Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114030 | KYP59719.1 | 65.625 | 64 | 13 | 2 | 26 | 80 | 36 | 99 | 1.54e-17 | 80.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114030 | A0A151SY40 | 65.625 | 64 | 13 | 2 | 26 | 80 | 36 | 99 | 7.37e-18 | 80.5 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa1114030 | 0.823272 | 1.514142e-53 | -8.615850e-47 |
| Msa0011170 | Msa1114030 | 0.802571 | 5.266142e-49 | -8.615850e-47 |
| Msa0014710 | Msa1114030 | 0.812234 | 4.696613e-51 | -8.615850e-47 |
| Msa0016570 | Msa1114030 | 0.808483 | 3.029491e-50 | -8.615850e-47 |
| Msa0016580 | Msa1114030 | 0.810312 | 1.226916e-50 | -8.615850e-47 |
| Msa0036920 | Msa1114030 | 0.818547 | 1.852069e-52 | -8.615850e-47 |
| Msa0044260 | Msa1114030 | 0.818864 | 1.568991e-52 | -8.615850e-47 |
| Msa0044330 | Msa1114030 | 0.814867 | 1.237987e-51 | -8.615850e-47 |
| Msa0056530 | Msa1114030 | 0.821286 | 4.377213e-53 | -8.615850e-47 |
| Msa0071500 | Msa1114030 | 0.807674 | 4.505014e-50 | -8.615850e-47 |
| Msa0105070 | Msa1114030 | 0.817175 | 3.778652e-52 | -8.615850e-47 |
| Msa0110270 | Msa1114030 | 0.800893 | 1.163862e-48 | -8.615850e-47 |
| Msa0114060 | Msa1114030 | 0.819142 | 1.356169e-52 | -8.615850e-47 |
| Msa0639610 | Msa1114030 | 0.819743 | 9.893926e-53 | -8.615850e-47 |
| Msa0650630 | Msa1114030 | 0.802000 | 6.904062e-49 | -8.615850e-47 |
| Msa0661230 | Msa1114030 | 0.807045 | 6.123479e-50 | -8.615850e-47 |
| Msa0672690 | Msa1114030 | 0.810460 | 1.140156e-50 | -8.615850e-47 |
| Msa0688270 | Msa1114030 | 0.811720 | 6.080819e-51 | -8.615850e-47 |
| Msa0694370 | Msa1114030 | 0.810144 | 1.333964e-50 | -8.615850e-47 |
| Msa0697060 | Msa1114030 | 0.809894 | 1.510260e-50 | -8.615850e-47 |
| Msa0724210 | Msa1114030 | 0.813035 | 3.138682e-51 | -8.615850e-47 |
| Msa0725850 | Msa1114030 | 0.803150 | 3.999441e-49 | -8.615850e-47 |
| Msa0729800 | Msa1114030 | 0.813112 | 3.018983e-51 | -8.615850e-47 |
| Msa0731940 | Msa1114030 | 0.809706 | 1.657240e-50 | -8.615850e-47 |
| Msa0733290 | Msa1114030 | 0.801466 | 8.885723e-49 | -8.615850e-47 |
| Msa0735170 | Msa1114030 | 0.800297 | 1.539539e-48 | -8.615850e-47 |
| Msa0743810 | Msa1114030 | 0.814898 | 1.218246e-51 | -8.615850e-47 |
| Msa0753720 | Msa1114030 | 0.800510 | 1.393394e-48 | -8.615850e-47 |
| Msa0755180 | Msa1114030 | 0.815132 | 1.081305e-51 | -8.615850e-47 |
| Msa0759410 | Msa1114030 | 0.807955 | 3.924839e-50 | -8.615850e-47 |
| Msa0760130 | Msa1114030 | 0.835967 | 1.232779e-56 | -8.615850e-47 |
| Msa0763440 | Msa1114030 | 0.817945 | 2.534635e-52 | -8.615850e-47 |
| Msa0766630 | Msa1114030 | 0.856148 | 3.913794e-62 | -8.615850e-47 |
| Msa0767720 | Msa1114030 | 0.802037 | 6.784236e-49 | -8.615850e-47 |
| Msa0768290 | Msa1114030 | 0.826820 | 2.198684e-54 | -8.615850e-47 |
| Msa0768310 | Msa1114030 | 0.808962 | 2.392692e-50 | -8.615850e-47 |
| Msa0768370 | Msa1114030 | 0.816722 | 4.777596e-52 | -8.615850e-47 |
| Msa0783160 | Msa1114030 | 0.802557 | 5.303000e-49 | -8.615850e-47 |
| Msa0784290 | Msa1114030 | 0.817368 | 3.418796e-52 | -8.615850e-47 |
| Msa0808010 | Msa1114030 | 0.802843 | 4.629159e-49 | -8.615850e-47 |
| Msa0810220 | Msa1114030 | 0.817053 | 4.025712e-52 | -8.615850e-47 |
| Msa0811080 | Msa1114030 | 0.816386 | 5.681513e-52 | -8.615850e-47 |
| Msa0813400 | Msa1114030 | 0.814870 | 1.236315e-51 | -8.615850e-47 |
| Msa0820850 | Msa1114030 | 0.835013 | 2.147878e-56 | -8.615850e-47 |
| Msa0824600 | Msa1114030 | 0.807057 | 6.087982e-50 | -8.615850e-47 |
| Msa0130970 | Msa1114030 | 0.819728 | 9.970033e-53 | -8.615850e-47 |
| Msa0142220 | Msa1114030 | 0.858373 | 8.615706e-63 | -8.615850e-47 |
