Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0962890 | XP_013442684.1 | 90.240 | 584 | 42 | 2 | 1 | 579 | 1 | 574 | 0.0 | 1033 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0962890 | sp|Q8L6Z7|EXO1_ARATH | 44.092 | 347 | 175 | 7 | 1 | 342 | 1 | 333 | 1.18e-86 | 287 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0962890 | A0A072TGL8 | 90.240 | 584 | 42 | 2 | 1 | 579 | 1 | 574 | 0.0 | 1033 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0717900 | Msa0962890 | 0.803658 | 3.137681e-49 | -8.615850e-47 |
| Msa0153210 | Msa0962890 | 0.800317 | 1.525450e-48 | -8.615850e-47 |
| Msa0901890 | Msa0962890 | 0.813841 | 2.087002e-51 | -8.615850e-47 |
| Msa0923830 | Msa0962890 | 0.863675 | 2.101364e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0962890 | MtrunA17_Chr6g0482931 | 90.240 | 584 | 42 | 2 | 1 | 579 | 1 | 574 | 0.0 | 1033 |
| Msa0962890 | MtrunA17_Chr8g0380081 | 42.284 | 324 | 168 | 6 | 1 | 319 | 1 | 310 | 3.59e-84 | 265 |
| Msa0962890 | MtrunA17_Chr1g0193411 | 24.496 | 347 | 236 | 10 | 1 | 333 | 1 | 335 | 3.20e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0962890 | AT1G18090.1 | 55.042 | 476 | 196 | 5 | 1 | 471 | 1 | 463 | 1.06e-179 | 520 |
| Msa0962890 | AT1G18090.2 | 54.832 | 476 | 197 | 5 | 1 | 471 | 1 | 463 | 3.01e-179 | 519 |
| Msa0962890 | AT1G29630.2 | 44.092 | 347 | 175 | 7 | 1 | 342 | 1 | 333 | 1.19e-87 | 287 |
| Msa0962890 | AT1G29630.1 | 49.479 | 192 | 86 | 4 | 1 | 190 | 1 | 183 | 2.14e-51 | 187 |
| Msa0962890 | AT1G29630.3 | 40.000 | 175 | 97 | 3 | 171 | 342 | 10 | 179 | 1.03e-31 | 130 |
| Msa0962890 | AT5G26680.2 | 25.195 | 385 | 249 | 14 | 1 | 369 | 1 | 362 | 2.33e-12 | 69.3 |
| Msa0962890 | AT5G26680.5 | 25.152 | 330 | 221 | 11 | 1 | 316 | 1 | 318 | 4.47e-12 | 68.6 |
| Msa0962890 | AT5G26680.4 | 25.152 | 330 | 221 | 11 | 1 | 316 | 1 | 318 | 4.47e-12 | 68.6 |
| Msa0962890 | AT5G26680.3 | 25.152 | 330 | 221 | 11 | 1 | 316 | 1 | 318 | 4.47e-12 | 68.6 |
| Msa0962890 | AT5G26680.1 | 25.152 | 330 | 221 | 11 | 1 | 316 | 1 | 318 | 4.62e-12 | 68.9 |
Find 93 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGCTTCAGAACTCTTTC+AGG | 0.171774 | 6_3:-86641578 | Msa0962890:intron |
| CAAATTAACTTTCAAGAAAA+AGG | 0.178781 | 6_3:-86638202 | Msa0962890:CDS |
| CTTCCATCTGTTCCTGGAAT+TGG | 0.223676 | 6_3:-86640359 | Msa0962890:CDS |
| TTCGATTCCAGATACCATTT+TGG | 0.245906 | 6_3:-86638570 | Msa0962890:intron |
| CTTCATGTGCTTGAGCTCTT+TGG | 0.248708 | 6_3:+86639782 | None:intergenic |
| GTCACTGATGAACAGGTTTC+AGG | 0.261774 | 6_3:-86638121 | Msa0962890:CDS |
| TGAGTTTCATCAAATGTAAA+TGG | 0.262758 | 6_3:+86638364 | None:intergenic |
| ACACGAGGAGGAAATAAATT+TGG | 0.270972 | 6_3:-86638302 | Msa0962890:CDS |
| TGATGCTTTATGCTTGAATA+TGG | 0.271831 | 6_3:-86638077 | Msa0962890:CDS |
| AAAGAAATCCAAGAAGAAAA+AGG | 0.282205 | 6_3:-86637987 | Msa0962890:CDS |
| TCCAACCTTGAAACTGAAAA+AGG | 0.300940 | 6_3:-86640879 | Msa0962890:CDS |
| TTTAGCTTATTCGTGTAGTA+TGG | 0.302754 | 6_3:-86641912 | Msa0962890:intron |
| GCATATTCATGGCTTCATAA+AGG | 0.327393 | 6_3:-86642942 | Msa0962890:CDS |
| CTGAAGTGCCGTTACTTCAT+TGG | 0.329550 | 6_3:+86638429 | None:intergenic |
| TCAAAGGCTTCCTTAGTTGA+TGG | 0.343464 | 6_3:+86639257 | None:intergenic |
| GAAGGATTTGGCATAATCTT+CGG | 0.358784 | 6_3:+86639940 | None:intergenic |
| ATCCGAAAAGGATTATTGTT+AGG | 0.361413 | 6_3:+86638331 | None:intergenic |
| AAGGATTTGGCATAATCTTC+GGG | 0.365199 | 6_3:+86639941 | None:intergenic |
| CATATTCATGGCTTCATAAA+GGG | 0.367960 | 6_3:-86642941 | Msa0962890:CDS |
| ACAGTATCAATATTCCAAAA+TGG | 0.374302 | 6_3:+86638556 | None:intergenic |
| AAGTGCATCCTTGAAGGATT+TGG | 0.375301 | 6_3:+86639928 | None:intergenic |
| CAAGCACATGAAGCCTCTTC+CGG | 0.378622 | 6_3:-86639772 | Msa0962890:CDS |
| AAACCTACGAACATATCAAA+TGG | 0.386042 | 6_3:-86643165 | Msa0962890:exon |
| ACATATACCATGCTAGAAAC+TGG | 0.387867 | 6_3:+86638515 | None:intergenic |
| TATGGCTCATAAGCTAATTC+AGG | 0.388193 | 6_3:-86641076 | Msa0962890:intron |
| AGTGACTCAAGAAAACTTTC+CGG | 0.394862 | 6_3:+86639753 | None:intergenic |
| AATAAATTTGGTTCAGAAAG+AGG | 0.396492 | 6_3:-86638290 | Msa0962890:CDS |
| GCGTAGTTCTTGATGTGAAT+TGG | 0.413052 | 6_3:+86643101 | None:intergenic |
| TTCTTTCGCCATTCCCGTCA+CGG | 0.413869 | 6_3:+86640671 | None:intergenic |
