Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903580 | XP_003607050.1 | 97.248 | 327 | 9 | 0 | 1 | 327 | 45 | 371 | 0.0 | 670 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903580 | sp|O04536|GATL9_ARATH | 66.246 | 317 | 101 | 3 | 2 | 316 | 50 | 362 | 1.17e-157 | 449 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0870470 | Msa0903580 | 0.880378 | 5.765158e-70 | -8.615850e-47 |
| Msa0903580 | Msa0936150 | 0.851155 | 1.066620e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903580 | MtrunA17_Chr6g0451981 | 97.248 | 327 | 9 | 0 | 1 | 327 | 45 | 371 | 0.0 | 670 |
| Msa0903580 | MtrunA17_Chr5g0414981 | 67.089 | 316 | 101 | 2 | 3 | 318 | 63 | 375 | 1.22e-156 | 446 |
| Msa0903580 | MtrunA17_Chr7g0269751 | 63.057 | 314 | 103 | 4 | 3 | 316 | 51 | 351 | 8.69e-150 | 425 |
| Msa0903580 | MtrunA17_Chr3g0127611 | 58.280 | 314 | 116 | 4 | 3 | 316 | 34 | 332 | 2.74e-136 | 390 |
| Msa0903580 | MtrunA17_Chr1g0154521 | 58.438 | 320 | 121 | 4 | 2 | 315 | 45 | 358 | 6.74e-136 | 390 |
| Msa0903580 | MtrunA17_Chr8g0373671 | 56.230 | 313 | 132 | 2 | 3 | 315 | 29 | 336 | 2.40e-135 | 388 |
| Msa0903580 | MtrunA17_Chr7g0259321 | 56.522 | 322 | 119 | 4 | 1 | 322 | 49 | 349 | 3.06e-133 | 383 |
| Msa0903580 | MtrunA17_Chr3g0141321 | 57.643 | 314 | 120 | 3 | 2 | 315 | 31 | 331 | 1.39e-132 | 380 |
| Msa0903580 | MtrunA17_Chr5g0403501 | 53.704 | 324 | 137 | 2 | 3 | 315 | 37 | 358 | 2.83e-131 | 378 |
| Msa0903580 | MtrunA17_Chr1g0196511 | 57.716 | 324 | 113 | 6 | 3 | 326 | 54 | 353 | 3.48e-126 | 365 |
| Msa0903580 | MtrunA17_Chr4g0066331 | 53.968 | 315 | 126 | 5 | 3 | 316 | 42 | 338 | 1.29e-125 | 363 |
| Msa0903580 | MtrunA17_Chr8g0351091 | 28.105 | 306 | 180 | 10 | 20 | 295 | 287 | 582 | 4.09e-25 | 105 |
| Msa0903580 | MtrunA17_Chr2g0308241 | 34.239 | 184 | 109 | 6 | 121 | 302 | 340 | 513 | 4.53e-25 | 105 |
| Msa0903580 | MtrunA17_Chr4g0061711 | 33.333 | 201 | 122 | 7 | 121 | 320 | 340 | 529 | 1.14e-23 | 101 |
| Msa0903580 | MtrunA17_Chr8g0383241 | 25.857 | 321 | 196 | 12 | 1 | 295 | 157 | 461 | 1.71e-22 | 97.8 |
| Msa0903580 | MtrunA17_Chr2g0283461 | 31.401 | 207 | 124 | 7 | 121 | 327 | 339 | 527 | 6.38e-22 | 96.3 |
| Msa0903580 | MtrunA17_Chr3g0138381 | 25.914 | 301 | 183 | 8 | 28 | 298 | 348 | 638 | 2.32e-21 | 94.7 |
| Msa0903580 | MtrunA17_Chr7g0235161 | 30.500 | 200 | 124 | 7 | 102 | 295 | 340 | 530 | 4.45e-21 | 94.0 |
| Msa0903580 | MtrunA17_Chr7g0246371 | 25.075 | 335 | 200 | 11 | 20 | 324 | 341 | 654 | 1.98e-20 | 92.0 |
| Msa0903580 | MtrunA17_Chr7g0218571 | 29.282 | 181 | 115 | 6 | 121 | 295 | 334 | 507 | 3.55e-19 | 88.2 |
| Msa0903580 | MtrunA17_Chr4g0076011 | 29.808 | 208 | 121 | 8 | 121 | 313 | 261 | 458 | 4.24e-19 | 87.8 |
| Msa0903580 | MtrunA17_Chr2g0290961 | 31.461 | 178 | 108 | 5 | 121 | 295 | 471 | 637 | 8.69e-19 | 87.0 |