| Msa0187250 | Msa1114030 | 0.802278 | 6.053046e-49 | -8.615850e-47 |
| Msa0188460 | Msa1114030 | 0.846383 | 2.247636e-59 | -8.615850e-47 |
| Msa0194440 | Msa1114030 | 0.810759 | 9.823913e-51 | -8.615850e-47 |
| Msa0198910 | Msa1114030 | 0.815828 | 7.569796e-52 | -8.615850e-47 |
| Msa0208090 | Msa1114030 | 0.812330 | 4.475756e-51 | -8.615850e-47 |
| Msa0223410 | Msa1114030 | -0.805209 | 1.491041e-49 | -8.615850e-47 |
| Msa0227480 | Msa1114030 | 0.828533 | 8.525550e-55 | -8.615850e-47 |
| Msa0229590 | Msa1114030 | 0.806818 | 6.839671e-50 | -8.615850e-47 |
| Msa0232850 | Msa1114030 | 0.815400 | 9.425306e-52 | -8.615850e-47 |
| Msa0233080 | Msa1114030 | 0.807163 | 5.779765e-50 | -8.615850e-47 |
| Msa0235140 | Msa1114030 | 0.802228 | 6.197212e-49 | -8.615850e-47 |
| Msa0384890 | Msa1114030 | 0.862325 | 5.489155e-64 | -8.615850e-47 |
| Msa0390070 | Msa1114030 | 0.832949 | 7.058680e-56 | -8.615850e-47 |
| Msa0391430 | Msa1114030 | 0.805434 | 1.337593e-49 | -8.615850e-47 |
| Msa0402290 | Msa1114030 | 0.822417 | 2.395254e-53 | -8.615850e-47 |
| Msa0407750 | Msa1114030 | 0.815250 | 1.017791e-51 | -8.615850e-47 |
| Msa0415980 | Msa1114030 | 0.802367 | 5.801815e-49 | -8.615850e-47 |
| Msa0419980 | Msa1114030 | 0.814692 | 1.353560e-51 | -8.615850e-47 |
| Msa0430420 | Msa1114030 | 0.811458 | 6.931658e-51 | -8.615850e-47 |
| Msa0435230 | Msa1114030 | 0.828409 | 9.135258e-55 | -8.615850e-47 |
| Msa0436780 | Msa1114030 | 0.816247 | 6.102454e-52 | -8.615850e-47 |
| Msa0436800 | Msa1114030 | 0.837212 | 5.939625e-57 | -8.615850e-47 |
| Msa0466120 | Msa1114030 | 0.812540 | 4.026759e-51 | -8.615850e-47 |
| Msa0469940 | Msa1114030 | -0.805858 | 1.089619e-49 | -8.615850e-47 |
| Msa0479340 | Msa1114030 | 0.848892 | 4.587372e-60 | -8.615850e-47 |
| Msa0981370 | Msa1114030 | 0.818159 | 2.266614e-52 | -8.615850e-47 |
| Msa0985560 | Msa1114030 | 0.809964 | 1.458556e-50 | -8.615850e-47 |
| Msa0989060 | Msa1114030 | 0.808533 | 2.955648e-50 | -8.615850e-47 |
| Msa0989360 | Msa1114030 | 0.808574 | 2.896135e-50 | -8.615850e-47 |
| Msa0998690 | Msa1114030 | 0.826419 | 2.740993e-54 | -8.615850e-47 |
| Msa1000880 | Msa1114030 | 0.804702 | 1.902623e-49 | -8.615850e-47 |
| Msa1000890 | Msa1114030 | 0.802734 | 4.875272e-49 | -8.615850e-47 |
| Msa1000900 | Msa1114030 | 0.821406 | 4.106225e-53 | -8.615850e-47 |
| Msa1014540 | Msa1114030 | 0.826221 | 3.055173e-54 | -8.615850e-47 |
| Msa1016280 | Msa1114030 | 0.812880 | 3.393175e-51 | -8.615850e-47 |
| Msa1023950 | Msa1114030 | 0.816094 | 6.599943e-52 | -8.615850e-47 |
| Msa1025360 | Msa1114030 | 0.806328 | 8.675713e-50 | -8.615850e-47 |
| Msa1028970 | Msa1114030 | 0.806310 | 8.751297e-50 | -8.615850e-47 |
| Msa1034300 | Msa1114030 | 0.802992 | 4.311033e-49 | -8.615850e-47 |
| Msa1044840 | Msa1114030 | 0.805908 | 1.063407e-49 | -8.615850e-47 |
| Msa1059570 | Msa1114030 | 0.802090 | 6.617160e-49 | -8.615850e-47 |
| Msa1075220 | Msa1114030 | -0.807682 | 4.485875e-50 | -8.615850e-47 |
| Msa1075650 | Msa1114030 | 0.814998 | 1.157549e-51 | -8.615850e-47 |
| Msa1082500 | Msa1114030 | 0.803543 | 3.316146e-49 | -8.615850e-47 |
| Msa1092990 | Msa1114030 | 0.819122 | 1.370804e-52 | -8.615850e-47 |
| Msa1099970 | Msa1114030 | 0.816863 | 4.439871e-52 | -8.615850e-47 |
| Msa1104090 | Msa1114030 | 0.801238 | 9.893153e-49 | -8.615850e-47 |
| Msa0239240 | Msa1114030 | 0.802284 | 6.034208e-49 | -8.615850e-47 |
| Msa0251320 | Msa1114030 | 0.812039 | 5.181862e-51 | -8.615850e-47 |
| Msa0251640 | Msa1114030 | 0.810453 | 1.143932e-50 | -8.615850e-47 |
| Msa0266720 | Msa1114030 | 0.808805 | 2.585560e-50 | -8.615850e-47 |
