Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901890 | XP_013442684.1 | 92.870 | 575 | 25 | 2 | 1 | 560 | 1 | 574 | 0.0 | 1056 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901890 | sp|Q8L6Z7|EXO1_ARATH | 43.804 | 347 | 181 | 5 | 1 | 347 | 1 | 333 | 9.66e-92 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901890 | A0A072TGL8 | 92.870 | 575 | 25 | 2 | 1 | 560 | 1 | 574 | 0.0 | 1056 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0901890 | Msa0923830 | 0.900571 | 6.415434e-78 | -8.615850e-47 |
| Msa0901890 | Msa0962890 | 0.813841 | 2.087002e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901890 | MtrunA17_Chr6g0482931 | 92.870 | 575 | 25 | 2 | 1 | 560 | 1 | 574 | 0.0 | 1056 |
| Msa0901890 | MtrunA17_Chr8g0380081 | 43.210 | 324 | 170 | 5 | 1 | 324 | 1 | 310 | 1.89e-89 | 278 |
| Msa0901890 | MtrunA17_Chr1g0193411 | 24.786 | 351 | 235 | 11 | 1 | 338 | 1 | 335 | 2.23e-15 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901890 | AT1G18090.1 | 57.265 | 468 | 179 | 5 | 1 | 452 | 1 | 463 | 0.0 | 540 |
| Msa0901890 | AT1G18090.2 | 57.051 | 468 | 180 | 5 | 1 | 452 | 1 | 463 | 0.0 | 539 |
| Msa0901890 | AT1G29630.2 | 43.804 | 347 | 181 | 5 | 1 | 347 | 1 | 333 | 9.82e-93 | 300 |
| Msa0901890 | AT1G29630.1 | 48.947 | 190 | 90 | 2 | 1 | 190 | 1 | 183 | 1.34e-51 | 187 |
| Msa0901890 | AT1G29630.3 | 40.113 | 177 | 99 | 3 | 171 | 347 | 10 | 179 | 4.49e-36 | 142 |
| Msa0901890 | AT5G26680.2 | 25.602 | 332 | 222 | 12 | 1 | 321 | 1 | 318 | 6.01e-15 | 77.4 |
| Msa0901890 | AT5G26680.1 | 25.602 | 332 | 222 | 12 | 1 | 321 | 1 | 318 | 1.40e-14 | 76.6 |
| Msa0901890 | AT5G26680.5 | 25.602 | 332 | 222 | 12 | 1 | 321 | 1 | 318 | 2.44e-14 | 75.9 |
| Msa0901890 | AT5G26680.4 | 25.602 | 332 | 222 | 12 | 1 | 321 | 1 | 318 | 2.44e-14 | 75.9 |
| Msa0901890 | AT5G26680.3 | 25.602 | 332 | 222 | 12 | 1 | 321 | 1 | 318 | 2.44e-14 | 75.9 |
Find 89 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGCTTCAGAACTCTTTC+AGG | 0.171774 | 6_1:-98924280 | Msa0901890:intron |
| CCAATTAACTTTCAAGAAAA+AGG | 0.183419 | 6_1:-98920882 | Msa0901890:CDS |
| CTTCCATCTGTTCCTGGAAT+TGG | 0.223676 | 6_1:-98923039 | Msa0901890:CDS |
| AAACAATTATCCTGTTTAAA+TGG | 0.234005 | 6_1:+98921832 | None:intergenic |
| CTTCATGTGCTTGAGCTCTT+TGG | 0.248708 | 6_1:+98922462 | None:intergenic |
| GTCACTGATGAACAGGTTTC+AGG | 0.261774 | 6_1:-98920801 | Msa0901890:CDS |
| TGAGTTTCATCAAATGTAAA+TGG | 0.262758 | 6_1:+98921044 | None:intergenic |
| ACACGAGGAGGAAATAAATT+TGG | 0.270972 | 6_1:-98920982 | Msa0901890:CDS |
| TGATGCTTTATGCTTGAATA+TGG | 0.271831 | 6_1:-98920757 | Msa0901890:CDS |
| AAAGAAATCCAAGAAGAAAA+AGG | 0.282205 | 6_1:-98920667 | Msa0901890:CDS |
| TCCAACCTTGAAACTGAAAA+AGG | 0.300940 | 6_1:-98923581 | Msa0901890:CDS |
| TTTAGCTTATTCGTGTAGTA+TGG | 0.302754 | 6_1:-98924614 | Msa0901890:intron |
| GCATATTCATGGCTTCATAA+AGG | 0.327393 | 6_1:-98926048 | Msa0901890:CDS |
| CTGAAGTGCCGTTACTTCAT+TGG | 0.329550 | 6_1:+98921109 | None:intergenic |
| TCAAAGGCTTCCTTAGTTGA+TGG | 0.343464 | 6_1:+98921937 | None:intergenic |
| GAAGGATTTGGCATAATCTT+CGG | 0.358784 | 6_1:+98922620 | None:intergenic |
| ATCCGAAAAGGATTATTGTT+AGG | 0.361413 | 6_1:+98921011 | None:intergenic |
| AAGGATTTGGCATAATCTTC+GGG | 0.365199 | 6_1:+98922621 | None:intergenic |
| CATATTCATGGCTTCATAAA+GGG | 0.367960 | 6_1:-98926047 | Msa0901890:CDS |
| AAGTGCATCCTTGAAGGATT+TGG | 0.375301 | 6_1:+98922608 | None:intergenic |
| CAAGCACATGAAGCCTCTTC+CGG | 0.378622 | 6_1:-98922452 | Msa0901890:CDS |
| TATGGCTCATAAGCTAATTC+AGG | 0.388193 | 6_1:-98923778 | Msa0901890:intron |
| GCGTAGTTCTTGATATGAAT+TGG | 0.392195 | 6_1:+98926207 | None:intergenic |
| AAATGAAGGTTTACAAGATT+CGG | 0.392719 | 6_1:+98923326 | None:intergenic |
| AGTGACTCAAGAAAACTTTC+CGG | 0.394862 | 6_1:+98922433 | None:intergenic |
| AATAAATTTGGTTCAGAAAG+AGG | 0.396492 | 6_1:-98920970 | Msa0901890:CDS |
| AAACCTACGAACATTGCAAA+TGG | 0.398614 | 6_1:-98926271 | Msa0901890:exon |
| ATATCGAAACTTTGAAATGA+AGG | 0.404770 | 6_1:+98923312 | None:intergenic |
| TTCTTTCGCCATTCCCGTCA+CGG | 0.413869 | 6_1:+98923373 | None:intergenic |
| AACTGAGCATCTGCTTCATA+TGG | 0.416714 | 6_1:+98923614 | None:intergenic |
| ATTGTTTCATTTGTTTCCAA+TGG | 0.417616 | 6_1:+98921074 | None:intergenic |
| TCCTGAGTTGACCAATGGTA+TGG | 0.418566 | 6_1:+98921872 | None:intergenic |
| CCAATGGTATGGGGATCAAT+GGG | 0.419906 | 6_1:+98921883 | None:intergenic |
| ATTTGATGAAACTCATTTGA+AGG | 0.420604 | 6_1:-98921036 | Msa0901890:CDS |
