA+GGG | 0.648620 | 4_1:+4606860 | None:intergenic |
| TGTGATTTGTAACAGAGCAG+TGG | 0.661472 | 4_1:-4608537 | Msa0530560:intron |
| AAGGCCGGCACTAGTTACTG+TGG | 0.673031 | 4_1:-4608496 | Msa0530560:CDS |
| TCTTGCTTCTGTAGGAACAG+GGG | 0.677688 | 4_1:-4606463 | Msa0530560:three_prime_UTR |
| GTGGATACCAGAGAGAAACC+AGG | 0.714044 | 4_1:+4606328 | None:intergenic |
| ACAGTGCTGTTCAATCACAA+GGG | 0.754566 | 4_1:-4608377 | Msa0530560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAAATGATTTATGTT+TGG | - | chr4_1:4606985-4607004 | Msa0530560:intron | 10.0% |
| !!! | TTTATCTATGAAAATATTTT+TGG | - | chr4_1:4608798-4608817 | Msa0530560:intron | 10.0% |
| !!! | TTAATTAGGGTTTTTTATTT+TGG | - | chr4_1:4606634-4606653 | Msa0530560:intron | 15.0% |
| !!! | TAATTAGGGTTTTTTATTTT+GGG | - | chr4_1:4606635-4606654 | Msa0530560:intron | 15.0% |
| !! | AAAGGAAATTAAATCAAAAA+AGG | + | chr4_1:4606743-4606762 | None:intergenic | 15.0% |
| !! | AATACAAATATTACAAACAT+GGG | + | chr4_1:4608665-4608684 | None:intergenic | 15.0% |
| !! | TAATACAAATATTACAAACA+TGG | + | chr4_1:4608666-4608685 | None:intergenic | 15.0% |
| !!! | ATAAGTTTTCATATACTTTA+GGG | - | chr4_1:4609463-4609482 | Msa0530560:intron | 15.0% |
| !!! | AATTAGGGTTTTTTATTTTG+GGG | - | chr4_1:4606636-4606655 | Msa0530560:intron | 20.0% |
| !!! | TAATTTCCTTTTTAGCTTTT+TGG | - | chr4_1:4606752-4606771 | Msa0530560:intron | 20.0% |
| !!! | AATTTCCTTTTTAGCTTTTT+GGG | - | chr4_1:4606753-4606772 | Msa0530560:intron | 20.0% |
| !!! | GGTAAACTTAAAATTGATTT+CGG | + | chr4_1:4607147-4607166 | None:intergenic | 20.0% |
| !! | AACATAATTGAATGAATGTT+TGG | + | chr4_1:4607201-4607220 | None:intergenic | 20.0% |
| !! | AACATTCATTCAATTATGTT+AGG | - | chr4_1:4607201-4607220 | Msa0530560:intron | 20.0% |
| !! | ATGTGATTATAATTATGATG+TGG | - | chr4_1:4607614-4607633 | Msa0530560:intron | 20.0% |
| !! | TGAACACATTATGTATTAAA+GGG | + | chr4_1:4608037-4608056 | None:intergenic | 20.0% |
| !! | ATGAACACATTATGTATTAA+AGG | + | chr4_1:4608038-4608057 | None:intergenic | 20.0% |
| !! | TAATACATAATGTGTTCATT+TGG | - | chr4_1:4608039-4608058 | Msa0530560:intron | 20.0% |
| !! | AATACATAATGTGTTCATTT+GGG | - | chr4_1:4608040-4608059 | Msa0530560:intron | 20.0% |
| !! | AAAATGCATTTAATTACGAT+GGG | - | chr4_1:4608194-4608213 | Msa0530560:intron | 20.0% |
| !!! | TATCAAATGATATCTTTTGA+AGG | - | chr4_1:4608518-4608537 | Msa0530560:CDS | 20.0% |
| !! | AATAAAAGCTTACAGAAATA+TGG | + | chr4_1:4609005-4609024 | None:intergenic | 20.0% |
| !!! | TTCTATAAGTGATTTTAACT+TGG | - | chr4_1:4609099-4609118 | Msa0530560:intron | 20.0% |
| !! | GTGAAACTAAGTATTTAAAT+TGG | - | chr4_1:4609132-4609151 | Msa0530560:intron | 20.0% |
| !! | ATATACTTTAGATCCTAAAT+TGG | + | chr4_1:4609402-4609421 | None:intergenic | 20.0% |
| !!! | GATAAGTTTTCATATACTTT+AGG | - | chr4_1:4609462-4609481 | Msa0530560:intron | 20.0% |
| !! | TAATAACTTAAGAGACTAAA+TGG | - | chr4_1:4609504-4609523 | Msa0530560:intron | 20.0% |
