Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966050 | sp|Q9C5D7|CAMT3_ARATH | 53.488 | 172 | 58 | 1 | 21 | 170 | 60 | 231 | 2.66e-60 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966050 | G7KJ71 | 70.588 | 238 | 3 | 2 | 1 | 171 | 1 | 238 | 3.13e-105 | 310 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0600890 | Msa0966050 | 0.800491 | 1.406005e-48 | -8.615850e-47 |
| Msa0901370 | Msa0966050 | 0.800318 | 1.524338e-48 | -8.615850e-47 |
| Msa0925840 | Msa0966050 | 0.941274 | 5.531797e-101 | -8.615850e-47 |
| Msa0966050 | Msa1001290 | 0.857561 | 1.501258e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966050 | MtrunA17_Chr6g0487981 | 70.588 | 238 | 3 | 2 | 1 | 171 | 1 | 238 | 6.02e-109 | 310 |
| Msa0966050 | MtrunA17_Chr8g0344401 | 60.465 | 172 | 45 | 2 | 21 | 169 | 62 | 233 | 1.77e-67 | 205 |
| Msa0966050 | MtrunA17_Chr8g0389361 | 59.146 | 164 | 45 | 1 | 30 | 171 | 77 | 240 | 4.94e-62 | 191 |
| Msa0966050 | MtrunA17_Chr4g0053021 | 50.000 | 174 | 62 | 3 | 21 | 170 | 73 | 245 | 5.98e-54 | 171 |
| Msa0966050 | MtrunA17_Chr4g0053031 | 50.857 | 175 | 61 | 3 | 21 | 171 | 75 | 248 | 1.10e-53 | 170 |
| Msa0966050 | MtrunA17_Chr4g0053241 | 50.575 | 174 | 61 | 3 | 21 | 170 | 75 | 247 | 4.83e-53 | 169 |
| Msa0966050 | MtrunA17_Chr4g0053331 | 49.425 | 174 | 63 | 4 | 21 | 170 | 70 | 242 | 7.52e-53 | 168 |
| Msa0966050 | MtrunA17_Chr4g0044581 | 50.289 | 173 | 63 | 2 | 21 | 170 | 74 | 246 | 1.38e-52 | 167 |
| Msa0966050 | MtrunA17_Chr4g0051041 | 48.235 | 170 | 66 | 2 | 21 | 168 | 58 | 227 | 9.96e-51 | 162 |
| Msa0966050 | MtrunA17_Chr2g0312921 | 34.706 | 170 | 85 | 2 | 21 | 169 | 133 | 297 | 9.37e-33 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966050 | AT4G26220.1 | 53.488 | 172 | 58 | 1 | 21 | 170 | 60 | 231 | 2.71e-61 | 189 |
| Msa0966050 | AT1G67980.1 | 53.254 | 169 | 60 | 1 | 21 | 170 | 63 | 231 | 6.36e-59 | 184 |
| Msa0966050 | AT1G24735.3 | 50.877 | 171 | 63 | 1 | 21 | 170 | 24 | 194 | 1.63e-56 | 176 |
| Msa0966050 | AT1G24735.1 | 50.877 | 171 | 63 | 1 | 21 | 170 | 69 | 239 | 6.12e-56 | 176 |
| Msa0966050 | AT1G24735.2 | 50.877 | 171 | 63 | 1 | 21 | 170 | 120 | 290 | 1.99e-55 | 176 |
| Msa0966050 | AT4G34050.1 | 48.276 | 174 | 67 | 2 | 21 | 171 | 86 | 259 | 6.03e-52 | 167 |
| Msa0966050 | AT4G34050.3 | 48.276 | 174 | 67 | 2 | 21 | 171 | 113 | 286 | 8.33e-52 | 167 |
| Msa0966050 | AT1G67990.1 | 48.235 | 170 | 68 | 1 | 21 | 170 | 63 | 232 | 9.78e-51 | 163 |
| Msa0966050 | AT1G67980.2 | 45.062 | 162 | 70 | 1 | 28 | 170 | 2 | 163 | 3.67e-42 | 139 |