| Msa0903580 | MtrunA17_Chr6g0456071 | 27.826 | 230 | 148 | 8 | 76 | 295 | 304 | 525 | 1.05e-18 | 86.7 |
| Msa0903580 | MtrunA17_Chr2g0319311 | 30.151 | 199 | 123 | 8 | 121 | 313 | 338 | 526 | 2.42e-18 | 85.9 |
| Msa0903580 | MtrunA17_Chr3g0097091 | 24.834 | 302 | 186 | 12 | 28 | 295 | 206 | 500 | 5.07e-15 | 75.9 |
| Msa0903580 | MtrunA17_Chr7g0260711 | 24.571 | 175 | 127 | 3 | 121 | 295 | 455 | 624 | 8.24e-14 | 72.0 |
| Msa0903580 | MtrunA17_Chr6g0454101 | 30.201 | 149 | 96 | 4 | 151 | 295 | 358 | 502 | 8.71e-14 | 72.0 |
| Msa0903580 | MtrunA17_Chr2g0277591 | 23.209 | 349 | 190 | 14 | 9 | 327 | 203 | 503 | 7.47e-13 | 68.9 |
| Msa0903580 | MtrunA17_Chr7g0245621 | 31.325 | 166 | 93 | 9 | 151 | 313 | 483 | 630 | 1.08e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903580 | AT1G70090.1 | 66.246 | 317 | 101 | 3 | 2 | 316 | 50 | 362 | 1.19e-158 | 449 |
| Msa0903580 | AT1G70090.2 | 66.246 | 317 | 101 | 3 | 2 | 316 | 50 | 362 | 1.19e-158 | 449 |
| Msa0903580 | AT3G28340.1 | 63.950 | 319 | 107 | 4 | 5 | 322 | 44 | 355 | 2.71e-157 | 444 |
| Msa0903580 | AT1G24170.1 | 64.688 | 320 | 103 | 3 | 3 | 316 | 50 | 365 | 8.27e-155 | 439 |
| Msa0903580 | AT3G62660.1 | 64.241 | 316 | 100 | 4 | 1 | 316 | 54 | 356 | 4.35e-147 | 419 |
| Msa0903580 | AT4G02130.3 | 67.128 | 289 | 89 | 3 | 28 | 316 | 60 | 342 | 2.60e-145 | 414 |
| Msa0903580 | AT4G02130.1 | 67.128 | 289 | 89 | 3 | 28 | 316 | 60 | 342 | 2.60e-145 | 414 |
| Msa0903580 | AT4G02130.2 | 67.128 | 289 | 89 | 3 | 28 | 316 | 60 | 342 | 2.60e-145 | 414 |
| Msa0903580 | AT1G02720.1 | 61.587 | 315 | 109 | 6 | 3 | 316 | 54 | 357 | 5.31e-143 | 408 |
| Msa0903580 | AT1G02720.2 | 61.587 | 315 | 109 | 6 | 3 | 316 | 54 | 357 | 5.31e-143 | 408 |
| Msa0903580 | AT3G06260.1 | 58.917 | 314 | 112 | 7 | 3 | 316 | 46 | 342 | 1.04e-134 | 387 |
| Msa0903580 | AT3G50760.1 | 56.151 | 317 | 127 | 4 | 2 | 315 | 24 | 331 | 9.15e-131 | 376 |
| Msa0903580 | AT1G13250.1 | 58.599 | 314 | 122 | 4 | 3 | 316 | 31 | 336 | 5.24e-126 | 364 |
| Msa0903580 | AT1G19300.1 | 58.307 | 319 | 124 | 3 | 2 | 315 | 28 | 342 | 3.15e-122 | 355 |
| Msa0903580 | AT1G18580.1 | 28.522 | 291 | 165 | 11 | 43 | 302 | 237 | 515 | 1.56e-26 | 110 |
| Msa0903580 | AT4G38270.2 | 26.351 | 296 | 178 | 8 | 30 | 295 | 361 | 646 | 1.03e-22 | 99.4 |
| Msa0903580 | AT4G38270.1 | 26.351 | 296 | 178 | 8 | 30 | 295 | 365 | 650 | 1.15e-22 | 99.4 |
| Msa0903580 | AT3G61130.1 | 27.184 | 309 | 182 | 11 | 20 | 298 | 351 | 646 | 2.50e-22 | 98.2 |
| Msa0903580 | AT3G25140.1 | 29.851 | 201 | 124 | 6 | 102 | 295 | 339 | 529 | 8.31e-22 | 96.3 |
| Msa0903580 | AT5G47780.1 | 29.870 | 231 | 141 | 8 | 75 | 295 | 367 | 586 | 5.54e-21 | 94.0 |
| Msa0903580 | AT3G01040.1 | 29.101 | 189 | 123 | 6 | 121 | 303 | 296 | 479 | 4.37e-20 | 91.3 |