| AACTGAGCATCTGCTTCATA+TGG | 0.416714 | 6_3:+86640912 | None:intergenic |
| ATTGTTTCATTTGTTTCCAA+TGG | 0.417616 | 6_3:+86638394 | None:intergenic |
| TCCTGAGTTGACCAATGGTA+TGG | 0.418566 | 6_3:+86639192 | None:intergenic |
| CCAATGGTATGGGGATCAAT+GGG | 0.419906 | 6_3:+86639203 | None:intergenic |
| ATTTGATGAAACTCATTTGA+AGG | 0.420604 | 6_3:-86638356 | Msa0962890:CDS |
| AGTAGAAGTCACTGATGAAC+AGG | 0.422610 | 6_3:-86638128 | Msa0962890:CDS |
| AAACGAAGGTTTACAAGATT+CGG | 0.424513 | 6_3:+86640624 | None:intergenic |
| ACCAATGGTATGGGGATCAA+TGG | 0.429092 | 6_3:+86639202 | None:intergenic |
| TACAACAAACTCAATGTTCT+CGG | 0.429534 | 6_3:+86640938 | None:intergenic |
| TTCTCAGTTGCTGCTTTGCA+AGG | 0.434081 | 6_3:+86641767 | None:intergenic |
| TGGGTATTGATGCATATTCA+TGG | 0.440605 | 6_3:-86642953 | Msa0962890:CDS |
| TGGGGATCAATGGGGTGTAA+AGG | 0.443266 | 6_3:+86639212 | None:intergenic |
| AACAGCAAGTGCATCCTTGA+AGG | 0.446780 | 6_3:+86639922 | None:intergenic |
| TCAAGAAAACTTTCCGGAAG+AGG | 0.455673 | 6_3:+86639759 | None:intergenic |
| AGTGAATATTACTCCCGTTA+TGG | 0.456097 | 6_3:-86641094 | Msa0962890:CDS |
| ATGTGAATTGGTTCAACGTA+AGG | 0.459068 | 6_3:+86643113 | None:intergenic |
| GCTCGAGCAACACCAATTCC+AGG | 0.467358 | 6_3:+86640347 | None:intergenic |
| TGCATAGAGTGAATCTGCTT+CGG | 0.473122 | 6_3:-86641835 | Msa0962890:CDS |
| CTATAAGTCTCTCAAAGAAA+AGG | 0.481150 | 6_3:-86638177 | Msa0962890:CDS |
| AGTTCTGATTTGAAAGGAAG+TGG | 0.482769 | 6_3:-86638019 | Msa0962890:CDS |
| GATAGTGATCTGTTAACATA+TGG | 0.483252 | 6_3:-86640831 | Msa0962890:CDS |
| GAAGTGTAAAGTCTAAGATT+AGG | 0.486053 | 6_3:-86638045 | Msa0962890:CDS |
| CCTGAGTTGACCAATGGTAT+GGG | 0.491119 | 6_3:+86639193 | None:intergenic |
| AAACTTGAATCCATCAACTA+AGG | 0.492672 | 6_3:-86639267 | Msa0962890:CDS |
| TATTCCGATACTTCGAAACT+AGG | 0.495223 | 6_3:+86640318 | None:intergenic |
| TCTGTTCTTAAGCTTGAGAA+AGG | 0.495968 | 6_3:-86639974 | Msa0962890:CDS |
| ATTGCTTTGACTATAGTTGA+GGG | 0.500256 | 6_3:+86639299 | None:intergenic |
| AACCTACGAACATATCAAAT+GGG | 0.502600 | 6_3:-86643164 | Msa0962890:exon |
| ATATTGATACTGTGCGAACT+AGG | 0.514948 | 6_3:-86638546 | Msa0962890:CDS |
| TCAGAAACTGATCATGCCAT+TGG | 0.517797 | 6_3:-86638410 | Msa0962890:CDS |
| CGAAAGAATAGAGTTAGAGA+AGG | 0.520110 | 6_3:-86640656 | Msa0962890:CDS |
| GCAATGGCTAAGCTCAAAGA+AGG | 0.521067 | 6_3:-86641610 | Msa0962890:CDS |
| ATTAGCTTATGAGCCATAAC+GGG | 0.524793 | 6_3:+86641081 | None:intergenic |
| TATTGCTTTGACTATAGTTG+AGG | 0.533953 | 6_3:+86639298 | None:intergenic |
| AGATTATGCCAAATCCTTCA+AGG | 0.535204 | 6_3:-86639936 | Msa0962890:CDS |
| GTCTTGATTCTGATAGTGAA+AGG | 0.537551 | 6_3:-86641883 | Msa0962890:CDS |
| AATTAGCTTATGAGCCATAA+CGG | 0.541559 | 6_3:+86641080 | None:intergenic |
| AAGATGGACCGTGACGGGAA+TGG | 0.545823 | 6_3:-86640679 | Msa0962890:CDS |
| AGGAATAGTTCTGATTTGAA+AGG | 0.551955 | 6_3:-86638025 | Msa0962890:CDS |
| CCCATTGATCCCCATACCAT+TGG | 0.554789 | 6_3:-86639203 | Msa0962890:CDS |
| ATGCCCTAGTTTCGAAGTAT+CGG | 0.555485 | 6_3:-86640322 | Msa0962890:CDS |
| ATTTAATCCAGTTTCTAGCA+TGG | 0.562068 | 6_3:-86638522 | Msa0962890:CDS |
| CCCATACCATTGGTCAACTC+AGG | 0.567256 | 6_3:-86639193 | Msa0962890:CDS |
| ATATCGAAACTTTGAAACGA+AGG | 0.569884 | 6_3:+86640610 | None:intergenic |
| ATTCCGATACTTCGAAACTA+GGG | 0.570030 | 6_3:+86640319 | None:intergenic |
| AGAACATTCAGATTTATCAA+AGG | 0.570621 | 6_3:+86639241 | None:intergenic |
| TTCCCATTTGATATGTTCGT+AGG | 0.573749 | 6_3:+86643162 | None:intergenic |
| TAAGTATTCCAATGAAGTAA+CGG | 0.577244 | 6_3:-86638437 | Msa0962890:CDS |
| ACACCAATTCCAGGAACAGA+TGG | 0.577825 | 6_3:+86640356 | None:intergenic |
| CTGAGTTGACCAATGGTATG+GGG | 0.582491 | 6_3:+86639194 | None:intergenic |
| TCTCTTTATCTGCAGTGACA+AGG | 0.588984 | 6_3:-86638474 | Msa0962890:CDS |
| ATAGTCAAAGCAATAGCTGA+AGG | 0.594326 | 6_3:-86639290 | Msa0962890:CDS |
| TCTGATTTGAAAGGAAGTGG+TGG | 0.597202 | 6_3:-86638016 | Msa0962890:CDS |
| AAGCAGCAACTGAGAAAGAG+AGG | 0.604690 | 6_3:-86641760 | Msa0962890:CDS |
| GGTTCAGAAAGAGGAAACAA+TGG | 0.605526 | 6_3:-86638281 | Msa0962890:CDS |
| ATTCACATCAAGAACTACGC+TGG | 0.610704 | 6_3:-86643098 | Msa0962890:CDS |
| ATATTCATGGCTTCATAAAG+GGG | 0.632304 | 6_3:-86642940 | Msa0962890:CDS |
| GGTTTCAGGAGTGACTGAAG+TGG | 0.640700 | 6_3:-86638107 | Msa0962890:CDS |