| Msa0267370 | Msa1114030 | 0.800155 | 1.645566e-48 | -8.615850e-47 |
| Msa0270520 | Msa1114030 | 0.809414 | 1.914288e-50 | -8.615850e-47 |
| Msa0273100 | Msa1114030 | 0.805811 | 1.114487e-49 | -8.615850e-47 |
| Msa0285450 | Msa1114030 | 0.808768 | 2.633174e-50 | -8.615850e-47 |
| Msa0288100 | Msa1114030 | 0.808616 | 2.837229e-50 | -8.615850e-47 |
| Msa0290870 | Msa1114030 | 0.835913 | 1.272305e-56 | -8.615850e-47 |
| Msa0305190 | Msa1114030 | 0.824549 | 7.601254e-54 | -8.615850e-47 |
| Msa0306210 | Msa1114030 | -0.802046 | 6.755141e-49 | -8.615850e-47 |
| Msa0321310 | Msa1114030 | 0.808816 | 2.571469e-50 | -8.615850e-47 |
| Msa0337900 | Msa1114030 | 0.818612 | 1.789842e-52 | -8.615850e-47 |
| Msa0340450 | Msa1114030 | 0.816535 | 5.259726e-52 | -8.615850e-47 |
| Msa0340470 | Msa1114030 | 0.809316 | 2.009362e-50 | -8.615850e-47 |
| Msa0342240 | Msa1114030 | 0.801780 | 7.660941e-49 | -8.615850e-47 |
| Msa0349360 | Msa1114030 | 0.801113 | 1.049581e-48 | -8.615850e-47 |
| Msa0355220 | Msa1114030 | 0.822806 | 1.944691e-53 | -8.615850e-47 |
| Msa0360510 | Msa1114030 | 0.805641 | 1.210117e-49 | -8.615850e-47 |
| Msa1114030 | Msa1116260 | 0.822618 | 2.151539e-53 | -8.615850e-47 |
| Msa1114030 | Msa1121480 | 0.824309 | 8.656676e-54 | -8.615850e-47 |
| Msa1114030 | Msa1121490 | 0.839216 | 1.809379e-57 | -8.615850e-47 |
| Msa1114030 | Msa1154280 | 0.808311 | 3.296456e-50 | -8.615850e-47 |
| Msa1114030 | Msa1162550 | -0.807775 | 4.285793e-50 | -8.615850e-47 |
| Msa1114030 | Msa1162780 | 0.803737 | 3.022596e-49 | -8.615850e-47 |
| Msa1114030 | Msa1163090 | 0.805392 | 1.364579e-49 | -8.615850e-47 |
| Msa1114030 | Msa1187950 | 0.826293 | 2.937857e-54 | -8.615850e-47 |
| Msa1114030 | Msa1195190 | 0.803513 | 3.363055e-49 | -8.615850e-47 |
| Msa1114030 | Msa1228590 | 0.810463 | 1.138316e-50 | -8.615850e-47 |
| Msa1114030 | Msa1249490 | 0.824546 | 7.613564e-54 | -8.615850e-47 |
| Msa1114030 | Msa1253000 | 0.826903 | 2.100928e-54 | -8.615850e-47 |
| Msa1114030 | Msa1270230 | 0.824453 | 8.004587e-54 | -8.615850e-47 |
| Msa1114030 | Msa1277660 | 0.802521 | 5.392923e-49 | -8.615850e-47 |
| Msa1114030 | Msa1282580 | -0.806078 | 9.795421e-50 | -8.615850e-47 |
| Msa1114030 | Msa1283330 | 0.827813 | 1.271595e-54 | -8.615850e-47 |
| Msa1114030 | Msa1284680 | 0.827202 | 1.782195e-54 | -8.615850e-47 |
| Msa1114030 | Msa1286760 | 0.802577 | 5.252515e-49 | -8.615850e-47 |
| Msa1114030 | Msa1288560 | 0.804148 | 2.482539e-49 | -8.615850e-47 |
| Msa1114030 | Msa1289430 | 0.813175 | 2.923490e-51 | -8.615850e-47 |
| Msa1114030 | Msa1307890 | 0.829581 | 4.751764e-55 | -8.615850e-47 |
| Msa1114030 | Msa1309030 | 0.807748 | 4.343155e-50 | -8.615850e-47 |
| Msa1114030 | Msa1344130 | 0.808408 | 3.143051e-50 | -8.615850e-47 |
| Msa1114030 | Msa1353470 | 0.810365 | 1.195382e-50 | -8.615850e-47 |
| Msa1114030 | Msa1359040 | 0.801407 | 9.137740e-49 | -8.615850e-47 |
| Msa1114030 | Msa1373030 | 0.812205 | 4.767515e-51 | -8.615850e-47 |
| Msa1114030 | Msa1381530 | 0.807831 | 4.171541e-50 | -8.615850e-47 |
| Msa1114030 | Msa1397860 | 0.815202 | 1.042986e-51 | -8.615850e-47 |
| Msa1114030 | Msa1402790 | 0.811238 | 7.736531e-51 | -8.615850e-47 |
| Msa1114030 | Msa1410680 | 0.820022 | 8.544381e-53 | -8.615850e-47 |
| Msa1114030 | Msa1411020 | 0.804264 | 2.348757e-49 | -8.615850e-47 |
| Msa1114030 | Msa1420490 | 0.801301 | 9.606304e-49 | -8.615850e-47 |
| Msa1114030 | Msa1423390 | 0.801468 | 8.875690e-49 | -8.615850e-47 |
| Msa1114030 | Msa1424290 | 0.801564 | 8.482338e-49 | -8.615850e-47 |
| Msa1114030 | Msa1427230 | 0.802773 | 4.785300e-49 | -8.615850e-47 |