| AGTAGAAGTCACTGATGAAC+AGG | 0.422610 | 6_1:-98920808 | Msa0901890:CDS |
| ACCAATGGTATGGGGATCAA+TGG | 0.429092 | 6_1:+98921882 | None:intergenic |
| TACAACAAACTCAATGTTCT+CGG | 0.429534 | 6_1:+98923640 | None:intergenic |
| TTCTCAGTTGCTGCTTTGCA+AGG | 0.434081 | 6_1:+98924469 | None:intergenic |
| AGTTCCTACACCATTTAAAC+AGG | 0.439072 | 6_1:-98921842 | Msa0901890:CDS |
| TGGGTATTGATGCATATTCA+TGG | 0.440605 | 6_1:-98926059 | Msa0901890:CDS |
| TGGGGATCAATGGGGTGTAA+AGG | 0.443266 | 6_1:+98921892 | None:intergenic |
| AACAGCAAGTGCATCCTTGA+AGG | 0.446780 | 6_1:+98922602 | None:intergenic |
| ATATGAATTGGTTCAACGTA+AGG | 0.447887 | 6_1:+98926219 | None:intergenic |
| TCAAGAAAACTTTCCGGAAG+AGG | 0.455673 | 6_1:+98922439 | None:intergenic |
| AGTGAATATTACTCCCGTTA+TGG | 0.456097 | 6_1:-98923796 | Msa0901890:CDS |
| AAAGTGTAAAGTCTAAGATT+AGG | 0.464099 | 6_1:-98920725 | Msa0901890:CDS |
| GCTCGAGCAACACCAATTCC+AGG | 0.467358 | 6_1:+98923027 | None:intergenic |
| TATTCCGATACTTCAAAACT+AGG | 0.469117 | 6_1:+98922998 | None:intergenic |
| TGCATAGAGTGAATCTGCTT+CGG | 0.473122 | 6_1:-98924537 | Msa0901890:CDS |
| CTATAAGTCTCTCAAAGAAA+AGG | 0.481150 | 6_1:-98920857 | Msa0901890:CDS |
| CCTGAGTTGACCAATGGTAT+GGG | 0.491119 | 6_1:+98921873 | None:intergenic |
| AAACTTGAATCCATCAACTA+AGG | 0.492672 | 6_1:-98921947 | Msa0901890:CDS |
| TCTGTTCTTAAGCTTGAGAA+AGG | 0.495968 | 6_1:-98922654 | Msa0901890:CDS |
| ATTGCTTTGACTATAGTTGA+GGG | 0.500256 | 6_1:+98921979 | None:intergenic |
| AACCTACGAACATTGCAAAT+GGG | 0.502158 | 6_1:-98926270 | Msa0901890:exon |
| TCAGAAACTGATCATGCCAT+TGG | 0.517797 | 6_1:-98921090 | Msa0901890:CDS |
| CGAAAGAATAGAGTTAGAGA+AGG | 0.520110 | 6_1:-98923358 | Msa0901890:CDS |
| GCAATGGCTAAGCTCAAAGA+AGG | 0.521067 | 6_1:-98924312 | Msa0901890:CDS |
| ATTAGCTTATGAGCCATAAC+GGG | 0.524793 | 6_1:+98923783 | None:intergenic |
| TATTGCTTTGACTATAGTTG+AGG | 0.533953 | 6_1:+98921978 | None:intergenic |
| AGATTATGCCAAATCCTTCA+AGG | 0.535204 | 6_1:-98922616 | Msa0901890:CDS |
| GTCTTGATTCTGATAGTGAA+AGG | 0.537551 | 6_1:-98924585 | Msa0901890:CDS |
| AATTAGCTTATGAGCCATAA+CGG | 0.541559 | 6_1:+98923782 | None:intergenic |
| AGGAATAGTGCTGATTTGAA+AGG | 0.545431 | 6_1:-98920705 | Msa0901890:CDS |
| AAGATGGACCGTGACGGGAA+TGG | 0.545823 | 6_1:-98923381 | Msa0901890:CDS |
| CCCATTGATCCCCATACCAT+TGG | 0.554789 | 6_1:-98921883 | Msa0901890:CDS |
| GATAGTGATCTGTTAACGTA+TGG | 0.564904 | 6_1:-98923533 | Msa0901890:CDS |
| AGTGCTGATTTGAAAGGAAG+TGG | 0.566470 | 6_1:-98920699 | Msa0901890:CDS |
| CCCATACCATTGGTCAACTC+AGG | 0.567256 | 6_1:-98921873 | Msa0901890:CDS |
| AGAACATTCAGATTTATCAA+AGG | 0.570621 | 6_1:+98921921 | None:intergenic |
| TAAGTATTCCAATGAAGTAA+CGG | 0.577244 | 6_1:-98921117 | Msa0901890:CDS |
| ACACCAATTCCAGGAACAGA+TGG | 0.577825 | 6_1:+98923036 | None:intergenic |
| CTGAGTTGACCAATGGTATG+GGG | 0.582491 | 6_1:+98921874 | None:intergenic |
| ATTCATATCAAGAACTACGC+TGG | 0.588166 | 6_1:-98926204 | Msa0901890:CDS |
| TCTCTTTATCTGCAGTGACA+AGG | 0.588984 | 6_1:-98921154 | Msa0901890:intron |
| TTATCCTGTTTAAATGGTGT+AGG | 0.591556 | 6_1:+98921838 | None:intergenic |
| ATAGTCAAAGCAATAGCTGA+AGG | 0.594326 | 6_1:-98921970 | Msa0901890:CDS |
| ATTCCGATACTTCAAAACTA+GGG | 0.596042 | 6_1:+98922999 | None:intergenic |
| TTCCCATTTGCAATGTTCGT+AGG | 0.598469 | 6_1:+98926268 | None:intergenic |
| AAGCAGCAACTGAGAAAGAG+AGG | 0.604690 | 6_1:-98924462 | Msa0901890:CDS |
| GGTTCAGAAAGAGGAAACAA+TGG | 0.605526 | 6_1:-98920961 | Msa0901890:CDS |
| ATATTCATGGCTTCATAAAG+GGG | 0.632304 | 6_1:-98926046 | Msa0901890:CDS |
| CTGATAGTGAAAGGAAATTG+CGG | 0.646657 | 6_1:-98924576 | Msa0901890:CDS |
| GGTTTCAGGAGTGACTGAAG+AGG | 0.675664 | 6_1:-98920787 | Msa0901890:CDS |
| TCGGATAAGAAAACACGAGG+AGG | 0.676541 | 6_1:-98920994 | Msa0901890:CDS |
| CAATGGCTAAGCTCAAAGAA+GGG | 0.677217 | 6_1:-98924311 | Msa0901890:CDS |
| GCTGATTTGAAAGGAAGTGG+TGG | 0.680618 | 6_1:-98920696 | Msa0901890:CDS |
| CAATGGTATGGGGATCAATG+GGG | 0.687422 | 6_1:+98921884 | None:intergenic |
| TATTCATGGCTTCATAAAGG+GGG | 0.697515 | 6_1:-98926045 | Msa0901890:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATATATATGTGATAAT+AGG | + | chr6_1:98924162-98924181 | None:intergenic | 10.0% |
| !! | TAAAACTAATTACATATATA+AGG | + | chr6_1:98924857-98924876 | None:intergenic | 10.0% |
| !!! | AATATTTATGGTGATATTTT+AGG | - | chr6_1:98921156-98921175 | Msa0901890:intron | 15.0% |
| !! | TAGAAATAAATCTTAAAAGT+AGG | - | chr6_1:98921252-98921271 | Msa0901890:intron | 15.0% |
