Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0925840 | XP_003620871.1 | 70.588 | 238 | 3 | 2 | 1 | 171 | 1 | 238 | 6.55e-105 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0925840 | sp|Q9C5D7|CAMT3_ARATH | 53.488 | 172 | 58 | 1 | 21 | 170 | 60 | 231 | 2.66e-60 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0679810 | Msa0925840 | 0.820792 | 5.686575e-53 | -8.615850e-47 |
| Msa0436190 | Msa0925840 | 0.800690 | 1.280618e-48 | -8.615850e-47 |
| Msa0279410 | Msa0925840 | 0.830854 | 2.323146e-55 | -8.615850e-47 |
| Msa0534410 | Msa0925840 | 0.810591 | 1.068206e-50 | -8.615850e-47 |
| Msa0545290 | Msa0925840 | 0.822072 | 2.879836e-53 | -8.615850e-47 |
| Msa0600890 | Msa0925840 | 0.822942 | 1.808588e-53 | -8.615850e-47 |
| Msa0901370 | Msa0925840 | 0.827316 | 1.673769e-54 | -8.615850e-47 |
| Msa0925840 | Msa0966050 | 0.941274 | 5.531797e-101 | -8.615850e-47 |
| Msa0925840 | Msa1001290 | 0.846701 | 1.840491e-59 | -8.615850e-47 |
| Msa0925840 | Msa1150800 | 0.801659 | 8.111482e-49 | -8.615850e-47 |
| Msa0925840 | Msa1172130 | -0.802994 | 4.306473e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0925840 | MtrunA17_Chr6g0487981 | 70.588 | 238 | 3 | 2 | 1 | 171 | 1 | 238 | 6.02e-109 | 310 |
| Msa0925840 | MtrunA17_Chr8g0344401 | 60.465 | 172 | 45 | 2 | 21 | 169 | 62 | 233 | 1.77e-67 | 205 |
| Msa0925840 | MtrunA17_Chr8g0389361 | 59.146 | 164 | 45 | 1 | 30 | 171 | 77 | 240 | 4.94e-62 | 191 |
| Msa0925840 | MtrunA17_Chr4g0053021 | 50.000 | 174 | 62 | 3 | 21 | 170 | 73 | 245 | 5.98e-54 | 171 |
| Msa0925840 | MtrunA17_Chr4g0053031 | 50.857 | 175 | 61 | 3 | 21 | 171 | 75 | 248 | 1.10e-53 | 170 |
| Msa0925840 | MtrunA17_Chr4g0053241 | 50.575 | 174 | 61 | 3 | 21 | 170 | 75 | 247 | 4.83e-53 | 169 |
| Msa0925840 | MtrunA17_Chr4g0053331 | 49.425 | 174 | 63 | 4 | 21 | 170 | 70 | 242 | 7.52e-53 | 168 |
| Msa0925840 | MtrunA17_Chr4g0044581 | 50.289 | 173 | 63 | 2 | 21 | 170 | 74 | 246 | 1.38e-52 | 167 |
| Msa0925840 | MtrunA17_Chr4g0051041 | 48.235 | 170 | 66 | 2 | 21 | 168 | 58 | 227 | 9.96e-51 | 162 |
| Msa0925840 | MtrunA17_Chr2g0312921 | 34.706 | 170 | 85 | 2 | 21 | 169 | 133 | 297 | 9.37e-33 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0925840 | AT4G26220.1 | 53.488 | 172 | 58 | 1 | 21 | 170 | 60 | 231 | 2.71e-61 | 189 |
| Msa0925840 | AT1G67980.1 | 53.254 | 169 | 60 | 1 | 21 | 170 | 63 | 231 | 6.36e-59 | 184 |
| Msa0925840 | AT1G24735.3 | 50.877 | 171 | 63 | 1 | 21 | 170 | 24 | 194 | 1.63e-56 | 176 |
| Msa0925840 | AT1G24735.1 | 50.877 | 171 | 63 | 1 | 21 | 170 | 69 | 239 | 6.12e-56 | 176 |
| Msa0925840 | AT1G24735.2 | 50.877 | 171 | 63 | 1 | 21 | 170 | 120 | 290 | 1.99e-55 | 176 |