| Msa0966050 | AT3G61990.1 | 37.647 | 170 | 80 | 2 | 21 | 169 | 125 | 289 | 7.04e-34 | 121 |
| Msa0966050 | AT3G62000.1 | 35.882 | 170 | 83 | 2 | 21 | 169 | 113 | 277 | 1.81e-33 | 120 |
| Msa0966050 | AT4G34050.2 | 49.074 | 108 | 52 | 2 | 67 | 171 | 41 | 148 | 1.01e-29 | 106 |
| Msa0966050 | AT3G62000.2 | 35.000 | 160 | 78 | 2 | 21 | 159 | 113 | 267 | 8.28e-27 | 103 |
Find 29 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAGGAAAACTTATGAAAT+TGG | 0.203207 | 6_3:+93986343 | Msa0966050:CDS |
| ATTCTTAGCTCTCATAATTA+AGG | 0.258836 | 6_3:+93985272 | Msa0966050:five_prime_UTR |
| TCAAATGTTCCTTCATTTGT+AGG | 0.273170 | 6_3:-93987221 | None:intergenic |
| ACTGATAATGAAATAACTTT+AGG | 0.307962 | 6_3:-93987520 | None:intergenic |
| CAAAATGAAACTTTATTCAT+AGG | 0.361846 | 6_3:-93987604 | None:intergenic |
| TGCACTGGAACATTCTCTTC+AGG | 0.394174 | 6_3:-93987368 | None:intergenic |
| GTTGATTGATTGTAGAGAAA+TGG | 0.395099 | 6_3:+93985451 | Msa0966050:intron |
| AAGTATATATAGCATTGTTA+TGG | 0.434640 | 6_3:-93985222 | None:intergenic |
| CCATGAAAGACTGATAAAAC+TGG | 0.437778 | 6_3:+93987286 | Msa0966050:CDS |
| GAATTTGCTCTCACTTCTGT+TGG | 0.447217 | 6_3:+93987455 | Msa0966050:CDS |
| GCTCTCACTTCTGTTGGTGA+TGG | 0.468535 | 6_3:+93987461 | Msa0966050:CDS |
| ATGCAAACCTTTCCATCGTC+GGG | 0.470357 | 6_3:-93986219 | None:intergenic |
| CTACCTGTCATAAGAAAGGC+TGG | 0.478364 | 6_3:+93986367 | Msa0966050:CDS |
| CTGATAAAACTGGTCAAAGT+TGG | 0.482685 | 6_3:+93987296 | Msa0966050:CDS |
| ACTCCAGCCTTTCTTATGAC+AGG | 0.521115 | 6_3:-93986370 | None:intergenic |
| TCCTCACTCTGCAATATGAC+AGG | 0.523248 | 6_3:-93985506 | None:intergenic |
| ATGACGCAGCCTACAAATGA+AGG | 0.525464 | 6_3:+93987212 | Msa0966050:intron |
| ATAAAACTGGTCAAAGTTGG+TGG | 0.527329 | 6_3:+93987299 | Msa0966050:CDS |
| TGGACTACCTGTCATAAGAA+AGG | 0.529586 | 6_3:+93986363 | Msa0966050:CDS |
| CGGGAATGTTGAGTGCAGTA+AGG | 0.537602 | 6_3:-93986200 | None:intergenic |
| CTCTGTGGTCTAGAATGCAC+TGG | 0.539673 | 6_3:-93987383 | None:intergenic |
| TTACAGCCATAGATATTGAC+AGG | 0.548694 | 6_3:+93986326 | Msa0966050:CDS |
| TATGGGGTGGACGTGTTGCA+TGG | 0.558956 | 6_3:+93987345 | Msa0966050:CDS |
| TATGCAAACCTTTCCATCGT+CGG | 0.561122 | 6_3:-93986220 | None:intergenic |
| CAACATTCCCGACGATGGAA+AGG | 0.570116 | 6_3:+93986212 | Msa0966050:CDS |
| TCAATTGCTGCTAGTCTCTG+TGG | 0.590797 | 6_3:-93987398 | None:intergenic |
| TCCTGTCATATTGCAGAGTG+AGG | 0.598598 | 6_3:+93985505 | Msa0966050:CDS |
| GCACTCAACATTCCCGACGA+TGG | 0.616697 | 6_3:+93986207 | Msa0966050:CDS |