| !!! | ATTTAATTTATATACACTGA+CGG | - | chr6_1:98921275-98921294 | Msa0901890:intron | 15.0% |
| !!! | AATATTTATGGAGATATTTT+AGG | - | chr6_1:98921343-98921362 | Msa0901890:intron | 15.0% |
| !! | AAAAAACAATGGTTATTTAT+GGG | - | chr6_1:98922694-98922713 | Msa0901890:intron | 15.0% |
| !!! | TGTTTTTATAACAAAAGATA+AGG | - | chr6_1:98922894-98922913 | Msa0901890:intron | 15.0% |
| !! | CTTATATATAATCACTTAAA+CGG | + | chr6_1:98924630-98924649 | None:intergenic | 15.0% |
| !!! | TTTTAATTCATCTTTTGAAA+TGG | + | chr6_1:98924659-98924678 | None:intergenic | 15.0% |
| !!! | ACAATTTTTATTGATATTCT+GGG | + | chr6_1:98925126-98925145 | None:intergenic | 15.0% |
| !!! | TACAATTTTTATTGATATTC+TGG | + | chr6_1:98925127-98925146 | None:intergenic | 15.0% |
| !! | AATATCAATAAAAATTGTAC+AGG | - | chr6_1:98925128-98925147 | Msa0901890:intron | 15.0% |
| !! | GTAAAAATCAAAACTTTGAA+TGG | + | chr6_1:98920765-98920784 | None:intergenic | 20.0% |
| !!! | TTTTTACTCAAAATTTCATC+TGG | - | chr6_1:98920778-98920797 | Msa0901890:CDS | 20.0% |
| !!! | TTTTACTCAAAATTTCATCT+GGG | - | chr6_1:98920779-98920798 | Msa0901890:CDS | 20.0% |
| !! | ATTCATATTGAAAAATCTTC+AGG | - | chr6_1:98920836-98920855 | Msa0901890:CDS | 20.0% |
| !! | TTCTATCAAGATTTGTAATA+TGG | + | chr6_1:98921048-98921067 | None:intergenic | 20.0% |
| !!! | ATTTAATTTATATACACCGA+CGG | - | chr6_1:98921088-98921107 | Msa0901890:CDS | 20.0% |
| !! | TCATGCATTGTAAATATTTA+TGG | - | chr6_1:98921144-98921163 | Msa0901890:intron | 20.0% |
| !!! | CATTGTAATGTGATTTTATT+GGG | - | chr6_1:98921196-98921215 | Msa0901890:intron | 20.0% |
| !! | TATCTCCATAAATATTTACA+AGG | + | chr6_1:98921339-98921358 | None:intergenic | 20.0% |
| !! | ATTATAACTAAGTGTATGTT+TGG | - | chr6_1:98921549-98921568 | Msa0901890:intron | 20.0% |
| !! | AATGAAAAGTGATTTATGTT+TGG | - | chr6_1:98921628-98921647 | Msa0901890:intron | 20.0% |
| !!! | AGAATTGATTTTAAGATGTT+TGG | + | chr6_1:98921783-98921802 | None:intergenic | 20.0% |
| !! | TAAACAAACTGAATGTTATT+TGG | - | chr6_1:98921979-98921998 | Msa0901890:CDS | 20.0% |
| !!! | AATTGCTTATAATTGCTTTT+TGG | - | chr6_1:98922193-98922212 | Msa0901890:intron | 20.0% |
| !! | TTTATGATGTTTGTTTGATT+TGG | - | chr6_1:98922549-98922568 | Msa0901890:intron | 20.0% |
| !!! | AACATTTTTCAGTTTTGAAA+TGG | - | chr6_1:98922666-98922685 | Msa0901890:intron | 20.0% |
| !! | GAAAAAACAATGGTTATTTA+TGG | - | chr6_1:98922693-98922712 | Msa0901890:intron | 20.0% |
| !! | AAAAACAATGGTTATTTATG+GGG | - | chr6_1:98922695-98922714 | Msa0901890:intron | 20.0% |
| !! | TAATTATTCTAGTAAAACCT+AGG | + | chr6_1:98922757-98922776 | None:intergenic | 20.0% |
| !! | TCAAAAGAAAGTAAAGAATA+AGG | - | chr6_1:98922784-98922803 | Msa0901890:intron | 20.0% |
| !!! | ATGCCAATTTTATACTTTTT+TGG | - | chr6_1:98922818-98922837 | Msa0901890:intron | 20.0% |
| !!! | TGACCAAAAAAGTATAAAAT+TGG | + | chr6_1:98922824-98922843 | None:intergenic | 20.0% |
| !!! | ATTTTATACTTTTTTGGTCA+TGG | - | chr6_1:98922824-98922843 | Msa0901890:intron | 20.0% |
| !! | GTCATAAATCGAAAAAATAA+TGG | + | chr6_1:98923792-98923811 | None:intergenic | 20.0% |
| !! | ATTTGAAAAGATGTTATCAT+TGG | + | chr6_1:98924412-98924431 | None:intergenic | 20.0% |
| !! | GTTGAGAATATTGAAAATAA+TGG | + | chr6_1:98924573-98924592 | None:intergenic | 20.0% |
| !! | AAACAATTATCCTGTTTAAA+TGG | + | chr6_1:98925089-98925108 | None:intergenic | 20.0% |
| !!! | GATAATTGTTTTTCAATCTT+TGG | - | chr6_1:98925098-98925117 | Msa0901890:intron | 20.0% |
| !! | TGTAACTTTAATGATCATTA+TGG | + | chr6_1:98925504-98925523 | None:intergenic | 20.0% |
| !! | CAATTAACTTTCAAGAAAAA+GGG | - | chr6_1:98926037-98926056 | Msa0901890:intron | 20.0% |
| !!! | TATTTTGAGTTTCTTTTCAA+AGG | - | chr6_1:98926290-98926309 | Msa0901890:five_prime_UTR | 20.0% |
| ! | ATATTGAAAAATCTTCAGGT+GGG | - | chr6_1:98920840-98920859 | Msa0901890:CDS | 25.0% |
| ! | TTACAAATCTTGATAGAACA+TGG | - | chr6_1:98921050-98921069 | Msa0901890:CDS | 25.0% |
| ! | TTTAGGAACTAACATATAAG+TGG | - | chr6_1:98921173-98921192 | Msa0901890:intron | 25.0% |
| !! | GCATTGTAATGTGATTTTAT+TGG | - | chr6_1:98921195-98921214 | Msa0901890:intron | 25.0% |
| ! | TCATGCCTTGTAAATATTTA+TGG | - | chr6_1:98921331-98921350 | Msa0901890:intron | 25.0% |
| ! | TTTAGGAAGTAACATATAAG+TGG | - | chr6_1:98921360-98921379 | Msa0901890:intron | 25.0% |
| ! | TCGTTAATCAATATACTTTG+AGG | + | chr6_1:98921452-98921471 | None:intergenic | 25.0% |
| !! | AAAGTATATTGATTAACGAG+AGG | - | chr6_1:98921453-98921472 | Msa0901890:intron | 25.0% |