| Msa0925840 | AT4G34050.1 | 48.276 | 174 | 67 | 2 | 21 | 171 | 86 | 259 | 6.03e-52 | 167 |
| Msa0925840 | AT4G34050.3 | 48.276 | 174 | 67 | 2 | 21 | 171 | 113 | 286 | 8.33e-52 | 167 |
| Msa0925840 | AT1G67990.1 | 48.235 | 170 | 68 | 1 | 21 | 170 | 63 | 232 | 9.78e-51 | 163 |
| Msa0925840 | AT1G67980.2 | 45.062 | 162 | 70 | 1 | 28 | 170 | 2 | 163 | 3.67e-42 | 139 |
| Msa0925840 | AT3G61990.1 | 37.647 | 170 | 80 | 2 | 21 | 169 | 125 | 289 | 7.04e-34 | 121 |
| Msa0925840 | AT3G62000.1 | 35.882 | 170 | 83 | 2 | 21 | 169 | 113 | 277 | 1.81e-33 | 120 |
| Msa0925840 | AT4G34050.2 | 49.074 | 108 | 52 | 2 | 67 | 171 | 41 | 148 | 1.01e-29 | 106 |
| Msa0925840 | AT3G62000.2 | 35.000 | 160 | 78 | 2 | 21 | 159 | 113 | 267 | 8.28e-27 | 103 |
Find 30 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAGGAAAACTTATGAAAT+TGG | 0.203207 | 6_2:+69135129 | Msa0925840:CDS |
| ATTCTTAGCTCTCATAATTA+AGG | 0.258836 | 6_2:+69134029 | Msa0925840:five_prime_UTR |
| TCAAATGTTCCTTCATTTGT+AGG | 0.273170 | 6_2:-69136009 | None:intergenic |
| ACTGATAATCAAATAACTTT+AGG | 0.273686 | 6_2:-69136308 | None:intergenic |
| CAAAATGAAACTTTATTCAT+AGG | 0.361846 | 6_2:-69136392 | None:intergenic |
| TGCACTGGAACATTCTCTTC+AGG | 0.394174 | 6_2:-69136156 | None:intergenic |
| GTTGATTGATTGTAGAGAAA+TGG | 0.395099 | 6_2:+69134237 | Msa0925840:intron |
| GTCTCAGTATAGCCTTGTTA+TGG | 0.410125 | 6_2:-69133983 | None:intergenic |
| CCATGAAAGACTGATAAAAC+TGG | 0.437778 | 6_2:+69136074 | Msa0925840:CDS |
| GAATTTGCTCTCACTTCTGT+TGG | 0.447217 | 6_2:+69136243 | Msa0925840:CDS |
| GCTCTCACTTCTGTTGGTGA+TGG | 0.468535 | 6_2:+69136249 | Msa0925840:CDS |
| ATGCAAACCTTTCCATCGTC+GGG | 0.470357 | 6_2:-69135005 | None:intergenic |
| CTACCTGTCATAAGAAAGGC+TGG | 0.478364 | 6_2:+69135153 | Msa0925840:CDS |
| CTGATAAAACTGGTCAAAGT+TGG | 0.482685 | 6_2:+69136084 | Msa0925840:CDS |
| ATGATGCAGCCTACAAATGA+AGG | 0.509526 | 6_2:+69136000 | Msa0925840:intron |
| ACTCCAGCCTTTCTTATGAC+AGG | 0.521115 | 6_2:-69135156 | None:intergenic |
| TCCTCACTCTGCAATATGAC+AGG | 0.523248 | 6_2:-69134292 | None:intergenic |
| ATAAAACTGGTCAAAGTTGG+TGG | 0.527329 | 6_2:+69136087 | Msa0925840:CDS |
| TGGACTACCTGTCATAAGAA+AGG | 0.529586 | 6_2:+69135149 | Msa0925840:CDS |
| CGGGAATGTTGAGTGCAGTA+AGG | 0.537602 | 6_2:-69134986 | None:intergenic |
| CTCTGTGGTCTAGAATGCAC+TGG | 0.539673 | 6_2:-69136171 | None:intergenic |
| TTACAGCCATAGATATTGAC+AGG | 0.548694 | 6_2:+69135112 | Msa0925840:CDS |
| TATGGGGTGGACGTGTTGCA+TGG | 0.558956 | 6_2:+69136133 | Msa0925840:CDS |
| TATGCAAACCTTTCCATCGT+CGG | 0.561122 | 6_2:-69135006 | None:intergenic |
| CAACATTCCCGACGATGGAA+AGG | 0.570116 | 6_2:+69134998 | Msa0925840:CDS |