| GCAGAGTGAGGACTTAACAA+AGG | 0.657033 | 6_3:+93985517 | Msa0966050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAGTAAATTAAATATGAAT+TGG | - | chr6_3:93985365-93985384 | None:intergenic | 15.0% |
| !!! | TTTAATTTCGTAAACTAAAT+TGG | + | chr6_3:93987146-93987165 | Msa0966050:intron | 15.0% |
| !!! | TTATATATGACAACATTTTA+TGG | + | chr6_3:93987327-93987346 | Msa0966050:CDS | 15.0% |
| !!! | TATATATGACAACATTTTAT+GGG | + | chr6_3:93987328-93987347 | Msa0966050:CDS | 15.0% |
| !!! | ATAATATCACTGCTTTTTAT+TGG | - | chr6_3:93985200-93985219 | None:intergenic | 20.0% |
| !! | AAGTATATATAGCATTGTTA+TGG | - | chr6_3:93985225-93985244 | None:intergenic | 20.0% |
| !! | CATAGTAAGAAGAAATAAAA+GGG | - | chr6_3:93985574-93985593 | None:intergenic | 20.0% |
| !! | CTTCAAGATTATGATTTAAT+TGG | + | chr6_3:93985776-93985795 | Msa0966050:intron | 20.0% |
| !! | ACAATATCGAATTATATCTA+CGG | - | chr6_3:93986255-93986274 | None:intergenic | 20.0% |
| !!! | TTCTCTTTTTATTATCTGTT+TGG | + | chr6_3:93986470-93986489 | Msa0966050:intron | 20.0% |
| !!! | AATTTTTTCATACATGTCAT+AGG | - | chr6_3:93986556-93986575 | None:intergenic | 20.0% |
| !! | CTTAAAATGGAAATAGATTT+AGG | - | chr6_3:93986667-93986686 | None:intergenic | 20.0% |
| !!! | TATGTTATCAACAACTTTTA+GGG | - | chr6_3:93986724-93986743 | None:intergenic | 20.0% |
| !!! | AATGATTTTTAATGTTACGT+AGG | - | chr6_3:93987117-93987136 | None:intergenic | 20.0% |
| !!! | ATTTTTTGACAATTTTTGTG+TGG | + | chr6_3:93987183-93987202 | Msa0966050:intron | 20.0% |
| !!! | ATATATGACAACATTTTATG+GGG | + | chr6_3:93987329-93987348 | Msa0966050:CDS | 20.0% |
| !!! | ACTGATAATGAAATAACTTT+AGG | - | chr6_3:93987523-93987542 | None:intergenic | 20.0% |
| !! | CAAAATGAAACTTTATTCAT+AGG | - | chr6_3:93987607-93987626 | None:intergenic | 20.0% |
| !! | ATTCTTAGCTCTCATAATTA+AGG | + | chr6_3:93985272-93985291 | Msa0966050:five_prime_UTR | 25.0% |
| ! | TAGAAAAATATGCTTAAGAG+AGG | - | chr6_3:93985313-93985332 | None:intergenic | 25.0% |
| !!! | CTTTTCCTTACTTTTTTCTT+TGG | + | chr6_3:93985389-93985408 | Msa0966050:intron | 25.0% |
| ! | CAAAACCAAAGAAAAAAGTA+AGG | - | chr6_3:93985397-93985416 | None:intergenic | 25.0% |
| !!! | CTTACTTTTTTCTTTGGTTT+TGG | + | chr6_3:93985395-93985414 | Msa0966050:intron | 25.0% |
| ! | GCATAGTAAGAAGAAATAAA+AGG | - | chr6_3:93985575-93985594 | None:intergenic | 25.0% |
| ! | AATGGTATTGCAGTATATAT+TGG | + | chr6_3:93985624-93985643 | Msa0966050:intron | 25.0% |
| ! | AGAAGATAGAATAATTACCA+AGG | - | chr6_3:93985715-93985734 | None:intergenic | 25.0% |
| !!! | CGTTTTAAAATTGAACAGAT+CGG | - | chr6_3:93986026-93986045 | None:intergenic | 25.0% |