| !!! | AGGATTGTTGTTTATATGAA+GGG | - | chr6_1:98921473-98921492 | Msa0901890:intron | 25.0% |
| !!! | GATTTTGAGTAAATTGATTC+TGG | - | chr6_1:98921591-98921610 | Msa0901890:intron | 25.0% |
| ! | TGGATGCATTTATATAAAAG+TGG | - | chr6_1:98921648-98921667 | Msa0901890:intron | 25.0% |
| ! | TGGATTTATCAGTGAATTTA+AGG | - | chr6_1:98921668-98921687 | Msa0901890:intron | 25.0% |
| !! | TGAGAGAATTGATTTATGTT+TGG | - | chr6_1:98921935-98921954 | Msa0901890:CDS | 25.0% |
| ! | ACTAAAATAGACATAGCTAA+AGG | - | chr6_1:98922038-98922057 | Msa0901890:intron | 25.0% |
| ! | TAAAGGAGAATTGATAAAGA+AGG | - | chr6_1:98922055-98922074 | Msa0901890:intron | 25.0% |
| ! | TAAAGAAGGAGAATTGATAA+AGG | - | chr6_1:98922069-98922088 | Msa0901890:intron | 25.0% |
| ! | AAAGAAGGAGAATTGATAAA+GGG | - | chr6_1:98922070-98922089 | Msa0901890:intron | 25.0% |
| ! | TATTAGATGTACAACATGTT+TGG | + | chr6_1:98922257-98922276 | None:intergenic | 25.0% |
| !! | AAGAAATACTTTTCGTGATT+TGG | - | chr6_1:98922584-98922603 | Msa0901890:intron | 25.0% |
| !!! | TTTTCAGTTTTGAAATGGAA+AGG | - | chr6_1:98922671-98922690 | Msa0901890:intron | 25.0% |
| ! | AAATGGAAAGGAAAAAACAA+TGG | - | chr6_1:98922683-98922702 | Msa0901890:intron | 25.0% |
| !! | TTTTCTATTTCACATGATGA+TGG | - | chr6_1:98923044-98923063 | Msa0901890:CDS | 25.0% |
| ! | TTATGAAGCAAAACAATTGA+AGG | - | chr6_1:98923073-98923092 | Msa0901890:intron | 25.0% |
| !!! | TGAACAGGTTATTTTTAAGA+TGG | - | chr6_1:98923521-98923540 | Msa0901890:intron | 25.0% |
| ! | AAATGAAGGTTTACAAGATT+CGG | + | chr6_1:98923595-98923614 | None:intergenic | 25.0% |
| !!! | ATATCGAAACTTTGAAATGA+AGG | + | chr6_1:98923609-98923628 | None:intergenic | 25.0% |
| ! | TTGTTGAATGCAATAATACA+TGG | - | chr6_1:98923652-98923671 | Msa0901890:CDS | 25.0% |
| ! | CTTCTTAAAAAAAAGACACA+TGG | + | chr6_1:98923688-98923707 | None:intergenic | 25.0% |
| ! | AGTAAAAGTCCAATAAATCA+AGG | + | chr6_1:98924542-98924561 | None:intergenic | 25.0% |
| ! | CAAGGAAAAAATTACATGTT+CGG | + | chr6_1:98924891-98924910 | None:intergenic | 25.0% |
| ! | TCTCTAATTACATTTGGATT+TGG | + | chr6_1:98924915-98924934 | None:intergenic | 25.0% |
| ! | GGAATTTCTCTAATTACATT+TGG | + | chr6_1:98924921-98924940 | None:intergenic | 25.0% |
| ! | AGAACATTCAGATTTATCAA+AGG | + | chr6_1:98925000-98925019 | None:intergenic | 25.0% |
| ! | TATTGCTCCAAATATTTACA+TGG | - | chr6_1:98925298-98925317 | Msa0901890:intron | 25.0% |
| ! | TATCTCACCATGTAAATATT+TGG | + | chr6_1:98925308-98925327 | None:intergenic | 25.0% |
| !! | AATTTAACTTATGCAACGAA+AGG | + | chr6_1:98925365-98925384 | None:intergenic | 25.0% |
| !! | CAAATGTATGCATATTTTTC+TGG | - | chr6_1:98925403-98925422 | Msa0901890:intron | 25.0% |
| ! | TACTTGAAAGTTGAAATTGT+AGG | - | chr6_1:98925443-98925462 | Msa0901890:intron | 25.0% |
| !! | AATCTAGTCTTTCACATTAT+CGG | - | chr6_1:98925474-98925493 | Msa0901890:intron | 25.0% |
| ! | ACAGTATCAATATTCCAAAA+TGG | + | chr6_1:98925685-98925704 | None:intergenic | 25.0% |
| ! | TAAGTATTCCAATGAAGTAA+CGG | - | chr6_1:98925801-98925820 | Msa0901890:intron | 25.0% |
| ! | ATTGTTTCATTTGTTTCCAA+TGG | + | chr6_1:98925847-98925866 | None:intergenic | 25.0% |
| ! | TGAGTTTCATCAAATGTAAA+TGG | + | chr6_1:98925877-98925896 | None:intergenic | 25.0% |
| ! | ATTTGATGAAACTCATTTGA+AGG | - | chr6_1:98925882-98925901 | Msa0901890:intron | 25.0% |
| !! | TTCCTAACAATAATCCTTTT+CGG | - | chr6_1:98925905-98925924 | Msa0901890:intron | 25.0% |
| !! | AATAAATTTGGTTCAGAAAG+AGG | - | chr6_1:98925948-98925967 | Msa0901890:intron | 25.0% |
| !! | CCTTTTTCTTGAAAGTTAAT+TGG | + | chr6_1:98926039-98926058 | None:intergenic | 25.0% |
| ! | CCAATTAACTTTCAAGAAAA+AGG | - | chr6_1:98926036-98926055 | Msa0901890:intron | 25.0% |
| !! | AAAGTGTAAAGTCTAAGATT+AGG | - | chr6_1:98926193-98926212 | Msa0901890:intron | 25.0% |
| ! | AAAGAAATCCAAGAAGAAAA+AGG | - | chr6_1:98926251-98926270 | Msa0901890:CDS | 25.0% |
| ! | AAGAAATCCAAGAAGAAAAA+GGG | - | chr6_1:98926252-98926271 | Msa0901890:CDS | 25.0% |
| ! | ATATGAATTGGTTCAACGTA+AGG | + | chr6_1:98920702-98920721 | None:intergenic | 30.0% |
| CATATTGAAAAATCTTCAGG+TGG | - | chr6_1:98920839-98920858 | Msa0901890:CDS | 30.0% | |
| CATATTCATGGCTTCATAAA+GGG | - | chr6_1:98920871-98920890 | Msa0901890:CDS | 30.0% | |
| ATATTCATGGCTTCATAAAG+GGG | - | chr6_1:98920872-98920891 | Msa0901890:CDS | 30.0% | |
| TGTAAGTAGAAAGTAAGTTG+TGG | - | chr6_1:98921003-98921022 | Msa0901890:CDS | 30.0% | |
| ! | GAACATGGTAGAAAAGTATA+TGG | - | chr6_1:98921065-98921084 | Msa0901890:CDS | 30.0% |