| TCAATTGCTGCTAGTCTCTG+TGG | 0.590797 | 6_2:-69136186 | None:intergenic |
| TCCTGTCATATTGCAGAGTG+AGG | 0.598598 | 6_2:+69134291 | Msa0925840:CDS |
| GCACTCAACATTCCCGACGA+TGG | 0.616697 | 6_2:+69134993 | Msa0925840:CDS |
| GCAGAGTGAGGACTTAACAA+AGG | 0.657033 | 6_2:+69134303 | Msa0925840:CDS |
| GTGATATTATGTCCATAACA+AGG | 0.671530 | 6_2:+69133971 | Msa0925840:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAATAATTGTTTAGTT+TGG | - | chr6_2:69134117-69134136 | None:intergenic | 10.0% |
| !! | AGAGTAAATTAAATATGAAT+TGG | - | chr6_2:69134151-69134170 | None:intergenic | 15.0% |
| !! | AAGATAGTAAGAAAAAAAAA+TGG | - | chr6_2:69134361-69134380 | None:intergenic | 15.0% |
| !!! | TTTAATTTCGTAAACTAAAT+TGG | + | chr6_2:69135934-69135953 | Msa0925840:intron | 15.0% |
| !!! | TTATATATGACAACATTTTA+TGG | + | chr6_2:69136115-69136134 | Msa0925840:CDS | 15.0% |
| !!! | TATATATGACAACATTTTAT+GGG | + | chr6_2:69136116-69136135 | Msa0925840:CDS | 15.0% |
| !!! | TAATATCACTGCTTTTTAAT+GGG | - | chr6_2:69133960-69133979 | None:intergenic | 20.0% |
| !!! | ATAATATCACTGCTTTTTAA+TGG | - | chr6_2:69133961-69133980 | None:intergenic | 20.0% |
| !!! | ATAATTGTTTAGTTTGGATT+TGG | - | chr6_2:69134111-69134130 | None:intergenic | 20.0% |
| !!! | CTTTTCCTTATTTTTTTCTT+TGG | + | chr6_2:69134175-69134194 | Msa0925840:intron | 20.0% |
| !! | CAAAACCAAAGAAAAAAATA+AGG | - | chr6_2:69134183-69134202 | None:intergenic | 20.0% |
| !!! | CTTATTTTTTTCTTTGGTTT+TGG | + | chr6_2:69134181-69134200 | Msa0925840:intron | 20.0% |
| !! | CTTCAAGATTATGATTTAAT+TGG | + | chr6_2:69134562-69134581 | Msa0925840:intron | 20.0% |
| !! | ACAATATCGAATTATATCTA+AGG | - | chr6_2:69135041-69135060 | None:intergenic | 20.0% |
| !! | TTCTTAGTTTATTATCTGTT+TGG | + | chr6_2:69135256-69135275 | Msa0925840:intron | 20.0% |
| !! | AAAAAATTCATACATGTCAT+AGG | - | chr6_2:69135342-69135361 | None:intergenic | 20.0% |
| !! | CTTAAAATGGAAATAGATTT+AGG | - | chr6_2:69135455-69135474 | None:intergenic | 20.0% |
| !!! | TATGTTATCAACAACTTTTA+GGG | - | chr6_2:69135512-69135531 | None:intergenic | 20.0% |
| !!! | AATGATTTTTAATGTTACGT+AGG | - | chr6_2:69135905-69135924 | None:intergenic | 20.0% |
| !!! | ATTTTTTGACAATTTTTGTG+TGG | + | chr6_2:69135971-69135990 | Msa0925840:intron | 20.0% |
| !!! | ATATATGACAACATTTTATG+GGG | + | chr6_2:69136117-69136136 | Msa0925840:CDS | 20.0% |
| !! | ACTGATAATCAAATAACTTT+AGG | - | chr6_2:69136311-69136330 | None:intergenic | 20.0% |
| !! | CAAAATGAAACTTTATTCAT+AGG | - | chr6_2:69136395-69136414 | None:intergenic | 20.0% |
| !! | ATTCTTAGCTCTCATAATTA+AGG | + | chr6_2:69134029-69134048 | Msa0925840:five_prime_UTR | 25.0% |
| ! | AGAAGATAGAATAATTACCA+AGG | - | chr6_2:69134501-69134520 | None:intergenic | 25.0% |