| ! | AAAACGTTAGTATATTGTGA+TGG | + | chr6_3:93986040-93986059 | Msa0966050:intron | 25.0% |
| !!! | TTGGTTTTCATATTCATTCA+GGG | + | chr6_3:93986068-93986087 | Msa0966050:intron | 25.0% |
| ! | CTAGAAATGTGAACTTAAAA+TGG | - | chr6_3:93986680-93986699 | None:intergenic | 25.0% |
| !! | GTATGTTATCAACAACTTTT+AGG | - | chr6_3:93986725-93986744 | None:intergenic | 25.0% |
| !!! | ATACATTTCTAGTAGATCTT+CGG | + | chr6_3:93986741-93986760 | Msa0966050:intron | 25.0% |
| GTTGATTGATTGTAGAGAAA+TGG | + | chr6_3:93985451-93985470 | Msa0966050:intron | 30.0% | |
| ! | ACAGGATTTTTGTAGATTGA+TGG | - | chr6_3:93985491-93985510 | None:intergenic | 30.0% |
| !! | TTCTGCAATGCTTTGAAATT+CGG | + | chr6_3:93985731-93985750 | Msa0966050:intron | 30.0% |
| GTATATTGTGATGGTTAACT+TGG | + | chr6_3:93986049-93986068 | Msa0966050:intron | 30.0% | |
| !! | CTTGGTTTTCATATTCATTC+AGG | + | chr6_3:93986067-93986086 | Msa0966050:intron | 30.0% |
| ! | TGGTTTTCATATTCATTCAG+GGG | + | chr6_3:93986069-93986088 | Msa0966050:intron | 30.0% |
| ! | AGTTTTCCTGTCAATATCTA+TGG | - | chr6_3:93986335-93986354 | None:intergenic | 30.0% |
| GACAGGAAAACTTATGAAAT+TGG | + | chr6_3:93986343-93986362 | Msa0966050:CDS | 30.0% | |
| TCTAGCAGTTTATCCAAAAT+TGG | - | chr6_3:93986433-93986452 | None:intergenic | 30.0% | |
| TTCGGTTAAGGTAATTAGTT+AGG | + | chr6_3:93986759-93986778 | Msa0966050:intron | 30.0% | |
| ! | AATGTTACGTAGGTTGAAAT+TGG | - | chr6_3:93987107-93987126 | None:intergenic | 30.0% |
| TCAAATGTTCCTTCATTTGT+AGG | - | chr6_3:93987224-93987243 | None:intergenic | 30.0% | |
| TGATGACTCTTGATGAACAA+TGG | + | chr6_3:93985606-93985625 | Msa0966050:intron | 35.0% | |
| TATCTGTCATCCAGTTTAAC+CGG | - | chr6_3:93985817-93985836 | None:intergenic | 35.0% | |
| GTTAAACTATGGTTGAATCG+TGG | - | chr6_3:93985907-93985926 | None:intergenic | 35.0% | |
| CGATTCAACCATAGTTTAAC+AGG | + | chr6_3:93985907-93985926 | Msa0966050:intron | 35.0% | |
| TTTCATAGCAACTTTACCTG+AGG | + | chr6_3:93986092-93986111 | Msa0966050:intron | 35.0% | |
| TCCCAAAAAGACAATTGAAG+TGG | + | chr6_3:93986152-93986171 | Msa0966050:CDS | 35.0% | |
| ! | CCCACTTCAATTGTCTTTTT+GGG | - | chr6_3:93986156-93986175 | None:intergenic | 35.0% |
| CCCAAAAAGACAATTGAAGT+GGG | + | chr6_3:93986153-93986172 | Msa0966050:CDS | 35.0% | |
| CCAAAAAGACAATTGAAGTG+GGG | + | chr6_3:93986154-93986173 | Msa0966050:CDS | 35.0% | |
| CAAAAAGACAATTGAAGTGG+GGG | + | chr6_3:93986155-93986174 | Msa0966050:CDS | 35.0% | |
| GATATTGTCCTCAATACTAG+AGG | + | chr6_3:93986267-93986286 | Msa0966050:intron | 35.0% | |
| AGAAACTACCTCTAGTATTG+AGG | - | chr6_3:93986278-93986297 | None:intergenic | 35.0% | |
