Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936150 | XP_003607050.1 | 97.859 | 327 | 7 | 0 | 1 | 327 | 45 | 371 | 0.0 | 676 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936150 | sp|O04536|GATL9_ARATH | 65.931 | 317 | 102 | 3 | 2 | 316 | 50 | 362 | 5.80e-158 | 450 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0739540 | Msa0936150 | 0.824324 | 8.587069e-54 | -8.615850e-47 |
| Msa0860250 | Msa0936150 | 0.804058 | 2.591221e-49 | -8.615850e-47 |
| Msa0870470 | Msa0936150 | 0.895387 | 1.006342e-75 | -8.615850e-47 |
| Msa0903580 | Msa0936150 | 0.851155 | 1.066620e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936150 | MtrunA17_Chr6g0451981 | 97.859 | 327 | 7 | 0 | 1 | 327 | 45 | 371 | 0.0 | 676 |
| Msa0936150 | MtrunA17_Chr5g0414981 | 66.772 | 316 | 102 | 2 | 3 | 318 | 63 | 375 | 6.56e-157 | 446 |
| Msa0936150 | MtrunA17_Chr7g0269751 | 62.102 | 314 | 106 | 4 | 3 | 316 | 51 | 351 | 3.46e-148 | 421 |
| Msa0936150 | MtrunA17_Chr8g0373671 | 57.188 | 313 | 129 | 2 | 3 | 315 | 29 | 336 | 2.78e-137 | 393 |
| Msa0936150 | MtrunA17_Chr1g0154521 | 58.750 | 320 | 120 | 4 | 2 | 315 | 45 | 358 | 9.04e-137 | 392 |
| Msa0936150 | MtrunA17_Chr3g0127611 | 57.962 | 314 | 117 | 4 | 3 | 316 | 34 | 332 | 9.20e-137 | 391 |
| Msa0936150 | MtrunA17_Chr7g0259321 | 56.832 | 322 | 118 | 4 | 1 | 322 | 49 | 349 | 9.19e-134 | 384 |
| Msa0936150 | MtrunA17_Chr3g0141321 | 57.962 | 314 | 119 | 3 | 2 | 315 | 31 | 331 | 1.53e-133 | 383 |
| Msa0936150 | MtrunA17_Chr5g0403501 | 54.321 | 324 | 135 | 2 | 3 | 315 | 37 | 358 | 1.04e-132 | 382 |
| Msa0936150 | MtrunA17_Chr4g0066331 | 54.603 | 315 | 124 | 5 | 3 | 316 | 42 | 338 | 4.78e-127 | 367 |
| Msa0936150 | MtrunA17_Chr1g0196511 | 57.716 | 324 | 113 | 6 | 3 | 326 | 54 | 353 | 8.79e-127 | 367 |
| Msa0936150 | MtrunA17_Chr8g0351091 | 28.105 | 306 | 180 | 10 | 20 | 295 | 287 | 582 | 1.42e-25 | 107 |
| Msa0936150 | MtrunA17_Chr2g0308241 | 34.239 | 184 | 109 | 6 | 121 | 302 | 340 | 513 | 1.46e-25 | 107 |
| Msa0936150 | MtrunA17_Chr4g0061711 | 33.333 | 201 | 122 | 7 | 121 | 320 | 340 | 529 | 2.97e-24 | 103 |
| Msa0936150 | MtrunA17_Chr8g0383241 | 26.480 | 321 | 194 | 12 | 1 | 295 | 157 | 461 | 2.61e-23 | 100 |
| Msa0936150 | MtrunA17_Chr2g0283461 | 31.401 | 207 | 124 | 7 | 121 | 327 | 339 | 527 | 1.91e-22 | 97.8 |
| Msa0936150 | MtrunA17_Chr3g0138381 | 25.914 | 301 | 183 | 8 | 28 | 298 | 348 | 638 | 8.09e-22 | 96.3 |
| Msa0936150 | MtrunA17_Chr7g0235161 | 30.500 | 200 | 124 | 7 | 102 | 295 | 340 | 530 | 2.78e-21 | 94.4 |
| Msa0936150 | MtrunA17_Chr7g0246371 | 25.075 | 335 | 200 | 11 | 20 | 324 | 341 | 654 | 6.67e-21 | 93.6 |
| Msa0936150 | MtrunA17_Chr4g0076011 | 29.327 | 208 | 122 | 8 | 121 | 313 | 261 | 458 | 1.41e-19 | 89.0 |
| Msa0936150 | MtrunA17_Chr7g0218571 | 28.729 | 181 | 116 | 6 | 121 | 295 | 334 | 507 | 2.44e-19 | 88.6 |