| Msa0903580 | AT3G01040.2 | 29.101 | 189 | 123 | 6 | 121 | 303 | 329 | 512 | 4.64e-20 | 91.3 |
| Msa0903580 | AT3G01040.3 | 29.101 | 189 | 123 | 6 | 121 | 303 | 329 | 512 | 4.64e-20 | 91.3 |
| Msa0903580 | AT5G15470.1 | 29.319 | 191 | 120 | 7 | 121 | 303 | 329 | 512 | 3.36e-19 | 88.6 |
| Msa0903580 | AT3G58790.2 | 25.890 | 309 | 180 | 12 | 28 | 295 | 78 | 378 | 5.61e-19 | 87.4 |
| Msa0903580 | AT5G54690.1 | 29.442 | 197 | 127 | 7 | 121 | 313 | 331 | 519 | 9.00e-19 | 87.4 |
| Msa0903580 | AT3G58790.1 | 29.442 | 197 | 128 | 7 | 121 | 313 | 336 | 525 | 1.16e-18 | 87.0 |
| Msa0903580 | AT3G02350.1 | 31.100 | 209 | 130 | 6 | 92 | 295 | 332 | 531 | 8.55e-18 | 84.3 |
| Msa0903580 | AT2G30575.1 | 26.855 | 283 | 183 | 9 | 24 | 295 | 311 | 580 | 9.66e-18 | 84.3 |
| Msa0903580 | AT2G46480.4 | 30.337 | 178 | 116 | 5 | 121 | 298 | 357 | 526 | 2.43e-17 | 83.2 |
| Msa0903580 | AT2G46480.3 | 30.337 | 178 | 116 | 5 | 121 | 298 | 344 | 513 | 2.47e-17 | 83.2 |
| Msa0903580 | AT1G06780.2 | 29.143 | 175 | 119 | 3 | 121 | 295 | 403 | 572 | 6.79e-17 | 82.0 |
| Msa0903580 | AT1G06780.1 | 29.143 | 175 | 119 | 3 | 121 | 295 | 390 | 559 | 7.77e-17 | 81.6 |
| Msa0903580 | AT2G20810.1 | 25.472 | 318 | 198 | 9 | 9 | 298 | 204 | 510 | 3.65e-16 | 79.7 |
Find 54 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATGATATTCAAGATTTA+TGG | 0.160378 | 6_2:-786413 | Msa0903580:CDS |
| ATATGGACATTCATTGATTT+AGG | 0.240908 | 6_2:-785896 | None:intergenic |
| TTTGCATATTTCTATATTCT+GGG | 0.317804 | 6_2:+786841 | None:intergenic |
| TATATGCCTCATGTGGGATA+TGG | 0.327711 | 6_2:-785913 | Msa0903580:CDS |
| GGATTATTTGAGAGGCTCTA+TGG | 0.341185 | 6_2:-786733 | Msa0903580:CDS |
| TTATTTCAACACTGGTGTTA+TGG | 0.341548 | 6_2:-786253 | Msa0903580:CDS |
| CTCCAATGCAACAAACTAAC+TGG | 0.353548 | 6_2:+786015 | None:intergenic |
| GTCCAGTTAGTTTGTTGCAT+TGG | 0.373467 | 6_2:-786017 | Msa0903580:CDS |
| CAACACTGGTGTTATGGTAA+TGG | 0.382349 | 6_2:-786247 | Msa0903580:CDS |
| TCAAGTGCTTGTCTTATTGA+AGG | 0.389187 | 6_2:+786528 | None:intergenic |
| TGTTGCATTGGAGTGGTAAA+GGG | 0.392680 | 6_2:-786005 | Msa0903580:CDS |
| ATATTTCAATGACTATTGAT+TGG | 0.393932 | 6_2:-786755 | Msa0903580:CDS |
| AGAATAAAGATGAGTTTACT+AGG | 0.399390 | 6_2:-786629 | Msa0903580:CDS |
| TATTTCAATGACTATTGATT+GGG | 0.406478 | 6_2:-786754 | Msa0903580:CDS |
| TTGAAGCTATTGAACATAGA+TGG | 0.411205 | 6_2:-786098 | Msa0903580:CDS |
| GAGTTTACTAGGATTGTTCA+TGG | 0.433334 | 6_2:-786618 | Msa0903580:CDS |
| TTGTTGCATTGGAGTGGTAA+AGG | 0.439311 | 6_2:-786006 | Msa0903580:CDS |
| TTATGGAAGGTTTCGTTGAC+CGG | 0.444509 | 6_2:-786396 | Msa0903580:CDS |
| TGGTGTTATGGTAATGGATT+TGG | 0.447326 | 6_2:-786241 | Msa0903580:CDS |
| AAATTTGCATGACAATATTC+CGG | 0.448533 | 6_2:+786354 | None:intergenic |
| ACACAAAGAAGATTGAGAAA+TGG | 0.449104 | 6_2:-786197 | Msa0903580:CDS |