| TTACAGCCATAGATATTGAC+AGG | + | chr6_3:93986326-93986345 | Msa0966050:CDS | 35.0% | |
| TTATCCAAAATTGGTAGAGC+TGG | - | chr6_3:93986424-93986443 | None:intergenic | 35.0% | |
| CTCACATAAGTGTTTATGCT+AGG | - | chr6_3:93986518-93986537 | None:intergenic | 35.0% | |
| ATCATGATGTTTGTCCAAAC+AGG | + | chr6_3:93986640-93986659 | Msa0966050:intron | 35.0% | |
| TCATGATGTTTGTCCAAACA+GGG | + | chr6_3:93986641-93986660 | Msa0966050:intron | 35.0% | |
| AAATAGATTTAGGCCCTGTT+TGG | - | chr6_3:93986657-93986676 | None:intergenic | 35.0% | |
| TTCTAGTAGATCTTCGGTTA+AGG | + | chr6_3:93986747-93986766 | Msa0966050:intron | 35.0% | |
| ! | TCTCATTCTCTCGTTTTACA+AGG | - | chr6_3:93986877-93986896 | None:intergenic | 35.0% |
| AAATAGAACGTTCAAGTGAG+CGG | + | chr6_3:93986928-93986947 | Msa0966050:intron | 35.0% | |
| ACACAAGATTTATCGAGGTT+CGG | - | chr6_3:93987061-93987080 | None:intergenic | 35.0% | |
| TGTACACACAAGATTTATCG+AGG | - | chr6_3:93987066-93987085 | None:intergenic | 35.0% | |
| !! | CCAGTTTTATCAGTCTTTCA+TGG | - | chr6_3:93987289-93987308 | None:intergenic | 35.0% |
| CCATGAAAGACTGATAAAAC+TGG | + | chr6_3:93987286-93987305 | Msa0966050:CDS | 35.0% | |
| CTGATAAAACTGGTCAAAGT+TGG | + | chr6_3:93987296-93987315 | Msa0966050:CDS | 35.0% | |
| ATAAAACTGGTCAAAGTTGG+TGG | + | chr6_3:93987299-93987318 | Msa0966050:CDS | 35.0% | |
| ! | TATGACAACATTTTATGGGG+TGG | + | chr6_3:93987332-93987351 | Msa0966050:CDS | 35.0% |
| TTACCAAGGATGATTCTCAG+TGG | - | chr6_3:93985701-93985720 | None:intergenic | 40.0% | |
| TTGGTTCAATCAGTTCACTC+CGG | + | chr6_3:93985795-93985814 | Msa0966050:intron | 40.0% | |
| GGGTTGAACCTGTTAAACTA+TGG | - | chr6_3:93985918-93985937 | None:intergenic | 40.0% | |
| AGGTTCAACCCGATTCAATA+CGG | + | chr6_3:93985927-93985946 | Msa0966050:intron | 40.0% | |
| TGGTTGAACCGTATTGAATC+GGG | - | chr6_3:93985938-93985957 | None:intergenic | 40.0% | |
| CTGGTTGAACCGTATTGAAT+CGG | - | chr6_3:93985939-93985958 | None:intergenic | 40.0% | |
| TTCTCTGTTGTATTGCAGTC+TGG | - | chr6_3:93985958-93985977 | None:intergenic | 40.0% | |
| ! | CCCCACTTCAATTGTCTTTT+TGG | - | chr6_3:93986157-93986176 | None:intergenic | 40.0% |
| TATGCAAACCTTTCCATCGT+CGG | - | chr6_3:93986223-93986242 | None:intergenic | 40.0% | |
| TGGACTACCTGTCATAAGAA+AGG | + | chr6_3:93986363-93986382 | Msa0966050:CDS | 40.0% | |
| !! | CATTTCTAGTAGCGAATCAC+TGG | + | chr6_3:93986691-93986710 | Msa0966050:intron | 40.0% |
| !! | AGCGTTTTGGACAAGTTAGT+CGG | + | chr6_3:93986789-93986808 | Msa0966050:intron | 40.0% |