| Msa0936150 | MtrunA17_Chr2g0290961 | 31.461 | 178 | 108 | 5 | 121 | 295 | 471 | 637 | 2.94e-19 | 88.6 |
| Msa0936150 | MtrunA17_Chr6g0456071 | 27.826 | 230 | 148 | 8 | 76 | 295 | 304 | 525 | 3.30e-19 | 88.2 |
| Msa0936150 | MtrunA17_Chr2g0319311 | 29.778 | 225 | 137 | 10 | 99 | 313 | 313 | 526 | 3.81e-19 | 88.2 |
| Msa0936150 | MtrunA17_Chr3g0097091 | 28.272 | 191 | 125 | 6 | 112 | 295 | 315 | 500 | 6.56e-15 | 75.5 |
| Msa0936150 | MtrunA17_Chr7g0260711 | 25.143 | 175 | 126 | 3 | 121 | 295 | 455 | 624 | 2.47e-14 | 73.9 |
| Msa0936150 | MtrunA17_Chr6g0454101 | 29.530 | 149 | 97 | 4 | 151 | 295 | 358 | 502 | 5.62e-14 | 72.4 |
| Msa0936150 | MtrunA17_Chr7g0245621 | 30.488 | 164 | 97 | 8 | 151 | 313 | 483 | 630 | 5.08e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936150 | AT1G70090.1 | 65.931 | 317 | 102 | 3 | 2 | 316 | 50 | 362 | 5.89e-159 | 450 |
| Msa0936150 | AT1G70090.2 | 65.931 | 317 | 102 | 3 | 2 | 316 | 50 | 362 | 5.89e-159 | 450 |
| Msa0936150 | AT3G28340.1 | 64.577 | 319 | 105 | 4 | 5 | 322 | 44 | 355 | 1.16e-158 | 448 |
| Msa0936150 | AT1G24170.1 | 64.375 | 320 | 104 | 3 | 3 | 316 | 50 | 365 | 4.44e-155 | 440 |
| Msa0936150 | AT3G62660.1 | 63.924 | 316 | 101 | 4 | 1 | 316 | 54 | 356 | 1.80e-147 | 419 |
| Msa0936150 | AT4G02130.3 | 66.782 | 289 | 90 | 3 | 28 | 316 | 60 | 342 | 4.40e-145 | 413 |
| Msa0936150 | AT4G02130.1 | 66.782 | 289 | 90 | 3 | 28 | 316 | 60 | 342 | 4.40e-145 | 413 |
| Msa0936150 | AT4G02130.2 | 66.782 | 289 | 90 | 3 | 28 | 316 | 60 | 342 | 4.40e-145 | 413 |
| Msa0936150 | AT1G02720.1 | 61.270 | 315 | 110 | 6 | 3 | 316 | 54 | 357 | 1.64e-141 | 404 |
| Msa0936150 | AT1G02720.2 | 61.270 | 315 | 110 | 6 | 3 | 316 | 54 | 357 | 1.64e-141 | 404 |
| Msa0936150 | AT3G06260.1 | 59.236 | 314 | 111 | 7 | 3 | 316 | 46 | 342 | 8.33e-136 | 390 |
| Msa0936150 | AT3G50760.1 | 56.467 | 317 | 126 | 4 | 2 | 315 | 24 | 331 | 1.06e-131 | 379 |
| Msa0936150 | AT1G13250.1 | 58.280 | 314 | 123 | 4 | 3 | 316 | 31 | 336 | 1.51e-126 | 366 |
| Msa0936150 | AT1G19300.1 | 58.934 | 319 | 122 | 3 | 2 | 315 | 28 | 342 | 1.00e-123 | 359 |
| Msa0936150 | AT1G18580.1 | 28.866 | 291 | 164 | 11 | 43 | 302 | 237 | 515 | 2.18e-27 | 112 |
| Msa0936150 | AT4G38270.1 | 26.351 | 296 | 178 | 8 | 30 | 295 | 365 | 650 | 3.76e-23 | 100 |
| Msa0936150 | AT4G38270.2 | 26.351 | 296 | 178 | 8 | 30 | 295 | 361 | 646 | 4.20e-23 | 100 |
| Msa0936150 | AT3G61130.1 | 27.184 | 309 | 182 | 11 | 20 | 298 | 351 | 646 | 1.94e-22 | 98.6 |
| Msa0936150 | AT3G25140.1 | 25.625 | 320 | 193 | 10 | 8 | 295 | 223 | 529 | 2.71e-22 | 97.8 |
| Msa0936150 | AT5G47780.1 | 33.143 | 175 | 109 | 5 | 121 | 295 | 420 | 586 | 2.14e-21 | 95.5 |
| Msa0936150 | AT3G01040.1 | 28.571 | 189 | 124 | 6 | 121 | 303 | 296 | 479 | 2.94e-20 | 91.7 |