| CTGATAGTGAAAGGAAATTG+CGG | 0.646657 | 6_3:-86641874 | Msa0962890:CDS |
| TCGGATAAGAAAACACGAGG+AGG | 0.676541 | 6_3:-86638314 | Msa0962890:CDS |
| CAATGGCTAAGCTCAAAGAA+GGG | 0.677217 | 6_3:-86641609 | Msa0962890:CDS |
| CAATGGTATGGGGATCAATG+GGG | 0.687422 | 6_3:+86639204 | None:intergenic |
| TATTCATGGCTTCATAAAGG+GGG | 0.697515 | 6_3:-86642939 | Msa0962890:intron |
| TGCTTGAATATGGAGTCACA+AGG | 0.699784 | 6_3:-86638067 | Msa0962890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATATATATGTGATAAT+AGG | + | chr6_3:86641056-86641075 | None:intergenic | 10.0% |
| !! | TAAAACTAATTACATATATA+AGG | + | chr6_3:86641751-86641770 | None:intergenic | 10.0% |
| !!! | TTTTTAATCAAAATTTCATC+TGG | - | chr6_3:86638098-86638117 | Msa0962890:CDS | 15.0% |
| !!! | TTTTAATCAAAATTTCATCT+GGG | - | chr6_3:86638099-86638118 | Msa0962890:CDS | 15.0% |
| !!! | AATATTTATGGTGATATTTT+AGG | - | chr6_3:86638476-86638495 | Msa0962890:CDS | 15.0% |
| !! | TAGAAATAAATCTAAAAAGT+AGG | - | chr6_3:86638572-86638591 | Msa0962890:intron | 15.0% |
| !!! | ATTTAATTTATATACACTGA+CGG | - | chr6_3:86638595-86638614 | Msa0962890:intron | 15.0% |
| !!! | AATATTTATGGAGATATTTT+AGG | - | chr6_3:86638663-86638682 | Msa0962890:intron | 15.0% |
| !! | AAAAAACAATGGTTATTTAT+GGG | - | chr6_3:86639610-86639629 | Msa0962890:intron | 15.0% |
| !!! | TGTTTTTATAACAAAAGATA+AGG | - | chr6_3:86639810-86639829 | Msa0962890:intron | 15.0% |
| !! | CTTATATATAATCACTTAAA+CGG | + | chr6_3:86641524-86641543 | None:intergenic | 15.0% |
| !!! | TTTTAATTCATCTTTTGAAA+TGG | + | chr6_3:86641553-86641572 | None:intergenic | 15.0% |
| !!! | ACAATTTTTATTGATATTCT+GGG | + | chr6_3:86642020-86642039 | None:intergenic | 15.0% |
| !!! | TACAATTTTTATTGATATTC+TGG | + | chr6_3:86642021-86642040 | None:intergenic | 15.0% |
| !! | AATATCAATAAAAATTGTAC+AGG | - | chr6_3:86642022-86642041 | Msa0962890:intron | 15.0% |
| !! | AAATTAACTTTCAAGAAAAA+GGG | - | chr6_3:86642931-86642950 | Msa0962890:intron | 15.0% |
| !! | TTCTATCAAGATTTGTAATA+TGG | + | chr6_3:86638368-86638387 | None:intergenic | 20.0% |
| !!! | ATTTAATTTATATACACCGA+CGG | - | chr6_3:86638408-86638427 | Msa0962890:CDS | 20.0% |
| !! | TCATGCATTGTAAATATTTA+TGG | - | chr6_3:86638464-86638483 | Msa0962890:CDS | 20.0% |
| !!! | CATTGTAATGTGATTTTATT+GGG | - | chr6_3:86638516-86638535 | Msa0962890:CDS | 20.0% |
| !! | TATCTCCATAAATATTTACA+AGG | + | chr6_3:86638659-86638678 | None:intergenic | 20.0% |
| !! | ATTATAACTAAGTGTATGTT+TGG | - | chr6_3:86638870-86638889 | Msa0962890:intron | 20.0% |
| !! | AATGAAAAGTGATTTATGTT+TGG | - | chr6_3:86638949-86638968 | Msa0962890:intron | 20.0% |
| !!! | AGAATTGATTTTAAGATGTT+TGG | + | chr6_3:86639112-86639131 | None:intergenic | 20.0% |
| !! | TTTATGATGTTTGTTTGATT+TGG | - | chr6_3:86639465-86639484 | Msa0962890:intron | 20.0% |
| !!! | AAGAAATATTTTTCGTGATT+TGG | - | chr6_3:86639500-86639519 | Msa0962890:intron | 20.0% |
| !!! | AACATTTTTCAGTTTTGAAA+TGG | - | chr6_3:86639582-86639601 | Msa0962890:intron | 20.0% |
| !! | GAAAAAACAATGGTTATTTA+TGG | - | chr6_3:86639609-86639628 | Msa0962890:intron | 20.0% |
| !! | AAAAACAATGGTTATTTATG+GGG | - | chr6_3:86639611-86639630 | Msa0962890:intron | 20.0% |
| !! | TAATTATTCTAGTAAAACCT+AGG | + | chr6_3:86639673-86639692 | None:intergenic | 20.0% |
| !!! | ATGCCAATTTTATACTTTTT+TGG | - | chr6_3:86639734-86639753 | Msa0962890:CDS | 20.0% |
| !!! | TGACCAAAAAAGTATAAAAT+TGG | + | chr6_3:86639740-86639759 | None:intergenic | 20.0% |
| !!! | ATTTTATACTTTTTTGGTCA+TGG | - | chr6_3:86639740-86639759 | Msa0962890:CDS | 20.0% |
| !!! | TGAATAGGTTATTTTTAAGA+TGG | - | chr6_3:86640437-86640456 | Msa0962890:intron | 20.0% |
| !!! | TTCTTTAAAAAAAAGACACA+TGG | + | chr6_3:86640604-86640623 | None:intergenic | 20.0% |
| !!! | ATGTGTCTTTTTTTTAAAGA+AGG | - | chr6_3:86640603-86640622 | Msa0962890:CDS | 20.0% |
| !! | ATTTGAAAAGATGTTATCAT+TGG | + | chr6_3:86641306-86641325 | None:intergenic | 20.0% |
| !! | AAACAATTATCCTGTTTAAA+TGG | + | chr6_3:86641983-86642002 | None:intergenic | 20.0% |
| !!! | GATAATTGTTTTTCAATCTT+TGG | - | chr6_3:86641992-86642011 | Msa0962890:intron | 20.0% |
| !! | TGTAACTTTAATGATCATTA+TGG | + | chr6_3:86642397-86642416 | None:intergenic | 20.0% |
| !! | AATAATGTTAGGTATGTTTA+TGG | - | chr6_3:86642509-86642528 | Msa0962890:intron | 20.0% |