| GTAAAAAAACTTTACACCGT+CGG | + | chr6_1:98921107-98921126 | None:intergenic | 30.0% | |
| GCATTGTAATGTGATTTGAT+TGG | - | chr6_1:98921382-98921401 | Msa0901890:intron | 30.0% | |
| TTGAGGTTAATTTCTATGCA+CGG | + | chr6_1:98921435-98921454 | None:intergenic | 30.0% | |
| !! | GAGGATTGTTGTTTATATGA+AGG | - | chr6_1:98921472-98921491 | Msa0901890:intron | 30.0% |
| GAATTGATAAAGGGCAATAA+AGG | - | chr6_1:98922079-98922098 | Msa0901890:intron | 30.0% | |
| GGGCAATAAAGGAAAATAAT+AGG | - | chr6_1:98922090-98922109 | Msa0901890:intron | 30.0% | |
| ! | TTTAGCTTATTCGTGTAGTA+TGG | - | chr6_1:98922304-98922323 | Msa0901890:intron | 30.0% |
| CGATTAATTAGATGAATCCT+AGG | - | chr6_1:98922737-98922756 | Msa0901890:intron | 30.0% | |
| ! | AATTAGCTTATGAGCCATAA+CGG | + | chr6_1:98923139-98923158 | None:intergenic | 30.0% |
| TACAACAAACTCAATGTTCT+CGG | + | chr6_1:98923281-98923300 | None:intergenic | 30.0% | |
| CGTATTACAATCCAAAACAA+AGG | + | chr6_1:98923492-98923511 | None:intergenic | 30.0% | |
| ! | TTCGATATGAAACTTTTCAC+AGG | - | chr6_1:98923621-98923640 | Msa0901890:CDS | 30.0% |
| CTAAAACACACATACCTAAA+AGG | + | chr6_1:98923845-98923864 | None:intergenic | 30.0% | |
| ATTCCGATACTTCAAAACTA+GGG | + | chr6_1:98923922-98923941 | None:intergenic | 30.0% | |
| TATTCCGATACTTCAAAACT+AGG | + | chr6_1:98923923-98923942 | None:intergenic | 30.0% | |
| ATATCAAGCAAGTGATTCTT+GGG | + | chr6_1:98924030-98924049 | None:intergenic | 30.0% | |
| TATATCAAGCAAGTGATTCT+TGG | + | chr6_1:98924031-98924050 | None:intergenic | 30.0% | |
| TCTTAGATGACATTCACTAT+TGG | - | chr6_1:98924113-98924132 | Msa0901890:intron | 30.0% | |
| ATAATGACTTCAGGAAACAT+CGG | + | chr6_1:98924209-98924228 | None:intergenic | 30.0% | |
| ! | ATTAGTCTCATAATGACTTC+AGG | + | chr6_1:98924218-98924237 | None:intergenic | 30.0% |
| AGTCCAATAAATCAAGGATA+CGG | + | chr6_1:98924536-98924555 | None:intergenic | 30.0% | |
| !!! | GCTGTTTTTATAAGCTATGA+CGG | - | chr6_1:98924705-98924724 | Msa0901890:intron | 30.0% |
| !!! | CTGTTTTTATAAGCTATGAC+GGG | - | chr6_1:98924706-98924725 | Msa0901890:intron | 30.0% |
| !! | TGTTTTTATAAGCTATGACG+GGG | - | chr6_1:98924707-98924726 | Msa0901890:intron | 30.0% |
| !! | TAAGCACTTTGAGATTGTTT+AGG | + | chr6_1:98924796-98924815 | None:intergenic | 30.0% |
| ! | ATTACATTTGGATTTGGTCA+AGG | + | chr6_1:98924909-98924928 | None:intergenic | 30.0% |
| ATTGCTTTGACTATAGTTGA+GGG | + | chr6_1:98924942-98924961 | None:intergenic | 30.0% | |
| TATTGCTTTGACTATAGTTG+AGG | + | chr6_1:98924943-98924962 | None:intergenic | 30.0% | |
| AAACTTGAATCCATCAACTA+AGG | - | chr6_1:98924971-98924990 | Msa0901890:intron | 30.0% | |
| TTATCCTGTTTAAATGGTGT+AGG | + | chr6_1:98925083-98925102 | None:intergenic | 30.0% | |
| ATCCGTCCATAATATTTACA+CGG | - | chr6_1:98925541-98925560 | Msa0901890:intron | 30.0% | |
| TCTAGTCCGTGTAAATATTA+TGG | + | chr6_1:98925550-98925569 | None:intergenic | 30.0% | |
| CAATATTCCAAAATGGTATC+TGG | + | chr6_1:98925678-98925697 | None:intergenic | 30.0% | |
| !! | ATTTAATCCAGTTTCTAGCA+TGG | - | chr6_1:98925716-98925735 | Msa0901890:intron | 30.0% |
| ATCCGAAAAGGATTATTGTT+AGG | + | chr6_1:98925910-98925929 | None:intergenic | 30.0% | |
| !! | CTTTTCTTTGAGAGACTTAT+AGG | + | chr6_1:98926063-98926082 | None:intergenic | 30.0% |
| CTATAAGTCTCTCAAAGAAA+AGG | - | chr6_1:98926061-98926080 | Msa0901890:CDS | 30.0% | |
| TGATGCTTTATGCTTGAATA+TGG | - | chr6_1:98926161-98926180 | Msa0901890:intron | 30.0% | |
| AGAAATCCAAGAAGAAAAAG+GGG | - | chr6_1:98926253-98926272 | Msa0901890:CDS | 30.0% | |
| !!! | GGTTTTTGTTTCTGGGTTTT+GGG | + | chr6_1:98920632-98920651 | None:intergenic | 35.0% |
| !!! | AGGTTTTTGTTTCTGGGTTT+TGG | + | chr6_1:98920633-98920652 | None:intergenic | 35.0% |
| !! | GTTCGTAGGTTTTTGTTTCT+GGG | + | chr6_1:98920639-98920658 | None:intergenic | 35.0% |
| !! | TGTTCGTAGGTTTTTGTTTC+TGG | + | chr6_1:98920640-98920659 | None:intergenic | 35.0% |
| AAACCTACGAACATTGCAAA+TGG | - | chr6_1:98920647-98920666 | Msa0901890:CDS | 35.0% | |
| AACCTACGAACATTGCAAAT+GGG | - | chr6_1:98920648-98920667 | Msa0901890:CDS | 35.0% | |
| GCGTAGTTCTTGATATGAAT+TGG | + | chr6_1:98920714-98920733 | None:intergenic | 35.0% | |
| ATTCATATCAAGAACTACGC+TGG | - | chr6_1:98920714-98920733 | Msa0901890:CDS | 35.0% | |
| !! | TGGGTATTGATGCATATTCA+TGG | - | chr6_1:98920859-98920878 | Msa0901890:CDS | 35.0% |
| GCATATTCATGGCTTCATAA+AGG | - | chr6_1:98920870-98920889 | Msa0901890:CDS | 35.0% | |