| Msa0936150 | AT3G01040.2 | 28.571 | 189 | 124 | 6 | 121 | 303 | 329 | 512 | 3.22e-20 | 91.7 |
| Msa0936150 | AT3G01040.3 | 28.571 | 189 | 124 | 6 | 121 | 303 | 329 | 512 | 3.22e-20 | 91.7 |
| Msa0936150 | AT5G15470.1 | 28.796 | 191 | 121 | 7 | 121 | 303 | 329 | 512 | 2.64e-19 | 89.0 |
| Msa0936150 | AT5G54690.1 | 28.934 | 197 | 128 | 7 | 121 | 313 | 331 | 519 | 3.61e-19 | 88.6 |
| Msa0936150 | AT3G58790.2 | 29.050 | 179 | 119 | 5 | 121 | 295 | 204 | 378 | 5.66e-19 | 87.4 |
| Msa0936150 | AT3G58790.1 | 29.050 | 179 | 119 | 5 | 121 | 295 | 336 | 510 | 1.03e-18 | 87.0 |
| Msa0936150 | AT3G02350.1 | 31.100 | 209 | 130 | 6 | 92 | 295 | 332 | 531 | 3.32e-18 | 85.9 |
| Msa0936150 | AT2G30575.1 | 26.855 | 283 | 183 | 9 | 24 | 295 | 311 | 580 | 7.81e-18 | 84.7 |
| Msa0936150 | AT2G46480.4 | 30.337 | 178 | 116 | 5 | 121 | 298 | 357 | 526 | 1.98e-17 | 83.6 |
| Msa0936150 | AT2G46480.3 | 30.337 | 178 | 116 | 5 | 121 | 298 | 344 | 513 | 2.23e-17 | 83.2 |
| Msa0936150 | AT1G06780.2 | 29.143 | 175 | 119 | 3 | 121 | 295 | 403 | 572 | 2.77e-17 | 83.2 |
| Msa0936150 | AT1G06780.1 | 29.143 | 175 | 119 | 3 | 121 | 295 | 390 | 559 | 3.64e-17 | 82.8 |
| Msa0936150 | AT2G20810.1 | 25.472 | 318 | 198 | 9 | 9 | 298 | 204 | 510 | 6.55e-17 | 81.6 |
Find 52 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATGATATTCAAGATTTA+TGG | 0.160378 | 6_3:-6806705 | Msa0936150:CDS |
| ATATGGACATTCATTGATTT+AGG | 0.240908 | 6_3:-6806188 | None:intergenic |
| GGATTATTTGAGAGGCTCTA+TGG | 0.341185 | 6_3:-6807025 | Msa0936150:CDS |
| TATATGCCACATGTGGGATA+TGG | 0.346257 | 6_3:-6806205 | Msa0936150:CDS |
| TGTTACATTGGAGTGGTAAA+GGG | 0.388590 | 6_3:-6806297 | Msa0936150:CDS |
| TCAAGTGCTTGTCTTATTGA+AGG | 0.389187 | 6_3:+6806820 | None:intergenic |
| ATATTTCAATGACTATTGAT+TGG | 0.393932 | 6_3:-6807047 | Msa0936150:CDS |
| CTCCAATGTAACAAACTAAC+AGG | 0.395838 | 6_3:+6806307 | None:intergenic |
| TTGAAGCTATTGAACATAGA+TGG | 0.398424 | 6_3:-6806390 | Msa0936150:CDS |
| AGAATAAAGATGAGTTTACT+AGG | 0.399390 | 6_3:-6806921 | Msa0936150:CDS |
| TATTTCAATGACTATTGATT+GGG | 0.406478 | 6_3:-6807046 | Msa0936150:CDS |
| GAAAGAAGGGTTTATAAGCT+TGG | 0.417792 | 6_3:-6806451 | Msa0936150:CDS |
| TTGTTACATTGGAGTGGTAA+AGG | 0.425011 | 6_3:-6806298 | Msa0936150:CDS |
| TGGAAATTCAAAAGGAAAGA+AGG | 0.426804 | 6_3:-6806465 | Msa0936150:CDS |
| GTCCTGTTAGTTTGTTACAT+TGG | 0.430690 | 6_3:-6806309 | Msa0936150:CDS |
| GAGTTTACTAGGATTGTTCA+TGG | 0.433334 | 6_3:-6806910 | Msa0936150:CDS |
| TTATGGAAGGTTTCGTTGAC+CGG | 0.444509 | 6_3:-6806688 | Msa0936150:CDS |
| AAATTTGCATGACAATATTC+CGG | 0.448533 | 6_3:+6806646 | None:intergenic |
| ACACAAAGAAGATTGAGAAA+TGG | 0.449104 | 6_3:-6806489 | Msa0936150:CDS |
| TGGTAATGGATTTGGTGAAA+TGG | 0.449678 | 6_3:-6806525 | Msa0936150:CDS |
