Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901370 | XP_003620871.1 | 88.846 | 260 | 7 | 1 | 1 | 260 | 1 | 238 | 3.61e-162 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901370 | sp|Q9C5D7|CAMT3_ARATH | 57.143 | 245 | 83 | 1 | 15 | 259 | 9 | 231 | 8.05e-98 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901370 | G7KJ71 | 88.846 | 260 | 7 | 1 | 1 | 260 | 1 | 238 | 1.72e-162 | 459 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0901370 | Msa0925840 | 0.827316 | 1.673769e-54 | -8.615850e-47 |
| Msa0901370 | Msa0966050 | 0.800318 | 1.524338e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901370 | MtrunA17_Chr6g0487981 | 88.846 | 260 | 7 | 1 | 1 | 260 | 1 | 238 | 3.32e-166 | 459 |
| Msa0901370 | MtrunA17_Chr8g0344401 | 64.082 | 245 | 65 | 2 | 15 | 258 | 11 | 233 | 1.36e-108 | 313 |
| Msa0901370 | MtrunA17_Chr8g0389361 | 65.217 | 253 | 66 | 1 | 8 | 260 | 10 | 240 | 4.56e-104 | 302 |
| Msa0901370 | MtrunA17_Chr4g0044581 | 50.813 | 246 | 98 | 2 | 15 | 259 | 23 | 246 | 1.34e-85 | 255 |
| Msa0901370 | MtrunA17_Chr4g0053031 | 51.394 | 251 | 97 | 3 | 12 | 260 | 21 | 248 | 6.89e-85 | 253 |
| Msa0901370 | MtrunA17_Chr4g0053331 | 50.202 | 247 | 98 | 3 | 15 | 259 | 19 | 242 | 3.84e-81 | 244 |
| Msa0901370 | MtrunA17_Chr4g0053241 | 49.200 | 250 | 102 | 3 | 12 | 259 | 21 | 247 | 3.60e-76 | 231 |
| Msa0901370 | MtrunA17_Chr4g0053021 | 49.798 | 247 | 99 | 3 | 15 | 259 | 22 | 245 | 1.11e-75 | 230 |
| Msa0901370 | MtrunA17_Chr4g0051041 | 45.935 | 246 | 107 | 4 | 15 | 257 | 5 | 227 | 5.59e-69 | 212 |
| Msa0901370 | MtrunA17_Chr2g0312921 | 33.613 | 238 | 127 | 3 | 21 | 258 | 91 | 297 | 2.74e-43 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901370 | AT4G26220.1 | 57.143 | 245 | 83 | 1 | 15 | 259 | 9 | 231 | 8.18e-99 | 288 |
| Msa0901370 | AT4G34050.1 | 50.202 | 247 | 100 | 2 | 15 | 260 | 35 | 259 | 2.26e-86 | 258 |
| Msa0901370 | AT4G34050.3 | 50.202 | 247 | 100 | 2 | 15 | 260 | 62 | 286 | 3.18e-86 | 258 |
| Msa0901370 | AT1G67980.1 | 50.000 | 248 | 95 | 3 | 15 | 259 | 10 | 231 | 2.45e-82 | 247 |
| Msa0901370 | AT1G24735.1 | 49.194 | 248 | 99 | 4 | 15 | 259 | 16 | 239 | 2.91e-77 | 234 |
| Msa0901370 | AT1G24735.2 | 41.611 | 298 | 98 | 4 | 15 | 259 | 16 | 290 | 9.90e-71 | 219 |
| Msa0901370 | AT1G67990.1 | 45.565 | 248 | 107 | 3 | 15 | 259 | 10 | 232 | 9.21e-70 | 215 |
| Msa0901370 | AT1G24735.3 | 51.000 | 200 | 75 | 2 | 60 | 259 | 18 | 194 | 5.32e-67 | 206 |
| Msa0901370 | AT1G67980.2 | 47.120 | 191 | 68 | 4 | 73 | 259 | 2 | 163 | 1.16e-50 | 164 |