| !! | CAAATTAACTTTCAAGAAAA+AGG | - | chr6_3:86642930-86642949 | Msa0962890:intron | 20.0% |
| ! | ATTCATATTGCAAAATCTTC+AGG | - | chr6_3:86638156-86638175 | Msa0962890:CDS | 25.0% |
| ! | TTACAAATCTTGATAGAACA+TGG | - | chr6_3:86638370-86638389 | Msa0962890:CDS | 25.0% |
| ! | TTTAGGAACTAACATATAAG+TGG | - | chr6_3:86638493-86638512 | Msa0962890:CDS | 25.0% |
| !! | GCATTGTAATGTGATTTTAT+TGG | - | chr6_3:86638515-86638534 | Msa0962890:CDS | 25.0% |
| ! | TCATGCCTTGTAAATATTTA+TGG | - | chr6_3:86638651-86638670 | Msa0962890:intron | 25.0% |
| ! | TTTAGGAAGTAACATATAAG+TGG | - | chr6_3:86638680-86638699 | Msa0962890:intron | 25.0% |
| ! | TCGTTAATCAATATACTTTG+AGG | + | chr6_3:86638772-86638791 | None:intergenic | 25.0% |
| !! | AAAGTATATTGATTAACGAG+AGG | - | chr6_3:86638773-86638792 | Msa0962890:intron | 25.0% |
| !!! | AGGATTGTTGTTTATATGAA+AGG | - | chr6_3:86638793-86638812 | Msa0962890:intron | 25.0% |
| !!! | GGATTGTTGTTTATATGAAA+GGG | - | chr6_3:86638794-86638813 | Msa0962890:intron | 25.0% |
| !!! | GATTTTGAGTAAATTGATTC+TGG | - | chr6_3:86638912-86638931 | Msa0962890:intron | 25.0% |
| ! | TGGATGCATTTATATAAAAG+TGG | - | chr6_3:86638969-86638988 | Msa0962890:intron | 25.0% |
| !!! | TTTTCAGTTTTGAAATGGAA+AGG | - | chr6_3:86639587-86639606 | Msa0962890:intron | 25.0% |
| ! | AAATGGAAAGGAAAAAACAA+TGG | - | chr6_3:86639599-86639618 | Msa0962890:intron | 25.0% |
| ! | TCAAAAGAAAGCAAAGAATA+AGG | - | chr6_3:86639700-86639719 | Msa0962890:intron | 25.0% |
| !! | TTTTCTATTTCACATGATGA+TGG | - | chr6_3:86639960-86639979 | Msa0962890:CDS | 25.0% |
| ! | TTATGAAGCAAAACAATTGA+AGG | - | chr6_3:86639989-86640008 | Msa0962890:intron | 25.0% |
| ! | TTGTTGAATGCAATAATACA+TGG | - | chr6_3:86640568-86640587 | Msa0962890:intron | 25.0% |
| !!! | TATTTTCTAGTATACACCAA+AGG | + | chr6_3:86641026-86641045 | None:intergenic | 25.0% |
| ! | AGTAAAAGTCCAATAAATCA+AGG | + | chr6_3:86641436-86641455 | None:intergenic | 25.0% |
| !!! | GTTGAGAGTATTGAAAATAA+TGG | + | chr6_3:86641467-86641486 | None:intergenic | 25.0% |
| ! | CAAGGAAAAAATTACATGTT+CGG | + | chr6_3:86641785-86641804 | None:intergenic | 25.0% |
| ! | TCTCTAATTACATTTGGATT+TGG | + | chr6_3:86641809-86641828 | None:intergenic | 25.0% |
| ! | GGAATTTCTCTAATTACATT+TGG | + | chr6_3:86641815-86641834 | None:intergenic | 25.0% |
| ! | AGAACATTCAGATTTATCAA+AGG | + | chr6_3:86641894-86641913 | None:intergenic | 25.0% |
| ! | TATTGCTCCAAATATTTACA+TGG | - | chr6_3:86642192-86642211 | Msa0962890:intron | 25.0% |
| ! | TATCTCACCATGTAAATATT+TGG | + | chr6_3:86642202-86642221 | None:intergenic | 25.0% |
| !! | AATTTAACTTATGCAACGAA+AGG | + | chr6_3:86642258-86642277 | None:intergenic | 25.0% |
| !! | CAAATGTATGCATAATTTTC+TGG | - | chr6_3:86642296-86642315 | Msa0962890:intron | 25.0% |
| ! | TACTTGAAAGTTGAAATTGT+AGG | - | chr6_3:86642336-86642355 | Msa0962890:intron | 25.0% |
| !! | AATCTAGTCTTTCACATTAT+CGG | - | chr6_3:86642367-86642386 | Msa0962890:intron | 25.0% |
| ! | GAAACTTAGTGAATAATGTT+AGG | - | chr6_3:86642498-86642517 | Msa0962890:intron | 25.0% |
| ! | ACAGTATCAATATTCCAAAA+TGG | + | chr6_3:86642579-86642598 | None:intergenic | 25.0% |
| ! | TAAGTATTCCAATGAAGTAA+CGG | - | chr6_3:86642695-86642714 | Msa0962890:intron | 25.0% |
| ! | ATTGTTTCATTTGTTTCCAA+TGG | + | chr6_3:86642741-86642760 | None:intergenic | 25.0% |
| ! | TGAGTTTCATCAAATGTAAA+TGG | + | chr6_3:86642771-86642790 | None:intergenic | 25.0% |
| ! | ATTTGATGAAACTCATTTGA+AGG | - | chr6_3:86642776-86642795 | Msa0962890:intron | 25.0% |
| !! | TTCCTAACAATAATCCTTTT+CGG | - | chr6_3:86642799-86642818 | Msa0962890:intron | 25.0% |
| !! | AATAAATTTGGTTCAGAAAG+AGG | - | chr6_3:86642842-86642861 | Msa0962890:intron | 25.0% |
| ! | AAAGAAATCCAAGAAGAAAA+AGG | - | chr6_3:86643145-86643164 | Msa0962890:CDS | 25.0% |
| ! | AAGAAATCCAAGAAGAAAAA+GGG | - | chr6_3:86643146-86643165 | Msa0962890:CDS | 25.0% |
| AAACCTACGAACATATCAAA+TGG | - | chr6_3:86637967-86637986 | Msa0962890:CDS | 30.0% | |
| AACCTACGAACATATCAAAT+GGG | - | chr6_3:86637968-86637987 | Msa0962890:CDS | 30.0% | |
| ATATTGCAAAATCTTCAGGT+GGG | - | chr6_3:86638160-86638179 | Msa0962890:CDS | 30.0% | |
| CATATTCATGGCTTCATAAA+GGG | - | chr6_3:86638191-86638210 | Msa0962890:CDS | 30.0% | |
| ATATTCATGGCTTCATAAAG+GGG | - | chr6_3:86638192-86638211 | Msa0962890:CDS | 30.0% | |