| !! | TTCAATCAAAATTGCATAAA+TGG | + | chr4_1:4609552-4609571 | None:intergenic | 20.0% |
| !!! | TTTCAATTTTAGGATTGCTT+TGG | - | chr4_1:4606554-4606573 | Msa0530560:CDS | 25.0% |
| ! | TGGCAGATCTAATTTAATTA+GGG | - | chr4_1:4606621-4606640 | Msa0530560:intron | 25.0% |
| !!! | ATTAGGGTTTTTTATTTTGG+GGG | - | chr4_1:4606637-4606656 | Msa0530560:intron | 25.0% |
| ! | CTTTATAAAGTTACTATGAC+TGG | + | chr4_1:4606704-4606723 | None:intergenic | 25.0% |
| !! | AATGCCTAAATTTCTGTTTT+AGG | - | chr4_1:4606851-4606870 | Msa0530560:intron | 25.0% |
| ! | CATTCCTAAAACAGAAATTT+AGG | + | chr4_1:4606858-4606877 | None:intergenic | 25.0% |
| !!! | CTAAATTTCTGTTTTAGGAA+TGG | - | chr4_1:4606856-4606875 | Msa0530560:intron | 25.0% |
| ! | TTGAGATTAATAATCACGTT+TGG | - | chr4_1:4607042-4607061 | Msa0530560:intron | 25.0% |
| ! | GCTAAAAATCAATTCTCTAA+TGG | - | chr4_1:4607087-4607106 | Msa0530560:intron | 25.0% |
| !! | AAAATTGATTTCGGTATGTT+AGG | + | chr4_1:4607138-4607157 | None:intergenic | 25.0% |
| ! | AAAGATTAAAGTGACTACAT+TGG | - | chr4_1:4607238-4607257 | Msa0530560:intron | 25.0% |
| ! | ATACATAATGTGTTCATTTG+GGG | - | chr4_1:4608041-4608060 | Msa0530560:intron | 25.0% |
| ! | TGTAAACGATGATAACATTA+AGG | - | chr4_1:4608074-4608093 | Msa0530560:intron | 25.0% |
| ! | GTAAACGATGATAACATTAA+GGG | - | chr4_1:4608075-4608094 | Msa0530560:intron | 25.0% |
| ! | GAAAATGCATTTAATTACGA+TGG | - | chr4_1:4608193-4608212 | Msa0530560:intron | 25.0% |
| !!! | AGTCAGTATGCATTTATTTT+GGG | + | chr4_1:4608269-4608288 | None:intergenic | 25.0% |
| !! | AAGTCAGTATGCATTTATTT+TGG | + | chr4_1:4608270-4608289 | None:intergenic | 25.0% |
| !! | AGGCAGTTTTTGAATAAATA+GGG | + | chr4_1:4608305-4608324 | None:intergenic | 25.0% |
| !! | TAGGCAGTTTTTGAATAAAT+AGG | + | chr4_1:4608306-4608325 | None:intergenic | 25.0% |
| ! | CTAAGTTTCATGTAAATTGT+TGG | - | chr4_1:4608690-4608709 | Msa0530560:intron | 25.0% |
| ! | ATGACTAATGGTCATTATAT+AGG | + | chr4_1:4608766-4608785 | None:intergenic | 25.0% |
| !!! | ATGAAAATATTTTTGGCTAC+AGG | - | chr4_1:4608805-4608824 | Msa0530560:intron | 25.0% |
| ! | GATGTTATTCACCTTAATTT+AGG | + | chr4_1:4608910-4608929 | None:intergenic | 25.0% |
| ! | TTCCAATAGAATTAATCCAA+CGG | + | chr4_1:4608937-4608956 | None:intergenic | 25.0% |
| !!! | TTCTGTAATTTTGTTTGTGT+TGG | - | chr4_1:4608966-4608985 | Msa0530560:intron | 25.0% |
| !!! | TCTGTAATTTTGTTTGTGTT+GGG | - | chr4_1:4608967-4608986 | Msa0530560:intron | 25.0% |
| ! | CACTTATAGAAGATAACTTA+CGG | + | chr4_1:4609090-4609109 | None:intergenic | 25.0% |
| ! | TTCTTTAGACACTAAATTGA+TGG | + | chr4_1:4609370-4609389 | None:intergenic | 25.0% |
| ! | TAAGTATTTCCTGAAATGTT+AGG | - | chr4_1:4609430-4609449 | Msa0530560:intron | 25.0% |
| ! | AAGTATTTCCTGAAATGTTA+GGG | - | chr4_1:4609431-4609450 | Msa0530560:intron | 25.0% |
| !! | ATATACTTTAGGGACTAAAT+TGG | - | chr4_1:4609473-4609492 | Msa0530560:intron | 25.0% |
| !!! | TATTAATCAGTTTTGATAGG+AGG | + | chr4_1:4609595-4609614 | None:intergenic | 25.0% |