| Msa1114030 | Msa1433120 | 0.821198 | 4.586181e-53 | -8.615850e-47 |
| Msa1114030 | Msa1434350 | 0.803018 | 4.259171e-49 | -8.615850e-47 |
| Msa1114030 | Msa1439320 | 0.805450 | 1.327055e-49 | -8.615850e-47 |
| Msa1114030 | Msa1440370 | 0.802567 | 5.275950e-49 | -8.615850e-47 |
| Msa1114030 | Msa1440810 | 0.803025 | 4.243676e-49 | -8.615850e-47 |
| Msa1114030 | Msa1451570 | 0.809230 | 2.097327e-50 | -8.615850e-47 |
| Msa1114030 | Msa1451620 | -0.806796 | 6.913639e-50 | -8.615850e-47 |
| Msa1114030 | Msa1460830 | 0.800177 | 1.628633e-48 | -8.615850e-47 |
| Msa1114030 | Msa1462070 | 0.811157 | 8.055766e-51 | -8.615850e-47 |
| Msa1114030 | Msa1466540 | 0.811569 | 6.555644e-51 | -8.615850e-47 |
| Msa0502340 | Msa1114030 | 0.801684 | 8.014899e-49 | -8.615850e-47 |
| Msa0506270 | Msa1114030 | 0.804884 | 1.743756e-49 | -8.615850e-47 |
| Msa0538600 | Msa1114030 | 0.813026 | 3.152842e-51 | -8.615850e-47 |
| Msa0541130 | Msa1114030 | 0.801778 | 7.668532e-49 | -8.615850e-47 |
| Msa0545700 | Msa1114030 | 0.802861 | 4.588699e-49 | -8.615850e-47 |
| Msa0565350 | Msa1114030 | 0.814176 | 1.760220e-51 | -8.615850e-47 |
| Msa0585230 | Msa1114030 | 0.815047 | 1.129088e-51 | -8.615850e-47 |
| Msa0598780 | Msa1114030 | 0.805083 | 1.584484e-49 | -8.615850e-47 |
| Msa0600700 | Msa1114030 | 0.805385 | 1.369646e-49 | -8.615850e-47 |
| Msa0844490 | Msa1114030 | 0.811145 | 8.103211e-51 | -8.615850e-47 |
| Msa0846330 | Msa1114030 | 0.809736 | 1.632486e-50 | -8.615850e-47 |
| Msa0846350 | Msa1114030 | 0.819433 | 1.164436e-52 | -8.615850e-47 |
| Msa0858980 | Msa1114030 | 0.817209 | 3.712457e-52 | -8.615850e-47 |
| Msa0861130 | Msa1114030 | 0.832965 | 6.993621e-56 | -8.615850e-47 |
| Msa0874320 | Msa1114030 | 0.807888 | 4.056357e-50 | -8.615850e-47 |
| Msa0885280 | Msa1114030 | 0.800280 | 1.552049e-48 | -8.615850e-47 |
| Msa0888370 | Msa1114030 | 0.815568 | 8.648052e-52 | -8.615850e-47 |
| Msa0889850 | Msa1114030 | 0.801655 | 8.128102e-49 | -8.615850e-47 |
| Msa0897330 | Msa1114030 | 0.803180 | 3.942731e-49 | -8.615850e-47 |
| Msa0897880 | Msa1114030 | 0.809818 | 1.567921e-50 | -8.615850e-47 |
| Msa0899450 | Msa1114030 | 0.812403 | 4.315858e-51 | -8.615850e-47 |
| Msa0901790 | Msa1114030 | 0.809679 | 1.679377e-50 | -8.615850e-47 |
| Msa0901930 | Msa1114030 | 0.806200 | 9.233276e-50 | -8.615850e-47 |
| Msa0907260 | Msa1114030 | 0.804316 | 2.290273e-49 | -8.615850e-47 |
| Msa0925250 | Msa1114030 | 0.818116 | 2.318563e-52 | -8.615850e-47 |
| Msa0925290 | Msa1114030 | 0.829981 | 3.796864e-55 | -8.615850e-47 |
| Msa0927290 | Msa1114030 | 0.807634 | 4.592172e-50 | -8.615850e-47 |
| Msa0927380 | Msa1114030 | 0.819563 | 1.087650e-52 | -8.615850e-47 |
| Msa0931520 | Msa1114030 | 0.800745 | 1.248009e-48 | -8.615850e-47 |
| Msa0933100 | Msa1114030 | 0.813434 | 2.564171e-51 | -8.615850e-47 |
| Msa0954910 | Msa1114030 | 0.804055 | 2.595702e-49 | -8.615850e-47 |
| Msa0956270 | Msa1114030 | 0.801217 | 9.992319e-49 | -8.615850e-47 |
| Msa0964900 | Msa1114030 | 0.812411 | 4.297106e-51 | -8.615850e-47 |
| Msa0974070 | Msa1114030 | 0.800146 | 1.652598e-48 | -8.615850e-47 |
| Msa0976670 | Msa1114030 | 0.824498 | 7.814137e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114030 | MtrunA17_Chr3g0131571 | 82.812 | 64 | 2 | 2 | 26 | 80 | 96 | 159 | 8.01e-19 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114030 | AT5G51010.1 | 58.730 | 63 | 17 | 2 | 26 | 79 | 91 | 153 | 2.35e-16 | 68.9 |
Find 16 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCATACATTTCAAACTTAT+CGG | 0.341806 | 7_3:+60640815 | None:intergenic |