| Msa0901370 | AT3G62000.1 | 33.852 | 257 | 136 | 5 | 4 | 258 | 53 | 277 | 4.74e-44 | 150 |
| Msa0901370 | AT3G61990.1 | 33.984 | 256 | 134 | 5 | 4 | 258 | 68 | 289 | 5.49e-42 | 145 |
| Msa0901370 | AT3G62000.2 | 33.198 | 247 | 131 | 5 | 4 | 248 | 53 | 267 | 3.95e-37 | 134 |
| Msa0901370 | AT4G34050.2 | 43.151 | 146 | 60 | 2 | 116 | 260 | 25 | 148 | 1.89e-34 | 121 |
Find 46 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTCCAGCTCTACCAATTT+TGG | 0.186253 | 6_1:-98086259 | Msa0901370:CDS |
| GACAGGAAAACTTATGAAAT+TGG | 0.203207 | 6_1:-98086333 | Msa0901370:CDS |
| ATTCTTAGCTCTCATAATTA+AGG | 0.258836 | 6_1:-98087410 | Msa0901370:intron |
| TCTAGCAGTTTATCCAAAAT+TGG | 0.261995 | 6_1:+98086246 | None:intergenic |
| TCAAATGTTCCTTCATTTGT+AGG | 0.273170 | 6_1:+98085421 | None:intergenic |
| ACTGATAATCAAATAACTTT+AGG | 0.273686 | 6_1:+98085123 | None:intergenic |
| AATGGTATTGCAGTATATAT+TGG | 0.318254 | 6_1:-98087056 | Msa0901370:intron |
| TTGAGAGGCTCAGGCTCTCT+AGG | 0.392368 | 6_1:+98087019 | None:intergenic |
| CTCAGCTCTTTGAGAGGCTC+AGG | 0.393899 | 6_1:+98087010 | None:intergenic |
| TGCACTGGAACATTCTCTTC+AGG | 0.394174 | 6_1:+98085274 | None:intergenic |
| GTTGATTGATTGTAGAGAAA+TGG | 0.395099 | 6_1:-98087229 | Msa0901370:intron |
| GAATTTGCTCTCACTTCTGT+TGG | 0.419050 | 6_1:-98085187 | Msa0901370:CDS |
| AAGTATATATAGCATTGTTA+TGG | 0.434640 | 6_1:+98087460 | None:intergenic |
| CCATGAAAGACTGATAAAAC+TGG | 0.437778 | 6_1:-98085356 | Msa0901370:CDS |
| TTGATGCAGCCTACAAATGA+AGG | 0.455037 | 6_1:-98085430 | Msa0901370:intron |
| GCTCTCACTTCTGTTGGAGA+TGG | 0.460645 | 6_1:-98085181 | Msa0901370:CDS |
| TTATCCAAAATTGGTAGAGC+TGG | 0.462919 | 6_1:+98086255 | None:intergenic |
| ATGCAAACCTTTCCATCGTC+GGG | 0.470357 | 6_1:+98086457 | None:intergenic |
| CTACCTGTCATAAGAAAGGC+TGG | 0.478364 | 6_1:-98086309 | Msa0901370:CDS |
| CTGATAAAACTGGTCAAAGT+TGG | 0.482685 | 6_1:-98085346 | Msa0901370:CDS |
| ATAGCAACTTTACCTGAGGC+TGG | 0.500969 | 6_1:-98086580 | Msa0901370:CDS |
| ACTCCAGCCTTTCTTATGAC+AGG | 0.521115 | 6_1:+98086306 | None:intergenic |
| TCCTCACTCTGCAATATGAC+AGG | 0.523248 | 6_1:+98087174 | None:intergenic |
| ATAAAACTGGTCAAAGTTGG+TGG | 0.527329 | 6_1:-98085343 | Msa0901370:CDS |
| TGGACTACCTGTCATAAGAA+AGG | 0.529586 | 6_1:-98086313 | Msa0901370:CDS |
| ATAACTTTAGGACAAAACTT+AGG | 0.532470 | 6_1:+98085135 | None:intergenic |
| CGGGAATGTTGAGTGCAGTA+AGG | 0.537602 | 6_1:+98086476 | None:intergenic |