| ! | TCCTATCAAAACTGATTAAT+AGG | - | chr4_1:4609594-4609613 | Msa0530560:CDS | 25.0% |
| !!! | TCCTATTAATCAGTTTTGAT+AGG | + | chr4_1:4609598-4609617 | None:intergenic | 25.0% |
| ! | CAAAACTGATTAATAGGAAA+TGG | - | chr4_1:4609600-4609619 | Msa0530560:CDS | 25.0% |
| ! | CAAGAACTACAATTATTTCA+TGG | + | chr4_1:4609713-4609732 | None:intergenic | 25.0% |
| !! | CTTTATTTAATTGATTGTCC+TGG | - | chr4_1:4609845-4609864 | Msa0530560:CDS | 25.0% |
| TTTAGATGTGAAGATTGTGT+CGG | + | chr4_1:4606457-4606476 | None:intergenic | 30.0% | |
| ACACAATCTTCACATCTAAA+AGG | - | chr4_1:4606457-4606476 | Msa0530560:three_prime_UTR | 30.0% | |
| ! | AGAGAGAAAGTGCATAAAAA+AGG | + | chr4_1:4606485-4606504 | None:intergenic | 30.0% |
| !!! | TTTTAGGATTGCTTTGGTAT+TGG | - | chr4_1:4606560-4606579 | Msa0530560:CDS | 30.0% |
| TTTCTCTTCAATTTCGATTG+TGG | - | chr4_1:4606601-4606620 | Msa0530560:intron | 30.0% | |
| GTGGCAGATCTAATTTAATT+AGG | - | chr4_1:4606620-4606639 | Msa0530560:intron | 30.0% | |
| TTTCAGATACTACATGCATA+TGG | - | chr4_1:4606662-4606681 | Msa0530560:intron | 30.0% | |
| TTCAGATACTACATGCATAT+GGG | - | chr4_1:4606663-4606682 | Msa0530560:intron | 30.0% | |
| AGAAACCCAAAAAGCTAAAA+AGG | + | chr4_1:4606761-4606780 | None:intergenic | 30.0% | |
| ! | TACCTTTTTCTCTTGAAGAT+GGG | - | chr4_1:4606817-4606836 | Msa0530560:intron | 30.0% |
| !!! | AATTTCTGTTTTAGGAATGG+AGG | - | chr4_1:4606859-4606878 | Msa0530560:intron | 30.0% |
| ! | TAAGTTTACCGAATCACTTT+TGG | - | chr4_1:4607157-4607176 | Msa0530560:intron | 30.0% |
| ! | AATGTTTGGATTGACCTTTT+AGG | + | chr4_1:4607187-4607206 | None:intergenic | 30.0% |
| TTTCTTATCCCAAAATCGAT+CGG | + | chr4_1:4607272-4607291 | None:intergenic | 30.0% | |
| GGATAAGAAATTGATGTGTT+TGG | - | chr4_1:4607282-4607301 | Msa0530560:intron | 30.0% | |
| ! | ATTGATGTGTTTGGTAGTAT+TGG | - | chr4_1:4607291-4607310 | Msa0530560:intron | 30.0% |
| AATATAGCATTATCGCATAG+CGG | + | chr4_1:4607354-4607373 | None:intergenic | 30.0% | |
| ATAATGCTATATTGCTGCTA+TGG | - | chr4_1:4607361-4607380 | Msa0530560:CDS | 30.0% | |
| CATGATTTACAAATTCAGAG+GGG | + | chr4_1:4607902-4607921 | None:intergenic | 30.0% | |
| CCATGATTTACAAATTCAGA+GGG | + | chr4_1:4607903-4607922 | None:intergenic | 30.0% | |
| ACCATGATTTACAAATTCAG+AGG | + | chr4_1:4607904-4607923 | None:intergenic | 30.0% | |
| TACATAATGTGTTCATTTGG+GGG | - | chr4_1:4608042-4608061 | Msa0530560:intron | 30.0% | |
| ! | TTGGGGACTAAATATTGATT+GGG | + | chr4_1:4608251-4608270 | None:intergenic | 30.0% |
| TTTGGGGACTAAATATTGAT+TGG | + | chr4_1:4608252-4608271 | None:intergenic | 30.0% | |
| !!! | GTCAGTATGCATTTATTTTG+GGG | + | chr4_1:4608268-4608287 | None:intergenic | 30.0% |
| TAGGCAGCAGTTATTATATT+AGG | + | chr4_1:4608325-4608344 | None:intergenic | 30.0% | |
| ! | AGCATTTTTCTAATGTCGTT+AGG | + | chr4_1:4608366-4608385 | None:intergenic | 30.0% |
| ! | TTCTTCATGTACTTTCCTTT+TGG | - | chr4_1:4608555-4608574 | Msa0530560:intron | 30.0% |
| ! | TCTTCATGTACTTTCCTTTT+GGG | - | chr4_1:4608556-4608575 | Msa0530560:intron | 30.0% |