| TGTAAGTAGAAAGTAAGTTG+TGG | - | chr6_3:86638323-86638342 | Msa0962890:CDS | 30.0% | |
| ! | GAACATGGTAGAAAAGTATA+TGG | - | chr6_3:86638385-86638404 | Msa0962890:CDS | 30.0% |
| GCATTGTAATGTGATTTGAT+TGG | - | chr6_3:86638702-86638721 | Msa0962890:intron | 30.0% | |
| TTGAGGTTAATTTCTATGCA+CGG | + | chr6_3:86638755-86638774 | None:intergenic | 30.0% | |
| TGGATCTATCAGTGAATTTA+AGG | - | chr6_3:86638989-86639008 | Msa0962890:intron | 30.0% | |
| AGATGTAATAGTCAAGTGTT+TGG | + | chr6_3:86639174-86639193 | None:intergenic | 30.0% | |
| ! | TTTAGCTTATTCGTGTAGTA+TGG | - | chr6_3:86639220-86639239 | Msa0962890:CDS | 30.0% |
| !! | TATTTTTCGTGATTTGGCAA+TGG | - | chr6_3:86639506-86639525 | Msa0962890:intron | 30.0% |
| CGATTAATTAGATGAATCCT+AGG | - | chr6_3:86639653-86639672 | Msa0962890:intron | 30.0% | |
| ! | AATTAGCTTATGAGCCATAA+CGG | + | chr6_3:86640055-86640074 | None:intergenic | 30.0% |
| TACAACAAACTCAATGTTCT+CGG | + | chr6_3:86640197-86640216 | None:intergenic | 30.0% | |
| GATAGTGATCTGTTAACATA+TGG | - | chr6_3:86640301-86640320 | Msa0962890:intron | 30.0% | |
| !!! | AATACGCAGTTGTTTTGAAT+AGG | - | chr6_3:86640422-86640441 | Msa0962890:intron | 30.0% |
| AAACGAAGGTTTACAAGATT+CGG | + | chr6_3:86640511-86640530 | None:intergenic | 30.0% | |
| !! | ATATCGAAACTTTGAAACGA+AGG | + | chr6_3:86640525-86640544 | None:intergenic | 30.0% |
| ! | TTCGATATGAAACTTTTCAC+AGG | - | chr6_3:86640537-86640556 | Msa0962890:intron | 30.0% |
| CTAAAACACACATACCTAAA+CGG | + | chr6_3:86640739-86640758 | None:intergenic | 30.0% | |
| ATATCAAGCAAGTGATTCTT+GGG | + | chr6_3:86640924-86640943 | None:intergenic | 30.0% | |
| TATATCAAGCAAGTGATTCT+TGG | + | chr6_3:86640925-86640944 | None:intergenic | 30.0% | |
| ATAATGACTTCAGGAAACAT+CGG | + | chr6_3:86641103-86641122 | None:intergenic | 30.0% | |
| ! | ATTAGTCTCATAATGACTTC+AGG | + | chr6_3:86641112-86641131 | None:intergenic | 30.0% |
| AGTCCAATAAATCAAGGATA+CGG | + | chr6_3:86641430-86641449 | None:intergenic | 30.0% | |
| !!! | GCTGTTTTTATAAGCTATGA+CGG | - | chr6_3:86641599-86641618 | Msa0962890:CDS | 30.0% |
| !!! | CTGTTTTTATAAGCTATGAC+GGG | - | chr6_3:86641600-86641619 | Msa0962890:CDS | 30.0% |
| !! | TGTTTTTATAAGCTATGACG+GGG | - | chr6_3:86641601-86641620 | Msa0962890:CDS | 30.0% |
| !! | TAAGCACTTTGAGATTGTTT+AGG | + | chr6_3:86641690-86641709 | None:intergenic | 30.0% |
| ! | ATTACATTTGGATTTGGTCA+AGG | + | chr6_3:86641803-86641822 | None:intergenic | 30.0% |
| ATTGCTTTGACTATAGTTGA+GGG | + | chr6_3:86641836-86641855 | None:intergenic | 30.0% | |
| TATTGCTTTGACTATAGTTG+AGG | + | chr6_3:86641837-86641856 | None:intergenic | 30.0% | |
| AAACTTGAATCCATCAACTA+AGG | - | chr6_3:86641865-86641884 | Msa0962890:CDS | 30.0% | |
| TTATCCTGTTTAAATGGTGT+AGG | + | chr6_3:86641977-86641996 | None:intergenic | 30.0% | |
| ATCCGTCCATAATATTTACA+CGG | - | chr6_3:86642434-86642453 | Msa0962890:intron | 30.0% | |
| TCTAGTCCGTGTAAATATTA+TGG | + | chr6_3:86642443-86642462 | None:intergenic | 30.0% | |
| CAATATTCCAAAATGGTATC+TGG | + | chr6_3:86642572-86642591 | None:intergenic | 30.0% | |
| !! | ATTTAATCCAGTTTCTAGCA+TGG | - | chr6_3:86642610-86642629 | Msa0962890:intron | 30.0% |
| ATCCGAAAAGGATTATTGTT+AGG | + | chr6_3:86642804-86642823 | None:intergenic | 30.0% | |
| !! | CTTTTCTTTGAGAGACTTAT+AGG | + | chr6_3:86642957-86642976 | None:intergenic | 30.0% |
| CTATAAGTCTCTCAAAGAAA+AGG | - | chr6_3:86642955-86642974 | Msa0962890:CDS | 30.0% | |
| TGATGCTTTATGCTTGAATA+TGG | - | chr6_3:86643055-86643074 | Msa0962890:intron | 30.0% | |
| ! | GAAGTGTAAAGTCTAAGATT+AGG | - | chr6_3:86643087-86643106 | Msa0962890:intron | 30.0% |
| !! | AGGAATAGTTCTGATTTGAA+AGG | - | chr6_3:86643107-86643126 | Msa0962890:CDS | 30.0% |
| AGAAATCCAAGAAGAAAAAG+GGG | - | chr6_3:86643147-86643166 | Msa0962890:CDS | 30.0% | |
| TTCCCATTTGATATGTTCGT+AGG | + | chr6_3:86637973-86637992 | None:intergenic | 35.0% | |
| ! | ATGTGAATTGGTTCAACGTA+AGG | + | chr6_3:86638022-86638041 | None:intergenic | 35.0% |
| CATATTGCAAAATCTTCAGG+TGG | - | chr6_3:86638159-86638178 | Msa0962890:CDS | 35.0% | |
| !! | TGGGTATTGATGCATATTCA+TGG | - | chr6_3:86638179-86638198 | Msa0962890:CDS | 35.0% |
| GCATATTCATGGCTTCATAA+AGG | - | chr6_3:86638190-86638209 | Msa0962890:CDS | 35.0% | |
| TATTCATGGCTTCATAAAGG+GGG | - | chr6_3:86638193-86638212 | Msa0962890:CDS | 35.0% | |