| CTCTGTGGTCTAGAATGCAC+TGG | 0.539673 | 6_1:+98085259 | None:intergenic |
| GTGATTAGTTGACCAGCCTC+AGG | 0.545407 | 6_1:+98086568 | None:intergenic |
| GCATTCCTCAGCTCTTTGAG+AGG | 0.548288 | 6_1:+98087004 | None:intergenic |
| TTACAGCCATAGATATTGAC+AGG | 0.548694 | 6_1:-98086350 | Msa0901370:CDS |
| TATGGGGTGGACGTGTTGCA+TGG | 0.558956 | 6_1:-98085297 | Msa0901370:CDS |
| TATGCAAACCTTTCCATCGT+CGG | 0.561122 | 6_1:+98086456 | None:intergenic |
| TGAGAGGCTCAGGCTCTCTA+GGG | 0.570036 | 6_1:+98087020 | None:intergenic |
| CAACATTCCCGACGATGGAA+AGG | 0.570116 | 6_1:-98086464 | Msa0901370:intron |
| TGTCATAAGAAAGGCTGGAG+TGG | 0.586841 | 6_1:-98086304 | Msa0901370:CDS |
| TCAATTGCTGCTAGTCTCTG+TGG | 0.590797 | 6_1:+98085244 | None:intergenic |
| TCCTGTCATATTGCAGAGTG+AGG | 0.598598 | 6_1:-98087175 | Msa0901370:CDS |
| ATGCCACTGAGAATCATCCT+TGG | 0.600903 | 6_1:-98086985 | Msa0901370:intron |
| GCACTCAACATTCCCGACGA+TGG | 0.616697 | 6_1:-98086469 | Msa0901370:CDS |
| TTTCATAGCAACTTTACCTG+AGG | 0.618675 | 6_1:-98086584 | Msa0901370:CDS |
| CTGAGCCTCTCAAAGAGCTG+AGG | 0.634468 | 6_1:-98087009 | Msa0901370:CDS |
| GCAGAGTGAGGACTTAACAA+AGG | 0.657033 | 6_1:-98087163 | Msa0901370:intron |
| TGAATCCTACATCCTCGTCG+AGG | 0.692750 | 6_1:+98085649 | None:intergenic |
| TGCTGAGATCAACCTCGACG+AGG | 0.705824 | 6_1:-98085661 | Msa0901370:CDS |
| TTACCAAGGATGATTCTCAG+TGG | 0.746004 | 6_1:+98086982 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCAAAGGAAAAAAAATA+AGG | + | chr6_1:98085252-98085271 | None:intergenic | 15.0% |
| !!! | TATTTTTTTTCCTTTGAATT+TGG | - | chr6_1:98085252-98085271 | Msa0901370:CDS | 15.0% |
| !!! | TTATATATGACAACATTTTA+TGG | - | chr6_1:98087222-98087241 | Msa0901370:intron | 15.0% |
| !!! | TATATATGACAACATTTTAT+GGG | - | chr6_1:98087223-98087242 | Msa0901370:intron | 15.0% |
| !!! | AATGAAACTTTTTTATTCAT+AGG | + | chr6_1:98087501-98087520 | None:intergenic | 15.0% |
| !!! | ATAATATCACTGCTTTTTAT+TGG | + | chr6_1:98085055-98085074 | None:intergenic | 20.0% |
| !! | AAGTATATATAGCATTGTTA+TGG | + | chr6_1:98085080-98085099 | None:intergenic | 20.0% |
| !! | AGAGTAAATTAAACATGAAT+TGG | + | chr6_1:98085220-98085239 | None:intergenic | 20.0% |
| !! | CATAGTAAGAAGAAATAAAA+GGG | + | chr6_1:98085431-98085450 | None:intergenic | 20.0% |
| !! | CTTCAAGATTATGATTTAAT+TGG | - | chr6_1:98085633-98085652 | Msa0901370:intron | 20.0% |
| !! | ACAATATCGAATTATATCTA+CGG | + | chr6_1:98086116-98086135 | None:intergenic | 20.0% |