| ACACAATCATTTGTGAAATG+TGG | - | chr4_1:4608581-4608600 | Msa0530560:intron | 30.0% | |
| GATCAAATAGAAGATTCAGT+AGG | + | chr4_1:4608643-4608662 | None:intergenic | 30.0% | |
| AAGAGAACAAAATGCAAAAC+TGG | + | chr4_1:4608716-4608735 | None:intergenic | 30.0% | |
| CTTGAAAGTAAGATGACTAA+TGG | + | chr4_1:4608778-4608797 | None:intergenic | 30.0% | |
| TAATTCTATGGAATCAGACT+CGG | - | chr4_1:4608830-4608849 | Msa0530560:intron | 30.0% | |
| AATTACGAGAGCCTAAATTA+AGG | - | chr4_1:4608896-4608915 | Msa0530560:intron | 30.0% | |
| AAAGCCAAAAAAATTTGGCA+AGG | + | chr4_1:4609250-4609269 | None:intergenic | 30.0% | |
| ACTGCAAAGCCAAAAAAATT+TGG | + | chr4_1:4609255-4609274 | None:intergenic | 30.0% | |
| !!! | AATTTTTTTGGCTTTGCAGT+TGG | - | chr4_1:4609255-4609274 | Msa0530560:intron | 30.0% |
| ! | TAGATTTTCTTGTGGACATT+TGG | - | chr4_1:4609623-4609642 | Msa0530560:CDS | 30.0% |
| ! | AGATTTTCTTGTGGACATTT+GGG | - | chr4_1:4609624-4609643 | Msa0530560:CDS | 30.0% |
| ! | AGAGAGAAATTACACTCTTT+TGG | + | chr4_1:4609799-4609818 | None:intergenic | 30.0% |
| ! | GATAGGTTTTCTTTCTCTTC+AGG | + | chr4_1:4606421-4606440 | None:intergenic | 35.0% |
| AGAGAAAGAAAACCTATCGT+CGG | - | chr4_1:4606423-4606442 | Msa0530560:three_prime_UTR | 35.0% | |
| TCAGATACTACATGCATATG+GGG | - | chr4_1:4606664-4606683 | Msa0530560:intron | 35.0% | |
| ! | GTACCTTTTTCTCTTGAAGA+TGG | - | chr4_1:4606816-4606835 | Msa0530560:intron | 35.0% |
| AACCCATCTTCAAGAGAAAA+AGG | + | chr4_1:4606822-4606841 | None:intergenic | 35.0% | |
| ! | TAGGAAGCTGTGTATTTTTC+TGG | - | chr4_1:4606883-4606902 | Msa0530560:CDS | 35.0% |
| ! | AGGAAGCTGTGTATTTTTCT+GGG | - | chr4_1:4606884-4606903 | Msa0530560:CDS | 35.0% |
| TAGGAGAACCAAAAGTGATT+CGG | + | chr4_1:4607168-4607187 | None:intergenic | 35.0% | |
| !!! | TCACTTTTGGTTCTCCTAAA+AGG | - | chr4_1:4607170-4607189 | Msa0530560:intron | 35.0% |
| CATTCATCCAAATTCAGCTA+CGG | - | chr4_1:4607442-4607461 | Msa0530560:intron | 35.0% | |
| ATAGCGACTATTTGACAACA+CGG | - | chr4_1:4607474-4607493 | Msa0530560:intron | 35.0% | |
| CAACAGTAGCTGAATTTGAA+CGG | + | chr4_1:4607522-4607541 | None:intergenic | 35.0% | |
| ! | CAAACACAAGTGTTGCTAAA+TGG | + | chr4_1:4607562-4607581 | None:intergenic | 35.0% |
| CATTTAGCAACACTTGTGTT+TGG | - | chr4_1:4607560-4607579 | Msa0530560:intron | 35.0% | |
| CACTTGTGTTTGGATTATGA+TGG | - | chr4_1:4607570-4607589 | Msa0530560:intron | 35.0% | |
| GTTGTGTTGGATGCTATAAA+AGG | - | chr4_1:4607676-4607695 | Msa0530560:intron | 35.0% | |
| CAGAAATCTTCTGATGTACT+GGG | + | chr4_1:4607768-4607787 | None:intergenic | 35.0% | |
| AAGTCTAACTAATCAAGCTG+TGG | - | chr4_1:4607851-4607870 | Msa0530560:intron | 35.0% | |
| CCCTCTGAATTTGTAAATCA+TGG | - | chr4_1:4607900-4607919 | Msa0530560:intron | 35.0% | |
| !! | ACTTCATTGCTTTTGTTGTG+CGG | - | chr4_1:4607926-4607945 | Msa0530560:intron | 35.0% |
| ! | CATTCTGTGTTTCTATCAGA+TGG | + | chr4_1:4608165-4608184 | None:intergenic | 35.0% |