| TGGTAATGGATTTGGTGAAA+TGG | 0.451691 | 6_2:-786233 | Msa0903580:CDS |
| TAAACTTTGAATTTCAATGA+AGG | 0.482539 | 6_2:+786588 | None:intergenic |
| TAACTTCTTGCATAATTCAA+AGG | 0.483151 | 6_2:+786501 | None:intergenic |
| TGAGGCATATAAAGATCATA+AGG | 0.488978 | 6_2:+785925 | None:intergenic |
| GTGAGAAGGGTTTATAAGCT+AGG | 0.493148 | 6_2:-786159 | Msa0903580:CDS |
| AGATGGAATCAACATGGTCT+TGG | 0.496429 | 6_2:-786081 | Msa0903580:CDS |
| GAAATGGATGGAAATTCAAA+AGG | 0.498984 | 6_2:-786181 | Msa0903580:CDS |
| GGAAATTCAAAAGGTGAGAA+GGG | 0.517101 | 6_2:-786172 | Msa0903580:CDS |
| TTGACCGGATCGAAGGTAAT+CGG | 0.520100 | 6_2:-786381 | Msa0903580:CDS |
| TTCATTTATGCAATTCAAAG+AGG | 0.525950 | 6_2:-786865 | None:intergenic |
| TTGCATATTTCTATATTCTG+GGG | 0.528277 | 6_2:+786842 | None:intergenic |
| ATTGCATCAAGTCTTCTCCA+TGG | 0.528733 | 6_2:+785979 | None:intergenic |
| TGGAAATTCAAAAGGTGAGA+AGG | 0.532785 | 6_2:-786173 | Msa0903580:CDS |
| ATTGATTGGGATTATTTGAG+AGG | 0.533333 | 6_2:-786741 | Msa0903580:CDS |
| TGATCTTTATATGCCTCATG+TGG | 0.542660 | 6_2:-785920 | Msa0903580:CDS |
| AGTTGTAGAAGTTTGCATCC+TGG | 0.544023 | 6_2:-786039 | Msa0903580:CDS |
| GGTTTCGTTGACCGGATCGA+AGG | 0.548154 | 6_2:-786388 | Msa0903580:CDS |
| AAAGAAGATTGAGAAATGGA+TGG | 0.561407 | 6_2:-786193 | Msa0903580:CDS |
| ATCGAAGGTAATCGGTGCAC+CGG | 0.567159 | 6_2:-786373 | Msa0903580:CDS |
| GTTAGTTTGTTGCATTGGAG+TGG | 0.575775 | 6_2:-786012 | Msa0903580:CDS |
| TGCAACAAACTAACTGGACC+AGG | 0.579188 | 6_2:+786021 | None:intergenic |
| TGGAATCAACATGGTCTTGG+TGG | 0.582134 | 6_2:-786078 | Msa0903580:CDS |
| ATTGAAATATGAACAAGTGA+AGG | 0.582765 | 6_2:+786768 | None:intergenic |
| AGGCCATGTTATTTCAACAC+TGG | 0.583969 | 6_2:-786261 | Msa0903580:CDS |
| TGCACCGATTACCTTCGATC+CGG | 0.596738 | 6_2:+786377 | None:intergenic |
| TGATATTCAAGATTTATGGA+AGG | 0.616697 | 6_2:-786409 | Msa0903580:CDS |
| GATCTTTATATGCCTCATGT+GGG | 0.625084 | 6_2:-785919 | Msa0903580:CDS |
| ACACCAGTGTTGAAATAACA+TGG | 0.629360 | 6_2:+786258 | None:intergenic |
| GAATGTCCATATCCCACATG+AGG | 0.644433 | 6_2:+785907 | None:intergenic |
| GATTTGGTGAAATGGAGAGA+AGG | 0.660269 | 6_2:-786225 | Msa0903580:CDS |
| GGAGTGGTAAAGGGAAACCA+TGG | 0.670933 | 6_2:-785996 | Msa0903580:CDS |
| ATTGTCATGCAAATTTCACA+AGG | 0.680182 | 6_2:-786347 | Msa0903580:CDS |
| GAACATAGATGGAATCAACA+TGG | 0.707717 | 6_2:-786087 | Msa0903580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAAAAAACAAATTCTT+AGG | + | chr6_2:786083-786102 | None:intergenic | 15.0% |
| !! | AAATGAAAAAACAAATTCTT+AGG | + | chr6_2:786083-786102 | None:intergenic | 15.0% |
| !!! | TTTGCATATTTCTATATTCT+GGG | + | chr6_2:785917-785936 | None:intergenic | 20.0% |
| !!! | TTTTGCATATTTCTATATTC+TGG | + | chr6_2:785918-785937 | None:intergenic | 20.0% |
| !! | ATATTTCAATGACTATTGAT+TGG | - | chr6_2:786000-786019 | Msa0903580:CDS | 20.0% |