| !!! | TTCTCTTTTTATTATCTGTT+TGG | - | chr6_1:98086331-98086350 | Msa0901370:CDS | 20.0% |
| !!! | AATTTTTTCATACATGTCAT+AGG | + | chr6_1:98086417-98086436 | None:intergenic | 20.0% |
| !! | CTTAAAATGGAAATAGATTT+AGG | + | chr6_1:98086528-98086547 | None:intergenic | 20.0% |
| !!! | TATGTTATCAACAACTTTTA+GGG | + | chr6_1:98086585-98086604 | None:intergenic | 20.0% |
| !! | GAATAAAAGATTGTAGAAAA+TGG | + | chr6_1:98086955-98086974 | None:intergenic | 20.0% |
| !!! | ATATATGACAACATTTTATG+GGG | - | chr6_1:98087224-98087243 | Msa0901370:intron | 20.0% |
| !! | ACTGATAATCAAATAACTTT+AGG | + | chr6_1:98087417-98087436 | None:intergenic | 20.0% |
| !! | ATTCTTAGCTCTCATAATTA+AGG | - | chr6_1:98085127-98085146 | Msa0901370:three_prime_UTR | 25.0% |
| ! | TAGAAAAATATGCTTAAGAG+AGG | + | chr6_1:98085168-98085187 | None:intergenic | 25.0% |
| ! | GCATAGTAAGAAGAAATAAA+AGG | + | chr6_1:98085432-98085451 | None:intergenic | 25.0% |
| ! | AATGGTATTGCAGTATATAT+TGG | - | chr6_1:98085481-98085500 | Msa0901370:intron | 25.0% |
| ! | AGAAGATAGAATAATTACCA+AGG | + | chr6_1:98085572-98085591 | None:intergenic | 25.0% |
| ! | AAAACGTTAGTATATTGTGA+TGG | - | chr6_1:98085897-98085916 | Msa0901370:intron | 25.0% |
| !!! | TTGGTTTTCATATTCATTCA+GGG | - | chr6_1:98085929-98085948 | Msa0901370:intron | 25.0% |
| ! | CTAGAAATGTGAACTTAAAA+TGG | + | chr6_1:98086541-98086560 | None:intergenic | 25.0% |
| !! | GTATGTTATCAACAACTTTT+AGG | + | chr6_1:98086586-98086605 | None:intergenic | 25.0% |
| !!! | ATACATTTCTAGTAGATCTT+CGG | - | chr6_1:98086602-98086621 | Msa0901370:intron | 25.0% |
| ! | AGTTACCAATTTAGTTAAGT+AGG | + | chr6_1:98087037-98087056 | None:intergenic | 25.0% |
| !!! | CAATGTACTGATATTTTTTG+TGG | - | chr6_1:98087077-98087096 | Msa0901370:intron | 25.0% |
| !!! | ATAACTTTAGGACAAAACTT+AGG | + | chr6_1:98087405-98087424 | None:intergenic | 25.0% |
| CTTTCAAAGTCCAAATTCAA+AGG | + | chr6_1:98085265-98085284 | None:intergenic | 30.0% | |
| GTTGATTGATTGTAGAGAAA+TGG | - | chr6_1:98085308-98085327 | Msa0901370:CDS | 30.0% | |
| ! | ACAGGATTTTTGTAGATTGA+TGG | + | chr6_1:98085348-98085367 | None:intergenic | 30.0% |
| !! | TTCTGCAATGCTTTGAAATT+CGG | - | chr6_1:98085588-98085607 | Msa0901370:intron | 30.0% |
| !! | CTTGGTTTTCATATTCATTC+AGG | - | chr6_1:98085928-98085947 | Msa0901370:intron | 30.0% |
| ! | TGGTTTTCATATTCATTCAG+GGG | - | chr6_1:98085930-98085949 | Msa0901370:intron | 30.0% |
| TCCTAAAAAGACAATTGAAG+TGG | - | chr6_1:98086013-98086032 | Msa0901370:intron | 30.0% | |