| GTGAAAAAACTTTACACCGT+CGG | + | chr6_3:86638427-86638446 | None:intergenic | 35.0% | |
| !!! | ACAACCTCTAGAATCACTTT+TGG | - | chr6_3:86639132-86639151 | Msa0962890:intron | 35.0% |
| ! | GTCTTGATTCTGATAGTGAA+AGG | - | chr6_3:86639249-86639268 | Msa0962890:CDS | 35.0% |
| ! | CTGATAGTGAAAGGAAATTG+CGG | - | chr6_3:86639258-86639277 | Msa0962890:CDS | 35.0% |
| !!! | ACACCAGTTGTTGTTTTTGA+TGG | - | chr6_3:86639332-86639351 | Msa0962890:intron | 35.0% |
| !! | GCTGTTTTCATAAATTGTCC+TGG | - | chr6_3:86639863-86639882 | Msa0962890:intron | 35.0% |
| AGTGAATATTACTCCCGTTA+TGG | - | chr6_3:86640038-86640057 | Msa0962890:intron | 35.0% | |
| ! | ATTAGCTTATGAGCCATAAC+GGG | + | chr6_3:86640054-86640073 | None:intergenic | 35.0% |
| TATGGCTCATAAGCTAATTC+AGG | - | chr6_3:86640056-86640075 | Msa0962890:intron | 35.0% | |
| TCTGCAACACAATTATACGA+AGG | + | chr6_3:86640165-86640184 | None:intergenic | 35.0% | |
| TCCAACCTTGAAACTGAAAA+AGG | - | chr6_3:86640253-86640272 | Msa0962890:intron | 35.0% | |
| AACCTTGAAACTGAAAAAGG+CGG | - | chr6_3:86640256-86640275 | Msa0962890:intron | 35.0% | |
| CGTATTACAATCCAAAACAC+AGG | + | chr6_3:86640408-86640427 | None:intergenic | 35.0% | |
| !!! | ATTTTTAAGATGGACCGTGA+CGG | - | chr6_3:86640447-86640466 | Msa0962890:intron | 35.0% |
| CGAAAGAATAGAGTTAGAGA+AGG | - | chr6_3:86640476-86640495 | Msa0962890:intron | 35.0% | |
| ! | TCAGCTTGTTCATCATTTCA+AGG | + | chr6_3:86640670-86640689 | None:intergenic | 35.0% |
| TGAACAAGCTGAAAGAAACT+AGG | - | chr6_3:86640678-86640697 | Msa0962890:CDS | 35.0% | |
| !!! | TTAGGTATGTGTGTTTTAGC+TGG | - | chr6_3:86640740-86640759 | Msa0962890:intron | 35.0% |
| ATTCCGATACTTCGAAACTA+GGG | + | chr6_3:86640816-86640835 | None:intergenic | 35.0% | |
| TATTCCGATACTTCGAAACT+AGG | + | chr6_3:86640817-86640836 | None:intergenic | 35.0% | |
| TATCAAGCAAGTGATTCTTG+GGG | + | chr6_3:86640923-86640942 | None:intergenic | 35.0% | |
| TCTTAGATGACATTCACCTT+TGG | - | chr6_3:86641007-86641026 | Msa0962890:intron | 35.0% | |
| TCTGTTCTTAAGCTTGAGAA+AGG | - | chr6_3:86641158-86641177 | Msa0962890:intron | 35.0% | |
| AAGGATTTGGCATAATCTTC+GGG | + | chr6_3:86641194-86641213 | None:intergenic | 35.0% | |
| GAAGGATTTGGCATAATCTT+CGG | + | chr6_3:86641195-86641214 | None:intergenic | 35.0% | |
| AGATTATGCCAAATCCTTCA+AGG | - | chr6_3:86641196-86641215 | Msa0962890:intron | 35.0% | |
| AGTGACTCAAGAAAACTTTC+CGG | + | chr6_3:86641382-86641401 | None:intergenic | 35.0% | |
| !!! | TGACGAAGACCTCAATTTTT+TGG | - | chr6_3:86641402-86641421 | Msa0962890:intron | 35.0% |
| !!! | GACGAAGACCTCAATTTTTT+GGG | - | chr6_3:86641403-86641422 | Msa0962890:intron | 35.0% |
| !!! | ACGAAGACCTCAATTTTTTG+GGG | - | chr6_3:86641404-86641423 | Msa0962890:intron | 35.0% |
| ATCACTTAAACGGTGTTTGA+TGG | + | chr6_3:86641514-86641533 | None:intergenic | 35.0% | |
| ATAGTCAAAGCAATAGCTGA+AGG | - | chr6_3:86641842-86641861 | Msa0962890:CDS | 35.0% | |
| AGTTCCTACACCATTTAAAC+AGG | - | chr6_3:86641970-86641989 | Msa0962890:intron | 35.0% | |
| GGTGAGATATGATTGAATCT+CGG | - | chr6_3:86642213-86642232 | Msa0962890:intron | 35.0% | |
| GTCCGTGTAAATATTATGGA+CGG | + | chr6_3:86642439-86642458 | None:intergenic | 35.0% | |
| ! | TTCGATTCCAGATACCATTT+TGG | - | chr6_3:86642562-86642581 | Msa0962890:intron | 35.0% |
| ATATTGATACTGTGCGAACT+AGG | - | chr6_3:86642586-86642605 | Msa0962890:intron | 35.0% | |
| ACATATACCATGCTAGAAAC+TGG | + | chr6_3:86642620-86642639 | None:intergenic | 35.0% | |
| ! | TCGTGTTTTCTTATCCGAAA+AGG | + | chr6_3:86642816-86642835 | None:intergenic | 35.0% |
| ! | TTTTCGGATAAGAAAACACG+AGG | - | chr6_3:86642815-86642834 | Msa0962890:intron | 35.0% |
| ACACGAGGAGGAAATAAATT+TGG | - | chr6_3:86642830-86642849 | Msa0962890:intron | 35.0% | |
| ! | AGTTCTGATTTGAAAGGAAG+TGG | - | chr6_3:86643113-86643132 | Msa0962890:CDS | 35.0% |
| !! | GGTTTTCGTTTCTGGGTTTT+GGG | + | chr6_3:86637952-86637971 | None:intergenic | 40.0% |
| !! | AGGTTTTCGTTTCTGGGTTT+TGG | + | chr6_3:86637953-86637972 | None:intergenic | 40.0% |
| ! | GTTCGTAGGTTTTCGTTTCT+GGG | + | chr6_3:86637959-86637978 | None:intergenic | 40.0% |
| ! | TGTTCGTAGGTTTTCGTTTC+TGG | + | chr6_3:86637960-86637979 | None:intergenic | 40.0% |
| GCGTAGTTCTTGATGTGAAT+TGG | + | chr6_3:86638034-86638053 | None:intergenic | 40.0% | |