| !!! | TATTTCAATGACTATTGATT+GGG | - | chr6_2:786001-786020 | Msa0903580:CDS | 20.0% |
| !! | TAAACTTTGAATTTCAATGA+AGG | + | chr6_2:786170-786189 | None:intergenic | 20.0% |
| !!! | TTGATGATATTCAAGATTTA+TGG | - | chr6_2:786342-786361 | Msa0903580:CDS | 20.0% |
| !! | TATTCAAAGGTAGAAAAAAT+AGG | - | chr6_2:786474-786493 | Msa0903580:CDS | 20.0% |
| !!! | TTTGCATATTTCTATATTCT+GGG | + | chr6_2:785917-785936 | None:intergenic | 20.0% |
| !!! | TTTTGCATATTTCTATATTC+TGG | + | chr6_2:785918-785937 | None:intergenic | 20.0% |
| !! | ATATTTCAATGACTATTGAT+TGG | - | chr6_2:786000-786019 | Msa0903580:CDS | 20.0% |
| !!! | TATTTCAATGACTATTGATT+GGG | - | chr6_2:786001-786020 | Msa0903580:CDS | 20.0% |
| !! | TAAACTTTGAATTTCAATGA+AGG | + | chr6_2:786170-786189 | None:intergenic | 20.0% |
| !!! | TTGATGATATTCAAGATTTA+TGG | - | chr6_2:786342-786361 | Msa0903580:CDS | 20.0% |
| !! | TATTCAAAGGTAGAAAAAAT+AGG | - | chr6_2:786474-786493 | Msa0903580:CDS | 20.0% |
| !! | TTGCATATTTCTATATTCTG+GGG | + | chr6_2:785916-785935 | None:intergenic | 25.0% |
| ! | ATTGAAATATGAACAAGTGA+AGG | + | chr6_2:785990-786009 | None:intergenic | 25.0% |
| ! | AGAATAAAGATGAGTTTACT+AGG | - | chr6_2:786126-786145 | Msa0903580:CDS | 25.0% |
| ! | TAACTTCTTGCATAATTCAA+AGG | + | chr6_2:786257-786276 | None:intergenic | 25.0% |
| ! | TGATATTCAAGATTTATGGA+AGG | - | chr6_2:786346-786365 | Msa0903580:CDS | 25.0% |
| ! | AAATTTGCATGACAATATTC+CGG | + | chr6_2:786404-786423 | None:intergenic | 25.0% |
| !! | TTGCATATTTCTATATTCTG+GGG | + | chr6_2:785916-785935 | None:intergenic | 25.0% |
| ! | ATTGAAATATGAACAAGTGA+AGG | + | chr6_2:785990-786009 | None:intergenic | 25.0% |
| ! | AGAATAAAGATGAGTTTACT+AGG | - | chr6_2:786126-786145 | Msa0903580:CDS | 25.0% |
| ! | TAACTTCTTGCATAATTCAA+AGG | + | chr6_2:786257-786276 | None:intergenic | 25.0% |
| ! | TGATATTCAAGATTTATGGA+AGG | - | chr6_2:786346-786365 | Msa0903580:CDS | 25.0% |
| ! | AAATTTGCATGACAATATTC+CGG | + | chr6_2:786404-786423 | None:intergenic | 25.0% |
| ATTGATTGGGATTATTTGAG+AGG | - | chr6_2:786014-786033 | Msa0903580:CDS | 30.0% | |
| ATTGTCATGCAAATTTCACA+AGG | - | chr6_2:786408-786427 | Msa0903580:CDS | 30.0% | |
| !!! | GGTATTTTAGCTATGAGTTT+TGG | - | chr6_2:786429-786448 | Msa0903580:CDS | 30.0% |
| ! | GTCAAGTTATGAATTTTCTG+AGG | - | chr6_2:786451-786470 | Msa0903580:CDS | 30.0% |
| !!! | GAATTTTCTGAGGTATTCAA+AGG | - | chr6_2:786461-786480 | Msa0903580:CDS | 30.0% |
| ! | TTATTTCAACACTGGTGTTA+TGG | - | chr6_2:786502-786521 | Msa0903580:CDS | 30.0% |
| ACACAAAGAAGATTGAGAAA+TGG | - | chr6_2:786558-786577 | Msa0903580:CDS | 30.0% | |
| AAAGAAGATTGAGAAATGGA+TGG | - | chr6_2:786562-786581 | Msa0903580:CDS | 30.0% | |
| GAAATGGATGGAAATTCAAA+AGG | - | chr6_2:786574-786593 | Msa0903580:CDS | 30.0% | |