| TATTCATGGCTTCATAAAGG+GGG | - | chr6_1:98920873-98920892 | Msa0901890:CDS | 35.0% | |
| ! | GTCATGTTTCAATTCTAGAG+AGG | + | chr6_1:98921828-98921847 | None:intergenic | 35.0% |
| ATGACTATTACGTGTGTGTT+TGG | - | chr6_1:98921843-98921862 | Msa0901890:CDS | 35.0% | |
| ! | AGCTATGATTTGTAGCTTCA+TGG | - | chr6_1:98922168-98922187 | Msa0901890:intron | 35.0% |
| GATGTACAACATGTTTGGTT+TGG | + | chr6_1:98922252-98922271 | None:intergenic | 35.0% | |
| ! | GTCTTGATTCTGATAGTGAA+AGG | - | chr6_1:98922333-98922352 | Msa0901890:intron | 35.0% |
| ! | CTGATAGTGAAAGGAAATTG+CGG | - | chr6_1:98922342-98922361 | Msa0901890:intron | 35.0% |
| !!! | ACACCAGTTGTTGTTTTTGA+TGG | - | chr6_1:98922416-98922435 | Msa0901890:CDS | 35.0% |
| !! | TACTTTTCGTGATTTGGCAA+TGG | - | chr6_1:98922590-98922609 | Msa0901890:CDS | 35.0% |
| AGTGAATATTACTCCCGTTA+TGG | - | chr6_1:98923122-98923141 | Msa0901890:intron | 35.0% | |
| ! | ATTAGCTTATGAGCCATAAC+GGG | + | chr6_1:98923138-98923157 | None:intergenic | 35.0% |
| TATGGCTCATAAGCTAATTC+AGG | - | chr6_1:98923140-98923159 | Msa0901890:intron | 35.0% | |
| TCTGCAACACAATTATACGA+AGG | + | chr6_1:98923249-98923268 | None:intergenic | 35.0% | |
| TCCAACCTTGAAACTGAAAA+AGG | - | chr6_1:98923337-98923356 | Msa0901890:CDS | 35.0% | |
| AACCTTGAAACTGAAAAAGG+CGG | - | chr6_1:98923340-98923359 | Msa0901890:CDS | 35.0% | |
| GATAGTGATCTGTTAACGTA+TGG | - | chr6_1:98923385-98923404 | Msa0901890:CDS | 35.0% | |
| ATCCAAAACAAAGGACTTCT+CGG | + | chr6_1:98923483-98923502 | None:intergenic | 35.0% | |
| !!! | AATACGCAGTTGTTTTGAAC+AGG | - | chr6_1:98923506-98923525 | Msa0901890:intron | 35.0% |
| !!! | ATTTTTAAGATGGACCGTGA+CGG | - | chr6_1:98923531-98923550 | Msa0901890:CDS | 35.0% |
| CGAAAGAATAGAGTTAGAGA+AGG | - | chr6_1:98923560-98923579 | Msa0901890:CDS | 35.0% | |
| TGAACAAGCTGAAAGAAACT+AGG | - | chr6_1:98923760-98923779 | Msa0901890:intron | 35.0% | |
| !!! | TTAGGTATGTGTGTTTTAGC+TGG | - | chr6_1:98923846-98923865 | Msa0901890:intron | 35.0% |
| !!! | ATGCCCTAGTTTTGAAGTAT+CGG | - | chr6_1:98923916-98923935 | Msa0901890:intron | 35.0% |
| TATCAAGCAAGTGATTCTTG+GGG | + | chr6_1:98924029-98924048 | None:intergenic | 35.0% | |
| TCTGTTCTTAAGCTTGAGAA+AGG | - | chr6_1:98924264-98924283 | Msa0901890:intron | 35.0% | |
| AAGGATTTGGCATAATCTTC+GGG | + | chr6_1:98924300-98924319 | None:intergenic | 35.0% | |
| GAAGGATTTGGCATAATCTT+CGG | + | chr6_1:98924301-98924320 | None:intergenic | 35.0% | |
| AGATTATGCCAAATCCTTCA+AGG | - | chr6_1:98924302-98924321 | Msa0901890:CDS | 35.0% | |
| AGTGACTCAAGAAAACTTTC+CGG | + | chr6_1:98924488-98924507 | None:intergenic | 35.0% | |
| !!! | TGACGAAGACCTCAATTTTT+TGG | - | chr6_1:98924508-98924527 | Msa0901890:CDS | 35.0% |
| !!! | GACGAAGACCTCAATTTTTT+GGG | - | chr6_1:98924509-98924528 | Msa0901890:CDS | 35.0% |
| !!! | ACGAAGACCTCAATTTTTTG+GGG | - | chr6_1:98924510-98924529 | Msa0901890:CDS | 35.0% |
| ATCACTTAAACGGTGTTTGA+TGG | + | chr6_1:98924620-98924639 | None:intergenic | 35.0% | |
| ATAGTCAAAGCAATAGCTGA+AGG | - | chr6_1:98924948-98924967 | Msa0901890:intron | 35.0% | |
| AGTTCCTACACCATTTAAAC+AGG | - | chr6_1:98925076-98925095 | Msa0901890:intron | 35.0% | |
| ! | ATTTGATAACTTCGCATCGA+CGG | - | chr6_1:98925206-98925225 | Msa0901890:intron | 35.0% |
| GGTGAGATATGATTGAATCT+CGG | - | chr6_1:98925319-98925338 | Msa0901890:intron | 35.0% | |
| GTCCGTGTAAATATTATGGA+CGG | + | chr6_1:98925546-98925565 | None:intergenic | 35.0% | |
| ! | TTCGATTCCAGATACCATTT+TGG | - | chr6_1:98925668-98925687 | Msa0901890:intron | 35.0% |
| ATATTGATACTGTGCGAACT+AGG | - | chr6_1:98925692-98925711 | Msa0901890:intron | 35.0% | |
| ACATATACCATGCTAGAAAC+TGG | + | chr6_1:98925726-98925745 | None:intergenic | 35.0% | |
| ! | TCGTGTTTTCTTATCCGAAA+AGG | + | chr6_1:98925922-98925941 | None:intergenic | 35.0% |
| ! | TTTTCGGATAAGAAAACACG+AGG | - | chr6_1:98925921-98925940 | Msa0901890:intron | 35.0% |
| ACACGAGGAGGAAATAAATT+TGG | - | chr6_1:98925936-98925955 | Msa0901890:intron | 35.0% | |
| !! | AGGAATAGTGCTGATTTGAA+AGG | - | chr6_1:98926213-98926232 | Msa0901890:CDS | 35.0% |
| TTCCCATTTGCAATGTTCGT+AGG | + | chr6_1:98920653-98920672 | None:intergenic | 40.0% | |
| AGAGGCAAAAGTGATTCTAG+AGG | + | chr6_1:98921810-98921829 | None:intergenic | 40.0% | |
| TGCATAGAGTGAATCTGCTT+CGG | - | chr6_1:98922381-98922400 | Msa0901890:intron | 40.0% | |
| CCACCATCAAAAACAACAAC+TGG | + | chr6_1:98922422-98922441 | None:intergenic | 40.0% | |
| !!! | CCAGTTGTTGTTTTTGATGG+TGG | - | chr6_1:98922419-98922438 | Msa0901890:CDS | 40.0% |