| GTGGGAGTTGTAGTTCTTGC+AGG | 0.375454 | 7_3:-60639748 | Msa1114030:CDS |
| ACTCCCACGGCAACTGCAAT+AGG | 0.395621 | 7_3:+60639763 | None:intergenic |
| AATACGTAAGATGTCTGGTT+TGG | 0.398048 | 7_3:-60640882 | None:intergenic |
| ATCAATAGTTTCTTGATCCT+TGG | 0.407175 | 7_3:+60640841 | None:intergenic |
| TTTGTTGACATCTGTTGCAT+AGG | 0.431914 | 7_3:+60639972 | None:intergenic |
| ATTCCAATACGTAAGATGTC+TGG | 0.438510 | 7_3:-60640887 | None:intergenic |
| TAGGGCTCAAACCTTCGTTT+AGG | 0.438783 | 7_3:+60639991 | None:intergenic |
| TTGTTGACATCTGTTGCATA+GGG | 0.445845 | 7_3:+60639973 | None:intergenic |
| TAACTTTATCATATTTGCCA+AGG | 0.528266 | 7_3:-60640858 | Msa1114030:CDS |
| ACTTCCTATTGCAGTTGCCG+TGG | 0.541016 | 7_3:-60639767 | Msa1114030:CDS |
| CTTCCTATTGCAGTTGCCGT+GGG | 0.547663 | 7_3:-60639766 | Msa1114030:CDS |
| ATGTTAGAAAGGCGTTAGAA+AGG | 0.548907 | 7_3:-60639933 | Msa1114030:intron |
| AAATGAAACAGATGTTAGAA+AGG | 0.550334 | 7_3:-60639944 | Msa1114030:CDS |
| TGCAAGAACTACAACTCCCA+CGG | 0.635141 | 7_3:+60639750 | None:intergenic |
| TTTGTGGTGCTCCTAAACGA+AGG | 0.648339 | 7_3:-60640002 | Msa1114030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATTATACTGATAAGAA+AGG | - | chr7_3:60640481-60640500 | Msa1114030:intron | 15.0% |
| !! | TAATATTATACTGATAAGAA+AGG | - | chr7_3:60640481-60640500 | Msa1114030:intron | 15.0% |
| !! | TGGTAAGATATATATTTAGT+TGG | - | chr7_3:60640140-60640159 | Msa1114030:intron | 20.0% |
| !!! | ATATATATTTAGTTGGTTTG+TGG | - | chr7_3:60640147-60640166 | Msa1114030:intron | 20.0% |
| !! | ATATTAGACCTTAATAAACT+TGG | + | chr7_3:60640467-60640486 | None:intergenic | 20.0% |
| !! | ATGTCAAAAACAGAAATAAT+TGG | + | chr7_3:60640772-60640791 | None:intergenic | 20.0% |
| !! | TGGTAAGATATATATTTAGT+TGG | - | chr7_3:60640140-60640159 | Msa1114030:intron | 20.0% |
| !!! | ATATATATTTAGTTGGTTTG+TGG | - | chr7_3:60640147-60640166 | Msa1114030:intron | 20.0% |
| !! | ATATTAGACCTTAATAAACT+TGG | + | chr7_3:60640467-60640486 | None:intergenic | 20.0% |
| !! | ATGTCAAAAACAGAAATAAT+TGG | + | chr7_3:60640772-60640791 | None:intergenic | 20.0% |
| ! | TAACTTTATCATATTTGCCA+AGG | - | chr7_3:60639731-60639750 | Msa1114030:CDS | 25.0% |
| ! | AGCATACATTTCAAACTTAT+CGG | + | chr7_3:60639777-60639796 | None:intergenic | 25.0% |
| ! | TTAATGTGTTACAATAATGC+TGG | - | chr7_3:60639856-60639875 | Msa1114030:intron | 25.0% |
| ! | AAAATGTATTGCCTAAATTG+TGG | + | chr7_3:60640351-60640370 | None:intergenic | 25.0% |
| ! | TTAGAGTTTCGATAAAATCA+TGG | - | chr7_3:60640369-60640388 | Msa1114030:intron | 25.0% |
| ! | TTTCTCTACCAAGTTTATTA+AGG | - | chr7_3:60640456-60640475 | Msa1114030:intron | 25.0% |
| ! | TACTGATAAGAAAGGAAAAA+TGG | - | chr7_3:60640489-60640508 | Msa1114030:intron | 25.0% |
| ! | ACTGATAAGAAAGGAAAAAT+GGG | - | chr7_3:60640490-60640509 | Msa1114030:intron | 25.0% |
| ! | TTGTAAGAAGCAAAAGAAAT+AGG | - | chr7_3:60640518-60640537 | Msa1114030:intron | 25.0% |
| ! | TGTAAGAAGCAAAAGAAATA+GGG | - | chr7_3:60640519-60640538 | Msa1114030:intron | 25.0% |
| ! | AAATGAAACAGATGTTAGAA+AGG | - | chr7_3:60640645-60640664 | Msa1114030:intron | 25.0% |
| !!! | TTTATTATGCTGATTTCAAC+AGG | - | chr7_3:60640794-60640813 | Msa1114030:intron | 25.0% |
| ! | TAACTTTATCATATTTGCCA+AGG | - | chr7_3:60639731-60639750 | Msa1114030:CDS | 25.0% |
| ! | AGCATACATTTCAAACTTAT+CGG | + | chr7_3:60639777-60639796 | None:intergenic | 25.0% |
| ! | TTAATGTGTTACAATAATGC+TGG | - | chr7_3:60639856-60639875 | Msa1114030:intron | 25.0% |
| ! | AAAATGTATTGCCTAAATTG+TGG | + | chr7_3:60640351-60640370 | None:intergenic | 25.0% |
| ! | TTAGAGTTTCGATAAAATCA+TGG | - | chr7_3:60640369-60640388 | Msa1114030:intron | 25.0% |