| TTGAAGCTATTGAACATAGA+TGG | - | chr6_2:786657-786676 | Msa0903580:CDS | 30.0% | |
| CACAAAAAATCAACAGAACA+AGG | + | chr6_2:786806-786825 | None:intergenic | 30.0% | |
| !!! | CTTGTTCTGTTGATTTTTTG+TGG | - | chr6_2:786804-786823 | Msa0903580:CDS | 30.0% |
| TGAGGCATATAAAGATCATA+AGG | + | chr6_2:786833-786852 | None:intergenic | 30.0% | |
| ATTGATTGGGATTATTTGAG+AGG | - | chr6_2:786014-786033 | Msa0903580:CDS | 30.0% | |
| ATTGTCATGCAAATTTCACA+AGG | - | chr6_2:786408-786427 | Msa0903580:CDS | 30.0% | |
| !!! | GGTATTTTAGCTATGAGTTT+TGG | - | chr6_2:786429-786448 | Msa0903580:CDS | 30.0% |
| ! | GTCAAGTTATGAATTTTCTG+AGG | - | chr6_2:786451-786470 | Msa0903580:CDS | 30.0% |
| !!! | GAATTTTCTGAGGTATTCAA+AGG | - | chr6_2:786461-786480 | Msa0903580:CDS | 30.0% |
| ! | TTATTTCAACACTGGTGTTA+TGG | - | chr6_2:786502-786521 | Msa0903580:CDS | 30.0% |
| ACACAAAGAAGATTGAGAAA+TGG | - | chr6_2:786558-786577 | Msa0903580:CDS | 30.0% | |
| AAAGAAGATTGAGAAATGGA+TGG | - | chr6_2:786562-786581 | Msa0903580:CDS | 30.0% | |
| GAAATGGATGGAAATTCAAA+AGG | - | chr6_2:786574-786593 | Msa0903580:CDS | 30.0% | |
| TTGAAGCTATTGAACATAGA+TGG | - | chr6_2:786657-786676 | Msa0903580:CDS | 30.0% | |
| CACAAAAAATCAACAGAACA+AGG | + | chr6_2:786806-786825 | None:intergenic | 30.0% | |
| !!! | CTTGTTCTGTTGATTTTTTG+TGG | - | chr6_2:786804-786823 | Msa0903580:CDS | 30.0% |
| TGAGGCATATAAAGATCATA+AGG | + | chr6_2:786833-786852 | None:intergenic | 30.0% | |
| GAGTTTACTAGGATTGTTCA+TGG | - | chr6_2:786137-786156 | Msa0903580:CDS | 35.0% | |
| ! | TCAAGTGCTTGTCTTATTGA+AGG | + | chr6_2:786230-786249 | None:intergenic | 35.0% |
| ! | ACACCAGTGTTGAAATAACA+TGG | + | chr6_2:786500-786519 | None:intergenic | 35.0% |
| !! | TGGTGTTATGGTAATGGATT+TGG | - | chr6_2:786514-786533 | Msa0903580:CDS | 35.0% |
| !! | TGGTAATGGATTTGGTGAAA+TGG | - | chr6_2:786522-786541 | Msa0903580:CDS | 35.0% |
| TGGAAATTCAAAAGGTGAGA+AGG | - | chr6_2:786582-786601 | Msa0903580:CDS | 35.0% | |
| GGAAATTCAAAAGGTGAGAA+GGG | - | chr6_2:786583-786602 | Msa0903580:CDS | 35.0% | |
| !!! | ATCATTGCCTCCTTTTTTGA+TGG | - | chr6_2:786619-786638 | Msa0903580:CDS | 35.0% |
| CCAAAAACCATCAAAAAAGG+AGG | + | chr6_2:786629-786648 | None:intergenic | 35.0% | |
| !!! | CCTCCTTTTTTGATGGTTTT+TGG | - | chr6_2:786626-786645 | Msa0903580:CDS | 35.0% |
| CCACCAAAAACCATCAAAAA+AGG | + | chr6_2:786632-786651 | None:intergenic | 35.0% | |
| !!! | CCTTTTTTGATGGTTTTTGG+TGG | - | chr6_2:786629-786648 | Msa0903580:CDS | 35.0% |
| GAACATAGATGGAATCAACA+TGG | - | chr6_2:786668-786687 | Msa0903580:CDS | 35.0% | |
| TGATCTTTATATGCCTCATG+TGG | - | chr6_2:786835-786854 | Msa0903580:CDS | 35.0% | |
| GATCTTTATATGCCTCATGT+GGG | - | chr6_2:786836-786855 | Msa0903580:CDS | 35.0% | |
| GAGTTTACTAGGATTGTTCA+TGG | - | chr6_2:786137-786156 | Msa0903580:CDS | 35.0% | |