| CCAAGACTCTCAAATTTCTT+GGG | + | chr4_1:4608222-4608241 | None:intergenic | 35.0% | |
| CCAAGAAATTTGAGAGTCTT+GGG | - | chr4_1:4608220-4608239 | Msa0530560:intron | 35.0% | |
| AAGATATATCGGATGCATGT+TGG | - | chr4_1:4608428-4608447 | Msa0530560:CDS | 35.0% | |
| ! | GTTGGTGCTCATATATGAAA+TGG | - | chr4_1:4608446-4608465 | Msa0530560:CDS | 35.0% |
| ATGAAATGGTTTGAGCAACA+TGG | - | chr4_1:4608460-4608479 | Msa0530560:CDS | 35.0% | |
| AAATGATTGTGTAGCCCAAA+AGG | + | chr4_1:4608573-4608592 | None:intergenic | 35.0% | |
| AATTGTTGTGTTCGATTCTC+AGG | + | chr4_1:4608880-4608899 | None:intergenic | 35.0% | |
| ATAGAATTAATCCAACGGCA+AGG | + | chr4_1:4608932-4608951 | None:intergenic | 35.0% | |
| TGCCGTTGGATTAATTCTAT+TGG | - | chr4_1:4608932-4608951 | Msa0530560:intron | 35.0% | |
| ATTGTGTACCAAAGACATTG+TGG | - | chr4_1:4609045-4609064 | Msa0530560:intron | 35.0% | |
| AATTATAAGATGTCCGCATG+AGG | - | chr4_1:4609157-4609176 | Msa0530560:intron | 35.0% | |
| !!! | AGTGCCTTGCCAAATTTTTT+TGG | - | chr4_1:4609243-4609262 | Msa0530560:intron | 35.0% |
| AGAATCACTCTCTCCAATTT+AGG | - | chr4_1:4609386-4609405 | Msa0530560:intron | 35.0% | |
| ATGTTAGTCCCTAACATTTC+AGG | + | chr4_1:4609442-4609461 | None:intergenic | 35.0% | |
| ! | GGAAATGGTAGATTTTCTTG+TGG | - | chr4_1:4609615-4609634 | Msa0530560:CDS | 35.0% |
| CATGGATCAAACAAACCAAA+CGG | + | chr4_1:4609695-4609714 | None:intergenic | 35.0% | |
| ATTGTAGTTCTTGCTTCTGT+AGG | - | chr4_1:4609720-4609739 | Msa0530560:intron | 35.0% | |
| ! | TTTTCAAAACTTGCCTCTTG+TGG | + | chr4_1:4609885-4609904 | None:intergenic | 35.0% |
| ! | TGAAGAGATGGGATTGCTTT+TGG | + | chr4_1:4606391-4606410 | None:intergenic | 40.0% |
| !! | TTTCTCTTGAAGATGGGTTG+AGG | - | chr4_1:4606823-4606842 | Msa0530560:intron | 40.0% |
| !!! | CTGTTTTAGGAATGGAGGAT+AGG | - | chr4_1:4606864-4606883 | Msa0530560:intron | 40.0% |
| !! | GTTTGGTAGTATTGGCAACA+CGG | - | chr4_1:4607299-4607318 | Msa0530560:CDS | 40.0% |
| CACTAAACCGTAGCTGAATT+TGG | + | chr4_1:4607452-4607471 | None:intergenic | 40.0% | |
| CGTTCAAATTCAGCTACTGT+TGG | - | chr4_1:4607520-4607539 | Msa0530560:intron | 40.0% | |
| ! | ACACAAGTGTTGCTAAATGG+TGG | + | chr4_1:4607559-4607578 | None:intergenic | 40.0% |
| ! | TGTGATTTGTAACAGAGCAG+TGG | - | chr4_1:4607654-4607673 | Msa0530560:intron | 40.0% |
| TGTTGGATGCTATAAAAGGC+CGG | - | chr4_1:4607680-4607699 | Msa0530560:intron | 40.0% | |
| ! | TGTTTTGTCAACCCTGTTGT+TGG | + | chr4_1:4607726-4607745 | None:intergenic | 40.0% |
| ACAACAGGGTTGACAAAACA+AGG | - | chr4_1:4607726-4607745 | Msa0530560:intron | 40.0% | |
| AGGGTTGACAAAACAAGGTA+AGG | - | chr4_1:4607731-4607750 | Msa0530560:intron | 40.0% | |
| CCAGAAATCTTCTGATGTAC+TGG | + | chr4_1:4607769-4607788 | None:intergenic | 40.0% | |
| CCAGTACATCAGAAGATTTC+TGG | - | chr4_1:4607766-4607785 | Msa0530560:intron | 40.0% | |
| ! | AACAGTGCTGTTCAATCACA+AGG | - | chr4_1:4607813-4607832 | Msa0530560:intron | 40.0% |
| ! | ACAGTGCTGTTCAATCACAA+GGG | - | chr4_1:4607814-4607833 | Msa0530560:intron | 40.0% |