| ! | TTTCTCTACCAAGTTTATTA+AGG | - | chr7_3:60640456-60640475 | Msa1114030:intron | 25.0% |
| ! | TACTGATAAGAAAGGAAAAA+TGG | - | chr7_3:60640489-60640508 | Msa1114030:intron | 25.0% |
| ! | ACTGATAAGAAAGGAAAAAT+GGG | - | chr7_3:60640490-60640509 | Msa1114030:intron | 25.0% |
| ! | TTGTAAGAAGCAAAAGAAAT+AGG | - | chr7_3:60640518-60640537 | Msa1114030:intron | 25.0% |
| ! | TGTAAGAAGCAAAAGAAATA+GGG | - | chr7_3:60640519-60640538 | Msa1114030:intron | 25.0% |
| ! | AAATGAAACAGATGTTAGAA+AGG | - | chr7_3:60640645-60640664 | Msa1114030:intron | 25.0% |
| !!! | TTTATTATGCTGATTTCAAC+AGG | - | chr7_3:60640794-60640813 | Msa1114030:intron | 25.0% |
| ATCAATAGTTTCTTGATCCT+TGG | + | chr7_3:60639751-60639770 | None:intergenic | 30.0% | |
| CTCAATTTCATCAAGTCATT+AGG | + | chr7_3:60639904-60639923 | None:intergenic | 30.0% | |
| ! | ATTAACTGTCATGGATTACT+TGG | - | chr7_3:60640238-60640257 | Msa1114030:intron | 30.0% |
| ! | TTAACTGTCATGGATTACTT+GGG | - | chr7_3:60640239-60640258 | Msa1114030:intron | 30.0% |
| TCAAATTCTAAGTGCATGTT+AGG | - | chr7_3:60640282-60640301 | Msa1114030:intron | 30.0% | |
| CACAATTGTTACCACAATTT+AGG | - | chr7_3:60640337-60640356 | Msa1114030:intron | 30.0% | |
| TCACTACCAATCATAAAGAT+TGG | - | chr7_3:60640424-60640443 | Msa1114030:intron | 30.0% | |
| ATGAGACCAATCTTTATGAT+TGG | + | chr7_3:60640433-60640452 | None:intergenic | 30.0% | |
| GTAAGAAGCAAAAGAAATAG+GGG | - | chr7_3:60640520-60640539 | Msa1114030:intron | 30.0% | |
| GCATTATGATTGTCTGAAAA+TGG | - | chr7_3:60640554-60640573 | Msa1114030:intron | 30.0% | |
| ATGCAAAAAGAAAACGACTA+TGG | + | chr7_3:60640728-60640747 | None:intergenic | 30.0% | |
| ATCAATAGTTTCTTGATCCT+TGG | + | chr7_3:60639751-60639770 | None:intergenic | 30.0% | |
| CTCAATTTCATCAAGTCATT+AGG | + | chr7_3:60639904-60639923 | None:intergenic | 30.0% | |
| ! | ATTAACTGTCATGGATTACT+TGG | - | chr7_3:60640238-60640257 | Msa1114030:intron | 30.0% |
| ! | TTAACTGTCATGGATTACTT+GGG | - | chr7_3:60640239-60640258 | Msa1114030:intron | 30.0% |
| TCAAATTCTAAGTGCATGTT+AGG | - | chr7_3:60640282-60640301 | Msa1114030:intron | 30.0% | |
| CACAATTGTTACCACAATTT+AGG | - | chr7_3:60640337-60640356 | Msa1114030:intron | 30.0% | |
| TCACTACCAATCATAAAGAT+TGG | - | chr7_3:60640424-60640443 | Msa1114030:intron | 30.0% | |
| ATGAGACCAATCTTTATGAT+TGG | + | chr7_3:60640433-60640452 | None:intergenic | 30.0% | |
| GTAAGAAGCAAAAGAAATAG+GGG | - | chr7_3:60640520-60640539 | Msa1114030:intron | 30.0% | |
| GCATTATGATTGTCTGAAAA+TGG | - | chr7_3:60640554-60640573 | Msa1114030:intron | 30.0% | |
| ATGCAAAAAGAAAACGACTA+TGG | + | chr7_3:60640728-60640747 | None:intergenic | 30.0% | |
| ATGTGTTACAATAATGCTGG+TGG | - | chr7_3:60639859-60639878 | Msa1114030:intron | 35.0% | |
| TGTGTTACAATAATGCTGGT+GGG | - | chr7_3:60639860-60639879 | Msa1114030:intron | 35.0% | |
| GAAATTGAGAACATTTCACG+TGG | - | chr7_3:60639915-60639934 | Msa1114030:intron | 35.0% | |
| !!! | TCTGTTTCTATGCCGTTTTA+TGG | - | chr7_3:60639981-60640000 | Msa1114030:CDS | 35.0% |
| ATTGTGTGGTGAAACTTTGT+GGG | + | chr7_3:60640079-60640098 | None:intergenic | 35.0% | |
| AATTGTGTGGTGAAACTTTG+TGG | + | chr7_3:60640080-60640099 | None:intergenic | 35.0% | |
| GTTTCACCACACAATTGTTA+AGG | - | chr7_3:60640084-60640103 | Msa1114030:intron | 35.0% | |
| TCAACTCCTTAACAATTGTG+TGG | + | chr7_3:60640093-60640112 | None:intergenic | 35.0% | |
| !!! | TGATGTGGTTTTTGGCAATT+TGG | - | chr7_3:60640120-60640139 | Msa1114030:intron | 35.0% |
| CGAAACAGAATTAACTGTCA+TGG | - | chr7_3:60640229-60640248 | Msa1114030:intron | 35.0% | |
| GTTAGGTTCAGTGAATTTGA+TGG | - | chr7_3:60640299-60640318 | Msa1114030:intron | 35.0% | |