| CAACACTGGTGTGATGGTAA+TGG | 0.479656 | 6_3:-6806539 | Msa0936150:CDS |
| TAAACTTTGAATTTCAATGA+AGG | 0.482539 | 6_3:+6806880 | None:intergenic |
| TAACTTCTTGCATAATTCAA+AGG | 0.483151 | 6_3:+6806793 | None:intergenic |
| GGAAATTCAAAAGGAAAGAA+GGG | 0.486528 | 6_3:-6806464 | Msa0936150:CDS |
| TGTGGCATATAAAGATCATA+AGG | 0.488978 | 6_3:+6806217 | None:intergenic |
| GAAATGGATGGAAATTCAAA+AGG | 0.490105 | 6_3:-6806473 | Msa0936150:CDS |
| TGGTGTGATGGTAATGGATT+TGG | 0.491814 | 6_3:-6806533 | Msa0936150:CDS |
| AGATGGAATCAACATGGTCT+TGG | 0.496429 | 6_3:-6806373 | Msa0936150:CDS |
| TTGACCGGATCGAAGGTAAT+CGG | 0.520100 | 6_3:-6806673 | Msa0936150:CDS |
| TTCATTTATGCAATTCAAAG+AGG | 0.525950 | 6_3:-6807157 | None:intergenic |
| ATTGCATCAAGTCTTCTCCA+TGG | 0.528733 | 6_3:+6806271 | None:intergenic |
| ATTGATTGGGATTATTTGAG+AGG | 0.533333 | 6_3:-6807033 | Msa0936150:CDS |
| AGTTGTAGAAGTTTGCATCC+TGG | 0.544023 | 6_3:-6806331 | Msa0936150:CDS |
| GGTTTCGTTGACCGGATCGA+AGG | 0.548154 | 6_3:-6806680 | Msa0936150:CDS |
| TGATCTTTATATGCCACATG+TGG | 0.551988 | 6_3:-6806212 | Msa0936150:CDS |
| GTTAGTTTGTTACATTGGAG+TGG | 0.559019 | 6_3:-6806304 | Msa0936150:CDS |
| AAAGAAGATTGAGAAATGGA+TGG | 0.561407 | 6_3:-6806485 | Msa0936150:CDS |
| ATCGAAGGTAATCGGTGCAC+CGG | 0.567159 | 6_3:-6806665 | Msa0936150:CDS |
| TGGAATCAACATGGTCTTGG+TGG | 0.582134 | 6_3:-6806370 | Msa0936150:CDS |
| ATTGAAATATGAACAAGTGA+AGG | 0.582765 | 6_3:+6807060 | None:intergenic |
| AGGCCATGTTATTTCAACAC+TGG | 0.583969 | 6_3:-6806553 | Msa0936150:CDS |
| TGCACCGATTACCTTCGATC+CGG | 0.596738 | 6_3:+6806669 | None:intergenic |
| TGTAACAAACTAACAGGACC+AGG | 0.614863 | 6_3:+6806313 | None:intergenic |
| TGATATTCAAGATTTATGGA+AGG | 0.616697 | 6_3:-6806701 | Msa0936150:CDS |
| TTATTTCAACACTGGTGTGA+TGG | 0.626622 | 6_3:-6806545 | Msa0936150:CDS |
| GATCTTTATATGCCACATGT+GGG | 0.628148 | 6_3:-6806211 | Msa0936150:CDS |
| ACACCAGTGTTGAAATAACA+TGG | 0.646753 | 6_3:+6806550 | None:intergenic |
| GAATGTCCATATCCCACATG+TGG | 0.651257 | 6_3:+6806199 | None:intergenic |
| GATTTGGTGAAATGGAGAGA+AGG | 0.660269 | 6_3:-6806517 | Msa0936150:CDS |
| GGAGTGGTAAAGGGAAACCA+TGG | 0.670933 | 6_3:-6806288 | Msa0936150:CDS |
| ATTGTCATGCAAATTTCACA+AGG | 0.680182 | 6_3:-6806639 | Msa0936150:CDS |
| GAACATAGATGGAATCAACA+TGG | 0.707717 | 6_3:-6806379 | Msa0936150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAAAAAACAAATTCTT+AGG | + | chr6_3:6806375-6806394 | None:intergenic | 15.0% |
| !! | AAATGAAAAAACAAATTCTT+AGG | + | chr6_3:6806375-6806394 | None:intergenic | 15.0% |
| !!! | TTTTGCATATTTCTATATTC+TGG | + | chr6_3:6806210-6806229 | None:intergenic | 20.0% |
| !! | ATATTTCAATGACTATTGAT+TGG | - | chr6_3:6806292-6806311 | Msa0936150:CDS | 20.0% |