| !!! | TTCTGCAATGTTTTGAAATT+CGG | + | chr6_2:69134517-69134536 | Msa0925840:intron | 25.0% |
| !!! | CGTTTTAAAATTGAACAGAT+CGG | - | chr6_2:69134812-69134831 | None:intergenic | 25.0% |
| ! | AAAACGTTAGTATATTGTGA+TGG | + | chr6_2:69134826-69134845 | Msa0925840:intron | 25.0% |
| ! | CTAGAAATGTGAACTTAAAA+TGG | - | chr6_2:69135468-69135487 | None:intergenic | 25.0% |
| !! | GTATGTTATCAACAACTTTT+AGG | - | chr6_2:69135513-69135532 | None:intergenic | 25.0% |
| !!! | ATACATTTCTAGTAGATCTT+CGG | + | chr6_2:69135529-69135548 | Msa0925840:intron | 25.0% |
| GTGATATTATGTCCATAACA+AGG | + | chr6_2:69133971-69133990 | Msa0925840:five_prime_UTR | 30.0% | |
| GTTGATTGATTGTAGAGAAA+TGG | + | chr6_2:69134237-69134256 | Msa0925840:intron | 30.0% | |
| ! | ACAGGATTTTTGTAGATTGA+TGG | - | chr6_2:69134277-69134296 | None:intergenic | 30.0% |
| AATTGTGTGGCAGTATATAT+TGG | + | chr6_2:69134410-69134429 | Msa0925840:intron | 30.0% | |
| AGATTCAACGCAAATCAATA+CGG | + | chr6_2:69134713-69134732 | Msa0925840:intron | 30.0% | |
| GTATATTGTGATGGTTAACT+TGG | + | chr6_2:69134835-69134854 | Msa0925840:intron | 30.0% | |
| !! | TTGGTTTTCATATTCATCCA+GGG | + | chr6_2:69134854-69134873 | Msa0925840:intron | 30.0% |
| ! | AGTTTTCCTGTCAATATCTA+TGG | - | chr6_2:69135121-69135140 | None:intergenic | 30.0% |
| GACAGGAAAACTTATGAAAT+TGG | + | chr6_2:69135129-69135148 | Msa0925840:CDS | 30.0% | |
| TCTAGCAGTTTATCCAAAAT+TGG | - | chr6_2:69135219-69135238 | None:intergenic | 30.0% | |
| TTCGGTTAAGGTAATTAGTT+AGG | + | chr6_2:69135547-69135566 | Msa0925840:intron | 30.0% | |
| ! | AATGTTACGTAGGTTGAAAT+TGG | - | chr6_2:69135895-69135914 | None:intergenic | 30.0% |
| TCAAATGTTCCTTCATTTGT+AGG | - | chr6_2:69136012-69136031 | None:intergenic | 30.0% | |
| CTCATTGATGAACAATTGTG+TGG | + | chr6_2:69134397-69134416 | Msa0925840:intron | 35.0% | |
| TATCTGTCATCCAGTTTAAC+CGG | - | chr6_2:69134603-69134622 | None:intergenic | 35.0% | |
| GCGTTGAATCTGTTAAACTA+CGG | - | chr6_2:69134704-69134723 | None:intergenic | 35.0% | |
| TTCTCTGTTGTATTGTAGTC+TGG | - | chr6_2:69134744-69134763 | None:intergenic | 35.0% | |
| !! | CTTGGTTTTCATATTCATCC+AGG | + | chr6_2:69134853-69134872 | Msa0925840:intron | 35.0% |
| ! | TGGTTTTCATATTCATCCAG+GGG | + | chr6_2:69134855-69134874 | Msa0925840:intron | 35.0% |
| TTTCATAGCAACTTTACCTG+AGG | + | chr6_2:69134878-69134897 | Msa0925840:intron | 35.0% | |
| TCCCAAAAAGACAATTGAAG+TGG | + | chr6_2:69134938-69134957 | Msa0925840:CDS | 35.0% | |
| ! | CCCACTTCAATTGTCTTTTT+GGG | - | chr6_2:69134942-69134961 | None:intergenic | 35.0% |
| CCCAAAAAGACAATTGAAGT+GGG | + | chr6_2:69134939-69134958 | Msa0925840:CDS | 35.0% | |