| !! | CTCTTAAGTTCTGAATTTGG+TGG | + | chr7_3:60640397-60640416 | None:intergenic | 35.0% |
| !! | CTGCTCTTAAGTTCTGAATT+TGG | + | chr7_3:60640400-60640419 | None:intergenic | 35.0% |
| ! | AAATGGTGTTTTGCAGTTTG+TGG | - | chr7_3:60640571-60640590 | Msa1114030:intron | 35.0% |
| TTGTTGACATCTGTTGCATA+GGG | + | chr7_3:60640619-60640638 | None:intergenic | 35.0% | |
| TTTGTTGACATCTGTTGCAT+AGG | + | chr7_3:60640620-60640639 | None:intergenic | 35.0% | |
| !! | ATGTTAGAAAGGCGTTAGAA+AGG | - | chr7_3:60640656-60640675 | Msa1114030:intron | 35.0% |
| ATGTGTTACAATAATGCTGG+TGG | - | chr7_3:60639859-60639878 | Msa1114030:intron | 35.0% | |
| TGTGTTACAATAATGCTGGT+GGG | - | chr7_3:60639860-60639879 | Msa1114030:intron | 35.0% | |
| GAAATTGAGAACATTTCACG+TGG | - | chr7_3:60639915-60639934 | Msa1114030:intron | 35.0% | |
| !!! | TCTGTTTCTATGCCGTTTTA+TGG | - | chr7_3:60639981-60640000 | Msa1114030:CDS | 35.0% |
| ATTGTGTGGTGAAACTTTGT+GGG | + | chr7_3:60640079-60640098 | None:intergenic | 35.0% | |
| AATTGTGTGGTGAAACTTTG+TGG | + | chr7_3:60640080-60640099 | None:intergenic | 35.0% | |
| GTTTCACCACACAATTGTTA+AGG | - | chr7_3:60640084-60640103 | Msa1114030:intron | 35.0% | |
| TCAACTCCTTAACAATTGTG+TGG | + | chr7_3:60640093-60640112 | None:intergenic | 35.0% | |
| !!! | TGATGTGGTTTTTGGCAATT+TGG | - | chr7_3:60640120-60640139 | Msa1114030:intron | 35.0% |
| CGAAACAGAATTAACTGTCA+TGG | - | chr7_3:60640229-60640248 | Msa1114030:intron | 35.0% | |
| GTTAGGTTCAGTGAATTTGA+TGG | - | chr7_3:60640299-60640318 | Msa1114030:intron | 35.0% | |
| !! | CTCTTAAGTTCTGAATTTGG+TGG | + | chr7_3:60640397-60640416 | None:intergenic | 35.0% |
| !! | CTGCTCTTAAGTTCTGAATT+TGG | + | chr7_3:60640400-60640419 | None:intergenic | 35.0% |
| ! | AAATGGTGTTTTGCAGTTTG+TGG | - | chr7_3:60640571-60640590 | Msa1114030:intron | 35.0% |
| TTGTTGACATCTGTTGCATA+GGG | + | chr7_3:60640619-60640638 | None:intergenic | 35.0% | |
| TTTGTTGACATCTGTTGCAT+AGG | + | chr7_3:60640620-60640639 | None:intergenic | 35.0% | |
| !! | ATGTTAGAAAGGCGTTAGAA+AGG | - | chr7_3:60640656-60640675 | Msa1114030:intron | 35.0% |
| GTGTTACAATAATGCTGGTG+GGG | - | chr7_3:60639861-60639880 | Msa1114030:intron | 40.0% | |
| GTGCTGCAAAAGCCATAAAA+CGG | + | chr7_3:60639996-60640015 | None:intergenic | 40.0% | |
| !! | AAGAGAGTAGAAGCACCATT+TGG | + | chr7_3:60640052-60640071 | None:intergenic | 40.0% |
| ! | ACAACCTCTGATGTGGTTTT+TGG | - | chr7_3:60640112-60640131 | Msa1114030:intron | 40.0% |
| ATTGCCAAAAACCACATCAG+AGG | + | chr7_3:60640119-60640138 | None:intergenic | 40.0% | |
| ATGTCTTTCAGAAGCTGTCT+TGG | - | chr7_3:60640173-60640192 | Msa1114030:intron | 40.0% | |
| TTTCAGAAGCTGTCTTGGTT+TGG | - | chr7_3:60640178-60640197 | Msa1114030:intron | 40.0% | |
| GTTAATTCTGTTTCGTCAGC+AGG | + | chr7_3:60640224-60640243 | None:intergenic | 40.0% | |
| TCCAAAGAGATGAAGCAACT+GGG | - | chr7_3:60640694-60640713 | Msa1114030:intron | 40.0% | |
| GTGTTACAATAATGCTGGTG+GGG | - | chr7_3:60639861-60639880 | Msa1114030:intron | 40.0% | |
| GTGCTGCAAAAGCCATAAAA+CGG | + | chr7_3:60639996-60640015 | None:intergenic | 40.0% | |
| !! | AAGAGAGTAGAAGCACCATT+TGG | + | chr7_3:60640052-60640071 | None:intergenic | 40.0% |
| ! | ACAACCTCTGATGTGGTTTT+TGG | - | chr7_3:60640112-60640131 | Msa1114030:intron | 40.0% |
| ATTGCCAAAAACCACATCAG+AGG | + | chr7_3:60640119-60640138 | None:intergenic | 40.0% | |
| ATGTCTTTCAGAAGCTGTCT+TGG | - | chr7_3:60640173-60640192 | Msa1114030:intron | 40.0% | |
| TTTCAGAAGCTGTCTTGGTT+TGG | - | chr7_3:60640178-60640197 | Msa1114030:intron | 40.0% | |