| AATAGAACGTTCAAGTGAGC+GGG | + | chr6_3:93986929-93986948 | Msa0966050:intron | 40.0% | |
| ! | GAATTTGCTCTCACTTCTGT+TGG | + | chr6_3:93987455-93987474 | Msa0966050:CDS | 40.0% |
| TCCTGTCATATTGCAGAGTG+AGG | + | chr6_3:93985505-93985524 | Msa0966050:CDS | 45.0% | |
| TCCTCACTCTGCAATATGAC+AGG | - | chr6_3:93985509-93985528 | None:intergenic | 45.0% | |
| GCAGAGTGAGGACTTAACAA+AGG | + | chr6_3:93985517-93985536 | Msa0966050:CDS | 45.0% | |
| ATGCCACTGAGAATCATCCT+TGG | + | chr6_3:93985695-93985714 | Msa0966050:intron | 45.0% | |
| TCAGTTCACTCCGGTTAAAC+TGG | + | chr6_3:93985804-93985823 | Msa0966050:intron | 45.0% | |
| GAACAAACCAACTGACGAGT+TGG | + | chr6_3:93985975-93985994 | Msa0966050:intron | 45.0% | |
| !! | AAACCAACTGACGAGTTGGT+CGG | + | chr6_3:93985979-93985998 | Msa0966050:intron | 45.0% |
| ATAGCAACTTTACCTGAGGC+TGG | + | chr6_3:93986096-93986115 | Msa0966050:intron | 45.0% | |
| !! | ATTGAAGTGGGGGTGTTTAC+TGG | + | chr6_3:93986165-93986184 | Msa0966050:CDS | 45.0% |
| ATGCAAACCTTTCCATCGTC+GGG | - | chr6_3:93986222-93986241 | None:intergenic | 45.0% | |
| CTACCTGTCATAAGAAAGGC+TGG | + | chr6_3:93986367-93986386 | Msa0966050:CDS | 45.0% | |
| ACTCCAGCCTTTCTTATGAC+AGG | - | chr6_3:93986373-93986392 | None:intergenic | 45.0% | |
| TGTCATAAGAAAGGCTGGAG+TGG | + | chr6_3:93986372-93986391 | Msa0966050:intron | 45.0% | |
| ! | GTCTCCAGCTCTACCAATTT+TGG | + | chr6_3:93986417-93986436 | Msa0966050:intron | 45.0% |
| ACTTGTCCAAAACGCTGAAC+AGG | - | chr6_3:93986785-93986804 | None:intergenic | 45.0% | |
| ! | GGACAAGTTAGTCGGTGTTT+CGG | + | chr6_3:93986797-93986816 | Msa0966050:intron | 45.0% |
| ATGACGCAGCCTACAAATGA+AGG | + | chr6_3:93987212-93987231 | Msa0966050:intron | 45.0% | |
| TGCACTGGAACATTCTCTTC+AGG | - | chr6_3:93987371-93987390 | None:intergenic | 45.0% | |
| ! | TCAATTGCTGCTAGTCTCTG+TGG | - | chr6_3:93987401-93987420 | None:intergenic | 45.0% |
| GCATTCCTCAGCTCTTTGAG+AGG | - | chr6_3:93985679-93985698 | None:intergenic | 50.0% | |
| ! | TGGTCGGTTCTCTGTTCAAC+TGG | + | chr6_3:93985995-93986014 | Msa0966050:intron | 50.0% |
| ! | GTGATTAGTTGACCAGCCTC+AGG | - | chr6_3:93986111-93986130 | None:intergenic | 50.0% |
| CGGGAATGTTGAGTGCAGTA+AGG | - | chr6_3:93986203-93986222 | None:intergenic | 50.0% | |
| CAACATTCCCGACGATGGAA+AGG | + | chr6_3:93986212-93986231 | Msa0966050:CDS | 50.0% | |
| ! | GTTAGGCCTGTTCAGCGTTT+TGG | + | chr6_3:93986776-93986795 | Msa0966050:intron | 50.0% |
| ATCAACCTCGACGAGGATGT+AGG | + | chr6_3:93987022-93987041 | Msa0966050:intron | 50.0% | |
| TGAATCCTACATCCTCGTCG+AGG | - | chr6_3:93987030-93987049 | None:intergenic | 50.0% | |