| CCAAAAAGACAATTGAAGTG+GGG | + | chr6_2:69134940-69134959 | Msa0925840:CDS | 35.0% | |
| CAAAAAGACAATTGAAGTGG+GGG | + | chr6_2:69134941-69134960 | Msa0925840:CDS | 35.0% | |
| TTACAGCCATAGATATTGAC+AGG | + | chr6_2:69135112-69135131 | Msa0925840:CDS | 35.0% | |
| TTATCCAAAATTGGTAGAGC+TGG | - | chr6_2:69135210-69135229 | None:intergenic | 35.0% | |
| ATCATGATGTTTGTCCAAAC+AGG | + | chr6_2:69135428-69135447 | Msa0925840:intron | 35.0% | |
| TCATGATGTTTGTCCAAACA+GGG | + | chr6_2:69135429-69135448 | Msa0925840:intron | 35.0% | |
| AAATAGATTTAGGCCCTGTT+TGG | - | chr6_2:69135445-69135464 | None:intergenic | 35.0% | |
| TTCTAGTAGATCTTCGGTTA+AGG | + | chr6_2:69135535-69135554 | Msa0925840:intron | 35.0% | |
| ! | TCTCATTCTCTCGTTTTACA+AGG | - | chr6_2:69135665-69135684 | None:intergenic | 35.0% |
| AAATAGAACGTTCAAGTGAG+CGG | + | chr6_2:69135716-69135735 | Msa0925840:intron | 35.0% | |
| ACACAAGATTTATCGAGGTT+CGG | - | chr6_2:69135849-69135868 | None:intergenic | 35.0% | |
| TGTACACACAAGATTTATCG+AGG | - | chr6_2:69135854-69135873 | None:intergenic | 35.0% | |
| !! | CCAGTTTTATCAGTCTTTCA+TGG | - | chr6_2:69136077-69136096 | None:intergenic | 35.0% |
| CCATGAAAGACTGATAAAAC+TGG | + | chr6_2:69136074-69136093 | Msa0925840:CDS | 35.0% | |
| CTGATAAAACTGGTCAAAGT+TGG | + | chr6_2:69136084-69136103 | Msa0925840:CDS | 35.0% | |
| ATAAAACTGGTCAAAGTTGG+TGG | + | chr6_2:69136087-69136106 | Msa0925840:CDS | 35.0% | |
| ! | TATGACAACATTTTATGGGG+TGG | + | chr6_2:69136120-69136139 | Msa0925840:CDS | 35.0% |
| !!! | ACTGCTTTTTAATGGGAGAG+GGG | - | chr6_2:69133953-69133972 | None:intergenic | 40.0% |
| !!! | CACTGCTTTTTAATGGGAGA+GGG | - | chr6_2:69133954-69133973 | None:intergenic | 40.0% |
| !!! | TCACTGCTTTTTAATGGGAG+AGG | - | chr6_2:69133955-69133974 | None:intergenic | 40.0% |
| !! | GTCTCAGTATAGCCTTGTTA+TGG | - | chr6_2:69133986-69134005 | None:intergenic | 40.0% |
| TTACCAAGGATGATTCTCAG+TGG | - | chr6_2:69134487-69134506 | None:intergenic | 40.0% | |
| TTGGTTCAATCAGTTCACTC+CGG | + | chr6_2:69134581-69134600 | Msa0925840:intron | 40.0% | |
| TAAAGTTGCTATGAAACCCC+TGG | - | chr6_2:69134874-69134893 | None:intergenic | 40.0% | |
| ! | CCCCACTTCAATTGTCTTTT+TGG | - | chr6_2:69134943-69134962 | None:intergenic | 40.0% |
| TATGCAAACCTTTCCATCGT+CGG | - | chr6_2:69135009-69135028 | None:intergenic | 40.0% | |
| TTCGATATTGTCCTCGATAC+TGG | + | chr6_2:69135050-69135069 | Msa0925840:intron | 40.0% | |
| TGGACTACCTGTCATAAGAA+AGG | + | chr6_2:69135149-69135168 | Msa0925840:CDS | 40.0% | |
| !! | CATTTCTAGTAGCGAATCAC+TGG | + | chr6_2:69135479-69135498 | Msa0925840:intron | 40.0% |
| !! | AGCGTTTTGGACAAGTTAGT+TGG | + | chr6_2:69135577-69135596 | Msa0925840:intron | 40.0% |