| CCTAAAAAGACAATTGAAGT+GGG | - | chr6_1:98086014-98086033 | Msa0901370:intron | 30.0% | |
| CTAAAAAGACAATTGAAGTG+GGG | - | chr6_1:98086015-98086034 | Msa0901370:intron | 30.0% | |
| TAAAAAGACAATTGAAGTGG+GGG | - | chr6_1:98086016-98086035 | Msa0901370:intron | 30.0% | |
| ! | AGTTTTCCTGTCAATATCTA+TGG | + | chr6_1:98086196-98086215 | None:intergenic | 30.0% |
| GACAGGAAAACTTATGAAAT+TGG | - | chr6_1:98086204-98086223 | Msa0901370:intron | 30.0% | |
| TCTAGCAGTTTATCCAAAAT+TGG | + | chr6_1:98086294-98086313 | None:intergenic | 30.0% | |
| TTCGGTTAAGGTAATTAGTT+AGG | - | chr6_1:98086620-98086639 | Msa0901370:intron | 30.0% | |
| ACACAATAGTAAGATTCTTG+AGG | + | chr6_1:98087004-98087023 | None:intergenic | 30.0% | |
| TTCGACCTACTTAACTAAAT+TGG | - | chr6_1:98087029-98087048 | Msa0901370:CDS | 30.0% | |
| TCAAATGTTCCTTCATTTGT+AGG | + | chr6_1:98087119-98087138 | None:intergenic | 30.0% | |
| TGATGACTCTTGATGAACAA+TGG | - | chr6_1:98085463-98085482 | Msa0901370:intron | 35.0% | |
| TATCTGTCATCCAGTTTAAC+CGG | + | chr6_1:98085674-98085693 | None:intergenic | 35.0% | |
| GTTAAACTATGGTTGAATCG+TGG | + | chr6_1:98085764-98085783 | None:intergenic | 35.0% | |
| CGATTCAACCATAGTTTAAC+AGG | - | chr6_1:98085764-98085783 | Msa0901370:intron | 35.0% | |
| CGTTAGTATATTGTGATGGT+TGG | - | chr6_1:98085901-98085920 | Msa0901370:intron | 35.0% | |
| ! | ATTGTGATGGTTGGTTAACT+TGG | - | chr6_1:98085910-98085929 | Msa0901370:intron | 35.0% |
| TTTCATAGCAACTTTACCTG+AGG | - | chr6_1:98085953-98085972 | Msa0901370:intron | 35.0% | |
| ! | CCCACTTCAATTGTCTTTTT+AGG | + | chr6_1:98086017-98086036 | None:intergenic | 35.0% |
| GATATTGTCCTCAATACTAG+AGG | - | chr6_1:98086128-98086147 | Msa0901370:intron | 35.0% | |
| AGAAACTACCTCTAGTATTG+AGG | + | chr6_1:98086139-98086158 | None:intergenic | 35.0% | |
| TTACAGCCATAGATATTGAC+AGG | - | chr6_1:98086187-98086206 | Msa0901370:intron | 35.0% | |
| TTATCCAAAATTGGTAGAGC+TGG | + | chr6_1:98086285-98086304 | None:intergenic | 35.0% | |
| CTCACATAAGTGTTTATGCT+AGG | + | chr6_1:98086379-98086398 | None:intergenic | 35.0% | |
| ATCATGATGTTTGTCCAAAC+AGG | - | chr6_1:98086501-98086520 | Msa0901370:CDS | 35.0% | |
| TCATGATGTTTGTCCAAACA+GGG | - | chr6_1:98086502-98086521 | Msa0901370:CDS | 35.0% | |
| AAATAGATTTAGGCCCTGTT+TGG | + | chr6_1:98086518-98086537 | None:intergenic | 35.0% | |
| TTCTAGTAGATCTTCGGTTA+AGG | - | chr6_1:98086608-98086627 | Msa0901370:intron | 35.0% | |
| ! | CTCGTTTTACAAGGATACAT+CGG | + | chr6_1:98086729-98086748 | None:intergenic | 35.0% |