| GTTAATTCTGTTTCGTCAGC+AGG | + | chr7_3:60640224-60640243 | None:intergenic | 40.0% | |
| TCCAAAGAGATGAAGCAACT+GGG | - | chr7_3:60640694-60640713 | Msa1114030:intron | 40.0% | |
| TTTGTGGTGCTCCTAAACGA+AGG | - | chr7_3:60640587-60640606 | Msa1114030:intron | 45.0% | |
| TAGGGCTCAAACCTTCGTTT+AGG | + | chr7_3:60640601-60640620 | None:intergenic | 45.0% | |
| CTCCAAAGAGATGAAGCAAC+TGG | - | chr7_3:60640693-60640712 | Msa1114030:intron | 45.0% | |
| ACCCAGTTGCTTCATCTCTT+TGG | + | chr7_3:60640698-60640717 | None:intergenic | 45.0% | |
| TGCAAGAACTACAACTCCCA+CGG | + | chr7_3:60640842-60640861 | None:intergenic | 45.0% | |
| TTTGTGGTGCTCCTAAACGA+AGG | - | chr7_3:60640587-60640606 | Msa1114030:intron | 45.0% | |
| TAGGGCTCAAACCTTCGTTT+AGG | + | chr7_3:60640601-60640620 | None:intergenic | 45.0% | |
| CTCCAAAGAGATGAAGCAAC+TGG | - | chr7_3:60640693-60640712 | Msa1114030:intron | 45.0% | |
| ACCCAGTTGCTTCATCTCTT+TGG | + | chr7_3:60640698-60640717 | None:intergenic | 45.0% | |
| TGCAAGAACTACAACTCCCA+CGG | + | chr7_3:60640842-60640861 | None:intergenic | 45.0% | |
| TGCTGGTGGGGTTGTAAACA+AGG | - | chr7_3:60639873-60639892 | Msa1114030:intron | 50.0% | |
| ATTTGGACTGCTGGAGCAGT+CGG | + | chr7_3:60640035-60640054 | None:intergenic | 50.0% | |
| !! | AGAAGCACCATTTGGACTGC+TGG | + | chr7_3:60640044-60640063 | None:intergenic | 50.0% |
| GGAGTTGACAACCTCTGATG+TGG | - | chr7_3:60640105-60640124 | Msa1114030:intron | 50.0% | |
| ACTTCCTATTGCAGTTGCCG+TGG | - | chr7_3:60640822-60640841 | Msa1114030:CDS | 50.0% | |
| CTTCCTATTGCAGTTGCCGT+GGG | - | chr7_3:60640823-60640842 | Msa1114030:CDS | 50.0% | |
| GTGGGAGTTGTAGTTCTTGC+AGG | - | chr7_3:60640841-60640860 | Msa1114030:CDS | 50.0% | |
| TGCTGGTGGGGTTGTAAACA+AGG | - | chr7_3:60639873-60639892 | Msa1114030:intron | 50.0% | |
| ATTTGGACTGCTGGAGCAGT+CGG | + | chr7_3:60640035-60640054 | None:intergenic | 50.0% | |
| !! | AGAAGCACCATTTGGACTGC+TGG | + | chr7_3:60640044-60640063 | None:intergenic | 50.0% |
| GGAGTTGACAACCTCTGATG+TGG | - | chr7_3:60640105-60640124 | Msa1114030:intron | 50.0% | |
| ACTTCCTATTGCAGTTGCCG+TGG | - | chr7_3:60640822-60640841 | Msa1114030:CDS | 50.0% | |
| CTTCCTATTGCAGTTGCCGT+GGG | - | chr7_3:60640823-60640842 | Msa1114030:CDS | 50.0% | |
| GTGGGAGTTGTAGTTCTTGC+AGG | - | chr7_3:60640841-60640860 | Msa1114030:CDS | 50.0% | |
| GACTGCTCCAGCAGTCCAAA+TGG | - | chr7_3:60640034-60640053 | Msa1114030:intron | 55.0% | |
| ACTCCCACGGCAACTGCAAT+AGG | + | chr7_3:60640829-60640848 | None:intergenic | 55.0% | |
| GACTGCTCCAGCAGTCCAAA+TGG | - | chr7_3:60640034-60640053 | Msa1114030:intron | 55.0% | |
| ACTCCCACGGCAACTGCAAT+AGG | + | chr7_3:60640829-60640848 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 60639717 | 60640894 | 60639717 | ID=Msa1114030;Name=Msa1114030 |
| chr7_3 | mRNA | 60639717 | 60640894 | 60639717 | ID=Msa1114030-mRNA-1;Parent=Msa1114030;Name=Msa1114030-mRNA-1;_AED=0.54;_eAED=0.85;_QI=0|0|0|0.66|0.5|0.66|3|0|80 |
| chr7_3 | exon | 60640822 | 60640894 | 60640822 | ID=Msa1114030-mRNA-1:exon:13712;Parent=Msa1114030-mRNA-1 |
| chr7_3 | exon | 60639934 | 60640024 | 60639934 | ID=Msa1114030-mRNA-1:exon:13711;Parent=Msa1114030-mRNA-1 |
| chr7_3 | exon | 60639717 | 60639795 | 60639717 | ID=Msa1114030-mRNA-1:exon:13710;Parent=Msa1114030-mRNA-1 |
| chr7_3 | CDS | 60640822 | 60640894 | 60640822 | ID=Msa1114030-mRNA-1:cds;Parent=Msa1114030-mRNA-1 |
| chr7_3 | CDS | 60639934 | 60640024 | 60639934 | ID=Msa1114030-mRNA-1:cds;Parent=Msa1114030-mRNA-1 |
| chr7_3 | CDS | 60639717 | 60639795 | 60639717 | ID=Msa1114030-mRNA-1:cds;Parent=Msa1114030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