| TACAAATTCAGAGGGGTTGT+TGG | + | chr4_1:4607895-4607914 | None:intergenic | 40.0% | |
| ATAATGTGTTCATTTGGGGG+TGG | - | chr4_1:4608045-4608064 | Msa0530560:intron | 40.0% | |
| TAATGTGTTCATTTGGGGGT+GGG | - | chr4_1:4608046-4608065 | Msa0530560:intron | 40.0% | |
| ! | TCTCTTATAAGGGTGTGTTG+GGG | + | chr4_1:4608133-4608152 | None:intergenic | 40.0% |
| ! | CTCTCTTATAAGGGTGTGTT+GGG | + | chr4_1:4608134-4608153 | None:intergenic | 40.0% |
| CAACACACCCTTATAAGAGA+GGG | - | chr4_1:4608133-4608152 | Msa0530560:intron | 40.0% | |
| AACACACCCTTATAAGAGAG+GGG | - | chr4_1:4608134-4608153 | Msa0530560:intron | 40.0% | |
| CCCAAGAAATTTGAGAGTCT+TGG | - | chr4_1:4608219-4608238 | Msa0530560:intron | 40.0% | |
| CCCAAGACTCTCAAATTTCT+TGG | + | chr4_1:4608223-4608242 | None:intergenic | 40.0% | |
| GCTGCAGTTATTGTGTGATT+AGG | + | chr4_1:4608344-4608363 | None:intergenic | 40.0% | |
| TAACATGTTCCCTTAGAGCA+CGG | - | chr4_1:4608400-4608419 | Msa0530560:CDS | 40.0% | |
| ! | GTAGGCAAAAGCACATGAAT+AGG | + | chr4_1:4608625-4608644 | None:intergenic | 40.0% |
| TGGCTACAGGTCTAATTCTA+TGG | - | chr4_1:4608818-4608837 | Msa0530560:intron | 40.0% | |
| GTACCAAAGACATTGTGGTT+AGG | - | chr4_1:4609050-4609069 | Msa0530560:intron | 40.0% | |
| TTCTTGCTTCTGTAGGAACA+GGG | - | chr4_1:4609727-4609746 | Msa0530560:intron | 40.0% | |
| AGAGTGTAATTTCTCTCTGC+AGG | - | chr4_1:4609801-4609820 | Msa0530560:CDS | 40.0% | |
| CAGGTCTGATGTGAAGAGAT+GGG | + | chr4_1:4606402-4606421 | None:intergenic | 45.0% | |
| TCAGGTCTGATGTGAAGAGA+TGG | + | chr4_1:4606403-4606422 | None:intergenic | 45.0% | |
| TCGGTAATGAAACCGACGAT+AGG | + | chr4_1:4606438-4606457 | None:intergenic | 45.0% | |
| !! | AGCTTACGCCGATCGATTTT+GGG | - | chr4_1:4607261-4607280 | Msa0530560:intron | 45.0% |
| ACACGGATCGTGGAAAATAG+TGG | - | chr4_1:4607316-4607335 | Msa0530560:CDS | 45.0% | |
| TAACAGAGCAGTGGTTGTGT+TGG | - | chr4_1:4607663-4607682 | Msa0530560:intron | 45.0% | |
| ACTTCCACAGTAACTAGTGC+CGG | + | chr4_1:4607702-4607721 | None:intergenic | 45.0% | |
| !! | ACTGTGGAAGTACCAACAAC+AGG | - | chr4_1:4607711-4607730 | Msa0530560:intron | 45.0% |
| !! | CTGTGGAAGTACCAACAACA+GGG | - | chr4_1:4607712-4607731 | Msa0530560:intron | 45.0% |
| GACAAAACAAGGTAAGGCAG+TGG | - | chr4_1:4607737-4607756 | Msa0530560:intron | 45.0% | |
| GTTGTTGGAAGAACTGGCAT+GGG | + | chr4_1:4607880-4607899 | None:intergenic | 45.0% | |
| ! | TTATAAGGGTGTGTTGGGGA+GGG | + | chr4_1:4608129-4608148 | None:intergenic | 45.0% |
| ! | CCTCTCTTATAAGGGTGTGT+TGG | + | chr4_1:4608135-4608154 | None:intergenic | 45.0% |
| CCAACACACCCTTATAAGAG+AGG | - | chr4_1:4608132-4608151 | Msa0530560:intron | 45.0% | |
| ACACACCCTTATAAGAGAGG+GGG | - | chr4_1:4608135-4608154 | Msa0530560:intron | 45.0% | |
| AACATGTTCCCTTAGAGCAC+GGG | - | chr4_1:4608401-4608420 | Msa0530560:CDS | 45.0% | |
| GCACGGGTAGCAAGATATAT+CGG | - | chr4_1:4608417-4608436 | Msa0530560:CDS | 45.0% | |
| GTGAATAACATCCTTGCCGT+TGG | - | chr4_1:4608918-4608937 | Msa0530560:intron | 45.0% | |