| ! | GGACAAGTTAGTTGGTGTTT+CGG | + | chr6_2:69135585-69135604 | Msa0925840:intron | 40.0% |
| AATAGAACGTTCAAGTGAGC+GGG | + | chr6_2:69135717-69135736 | Msa0925840:intron | 40.0% | |
| ATGATGCAGCCTACAAATGA+AGG | + | chr6_2:69136000-69136019 | Msa0925840:intron | 40.0% | |
| ! | GAATTTGCTCTCACTTCTGT+TGG | + | chr6_2:69136243-69136262 | Msa0925840:CDS | 40.0% |
| TCCTGTCATATTGCAGAGTG+AGG | + | chr6_2:69134291-69134310 | Msa0925840:CDS | 45.0% | |
| TCCTCACTCTGCAATATGAC+AGG | - | chr6_2:69134295-69134314 | None:intergenic | 45.0% | |
| GCAGAGTGAGGACTTAACAA+AGG | + | chr6_2:69134303-69134322 | Msa0925840:CDS | 45.0% | |
| ATGCCACTGAGAATCATCCT+TGG | + | chr6_2:69134481-69134500 | Msa0925840:intron | 45.0% | |
| TCAGTTCACTCCGGTTAAAC+TGG | + | chr6_2:69134590-69134609 | Msa0925840:intron | 45.0% | |
| GAACAAACCAACTGACGAGT+TGG | + | chr6_2:69134761-69134780 | Msa0925840:intron | 45.0% | |
| !! | AAACCAACTGACGAGTTGGT+CGG | + | chr6_2:69134765-69134784 | Msa0925840:intron | 45.0% |
| ATAGCAACTTTACCTGAGGC+TGG | + | chr6_2:69134882-69134901 | Msa0925840:intron | 45.0% | |
| !! | ATTGAAGTGGGGGTGTTTAC+TGG | + | chr6_2:69134951-69134970 | Msa0925840:CDS | 45.0% |
| ATGCAAACCTTTCCATCGTC+GGG | - | chr6_2:69135008-69135027 | None:intergenic | 45.0% | |
| GATATTGTCCTCGATACTGG+AGG | + | chr6_2:69135053-69135072 | Msa0925840:intron | 45.0% | |
| AGAAACTACCTCCAGTATCG+AGG | - | chr6_2:69135064-69135083 | None:intergenic | 45.0% | |
| CTACCTGTCATAAGAAAGGC+TGG | + | chr6_2:69135153-69135172 | Msa0925840:CDS | 45.0% | |
| ACTCCAGCCTTTCTTATGAC+AGG | - | chr6_2:69135159-69135178 | None:intergenic | 45.0% | |
| TGTCATAAGAAAGGCTGGAG+TGG | + | chr6_2:69135158-69135177 | Msa0925840:intron | 45.0% | |
| ! | GTCTCCAGCTCTACCAATTT+TGG | + | chr6_2:69135203-69135222 | Msa0925840:intron | 45.0% |
| ACTTGTCCAAAACGCTGAAC+AGG | - | chr6_2:69135573-69135592 | None:intergenic | 45.0% | |
| TGCACTGGAACATTCTCTTC+AGG | - | chr6_2:69136159-69136178 | None:intergenic | 45.0% | |
| ! | TCAATTGCTGCTAGTCTCTG+TGG | - | chr6_2:69136189-69136208 | None:intergenic | 45.0% |
| GCATTCCTCAGCTCTTTGAG+AGG | - | chr6_2:69134465-69134484 | None:intergenic | 50.0% | |
| ! | TGGTCGGTTCTCTGTTCAAC+TGG | + | chr6_2:69134781-69134800 | Msa0925840:intron | 50.0% |
| ! | GTGATTAGTTGACCAGCCTC+AGG | - | chr6_2:69134897-69134916 | None:intergenic | 50.0% |
| CGGGAATGTTGAGTGCAGTA+AGG | - | chr6_2:69134989-69135008 | None:intergenic | 50.0% | |
| CAACATTCCCGACGATGGAA+AGG | + | chr6_2:69134998-69135017 | Msa0925840:CDS | 50.0% | |
| ! | GTTAGGCCTGTTCAGCGTTT+TGG | + | chr6_2:69135564-69135583 | Msa0925840:intron | 50.0% |
| ATCAACCTCGACGAGGATGT+AGG | + | chr6_2:69135810-69135829 | Msa0925840:intron | 50.0% | |