| !!! | TATTTCAATGACTATTGATT+GGG | - | chr6_3:6806293-6806312 | Msa0936150:CDS | 20.0% |
| !! | TAAACTTTGAATTTCAATGA+AGG | + | chr6_3:6806462-6806481 | None:intergenic | 20.0% |
| !!! | TTGATGATATTCAAGATTTA+TGG | - | chr6_3:6806634-6806653 | Msa0936150:CDS | 20.0% |
| !! | TATTCAAAGGTAGAAAAAAT+AGG | - | chr6_3:6806766-6806785 | Msa0936150:CDS | 20.0% |
| !!! | TTTTGCATATTTCTATATTC+TGG | + | chr6_3:6806210-6806229 | None:intergenic | 20.0% |
| !! | ATATTTCAATGACTATTGAT+TGG | - | chr6_3:6806292-6806311 | Msa0936150:CDS | 20.0% |
| !!! | TATTTCAATGACTATTGATT+GGG | - | chr6_3:6806293-6806312 | Msa0936150:CDS | 20.0% |
| !! | TAAACTTTGAATTTCAATGA+AGG | + | chr6_3:6806462-6806481 | None:intergenic | 20.0% |
| !!! | TTGATGATATTCAAGATTTA+TGG | - | chr6_3:6806634-6806653 | Msa0936150:CDS | 20.0% |
| !! | TATTCAAAGGTAGAAAAAAT+AGG | - | chr6_3:6806766-6806785 | Msa0936150:CDS | 20.0% |
| ! | ATTGAAATATGAACAAGTGA+AGG | + | chr6_3:6806282-6806301 | None:intergenic | 25.0% |
| ! | AGAATAAAGATGAGTTTACT+AGG | - | chr6_3:6806418-6806437 | Msa0936150:CDS | 25.0% |
| ! | TAACTTCTTGCATAATTCAA+AGG | + | chr6_3:6806549-6806568 | None:intergenic | 25.0% |
| ! | TGATATTCAAGATTTATGGA+AGG | - | chr6_3:6806638-6806657 | Msa0936150:CDS | 25.0% |
| ! | AAATTTGCATGACAATATTC+CGG | + | chr6_3:6806696-6806715 | None:intergenic | 25.0% |
| ! | ATTGAAATATGAACAAGTGA+AGG | + | chr6_3:6806282-6806301 | None:intergenic | 25.0% |
| ! | AGAATAAAGATGAGTTTACT+AGG | - | chr6_3:6806418-6806437 | Msa0936150:CDS | 25.0% |
| ! | TAACTTCTTGCATAATTCAA+AGG | + | chr6_3:6806549-6806568 | None:intergenic | 25.0% |
| ! | TGATATTCAAGATTTATGGA+AGG | - | chr6_3:6806638-6806657 | Msa0936150:CDS | 25.0% |
| ! | AAATTTGCATGACAATATTC+CGG | + | chr6_3:6806696-6806715 | None:intergenic | 25.0% |
| ATTGATTGGGATTATTTGAG+AGG | - | chr6_3:6806306-6806325 | Msa0936150:CDS | 30.0% | |
| ATTGTCATGCAAATTTCACA+AGG | - | chr6_3:6806700-6806719 | Msa0936150:CDS | 30.0% | |
| !!! | GGTATTTTAGCTATGAGTTT+TGG | - | chr6_3:6806721-6806740 | Msa0936150:CDS | 30.0% |
| ! | GTCAAGTTATGAATTTTCTG+AGG | - | chr6_3:6806743-6806762 | Msa0936150:CDS | 30.0% |
| !!! | GAATTTTCTGAGGTATTCAA+AGG | - | chr6_3:6806753-6806772 | Msa0936150:CDS | 30.0% |
| ACACAAAGAAGATTGAGAAA+TGG | - | chr6_3:6806850-6806869 | Msa0936150:CDS | 30.0% | |
| AAAGAAGATTGAGAAATGGA+TGG | - | chr6_3:6806854-6806873 | Msa0936150:CDS | 30.0% | |
| GAAATGGATGGAAATTCAAA+AGG | - | chr6_3:6806866-6806885 | Msa0936150:CDS | 30.0% | |
| TGGAAATTCAAAAGGAAAGA+AGG | - | chr6_3:6806874-6806893 | Msa0936150:CDS | 30.0% | |
| GGAAATTCAAAAGGAAAGAA+GGG | - | chr6_3:6806875-6806894 | Msa0936150:CDS | 30.0% | |
| !!! | ATCATTACCTCCTTTTTTGA+TGG | - | chr6_3:6806911-6806930 | Msa0936150:CDS | 30.0% |
| TTGAAGCTATTGAACATAGA+TGG | - | chr6_3:6806949-6806968 | Msa0936150:CDS | 30.0% | |