| CAGCCTAACCACAATGTCTT+TGG | + | chr4_1:4609056-4609075 | None:intergenic | 45.0% | |
| TAAAGCCTATCTGCCTCATG+CGG | + | chr4_1:4609173-4609192 | None:intergenic | 45.0% | |
| ! | AGTTGATGCTTACAGCGAGA+GGG | + | chr4_1:4609334-4609353 | None:intergenic | 45.0% |
| !! | AAGTTGATGCTTACAGCGAG+AGG | + | chr4_1:4609335-4609354 | None:intergenic | 45.0% |
| TCTTGTGGACATTTGGGAAC+AGG | - | chr4_1:4609630-4609649 | Msa0530560:intron | 45.0% | |
| GTTCTTGCTTCTGTAGGAAC+AGG | - | chr4_1:4609726-4609745 | Msa0530560:intron | 45.0% | |
| TCTTGCTTCTGTAGGAACAG+GGG | - | chr4_1:4609728-4609747 | Msa0530560:intron | 45.0% | |
| TGATTGTCCTGGTTTCTCTC+TGG | - | chr4_1:4609856-4609875 | Msa0530560:CDS | 45.0% | |
| TTCTCTCTGGTATCCACAAG+AGG | - | chr4_1:4609869-4609888 | Msa0530560:CDS | 45.0% | |
| !!! | TTTATTTTTTTTTCAATTTT+AGG | - | chr4_1:4606544-4606563 | Msa0530560:CDS | 5.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr4_1:4606313-4606332 | Msa0530560:three_prime_UTR | 50.0% | |
| !! | GAGCTTACGCCGATCGATTT+TGG | - | chr4_1:4607260-4607279 | Msa0530560:intron | 50.0% |
| !! | AGTATTGGCAACACGGATCG+TGG | - | chr4_1:4607306-4607325 | Msa0530560:CDS | 50.0% |
| GACCACAAGCACGCATGATA+TGG | - | chr4_1:4607788-4607807 | Msa0530560:intron | 50.0% | |
| GTCCATATCATGCGTGCTTG+TGG | + | chr4_1:4607793-4607812 | None:intergenic | 50.0% | |
| GGTTGTTGGAAGAACTGGCA+TGG | + | chr4_1:4607881-4607900 | None:intergenic | 50.0% | |
| AGAGGGGTTGTTGGAAGAAC+TGG | + | chr4_1:4607886-4607905 | None:intergenic | 50.0% | |
| GGAGGTTTAGGAGAGGCTAA+TGG | + | chr4_1:4608108-4608127 | None:intergenic | 50.0% | |
| ! | CTTATAAGGGTGTGTTGGGG+AGG | + | chr4_1:4608130-4608149 | None:intergenic | 50.0% |
| CACACCCTTATAAGAGAGGG+GGG | - | chr4_1:4608136-4608155 | Msa0530560:intron | 50.0% | |
| ACACCCTTATAAGAGAGGGG+GGG | - | chr4_1:4608137-4608156 | Msa0530560:intron | 50.0% | |
| TCTTGCTACCCGTGCTCTAA+GGG | + | chr4_1:4608412-4608431 | None:intergenic | 50.0% | |
| ATCTTGCTACCCGTGCTCTA+AGG | + | chr4_1:4608413-4608432 | None:intergenic | 50.0% | |
| ATGCTTACAGCGAGAGGGAT+AGG | + | chr4_1:4609329-4609348 | None:intergenic | 50.0% | |
| GTGGACATTTGGGAACAGGA+TGG | - | chr4_1:4609634-4609653 | Msa0530560:intron | 50.0% | |
| CTTCAACGGCTCAGTCATAC+AGG | + | chr4_1:4609660-4609679 | None:intergenic | 50.0% | |
| CTGTATGACTGAGCCGTTGA+AGG | - | chr4_1:4609658-4609677 | Msa0530560:intron | 50.0% | |
| GGCACATCCTCAACCTTCAA+CGG | + | chr4_1:4609674-4609693 | None:intergenic | 50.0% | |
| ! | AAGGTTGAGGATGTGCCGTT+TGG | - | chr4_1:4609677-4609696 | Msa0530560:intron | 50.0% |
| CTTGCTTCTGTAGGAACAGG+GGG | - | chr4_1:4609729-4609748 | Msa0530560:intron | 50.0% | |
| TTCTGTAGGAACAGGGGGAA+GGG | - | chr4_1:4609734-4609753 | Msa0530560:intron | 50.0% | |
| GTGGATACCAGAGAGAAACC+AGG | + | chr4_1:4609866-4609885 | None:intergenic | 50.0% | |
| AAGGCCGGCACTAGTTACTG+TGG | - | chr4_1:4607695-4607714 | Msa0530560:intron | 55.0% | |