| ! | TCAAGTGCTTGTCTTATTGA+AGG | + | chr6_2:786230-786249 | None:intergenic | 35.0% |
| ! | ACACCAGTGTTGAAATAACA+TGG | + | chr6_2:786500-786519 | None:intergenic | 35.0% |
| !! | TGGTGTTATGGTAATGGATT+TGG | - | chr6_2:786514-786533 | Msa0903580:CDS | 35.0% |
| !! | TGGTAATGGATTTGGTGAAA+TGG | - | chr6_2:786522-786541 | Msa0903580:CDS | 35.0% |
| TGGAAATTCAAAAGGTGAGA+AGG | - | chr6_2:786582-786601 | Msa0903580:CDS | 35.0% | |
| GGAAATTCAAAAGGTGAGAA+GGG | - | chr6_2:786583-786602 | Msa0903580:CDS | 35.0% | |
| !!! | ATCATTGCCTCCTTTTTTGA+TGG | - | chr6_2:786619-786638 | Msa0903580:CDS | 35.0% |
| CCAAAAACCATCAAAAAAGG+AGG | + | chr6_2:786629-786648 | None:intergenic | 35.0% | |
| !!! | CCTCCTTTTTTGATGGTTTT+TGG | - | chr6_2:786626-786645 | Msa0903580:CDS | 35.0% |
| CCACCAAAAACCATCAAAAA+AGG | + | chr6_2:786632-786651 | None:intergenic | 35.0% | |
| !!! | CCTTTTTTGATGGTTTTTGG+TGG | - | chr6_2:786629-786648 | Msa0903580:CDS | 35.0% |
| GAACATAGATGGAATCAACA+TGG | - | chr6_2:786668-786687 | Msa0903580:CDS | 35.0% | |
| TGATCTTTATATGCCTCATG+TGG | - | chr6_2:786835-786854 | Msa0903580:CDS | 35.0% | |
| GATCTTTATATGCCTCATGT+GGG | - | chr6_2:786836-786855 | Msa0903580:CDS | 35.0% | |
| GGATTATTTGAGAGGCTCTA+TGG | - | chr6_2:786022-786041 | Msa0903580:CDS | 40.0% | |
| TTATGGAAGGTTTCGTTGAC+CGG | - | chr6_2:786359-786378 | Msa0903580:CDS | 40.0% | |
| !! | AGGCCATGTTATTTCAACAC+TGG | - | chr6_2:786494-786513 | Msa0903580:CDS | 40.0% |
| !! | CAACACTGGTGTTATGGTAA+TGG | - | chr6_2:786508-786527 | Msa0903580:CDS | 40.0% |
| !! | GATTTGGTGAAATGGAGAGA+AGG | - | chr6_2:786530-786549 | Msa0903580:CDS | 40.0% |
| GTGAGAAGGGTTTATAAGCT+AGG | - | chr6_2:786596-786615 | Msa0903580:CDS | 40.0% | |
| AGATGGAATCAACATGGTCT+TGG | - | chr6_2:786674-786693 | Msa0903580:CDS | 40.0% | |
| AGTTGTAGAAGTTTGCATCC+TGG | - | chr6_2:786716-786735 | Msa0903580:CDS | 40.0% | |
| !! | GTCCAGTTAGTTTGTTGCAT+TGG | - | chr6_2:786738-786757 | Msa0903580:CDS | 40.0% |
| CTCCAATGCAACAAACTAAC+TGG | + | chr6_2:786743-786762 | None:intergenic | 40.0% | |
| !! | GTTAGTTTGTTGCATTGGAG+TGG | - | chr6_2:786743-786762 | Msa0903580:CDS | 40.0% |
| TTGTTGCATTGGAGTGGTAA+AGG | - | chr6_2:786749-786768 | Msa0903580:CDS | 40.0% | |
| TGTTGCATTGGAGTGGTAAA+GGG | - | chr6_2:786750-786769 | Msa0903580:CDS | 40.0% | |
| ATTGCATCAAGTCTTCTCCA+TGG | + | chr6_2:786779-786798 | None:intergenic | 40.0% | |
| TATATGCCTCATGTGGGATA+TGG | - | chr6_2:786842-786861 | Msa0903580:CDS | 40.0% | |
| GGATTATTTGAGAGGCTCTA+TGG | - | chr6_2:786022-786041 | Msa0903580:CDS | 40.0% | |
| TTATGGAAGGTTTCGTTGAC+CGG | - | chr6_2:786359-786378 | Msa0903580:CDS | 40.0% | |
| !! | AGGCCATGTTATTTCAACAC+TGG | - | chr6_2:786494-786513 | Msa0903580:CDS | 40.0% |
| !! | CAACACTGGTGTTATGGTAA+TGG | - | chr6_2:786508-786527 | Msa0903580:CDS | 40.0% |