| ! | TCTCATTCTCTCGTTTTACA+AGG | + | chr6_1:98086738-98086757 | None:intergenic | 35.0% |
| AAATAGAACGTTCAAGTGAG+CGG | - | chr6_1:98086789-98086808 | Msa0901370:intron | 35.0% | |
| ACACAAGATTTATCGAGGTT+CGG | + | chr6_1:98086922-98086941 | None:intergenic | 35.0% | |
| TGTACACACAAGATTTATCG+AGG | + | chr6_1:98086927-98086946 | None:intergenic | 35.0% | |
| !! | CCAGTTTTATCAGTCTTTCA+TGG | + | chr6_1:98087184-98087203 | None:intergenic | 35.0% |
| CCATGAAAGACTGATAAAAC+TGG | - | chr6_1:98087181-98087200 | Msa0901370:CDS | 35.0% | |
| CTGATAAAACTGGTCAAAGT+TGG | - | chr6_1:98087191-98087210 | Msa0901370:CDS | 35.0% | |
| ATAAAACTGGTCAAAGTTGG+TGG | - | chr6_1:98087194-98087213 | Msa0901370:CDS | 35.0% | |
| ! | TATGACAACATTTTATGGGG+TGG | - | chr6_1:98087227-98087246 | Msa0901370:intron | 35.0% |
| TTACCAAGGATGATTCTCAG+TGG | + | chr6_1:98085558-98085577 | None:intergenic | 40.0% | |
| TTGGTTCAATCAGTTCACTC+CGG | - | chr6_1:98085652-98085671 | Msa0901370:intron | 40.0% | |
| GGGTTGAACCTGTTAAACTA+TGG | + | chr6_1:98085775-98085794 | None:intergenic | 40.0% | |
| AGGTTCAACCCGATTCAATA+CGG | - | chr6_1:98085784-98085803 | Msa0901370:intron | 40.0% | |
| TGGTTGAACCGTATTGAATC+GGG | + | chr6_1:98085795-98085814 | None:intergenic | 40.0% | |
| CTGGTTGAACCGTATTGAAT+CGG | + | chr6_1:98085796-98085815 | None:intergenic | 40.0% | |
| TTCTCTGTTGTATTGCAGTC+TGG | + | chr6_1:98085815-98085834 | None:intergenic | 40.0% | |
| TATGCAAACCTTTCCATCGT+CGG | + | chr6_1:98086084-98086103 | None:intergenic | 40.0% | |
| TGGACTACCTGTCATAAGAA+AGG | - | chr6_1:98086224-98086243 | Msa0901370:intron | 40.0% | |
| !! | CATTTCTAGTAGCGAATCAC+TGG | - | chr6_1:98086552-98086571 | Msa0901370:CDS | 40.0% |
| !! | AGCGTTTTGGACAAGTTAGT+CGG | - | chr6_1:98086650-98086669 | Msa0901370:intron | 40.0% |
| AATAGAACGTTCAAGTGAGC+GGG | - | chr6_1:98086790-98086809 | Msa0901370:intron | 40.0% | |
| TTGATGCAGCCTACAAATGA+AGG | - | chr6_1:98087107-98087126 | Msa0901370:intron | 40.0% | |
| ! | GAATTTGCTCTCACTTCTGT+TGG | - | chr6_1:98087350-98087369 | Msa0901370:intron | 40.0% |
| TCCTGTCATATTGCAGAGTG+AGG | - | chr6_1:98085362-98085381 | Msa0901370:CDS | 45.0% | |
| TCCTCACTCTGCAATATGAC+AGG | + | chr6_1:98085366-98085385 | None:intergenic | 45.0% | |
| GCAGAGTGAGGACTTAACAA+AGG | - | chr6_1:98085374-98085393 | Msa0901370:CDS | 45.0% | |
| ATGCCACTGAGAATCATCCT+TGG | - | chr6_1:98085552-98085571 | Msa0901370:intron | 45.0% | |