| ATTCACATCAAGAACTACGC+TGG | - | chr6_3:86638034-86638053 | Msa0962890:CDS | 40.0% | |
| AGAGCCAAAAGTGATTCTAG+AGG | + | chr6_3:86639139-86639158 | None:intergenic | 40.0% | |
| TGCATAGAGTGAATCTGCTT+CGG | - | chr6_3:86639297-86639316 | Msa0962890:CDS | 40.0% | |
| CCACCATCAAAAACAACAAC+TGG | + | chr6_3:86639338-86639357 | None:intergenic | 40.0% | |
| !!! | CCAGTTGTTGTTTTTGATGG+TGG | - | chr6_3:86639335-86639354 | Msa0962890:intron | 40.0% |
| CAATGGCTAAGCTCAAAGAA+GGG | - | chr6_3:86639523-86639542 | Msa0962890:intron | 40.0% | |
| AAATTGTCCTGGAGAGCTTA+TGG | - | chr6_3:86639874-86639893 | Msa0962890:intron | 40.0% | |
| CTGCTCTCTACACAGAAATA+TGG | + | chr6_3:86640020-86640039 | None:intergenic | 40.0% | |
| AACTGAGCATCTGCTTCATA+TGG | + | chr6_3:86640223-86640242 | None:intergenic | 40.0% | |
| !!! | GCCTTTTTCAGTTTCAAGGT+TGG | + | chr6_3:86640257-86640276 | None:intergenic | 40.0% |
| TTTGGAGAAGTTCTTACAGC+TGG | + | chr6_3:86640331-86640350 | None:intergenic | 40.0% | |
| ! | GACGCACAAGATCATAGTTT+TGG | + | chr6_3:86640349-86640368 | None:intergenic | 40.0% |
| AGGACTTCTCGGAAATTGAA+AGG | + | chr6_3:86640388-86640407 | None:intergenic | 40.0% | |
| ATCCAAAACACAGGACTTCT+CGG | + | chr6_3:86640399-86640418 | None:intergenic | 40.0% | |
| !!! | TTTTTAAGATGGACCGTGAC+GGG | - | chr6_3:86640448-86640467 | Msa0962890:intron | 40.0% |
| ! | GATTTTCTTCCATCTGTTCC+TGG | - | chr6_3:86640767-86640786 | Msa0962890:intron | 40.0% |
| ATGCCCTAGTTTCGAAGTAT+CGG | - | chr6_3:86640810-86640829 | Msa0962890:intron | 40.0% | |
| ATCGATCGTGTAAGTACTTG+TGG | - | chr6_3:86640836-86640855 | Msa0962890:CDS | 40.0% | |
| AAGTGCATCCTTGAAGGATT+TGG | + | chr6_3:86641207-86641226 | None:intergenic | 40.0% | |
| TCAAGAAAACTTTCCGGAAG+AGG | + | chr6_3:86641376-86641395 | None:intergenic | 40.0% | |
| TGGATGCAACAAATGCAGAA+TGG | + | chr6_3:86641494-86641513 | None:intergenic | 40.0% | |
| TCAAAGGCTTCCTTAGTTGA+TGG | + | chr6_3:86641878-86641897 | None:intergenic | 40.0% | |
| !! | ACTTTTCCTGAGTTGACCAA+TGG | + | chr6_3:86641948-86641967 | None:intergenic | 40.0% |
| TCTCTTTATCTGCAGTGACA+AGG | - | chr6_3:86642658-86642677 | Msa0962890:intron | 40.0% | |
| TCAGAAACTGATCATGCCAT+TGG | - | chr6_3:86642722-86642741 | Msa0962890:intron | 40.0% | |
| GGTTCAGAAAGAGGAAACAA+TGG | - | chr6_3:86642851-86642870 | Msa0962890:intron | 40.0% | |
| AGTAGAAGTCACTGATGAAC+AGG | - | chr6_3:86643004-86643023 | Msa0962890:intron | 40.0% | |
| TGCTTGAATATGGAGTCACA+AGG | - | chr6_3:86643065-86643084 | Msa0962890:intron | 40.0% | |
| ! | TCTGATTTGAAAGGAAGTGG+TGG | - | chr6_3:86643116-86643135 | Msa0962890:CDS | 40.0% |
| ! | GTTACTCCCCTTTTTCTTCT+TGG | + | chr6_3:86643156-86643175 | None:intergenic | 40.0% |
| !! | TTCTCAGTTGCTGCTTTGCA+AGG | + | chr6_3:86639368-86639387 | None:intergenic | 45.0% |
| AAGCAGCAACTGAGAAAGAG+AGG | - | chr6_3:86639372-86639391 | Msa0962890:intron | 45.0% | |
| GCAATGGCTAAGCTCAAAGA+AGG | - | chr6_3:86639522-86639541 | Msa0962890:intron | 45.0% | |
| ! | TGCTGCTTCAGAACTCTTTC+AGG | - | chr6_3:86639554-86639573 | Msa0962890:intron | 45.0% |
| !!! | TGCCGCCTTTTTCAGTTTCA+AGG | + | chr6_3:86640261-86640280 | None:intergenic | 45.0% |
| AACTATGATCTTGTGCGTCG+AGG | - | chr6_3:86640350-86640369 | Msa0962890:CDS | 45.0% | |
| ! | TTCCGAGAAGTCCTGTGTTT+TGG | - | chr6_3:86640394-86640413 | Msa0962890:intron | 45.0% |
| !!! | TTTTTTCCCCCTCTCCGTTT+AGG | - | chr6_3:86640722-86640741 | Msa0962890:intron | 45.0% |
| ACACATACCTAAACGGAGAG+GGG | + | chr6_3:86640732-86640751 | None:intergenic | 45.0% | |
| CACACATACCTAAACGGAGA+GGG | + | chr6_3:86640733-86640752 | None:intergenic | 45.0% | |
| ACACACATACCTAAACGGAG+AGG | + | chr6_3:86640734-86640753 | None:intergenic | 45.0% | |
| CTTCCATCTGTTCCTGGAAT+TGG | - | chr6_3:86640773-86640792 | Msa0962890:intron | 45.0% | |
| ACACCAATTCCAGGAACAGA+TGG | + | chr6_3:86640779-86640798 | None:intergenic | 45.0% | |
| AGCAAGTGATTCTTGGGGAT+AGG | + | chr6_3:86640918-86640937 | None:intergenic | 45.0% | |
| AACAGCAAGTGCATCCTTGA+AGG | + | chr6_3:86641213-86641232 | None:intergenic | 45.0% | |
| CTTCATGTGCTTGAGCTCTT+TGG | + | chr6_3:86641353-86641372 | None:intergenic | 45.0% | |
| GATACGGCCCCAAAAAATTG+AGG | + | chr6_3:86641414-86641433 | None:intergenic | 45.0% | |
| GGGCCGTATCCTTGATTTAT+TGG | - | chr6_3:86641424-86641443 | Msa0962890:intron | 45.0% | |