| !! | GATTTGGTGAAATGGAGAGA+AGG | - | chr6_2:786530-786549 | Msa0903580:CDS | 40.0% |
| GTGAGAAGGGTTTATAAGCT+AGG | - | chr6_2:786596-786615 | Msa0903580:CDS | 40.0% | |
| AGATGGAATCAACATGGTCT+TGG | - | chr6_2:786674-786693 | Msa0903580:CDS | 40.0% | |
| AGTTGTAGAAGTTTGCATCC+TGG | - | chr6_2:786716-786735 | Msa0903580:CDS | 40.0% | |
| !! | GTCCAGTTAGTTTGTTGCAT+TGG | - | chr6_2:786738-786757 | Msa0903580:CDS | 40.0% |
| CTCCAATGCAACAAACTAAC+TGG | + | chr6_2:786743-786762 | None:intergenic | 40.0% | |
| !! | GTTAGTTTGTTGCATTGGAG+TGG | - | chr6_2:786743-786762 | Msa0903580:CDS | 40.0% |
| TTGTTGCATTGGAGTGGTAA+AGG | - | chr6_2:786749-786768 | Msa0903580:CDS | 40.0% | |
| TGTTGCATTGGAGTGGTAAA+GGG | - | chr6_2:786750-786769 | Msa0903580:CDS | 40.0% | |
| ATTGCATCAAGTCTTCTCCA+TGG | + | chr6_2:786779-786798 | None:intergenic | 40.0% | |
| TATATGCCTCATGTGGGATA+TGG | - | chr6_2:786842-786861 | Msa0903580:CDS | 40.0% | |
| TTGACCGGATCGAAGGTAAT+CGG | - | chr6_2:786374-786393 | Msa0903580:CDS | 45.0% | |
| ! | TGGAATCAACATGGTCTTGG+TGG | - | chr6_2:786677-786696 | Msa0903580:CDS | 45.0% |
| TGCAACAAACTAACTGGACC+AGG | + | chr6_2:786737-786756 | None:intergenic | 45.0% | |
| GAATGTCCATATCCCACATG+AGG | + | chr6_2:786851-786870 | None:intergenic | 45.0% | |
| TTGACCGGATCGAAGGTAAT+CGG | - | chr6_2:786374-786393 | Msa0903580:CDS | 45.0% | |
| ! | TGGAATCAACATGGTCTTGG+TGG | - | chr6_2:786677-786696 | Msa0903580:CDS | 45.0% |
| TGCAACAAACTAACTGGACC+AGG | + | chr6_2:786737-786756 | None:intergenic | 45.0% | |
| GAATGTCCATATCCCACATG+AGG | + | chr6_2:786851-786870 | None:intergenic | 45.0% | |
| !! | TGCACCGATTACCTTCGATC+CGG | + | chr6_2:786381-786400 | None:intergenic | 50.0% |
| ATCGAAGGTAATCGGTGCAC+CGG | - | chr6_2:786382-786401 | Msa0903580:CDS | 50.0% | |
| GGAGTGGTAAAGGGAAACCA+TGG | - | chr6_2:786759-786778 | Msa0903580:CDS | 50.0% | |
| !! | TGCACCGATTACCTTCGATC+CGG | + | chr6_2:786381-786400 | None:intergenic | 50.0% |
| ATCGAAGGTAATCGGTGCAC+CGG | - | chr6_2:786382-786401 | Msa0903580:CDS | 50.0% | |
| GGAGTGGTAAAGGGAAACCA+TGG | - | chr6_2:786759-786778 | Msa0903580:CDS | 50.0% | |
| GGTTTCGTTGACCGGATCGA+AGG | - | chr6_2:786367-786386 | Msa0903580:CDS | 55.0% | |
| GGTTTCGTTGACCGGATCGA+AGG | - | chr6_2:786367-786386 | Msa0903580:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 785897 | 786880 | 785897 | ID=Msa0903580;Name=Msa0903580 |
| chr6_2 | mRNA | 785897 | 786880 | 785897 | ID=Msa0903580-mRNA-1;Parent=Msa0903580;Name=Msa0903580-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|-1|0|1|-1|1|1|0|327 |
| chr6_2 | exon | 785897 | 786880 | 785897 | ID=Msa0903580-mRNA-1:exon:357;Parent=Msa0903580-mRNA-1 |
| chr6_2 | CDS | 785897 | 786880 | 785897 | ID=Msa0903580-mRNA-1:cds;Parent=Msa0903580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