| CACAAAAAATCAACAGAACA+AGG | + | chr6_3:6807098-6807117 | None:intergenic | 30.0% | |
| !!! | CTTGTTCTGTTGATTTTTTG+TGG | - | chr6_3:6807096-6807115 | Msa0936150:CDS | 30.0% |
| TGTGGCATATAAAGATCATA+AGG | + | chr6_3:6807125-6807144 | None:intergenic | 30.0% | |
| ATTGATTGGGATTATTTGAG+AGG | - | chr6_3:6806306-6806325 | Msa0936150:CDS | 30.0% | |
| ATTGTCATGCAAATTTCACA+AGG | - | chr6_3:6806700-6806719 | Msa0936150:CDS | 30.0% | |
| !!! | GGTATTTTAGCTATGAGTTT+TGG | - | chr6_3:6806721-6806740 | Msa0936150:CDS | 30.0% |
| ! | GTCAAGTTATGAATTTTCTG+AGG | - | chr6_3:6806743-6806762 | Msa0936150:CDS | 30.0% |
| !!! | GAATTTTCTGAGGTATTCAA+AGG | - | chr6_3:6806753-6806772 | Msa0936150:CDS | 30.0% |
| ACACAAAGAAGATTGAGAAA+TGG | - | chr6_3:6806850-6806869 | Msa0936150:CDS | 30.0% | |
| AAAGAAGATTGAGAAATGGA+TGG | - | chr6_3:6806854-6806873 | Msa0936150:CDS | 30.0% | |
| GAAATGGATGGAAATTCAAA+AGG | - | chr6_3:6806866-6806885 | Msa0936150:CDS | 30.0% | |
| TGGAAATTCAAAAGGAAAGA+AGG | - | chr6_3:6806874-6806893 | Msa0936150:CDS | 30.0% | |
| GGAAATTCAAAAGGAAAGAA+GGG | - | chr6_3:6806875-6806894 | Msa0936150:CDS | 30.0% | |
| !!! | ATCATTACCTCCTTTTTTGA+TGG | - | chr6_3:6806911-6806930 | Msa0936150:CDS | 30.0% |
| TTGAAGCTATTGAACATAGA+TGG | - | chr6_3:6806949-6806968 | Msa0936150:CDS | 30.0% | |
| CACAAAAAATCAACAGAACA+AGG | + | chr6_3:6807098-6807117 | None:intergenic | 30.0% | |
| !!! | CTTGTTCTGTTGATTTTTTG+TGG | - | chr6_3:6807096-6807115 | Msa0936150:CDS | 30.0% |
| TGTGGCATATAAAGATCATA+AGG | + | chr6_3:6807125-6807144 | None:intergenic | 30.0% | |
| GAGTTTACTAGGATTGTTCA+TGG | - | chr6_3:6806429-6806448 | Msa0936150:CDS | 35.0% | |
| ! | TCAAGTGCTTGTCTTATTGA+AGG | + | chr6_3:6806522-6806541 | None:intergenic | 35.0% |
| ! | ACACCAGTGTTGAAATAACA+TGG | + | chr6_3:6806792-6806811 | None:intergenic | 35.0% |
| TTATTTCAACACTGGTGTGA+TGG | - | chr6_3:6806794-6806813 | Msa0936150:CDS | 35.0% | |
| !! | TGGTAATGGATTTGGTGAAA+TGG | - | chr6_3:6806814-6806833 | Msa0936150:CDS | 35.0% |
| GAAAGAAGGGTTTATAAGCT+TGG | - | chr6_3:6806888-6806907 | Msa0936150:CDS | 35.0% | |
| CCAAAAACCATCAAAAAAGG+AGG | + | chr6_3:6806921-6806940 | None:intergenic | 35.0% | |
| !!! | CCTCCTTTTTTGATGGTTTT+TGG | - | chr6_3:6806918-6806937 | Msa0936150:CDS | 35.0% |
| CCACCAAAAACCATCAAAAA+AGG | + | chr6_3:6806924-6806943 | None:intergenic | 35.0% | |
| !!! | CCTTTTTTGATGGTTTTTGG+TGG | - | chr6_3:6806921-6806940 | Msa0936150:CDS | 35.0% |
| GAACATAGATGGAATCAACA+TGG | - | chr6_3:6806960-6806979 | Msa0936150:CDS | 35.0% | |
| !! | GTCCTGTTAGTTTGTTACAT+TGG | - | chr6_3:6807030-6807049 | Msa0936150:CDS | 35.0% |
| CTCCAATGTAACAAACTAAC+AGG | + | chr6_3:6807035-6807054 | None:intergenic | 35.0% | |
| !! | GTTAGTTTGTTACATTGGAG+TGG | - | chr6_3:6807035-6807054 | Msa0936150:CDS | 35.0% |