| CAATGGCTAAGCTCAAAGAA+GGG | - | chr6_1:98922607-98922626 | Msa0901890:CDS | 40.0% | |
| !! | GCTGTTTTCATAAACTGTCC+TGG | - | chr6_1:98922947-98922966 | Msa0901890:intron | 40.0% |
| CTGCTCTCTACACAGAAATA+TGG | + | chr6_1:98923104-98923123 | None:intergenic | 40.0% | |
| AACTGAGCATCTGCTTCATA+TGG | + | chr6_1:98923307-98923326 | None:intergenic | 40.0% | |
| !!! | GCCTTTTTCAGTTTCAAGGT+TGG | + | chr6_1:98923341-98923360 | None:intergenic | 40.0% |
| TTTGGAGAAGTTCTTACAGC+TGG | + | chr6_1:98923415-98923434 | None:intergenic | 40.0% | |
| ! | GACGCACAAGATCATAGTTT+TGG | + | chr6_1:98923433-98923452 | None:intergenic | 40.0% |
| AGGACTTCTCGGAAATTGAA+AGG | + | chr6_1:98923472-98923491 | None:intergenic | 40.0% | |
| !! | TTCCGAGAAGTCCTTTGTTT+TGG | - | chr6_1:98923478-98923497 | Msa0901890:intron | 40.0% |
| !!! | TTTTTAAGATGGACCGTGAC+GGG | - | chr6_1:98923532-98923551 | Msa0901890:CDS | 40.0% |
| ! | TCAGCTTGTTCATCATCTCA+AGG | + | chr6_1:98923752-98923771 | None:intergenic | 40.0% |
| ACACATACCTAAAAGGAGAG+GGG | + | chr6_1:98923838-98923857 | None:intergenic | 40.0% | |
| CACACATACCTAAAAGGAGA+GGG | + | chr6_1:98923839-98923858 | None:intergenic | 40.0% | |
| ACACACATACCTAAAAGGAG+AGG | + | chr6_1:98923840-98923859 | None:intergenic | 40.0% | |
| ! | GATTTTCTTCCATCTGTTCC+TGG | - | chr6_1:98923873-98923892 | Msa0901890:intron | 40.0% |
| ATCGATCGTGTAAGTACTTG+TGG | - | chr6_1:98923942-98923961 | Msa0901890:intron | 40.0% | |
| AAGTGCATCCTTGAAGGATT+TGG | + | chr6_1:98924313-98924332 | None:intergenic | 40.0% | |
| TCAAGAAAACTTTCCGGAAG+AGG | + | chr6_1:98924482-98924501 | None:intergenic | 40.0% | |
| TGGATGCAACAAATGCAGAA+TGG | + | chr6_1:98924600-98924619 | None:intergenic | 40.0% | |
| TCAAAGGCTTCCTTAGTTGA+TGG | + | chr6_1:98924984-98925003 | None:intergenic | 40.0% | |
| !! | ACTTTTCCTGAGTTGACCAA+TGG | + | chr6_1:98925054-98925073 | None:intergenic | 40.0% |
| TCTCTTTATCTGCAGTGACA+AGG | - | chr6_1:98925764-98925783 | Msa0901890:intron | 40.0% | |
| TCAGAAACTGATCATGCCAT+TGG | - | chr6_1:98925828-98925847 | Msa0901890:intron | 40.0% | |
| GGTTCAGAAAGAGGAAACAA+TGG | - | chr6_1:98925957-98925976 | Msa0901890:intron | 40.0% | |
| AGTAGAAGTCACTGATGAAC+AGG | - | chr6_1:98926110-98926129 | Msa0901890:intron | 40.0% | |
| !! | AGTGCTGATTTGAAAGGAAG+TGG | - | chr6_1:98926219-98926238 | Msa0901890:CDS | 40.0% |
| !! | TTCTCAGTTGCTGCTTTGCA+AGG | + | chr6_1:98922452-98922471 | None:intergenic | 45.0% |
| AAGCAGCAACTGAGAAAGAG+AGG | - | chr6_1:98922456-98922475 | Msa0901890:CDS | 45.0% | |
| GCAATGGCTAAGCTCAAAGA+AGG | - | chr6_1:98922606-98922625 | Msa0901890:CDS | 45.0% | |
| ! | TGCTGCTTCAGAACTCTTTC+AGG | - | chr6_1:98922638-98922657 | Msa0901890:CDS | 45.0% |
| AAACTGTCCTGGAGAGCTTA+TGG | - | chr6_1:98922958-98922977 | Msa0901890:intron | 45.0% | |
| !!! | TGCCGCCTTTTTCAGTTTCA+AGG | + | chr6_1:98923345-98923364 | None:intergenic | 45.0% |
| AACTATGATCTTGTGCGTCG+AGG | - | chr6_1:98923434-98923453 | Msa0901890:intron | 45.0% | |
| ! | TTTTTCCCCCCTCTCCTTTT+AGG | - | chr6_1:98923828-98923847 | Msa0901890:intron | 45.0% |
| ACATACCTAAAAGGAGAGGG+GGG | + | chr6_1:98923836-98923855 | None:intergenic | 45.0% | |
| CACATACCTAAAAGGAGAGG+GGG | + | chr6_1:98923837-98923856 | None:intergenic | 45.0% | |
| CTTCCATCTGTTCCTGGAAT+TGG | - | chr6_1:98923879-98923898 | Msa0901890:intron | 45.0% | |
| ACACCAATTCCAGGAACAGA+TGG | + | chr6_1:98923885-98923904 | None:intergenic | 45.0% | |
| AGCAAGTGATTCTTGGGGAT+AGG | + | chr6_1:98924024-98924043 | None:intergenic | 45.0% | |
| AACAGCAAGTGCATCCTTGA+AGG | + | chr6_1:98924319-98924338 | None:intergenic | 45.0% | |
| CTTCATGTGCTTGAGCTCTT+TGG | + | chr6_1:98924459-98924478 | None:intergenic | 45.0% | |
| GATACGGCCCCAAAAAATTG+AGG | + | chr6_1:98924520-98924539 | None:intergenic | 45.0% | |
| GGGCCGTATCCTTGATTTAT+TGG | - | chr6_1:98924530-98924549 | Msa0901890:CDS | 45.0% | |
| GCAACAAATGCAGAATGGAG+AGG | + | chr6_1:98924595-98924614 | None:intergenic | 45.0% | |
| CAATGGTATGGGGATCAATG+GGG | + | chr6_1:98925037-98925056 | None:intergenic | 45.0% | |
| CCAATGGTATGGGGATCAAT+GGG | + | chr6_1:98925038-98925057 | None:intergenic | 45.0% | |
| ACCAATGGTATGGGGATCAA+TGG | + | chr6_1:98925039-98925058 | None:intergenic | 45.0% | |
| ! | CTGAGTTGACCAATGGTATG+GGG | + | chr6_1:98925047-98925066 | None:intergenic | 45.0% |
| ! | CCTGAGTTGACCAATGGTAT+GGG | + | chr6_1:98925048-98925067 | None:intergenic | 45.0% |
| ! | TCCTGAGTTGACCAATGGTA+TGG | + | chr6_1:98925049-98925068 | None:intergenic | 45.0% |