| ! | CTCTGTGGTCTAGAATGCAC+TGG | - | chr6_3:93987386-93987405 | None:intergenic | 50.0% |
| ! | GCTCTCACTTCTGTTGGTGA+TGG | + | chr6_3:93987461-93987480 | Msa0966050:CDS | 50.0% |
| TGAGAGGCTCAGGCTCTCTA+GGG | - | chr6_3:93985663-93985682 | None:intergenic | 55.0% | |
| TTGAGAGGCTCAGGCTCTCT+AGG | - | chr6_3:93985664-93985683 | None:intergenic | 55.0% | |
| ! | CTCAGCTCTTTGAGAGGCTC+AGG | - | chr6_3:93985673-93985692 | None:intergenic | 55.0% |
| CTGAGCCTCTCAAAGAGCTG+AGG | + | chr6_3:93985671-93985690 | Msa0966050:intron | 55.0% | |
| GAACCGACCAACTCGTCAGT+TGG | - | chr6_3:93985985-93986004 | None:intergenic | 55.0% | |
| GCACTCAACATTCCCGACGA+TGG | + | chr6_3:93986207-93986226 | Msa0966050:CDS | 55.0% | |
| TGCTGAGATCAACCTCGACG+AGG | + | chr6_3:93987015-93987034 | Msa0966050:intron | 55.0% | |
| TATGGGGTGGACGTGTTGCA+TGG | + | chr6_3:93987345-93987364 | Msa0966050:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 93985167 | 93987640 | 93985167 | ID=Msa0966050;Name=Msa0966050 |
| chr6_3 | mRNA | 93985167 | 93987640 | 93985167 | ID=Msa0966050-mRNA-1;Parent=Msa0966050;Name=Msa0966050-mRNA-1;_AED=0.14;_eAED=0.14;_QI=131|0.5|0.6|1|0.75|0.8|5|129|171 |
| chr6_3 | exon | 93985167 | 93985293 | 93985167 | ID=Msa0966050-mRNA-1:exon:17255;Parent=Msa0966050-mRNA-1 |
| chr6_3 | exon | 93985466 | 93985538 | 93985466 | ID=Msa0966050-mRNA-1:exon:17256;Parent=Msa0966050-mRNA-1 |
| chr6_3 | exon | 93986144 | 93986233 | 93986144 | ID=Msa0966050-mRNA-1:exon:17257;Parent=Msa0966050-mRNA-1 |
| chr6_3 | exon | 93986325 | 93986390 | 93986325 | ID=Msa0966050-mRNA-1:exon:17258;Parent=Msa0966050-mRNA-1 |
| chr6_3 | exon | 93987221 | 93987640 | 93987221 | ID=Msa0966050-mRNA-1:exon:17259;Parent=Msa0966050-mRNA-1 |
| chr6_3 | five_prime_UTR | 93985167 | 93985293 | 93985167 | ID=Msa0966050-mRNA-1:five_prime_utr;Parent=Msa0966050-mRNA-1 |
| chr6_3 | five_prime_UTR | 93985466 | 93985469 | 93985466 | ID=Msa0966050-mRNA-1:five_prime_utr;Parent=Msa0966050-mRNA-1 |
| chr6_3 | CDS | 93985470 | 93985538 | 93985470 | ID=Msa0966050-mRNA-1:cds;Parent=Msa0966050-mRNA-1 |
| chr6_3 | CDS | 93986144 | 93986233 | 93986144 | ID=Msa0966050-mRNA-1:cds;Parent=Msa0966050-mRNA-1 |
| chr6_3 | CDS | 93986325 | 93986390 | 93986325 | ID=Msa0966050-mRNA-1:cds;Parent=Msa0966050-mRNA-1 |
| chr6_3 | CDS | 93987221 | 93987511 | 93987221 | ID=Msa0966050-mRNA-1:cds;Parent=Msa0966050-mRNA-1 |
| chr6_3 | three_prime_UTR | 93987512 | 93987640 | 93987512 | ID=Msa0966050-mRNA-1:three_prime_utr;Parent=Msa0966050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