| TCAGTTCACTCCGGTTAAAC+TGG | - | chr6_1:98085661-98085680 | Msa0901370:CDS | 45.0% | |
| GAACAAACCAACTGACGAGT+TGG | - | chr6_1:98085832-98085851 | Msa0901370:intron | 45.0% | |
| !! | AAACCAACTGACGAGTTGGT+CGG | - | chr6_1:98085836-98085855 | Msa0901370:intron | 45.0% |
| ATAGCAACTTTACCTGAGGC+TGG | - | chr6_1:98085957-98085976 | Msa0901370:intron | 45.0% | |
| !! | ATTGAAGTGGGGGTGTTTAC+TGG | - | chr6_1:98086026-98086045 | Msa0901370:intron | 45.0% |
| ATGCAAACCTTTCCATCGTC+GGG | + | chr6_1:98086083-98086102 | None:intergenic | 45.0% | |
| CTACCTGTCATAAGAAAGGC+TGG | - | chr6_1:98086228-98086247 | Msa0901370:intron | 45.0% | |
| ACTCCAGCCTTTCTTATGAC+AGG | + | chr6_1:98086234-98086253 | None:intergenic | 45.0% | |
| TGTCATAAGAAAGGCTGGAG+TGG | - | chr6_1:98086233-98086252 | Msa0901370:intron | 45.0% | |
| ! | GTCTCCAGCTCTACCAATTT+TGG | - | chr6_1:98086278-98086297 | Msa0901370:CDS | 45.0% |
| ACTTGTCCAAAACGCTGAAC+AGG | + | chr6_1:98086646-98086665 | None:intergenic | 45.0% | |
| ! | GGACAAGTTAGTCGGTGTTT+CGG | - | chr6_1:98086658-98086677 | Msa0901370:intron | 45.0% |
| TGCACTGGAACATTCTCTTC+AGG | + | chr6_1:98087266-98087285 | None:intergenic | 45.0% | |
| ! | TCAATTGCTGCTAGTCTCTG+TGG | + | chr6_1:98087296-98087315 | None:intergenic | 45.0% |
| GCATTCCTCAGCTCTTTGAG+AGG | + | chr6_1:98085536-98085555 | None:intergenic | 50.0% | |
| ! | TGGTCGGTTCTCTGTTCAAC+TGG | - | chr6_1:98085852-98085871 | Msa0901370:intron | 50.0% |
| ! | GTGATTAGTTGACCAGCCTC+AGG | + | chr6_1:98085972-98085991 | None:intergenic | 50.0% |
| CGGGAATGTTGAGTGCAGTA+AGG | + | chr6_1:98086064-98086083 | None:intergenic | 50.0% | |
| CAACATTCCCGACGATGGAA+AGG | - | chr6_1:98086073-98086092 | Msa0901370:intron | 50.0% | |
| ! | GTTAGGCCTGTTCAGCGTTT+TGG | - | chr6_1:98086637-98086656 | Msa0901370:intron | 50.0% |
| ATCAACCTCGACGAGGATGT+AGG | - | chr6_1:98086883-98086902 | Msa0901370:intron | 50.0% | |
| TGAATCCTACATCCTCGTCG+AGG | + | chr6_1:98086891-98086910 | None:intergenic | 50.0% | |
| ! | CTCTGTGGTCTAGAATGCAC+TGG | + | chr6_1:98087281-98087300 | None:intergenic | 50.0% |
| GCTCTCACTTCTGTTGGAGA+TGG | - | chr6_1:98087356-98087375 | Msa0901370:intron | 50.0% | |
| TGAGAGGCTCAGGCTCTCTA+GGG | + | chr6_1:98085520-98085539 | None:intergenic | 55.0% | |
| TTGAGAGGCTCAGGCTCTCT+AGG | + | chr6_1:98085521-98085540 | None:intergenic | 55.0% | |
| ! | CTCAGCTCTTTGAGAGGCTC+AGG | + | chr6_1:98085530-98085549 | None:intergenic | 55.0% |
| CTGAGCCTCTCAAAGAGCTG+AGG | - | chr6_1:98085528-98085547 | Msa0901370:intron | 55.0% | |