| TTGTTACATTGGAGTGGTAA+AGG | - | chr6_3:6807041-6807060 | Msa0936150:CDS | 35.0% | |
| TGTTACATTGGAGTGGTAAA+GGG | - | chr6_3:6807042-6807061 | Msa0936150:CDS | 35.0% | |
| TGATCTTTATATGCCACATG+TGG | - | chr6_3:6807127-6807146 | Msa0936150:CDS | 35.0% | |
| GATCTTTATATGCCACATGT+GGG | - | chr6_3:6807128-6807147 | Msa0936150:CDS | 35.0% | |
| GAGTTTACTAGGATTGTTCA+TGG | - | chr6_3:6806429-6806448 | Msa0936150:CDS | 35.0% | |
| ! | TCAAGTGCTTGTCTTATTGA+AGG | + | chr6_3:6806522-6806541 | None:intergenic | 35.0% |
| ! | ACACCAGTGTTGAAATAACA+TGG | + | chr6_3:6806792-6806811 | None:intergenic | 35.0% |
| TTATTTCAACACTGGTGTGA+TGG | - | chr6_3:6806794-6806813 | Msa0936150:CDS | 35.0% | |
| !! | TGGTAATGGATTTGGTGAAA+TGG | - | chr6_3:6806814-6806833 | Msa0936150:CDS | 35.0% |
| GAAAGAAGGGTTTATAAGCT+TGG | - | chr6_3:6806888-6806907 | Msa0936150:CDS | 35.0% | |
| CCAAAAACCATCAAAAAAGG+AGG | + | chr6_3:6806921-6806940 | None:intergenic | 35.0% | |
| !!! | CCTCCTTTTTTGATGGTTTT+TGG | - | chr6_3:6806918-6806937 | Msa0936150:CDS | 35.0% |
| CCACCAAAAACCATCAAAAA+AGG | + | chr6_3:6806924-6806943 | None:intergenic | 35.0% | |
| !!! | CCTTTTTTGATGGTTTTTGG+TGG | - | chr6_3:6806921-6806940 | Msa0936150:CDS | 35.0% |
| GAACATAGATGGAATCAACA+TGG | - | chr6_3:6806960-6806979 | Msa0936150:CDS | 35.0% | |
| !! | GTCCTGTTAGTTTGTTACAT+TGG | - | chr6_3:6807030-6807049 | Msa0936150:CDS | 35.0% |
| CTCCAATGTAACAAACTAAC+AGG | + | chr6_3:6807035-6807054 | None:intergenic | 35.0% | |
| !! | GTTAGTTTGTTACATTGGAG+TGG | - | chr6_3:6807035-6807054 | Msa0936150:CDS | 35.0% |
| TTGTTACATTGGAGTGGTAA+AGG | - | chr6_3:6807041-6807060 | Msa0936150:CDS | 35.0% | |
| TGTTACATTGGAGTGGTAAA+GGG | - | chr6_3:6807042-6807061 | Msa0936150:CDS | 35.0% | |
| TGATCTTTATATGCCACATG+TGG | - | chr6_3:6807127-6807146 | Msa0936150:CDS | 35.0% | |
| GATCTTTATATGCCACATGT+GGG | - | chr6_3:6807128-6807147 | Msa0936150:CDS | 35.0% | |
| GGATTATTTGAGAGGCTCTA+TGG | - | chr6_3:6806314-6806333 | Msa0936150:CDS | 40.0% | |
| TTATGGAAGGTTTCGTTGAC+CGG | - | chr6_3:6806651-6806670 | Msa0936150:CDS | 40.0% | |
| !! | AGGCCATGTTATTTCAACAC+TGG | - | chr6_3:6806786-6806805 | Msa0936150:CDS | 40.0% |
| !! | TGGTGTGATGGTAATGGATT+TGG | - | chr6_3:6806806-6806825 | Msa0936150:CDS | 40.0% |
| !! | GATTTGGTGAAATGGAGAGA+AGG | - | chr6_3:6806822-6806841 | Msa0936150:CDS | 40.0% |
| AGATGGAATCAACATGGTCT+TGG | - | chr6_3:6806966-6806985 | Msa0936150:CDS | 40.0% | |
| AGTTGTAGAAGTTTGCATCC+TGG | - | chr6_3:6807008-6807027 | Msa0936150:CDS | 40.0% | |
| TGTAACAAACTAACAGGACC+AGG | + | chr6_3:6807029-6807048 | None:intergenic | 40.0% | |
| ATTGCATCAAGTCTTCTCCA+TGG | + | chr6_3:6807071-6807090 | None:intergenic | 40.0% | |
| TATATGCCACATGTGGGATA+TGG | - | chr6_3:6807134-6807153 | Msa0936150:CDS | 40.0% | |