| !! | CTGAAGTGCCGTTACTTCAT+TGG | + | chr6_1:98925812-98925831 | None:intergenic | 45.0% |
| TCGGATAAGAAAACACGAGG+AGG | - | chr6_1:98925924-98925943 | Msa0901890:intron | 45.0% | |
| GTCACTGATGAACAGGTTTC+AGG | - | chr6_1:98926117-98926136 | Msa0901890:intron | 45.0% | |
| !! | GCTGATTTGAAAGGAAGTGG+TGG | - | chr6_1:98926222-98926241 | Msa0901890:CDS | 45.0% |
| ! | GTGACTCCCCTTTTTCTTCT+TGG | + | chr6_1:98926262-98926281 | None:intergenic | 45.0% |
| !!! | TTTATTTATTTTAAGTTTTA+AGG | - | chr6_1:98922491-98922510 | Msa0901890:intron | 5.0% |
| GACATGTCCATAAGCTCTCC+AGG | + | chr6_1:98922968-98922987 | None:intergenic | 50.0% | |
| TTCTTTCGCCATTCCCGTCA+CGG | + | chr6_1:98923548-98923567 | None:intergenic | 50.0% | |
| CACGTTGTGCACACACTACA+CGG | - | chr6_1:98924082-98924101 | Msa0901890:intron | 50.0% | |
| CAAGCACATGAAGCCTCTTC+CGG | - | chr6_1:98924466-98924485 | Msa0901890:CDS | 50.0% | |
| TGGGGATCAATGGGGTGTAA+AGG | + | chr6_1:98925029-98925048 | None:intergenic | 50.0% | |
| CCCATTGATCCCCATACCAT+TGG | - | chr6_1:98925035-98925054 | Msa0901890:intron | 50.0% | |
| CCCATACCATTGGTCAACTC+AGG | - | chr6_1:98925045-98925064 | Msa0901890:intron | 50.0% | |
| GGTTTCAGGAGTGACTGAAG+AGG | - | chr6_1:98926131-98926150 | Msa0901890:intron | 50.0% | |
| ! | AAGATGGACCGTGACGGGAA+TGG | - | chr6_1:98923537-98923556 | Msa0901890:CDS | 55.0% |
| GCTCGAGCAACACCAATTCC+AGG | + | chr6_1:98923894-98923913 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 98920623 | 98926317 | 98920623 | ID=Msa0901890;Name=Msa0901890 |
| chr6_1 | mRNA | 98920623 | 98926317 | 98920623 | ID=Msa0901890-mRNA-1;Parent=Msa0901890;Name=Msa0901890-mRNA-1;_AED=0.06;_eAED=0.10;_QI=43|0.90|0.83|1|1|1|12|0|560 |
| chr6_1 | exon | 98920623 | 98921161 | 98920623 | ID=Msa0901890-mRNA-1:exon:17517;Parent=Msa0901890-mRNA-1 |
| chr6_1 | exon | 98921836 | 98922008 | 98921836 | ID=Msa0901890-mRNA-1:exon:17516;Parent=Msa0901890-mRNA-1 |
| chr6_1 | exon | 98922406 | 98922498 | 98922406 | ID=Msa0901890-mRNA-1:exon:17515;Parent=Msa0901890-mRNA-1 |
| chr6_1 | exon | 98922585 | 98922682 | 98922585 | ID=Msa0901890-mRNA-1:exon:17514;Parent=Msa0901890-mRNA-1 |
| chr6_1 | exon | 98922990 | 98923090 | 98922990 | ID=Msa0901890-mRNA-1:exon:17513;Parent=Msa0901890-mRNA-1 |
| chr6_1 | exon | 98923298 | 98923412 | 98923298 | ID=Msa0901890-mRNA-1:exon:17512;Parent=Msa0901890-mRNA-1 |
| chr6_1 | exon | 98923523 | 98923672 | 98923523 | ID=Msa0901890-mRNA-1:exon:17511;Parent=Msa0901890-mRNA-1 |
| chr6_1 | exon | 98923779 | 98923823 | 98923779 | ID=Msa0901890-mRNA-1:exon:17510;Parent=Msa0901890-mRNA-1 |
| chr6_1 | exon | 98924281 | 98924359 | 98924281 | ID=Msa0901890-mRNA-1:exon:17509;Parent=Msa0901890-mRNA-1 |
| chr6_1 | exon | 98924457 | 98924631 | 98924457 | ID=Msa0901890-mRNA-1:exon:17508;Parent=Msa0901890-mRNA-1 |
| chr6_1 | exon | 98926046 | 98926082 | 98926046 | ID=Msa0901890-mRNA-1:exon:17507;Parent=Msa0901890-mRNA-1 |
| chr6_1 | exon | 98926197 | 98926317 | 98926197 | ID=Msa0901890-mRNA-1:exon:17506;Parent=Msa0901890-mRNA-1 |
| chr6_1 | five_prime_UTR | 98926275 | 98926317 | 98926275 | ID=Msa0901890-mRNA-1:five_prime_utr;Parent=Msa0901890-mRNA-1 |
| chr6_1 | CDS | 98926197 | 98926274 | 98926197 | ID=Msa0901890-mRNA-1:cds;Parent=Msa0901890-mRNA-1 |
| chr6_1 | CDS | 98926046 | 98926082 | 98926046 | ID=Msa0901890-mRNA-1:cds;Parent=Msa0901890-mRNA-1 |
| chr6_1 | CDS | 98924457 | 98924631 | 98924457 | ID=Msa0901890-mRNA-1:cds;Parent=Msa0901890-mRNA-1 |
| chr6_1 | CDS | 98924281 | 98924359 | 98924281 | ID=Msa0901890-mRNA-1:cds;Parent=Msa0901890-mRNA-1 |
| chr6_1 | CDS | 98923779 | 98923823 | 98923779 | ID=Msa0901890-mRNA-1:cds;Parent=Msa0901890-mRNA-1 |
| chr6_1 | CDS | 98923523 | 98923672 | 98923523 | ID=Msa0901890-mRNA-1:cds;Parent=Msa0901890-mRNA-1 |
| chr6_1 | CDS | 98923298 | 98923412 | 98923298 | ID=Msa0901890-mRNA-1:cds;Parent=Msa0901890-mRNA-1 |
| chr6_1 | CDS | 98922990 | 98923090 | 98922990 | ID=Msa0901890-mRNA-1:cds;Parent=Msa0901890-mRNA-1 |
| chr6_1 | CDS | 98922585 | 98922682 | 98922585 | ID=Msa0901890-mRNA-1:cds;Parent=Msa0901890-mRNA-1 |
| chr6_1 | CDS | 98922406 | 98922498 | 98922406 | ID=Msa0901890-mRNA-1:cds;Parent=Msa0901890-mRNA-1 |
| chr6_1 | CDS | 98921836 | 98922008 | 98921836 | ID=Msa0901890-mRNA-1:cds;Parent=Msa0901890-mRNA-1 |
| chr6_1 | CDS | 98920623 | 98921161 | 98920623 | ID=Msa0901890-mRNA-1:cds;Parent=Msa0901890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