| GAACCGACCAACTCGTCAGT+TGG | + | chr6_1:98085842-98085861 | None:intergenic | 55.0% | |
| GCACTCAACATTCCCGACGA+TGG | - | chr6_1:98086068-98086087 | Msa0901370:intron | 55.0% | |
| TGCTGAGATCAACCTCGACG+AGG | - | chr6_1:98086876-98086895 | Msa0901370:intron | 55.0% | |
| TATGGGGTGGACGTGTTGCA+TGG | - | chr6_1:98087240-98087259 | Msa0901370:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 98085022 | 98087537 | 98085022 | ID=Msa0901370;Name=Msa0901370 |
| chr6_1 | mRNA | 98085022 | 98087537 | 98085022 | ID=Msa0901370-mRNA-1;Parent=Msa0901370;Name=Msa0901370-mRNA-1;_AED=0.10;_eAED=0.10;_QI=131|0.66|0.85|0.85|0.83|0.85|7|131|260 |
| chr6_1 | exon | 98085022 | 98085443 | 98085022 | ID=Msa0901370-mRNA-1:exon:17253;Parent=Msa0901370-mRNA-1 |
| chr6_1 | exon | 98085659 | 98085724 | 98085659 | ID=Msa0901370-mRNA-1:exon:17252;Parent=Msa0901370-mRNA-1 |
| chr6_1 | exon | 98086242 | 98086373 | 98086242 | ID=Msa0901370-mRNA-1:exon:17251;Parent=Msa0901370-mRNA-1 |
| chr6_1 | exon | 98086465 | 98086609 | 98086465 | ID=Msa0901370-mRNA-1:exon:17250;Parent=Msa0901370-mRNA-1 |
| chr6_1 | exon | 98086986 | 98087065 | 98086986 | ID=Msa0901370-mRNA-1:exon:17249;Parent=Msa0901370-mRNA-1 |
| chr6_1 | exon | 98087164 | 98087236 | 98087164 | ID=Msa0901370-mRNA-1:exon:17248;Parent=Msa0901370-mRNA-1 |
| chr6_1 | exon | 98087411 | 98087537 | 98087411 | ID=Msa0901370-mRNA-1:exon:17247;Parent=Msa0901370-mRNA-1 |
| chr6_1 | five_prime_UTR | 98087411 | 98087537 | 98087411 | ID=Msa0901370-mRNA-1:five_prime_utr;Parent=Msa0901370-mRNA-1 |
| chr6_1 | five_prime_UTR | 98087233 | 98087236 | 98087233 | ID=Msa0901370-mRNA-1:five_prime_utr;Parent=Msa0901370-mRNA-1 |
| chr6_1 | CDS | 98087164 | 98087232 | 98087164 | ID=Msa0901370-mRNA-1:cds;Parent=Msa0901370-mRNA-1 |
| chr6_1 | CDS | 98086986 | 98087065 | 98086986 | ID=Msa0901370-mRNA-1:cds;Parent=Msa0901370-mRNA-1 |
| chr6_1 | CDS | 98086465 | 98086609 | 98086465 | ID=Msa0901370-mRNA-1:cds;Parent=Msa0901370-mRNA-1 |
| chr6_1 | CDS | 98086242 | 98086373 | 98086242 | ID=Msa0901370-mRNA-1:cds;Parent=Msa0901370-mRNA-1 |
| chr6_1 | CDS | 98085659 | 98085724 | 98085659 | ID=Msa0901370-mRNA-1:cds;Parent=Msa0901370-mRNA-1 |
| chr6_1 | CDS | 98085153 | 98085443 | 98085153 | ID=Msa0901370-mRNA-1:cds;Parent=Msa0901370-mRNA-1 |
| chr6_1 | three_prime_UTR | 98085022 | 98085152 | 98085022 | ID=Msa0901370-mRNA-1:three_prime_utr;Parent=Msa0901370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