| GGATTATTTGAGAGGCTCTA+TGG | - | chr6_3:6806314-6806333 | Msa0936150:CDS | 40.0% | |
| TTATGGAAGGTTTCGTTGAC+CGG | - | chr6_3:6806651-6806670 | Msa0936150:CDS | 40.0% | |
| !! | AGGCCATGTTATTTCAACAC+TGG | - | chr6_3:6806786-6806805 | Msa0936150:CDS | 40.0% |
| !! | TGGTGTGATGGTAATGGATT+TGG | - | chr6_3:6806806-6806825 | Msa0936150:CDS | 40.0% |
| !! | GATTTGGTGAAATGGAGAGA+AGG | - | chr6_3:6806822-6806841 | Msa0936150:CDS | 40.0% |
| AGATGGAATCAACATGGTCT+TGG | - | chr6_3:6806966-6806985 | Msa0936150:CDS | 40.0% | |
| AGTTGTAGAAGTTTGCATCC+TGG | - | chr6_3:6807008-6807027 | Msa0936150:CDS | 40.0% | |
| TGTAACAAACTAACAGGACC+AGG | + | chr6_3:6807029-6807048 | None:intergenic | 40.0% | |
| ATTGCATCAAGTCTTCTCCA+TGG | + | chr6_3:6807071-6807090 | None:intergenic | 40.0% | |
| TATATGCCACATGTGGGATA+TGG | - | chr6_3:6807134-6807153 | Msa0936150:CDS | 40.0% | |
| TTGACCGGATCGAAGGTAAT+CGG | - | chr6_3:6806666-6806685 | Msa0936150:CDS | 45.0% | |
| CAACACTGGTGTGATGGTAA+TGG | - | chr6_3:6806800-6806819 | Msa0936150:CDS | 45.0% | |
| ! | TGGAATCAACATGGTCTTGG+TGG | - | chr6_3:6806969-6806988 | Msa0936150:CDS | 45.0% |
| GAATGTCCATATCCCACATG+TGG | + | chr6_3:6807143-6807162 | None:intergenic | 45.0% | |
| TTGACCGGATCGAAGGTAAT+CGG | - | chr6_3:6806666-6806685 | Msa0936150:CDS | 45.0% | |
| CAACACTGGTGTGATGGTAA+TGG | - | chr6_3:6806800-6806819 | Msa0936150:CDS | 45.0% | |
| ! | TGGAATCAACATGGTCTTGG+TGG | - | chr6_3:6806969-6806988 | Msa0936150:CDS | 45.0% |
| GAATGTCCATATCCCACATG+TGG | + | chr6_3:6807143-6807162 | None:intergenic | 45.0% | |
| !! | TGCACCGATTACCTTCGATC+CGG | + | chr6_3:6806673-6806692 | None:intergenic | 50.0% |
| ATCGAAGGTAATCGGTGCAC+CGG | - | chr6_3:6806674-6806693 | Msa0936150:CDS | 50.0% | |
| GGAGTGGTAAAGGGAAACCA+TGG | - | chr6_3:6807051-6807070 | Msa0936150:CDS | 50.0% | |
| !! | TGCACCGATTACCTTCGATC+CGG | + | chr6_3:6806673-6806692 | None:intergenic | 50.0% |
| ATCGAAGGTAATCGGTGCAC+CGG | - | chr6_3:6806674-6806693 | Msa0936150:CDS | 50.0% | |
| GGAGTGGTAAAGGGAAACCA+TGG | - | chr6_3:6807051-6807070 | Msa0936150:CDS | 50.0% | |
| GGTTTCGTTGACCGGATCGA+AGG | - | chr6_3:6806659-6806678 | Msa0936150:CDS | 55.0% | |
| GGTTTCGTTGACCGGATCGA+AGG | - | chr6_3:6806659-6806678 | Msa0936150:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 6806189 | 6807172 | 6806189 | ID=Msa0936150;Name=Msa0936150 |
| chr6_3 | mRNA | 6806189 | 6807172 | 6806189 | ID=Msa0936150-mRNA-1;Parent=Msa0936150;Name=Msa0936150-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|-1|0|1|-1|1|1|0|327 |
| chr6_3 | exon | 6806189 | 6807172 | 6806189 | ID=Msa0936150-mRNA-1:exon:2209;Parent=Msa0936150-mRNA-1 |
| chr6_3 | CDS | 6806189 | 6807172 | 6806189 | ID=Msa0936150-mRNA-1:cds;Parent=Msa0936150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