| TGAATCCTACATCCTCGTCG+AGG | - | chr6_2:69135818-69135837 | None:intergenic | 50.0% | |
| ! | CTCTGTGGTCTAGAATGCAC+TGG | - | chr6_2:69136174-69136193 | None:intergenic | 50.0% |
| ! | GCTCTCACTTCTGTTGGTGA+TGG | + | chr6_2:69136249-69136268 | Msa0925840:CDS | 50.0% |
| TGAGAGGCTCAGGCTCTCTA+GGG | - | chr6_2:69134449-69134468 | None:intergenic | 55.0% | |
| TTGAGAGGCTCAGGCTCTCT+AGG | - | chr6_2:69134450-69134469 | None:intergenic | 55.0% | |
| ! | CTCAGCTCTTTGAGAGGCTC+AGG | - | chr6_2:69134459-69134478 | None:intergenic | 55.0% |
| CTGAGCCTCTCAAAGAGCTG+AGG | + | chr6_2:69134457-69134476 | Msa0925840:intron | 55.0% | |
| GAACCGACCAACTCGTCAGT+TGG | - | chr6_2:69134771-69134790 | None:intergenic | 55.0% | |
| GCACTCAACATTCCCGACGA+TGG | + | chr6_2:69134993-69135012 | Msa0925840:CDS | 55.0% | |
| TGCTGAGATCAACCTCGACG+AGG | + | chr6_2:69135803-69135822 | Msa0925840:intron | 55.0% | |
| TATGGGGTGGACGTGTTGCA+TGG | + | chr6_2:69136133-69136152 | Msa0925840:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 69133917 | 69136428 | 69133917 | ID=Msa0925840;Name=Msa0925840 |
| chr6_2 | mRNA | 69133917 | 69136428 | 69133917 | ID=Msa0925840-mRNA-1;Parent=Msa0925840;Name=Msa0925840-mRNA-1;_AED=0.12;_eAED=0.12;_QI=138|0.5|0.6|1|0.75|0.8|5|129|171 |
| chr6_2 | exon | 69133917 | 69134050 | 69133917 | ID=Msa0925840-mRNA-1:exon:11127;Parent=Msa0925840-mRNA-1 |
| chr6_2 | exon | 69134252 | 69134324 | 69134252 | ID=Msa0925840-mRNA-1:exon:11128;Parent=Msa0925840-mRNA-1 |
| chr6_2 | exon | 69134930 | 69135019 | 69134930 | ID=Msa0925840-mRNA-1:exon:11129;Parent=Msa0925840-mRNA-1 |
| chr6_2 | exon | 69135111 | 69135176 | 69135111 | ID=Msa0925840-mRNA-1:exon:11130;Parent=Msa0925840-mRNA-1 |
| chr6_2 | exon | 69136009 | 69136428 | 69136009 | ID=Msa0925840-mRNA-1:exon:11131;Parent=Msa0925840-mRNA-1 |
| chr6_2 | five_prime_UTR | 69133917 | 69134050 | 69133917 | ID=Msa0925840-mRNA-1:five_prime_utr;Parent=Msa0925840-mRNA-1 |
| chr6_2 | five_prime_UTR | 69134252 | 69134255 | 69134252 | ID=Msa0925840-mRNA-1:five_prime_utr;Parent=Msa0925840-mRNA-1 |
| chr6_2 | CDS | 69134256 | 69134324 | 69134256 | ID=Msa0925840-mRNA-1:cds;Parent=Msa0925840-mRNA-1 |
| chr6_2 | CDS | 69134930 | 69135019 | 69134930 | ID=Msa0925840-mRNA-1:cds;Parent=Msa0925840-mRNA-1 |
| chr6_2 | CDS | 69135111 | 69135176 | 69135111 | ID=Msa0925840-mRNA-1:cds;Parent=Msa0925840-mRNA-1 |
| chr6_2 | CDS | 69136009 | 69136299 | 69136009 | ID=Msa0925840-mRNA-1:cds;Parent=Msa0925840-mRNA-1 |
| chr6_2 | three_prime_UTR | 69136300 | 69136428 | 69136300 | ID=Msa0925840-mRNA-1:three_prime_utr;Parent=Msa0925840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