| TGTGTTGGGGAGGGAGGTTT+AGG | + | chr4_1:4608120-4608139 | None:intergenic | 55.0% | |
| CACCCTTATAAGAGAGGGGG+GGG | - | chr4_1:4608138-4608157 | Msa0530560:intron | 55.0% | |
| GTCCCCCCCCTCTCTTATAA+GGG | + | chr4_1:4608143-4608162 | None:intergenic | 55.0% | |
| GAATCAGACTCGGCAGCGTT+GGG | - | chr4_1:4608840-4608859 | Msa0530560:intron | 55.0% | |
| GATGTCCGCATGAGGCAGAT+AGG | - | chr4_1:4609165-4609184 | Msa0530560:intron | 55.0% | |
| AGAGGGATAGGCTGACGGAA+TGG | + | chr4_1:4609317-4609336 | None:intergenic | 55.0% | |
| GACTGAGCCGTTGAAGGTTG+AGG | - | chr4_1:4609664-4609683 | Msa0530560:intron | 55.0% | |
| CTTCTGTAGGAACAGGGGGA+AGG | - | chr4_1:4609733-4609752 | Msa0530560:intron | 55.0% | |
| TCTGTAGGAACAGGGGGAAG+GGG | - | chr4_1:4609735-4609754 | Msa0530560:CDS | 55.0% | |
| TGGGGAGGGAGGTTTAGGAG+AGG | + | chr4_1:4608115-4608134 | None:intergenic | 60.0% | |
| ! | TAAGGGTGTGTTGGGGAGGG+AGG | + | chr4_1:4608126-4608145 | None:intergenic | 60.0% |
| GGTCCCCCCCCTCTCTTATA+AGG | + | chr4_1:4608144-4608163 | None:intergenic | 60.0% | |
| GGAATCAGACTCGGCAGCGT+TGG | - | chr4_1:4608839-4608858 | Msa0530560:intron | 60.0% | |
| CAGCGAGAGGGATAGGCTGA+CGG | + | chr4_1:4609322-4609341 | None:intergenic | 60.0% | |
| ! | CAGACTCGGCAGCGTTGGGT+TGG | - | chr4_1:4608844-4608863 | Msa0530560:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 4606307 | 4609906 | 4606307 | ID=Msa0530560;Name=Msa0530560 |
| chr4_1 | mRNA | 4606307 | 4609906 | 4606307 | ID=Msa0530560-mRNA-1;Parent=Msa0530560;Name=Msa0530560-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.6|0.5|1|0|0.16|6|237|225 |
| chr4_1 | exon | 4606307 | 4606597 | 4606307 | ID=Msa0530560-mRNA-1:exon:1417;Parent=Msa0530560-mRNA-1 |
| chr4_1 | exon | 4606873 | 4606939 | 4606873 | ID=Msa0530560-mRNA-1:exon:1416;Parent=Msa0530560-mRNA-1 |
| chr4_1 | exon | 4607296 | 4607386 | 4607296 | ID=Msa0530560-mRNA-1:exon:1415;Parent=Msa0530560-mRNA-1 |
| chr4_1 | exon | 4608328 | 4608544 | 4608328 | ID=Msa0530560-mRNA-1:exon:1414;Parent=Msa0530560-mRNA-1 |
| chr4_1 | exon | 4609571 | 4609647 | 4609571 | ID=Msa0530560-mRNA-1:exon:1413;Parent=Msa0530560-mRNA-1 |
| chr4_1 | exon | 4609735 | 4609906 | 4609735 | ID=Msa0530560-mRNA-1:exon:1412;Parent=Msa0530560-mRNA-1 |
| chr4_1 | CDS | 4609735 | 4609906 | 4609735 | ID=Msa0530560-mRNA-1:cds;Parent=Msa0530560-mRNA-1 |
| chr4_1 | CDS | 4609571 | 4609647 | 4609571 | ID=Msa0530560-mRNA-1:cds;Parent=Msa0530560-mRNA-1 |
| chr4_1 | CDS | 4608328 | 4608544 | 4608328 | ID=Msa0530560-mRNA-1:cds;Parent=Msa0530560-mRNA-1 |
| chr4_1 | CDS | 4607296 | 4607386 | 4607296 | ID=Msa0530560-mRNA-1:cds;Parent=Msa0530560-mRNA-1 |
| chr4_1 | CDS | 4606873 | 4606939 | 4606873 | ID=Msa0530560-mRNA-1:cds;Parent=Msa0530560-mRNA-1 |
| chr4_1 | CDS | 4606544 | 4606597 | 4606544 | ID=Msa0530560-mRNA-1:cds;Parent=Msa0530560-mRNA-1 |
| chr4_1 | three_prime_UTR | 4606307 | 4606543 | 4606307 | ID=Msa0530560-mRNA-1:three_prime_utr;Parent=Msa0530560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