| GCAACAAATGCAGAATGGAG+AGG | + | chr6_3:86641489-86641508 | None:intergenic | 45.0% | |
| !! | CTGAAGTGCCGTTACTTCAT+TGG | + | chr6_3:86642706-86642725 | None:intergenic | 45.0% |
| TCGGATAAGAAAACACGAGG+AGG | - | chr6_3:86642818-86642837 | Msa0962890:intron | 45.0% | |
| GTCACTGATGAACAGGTTTC+AGG | - | chr6_3:86643011-86643030 | Msa0962890:intron | 45.0% | |
| !!! | TTTATTTATTTTAAGTTTTA+AGG | - | chr6_3:86639407-86639426 | Msa0962890:intron | 5.0% |
| GACATGTCCATAAGCTCTCC+AGG | + | chr6_3:86639884-86639903 | None:intergenic | 50.0% | |
| TTCTTTCGCCATTCCCGTCA+CGG | + | chr6_3:86640464-86640483 | None:intergenic | 50.0% | |
| CACATACCTAAACGGAGAGG+GGG | + | chr6_3:86640731-86640750 | None:intergenic | 50.0% | |
| CACGTTGTGCACACACTACA+CGG | - | chr6_3:86640976-86640995 | Msa0962890:intron | 50.0% | |
| CAAGCACATGAAGCCTCTTC+CGG | - | chr6_3:86641360-86641379 | Msa0962890:intron | 50.0% | |
| TGGGGATCAATGGGGTGTAA+AGG | + | chr6_3:86641923-86641942 | None:intergenic | 50.0% | |
| GGTTTCAGGAGTGACTGAAG+TGG | - | chr6_3:86643025-86643044 | Msa0962890:intron | 50.0% | |
| ! | AAGATGGACCGTGACGGGAA+TGG | - | chr6_3:86640453-86640472 | Msa0962890:intron | 55.0% |
| GCTCGAGCAACACCAATTCC+AGG | + | chr6_3:86640788-86640807 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 86637943 | 86643211 | 86637943 | ID=Msa0962890;Name=Msa0962890 |
| chr6_3 | mRNA | 86637943 | 86643211 | 86637943 | ID=Msa0962890-mRNA-1;Parent=Msa0962890;Name=Msa0962890-mRNA-1;_AED=0.10;_eAED=0.10;_QI=43|0.81|0.75|1|1|1|12|0|579 |
| chr6_3 | exon | 86637943 | 86638581 | 86637943 | ID=Msa0962890-mRNA-1:exon:15668;Parent=Msa0962890-mRNA-1 |
| chr6_3 | exon | 86639184 | 86639328 | 86639184 | ID=Msa0962890-mRNA-1:exon:15667;Parent=Msa0962890-mRNA-1 |
| chr6_3 | exon | 86639726 | 86639818 | 86639726 | ID=Msa0962890-mRNA-1:exon:15666;Parent=Msa0962890-mRNA-1 |
| chr6_3 | exon | 86639905 | 86640002 | 86639905 | ID=Msa0962890-mRNA-1:exon:15665;Parent=Msa0962890-mRNA-1 |
| chr6_3 | exon | 86640310 | 86640395 | 86640310 | ID=Msa0962890-mRNA-1:exon:15664;Parent=Msa0962890-mRNA-1 |
| chr6_3 | exon | 86640596 | 86640710 | 86640596 | ID=Msa0962890-mRNA-1:exon:15663;Parent=Msa0962890-mRNA-1 |
| chr6_3 | exon | 86640821 | 86640970 | 86640821 | ID=Msa0962890-mRNA-1:exon:15662;Parent=Msa0962890-mRNA-1 |
| chr6_3 | exon | 86641077 | 86641121 | 86641077 | ID=Msa0962890-mRNA-1:exon:15661;Parent=Msa0962890-mRNA-1 |
| chr6_3 | exon | 86641579 | 86641657 | 86641579 | ID=Msa0962890-mRNA-1:exon:15660;Parent=Msa0962890-mRNA-1 |
| chr6_3 | exon | 86641755 | 86641929 | 86641755 | ID=Msa0962890-mRNA-1:exon:15659;Parent=Msa0962890-mRNA-1 |
| chr6_3 | exon | 86642940 | 86642976 | 86642940 | ID=Msa0962890-mRNA-1:exon:15658;Parent=Msa0962890-mRNA-1 |
| chr6_3 | exon | 86643091 | 86643211 | 86643091 | ID=Msa0962890-mRNA-1:exon:15657;Parent=Msa0962890-mRNA-1 |
| chr6_3 | five_prime_UTR | 86643169 | 86643211 | 86643169 | ID=Msa0962890-mRNA-1:five_prime_utr;Parent=Msa0962890-mRNA-1 |
| chr6_3 | CDS | 86643091 | 86643168 | 86643091 | ID=Msa0962890-mRNA-1:cds;Parent=Msa0962890-mRNA-1 |
| chr6_3 | CDS | 86642940 | 86642976 | 86642940 | ID=Msa0962890-mRNA-1:cds;Parent=Msa0962890-mRNA-1 |
| chr6_3 | CDS | 86641755 | 86641929 | 86641755 | ID=Msa0962890-mRNA-1:cds;Parent=Msa0962890-mRNA-1 |
| chr6_3 | CDS | 86641579 | 86641657 | 86641579 | ID=Msa0962890-mRNA-1:cds;Parent=Msa0962890-mRNA-1 |
| chr6_3 | CDS | 86641077 | 86641121 | 86641077 | ID=Msa0962890-mRNA-1:cds;Parent=Msa0962890-mRNA-1 |
| chr6_3 | CDS | 86640821 | 86640970 | 86640821 | ID=Msa0962890-mRNA-1:cds;Parent=Msa0962890-mRNA-1 |
| chr6_3 | CDS | 86640596 | 86640710 | 86640596 | ID=Msa0962890-mRNA-1:cds;Parent=Msa0962890-mRNA-1 |
| chr6_3 | CDS | 86640310 | 86640395 | 86640310 | ID=Msa0962890-mRNA-1:cds;Parent=Msa0962890-mRNA-1 |
| chr6_3 | CDS | 86639905 | 86640002 | 86639905 | ID=Msa0962890-mRNA-1:cds;Parent=Msa0962890-mRNA-1 |
| chr6_3 | CDS | 86639726 | 86639818 | 86639726 | ID=Msa0962890-mRNA-1:cds;Parent=Msa0962890-mRNA-1 |
| chr6_3 | CDS | 86639184 | 86639328 | 86639184 | ID=Msa0962890-mRNA-1:cds;Parent=Msa0962890-mRNA-1 |
| chr6_3 | CDS | 86637943 | 86638581 | 86637943 | ID=Msa0962890-mRNA-1:cds;Parent=Msa0962890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
