Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870470 | XP_003607050.1 | 96.942 | 327 | 10 | 0 | 1 | 327 | 45 | 371 | 0.0 | 671 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870470 | sp|O04536|GATL9_ARATH | 65.931 | 317 | 102 | 3 | 2 | 316 | 50 | 362 | 1.13e-157 | 449 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870470 | G7KJH6 | 96.942 | 327 | 10 | 0 | 1 | 327 | 45 | 371 | 0.0 | 671 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0437070 | Msa0870470 | 0.800462 | 1.425377e-48 | -8.615850e-47 |
| Msa0463490 | Msa0870470 | 0.838073 | 3.571635e-57 | -8.615850e-47 |
| Msa0305620 | Msa0870470 | 0.800152 | 1.648002e-48 | -8.615850e-47 |
| Msa0860250 | Msa0870470 | 0.826770 | 2.260755e-54 | -8.615850e-47 |
| Msa0870470 | Msa0903580 | 0.880378 | 5.765158e-70 | -8.615850e-47 |
| Msa0870470 | Msa0936150 | 0.895387 | 1.006342e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870470 | MtrunA17_Chr6g0451981 | 96.942 | 327 | 10 | 0 | 1 | 327 | 45 | 371 | 0.0 | 671 |
| Msa0870470 | MtrunA17_Chr5g0414981 | 66.772 | 316 | 102 | 2 | 3 | 318 | 63 | 375 | 2.46e-156 | 445 |
| Msa0870470 | MtrunA17_Chr7g0269751 | 62.420 | 314 | 105 | 4 | 3 | 316 | 51 | 351 | 5.16e-149 | 423 |
| Msa0870470 | MtrunA17_Chr8g0373671 | 57.188 | 313 | 129 | 2 | 3 | 315 | 29 | 336 | 1.27e-136 | 391 |
| Msa0870470 | MtrunA17_Chr1g0154521 | 58.750 | 320 | 120 | 4 | 2 | 315 | 45 | 358 | 3.90e-136 | 390 |
| Msa0870470 | MtrunA17_Chr3g0127611 | 57.962 | 314 | 117 | 4 | 3 | 316 | 34 | 332 | 4.02e-136 | 390 |
| Msa0870470 | MtrunA17_Chr7g0259321 | 56.832 | 322 | 118 | 4 | 1 | 322 | 49 | 349 | 1.71e-133 | 383 |
| Msa0870470 | MtrunA17_Chr3g0141321 | 57.962 | 314 | 119 | 3 | 2 | 315 | 31 | 331 | 8.57e-133 | 381 |
| Msa0870470 | MtrunA17_Chr5g0403501 | 54.012 | 324 | 136 | 2 | 3 | 315 | 37 | 358 | 1.73e-131 | 379 |
| Msa0870470 | MtrunA17_Chr1g0196511 | 57.716 | 324 | 113 | 6 | 3 | 326 | 54 | 353 | 3.15e-126 | 365 |
| Msa0870470 | MtrunA17_Chr4g0066331 | 54.286 | 315 | 125 | 5 | 3 | 316 | 42 | 338 | 5.82e-126 | 364 |
| Msa0870470 | MtrunA17_Chr8g0351091 | 28.105 | 306 | 180 | 10 | 20 | 295 | 287 | 582 | 5.09e-25 | 105 |
| Msa0870470 | MtrunA17_Chr2g0308241 | 34.239 | 184 | 109 | 6 | 121 | 302 | 340 | 513 | 5.28e-25 | 105 |
| Msa0870470 | MtrunA17_Chr4g0061711 | 33.333 | 201 | 122 | 7 | 121 | 320 | 340 | 529 | 1.13e-23 | 101 |
| Msa0870470 | MtrunA17_Chr8g0383241 | 25.857 | 321 | 196 | 12 | 1 | 295 | 157 | 461 | 2.61e-22 | 97.1 |
| Msa0870470 | MtrunA17_Chr2g0283461 | 25.215 | 349 | 207 | 12 | 9 | 327 | 203 | 527 | 3.06e-22 | 97.1 |
| Msa0870470 | MtrunA17_Chr3g0138381 | 25.914 | 301 | 183 | 8 | 28 | 298 | 348 | 638 | 2.30e-21 | 94.7 |
| Msa0870470 | MtrunA17_Chr7g0235161 | 31.000 | 200 | 123 | 7 | 102 | 295 | 340 | 530 | 2.81e-21 | 94.4 |
| Msa0870470 | MtrunA17_Chr7g0246371 | 25.075 | 335 | 200 | 11 | 20 | 324 | 341 | 654 | 2.22e-20 | 92.0 |
| Msa0870470 | MtrunA17_Chr7g0218571 | 28.729 | 181 | 116 | 6 | 121 | 295 | 334 | 507 | 3.71e-19 | 88.2 |
| Msa0870470 | MtrunA17_Chr4g0076011 | 29.327 | 208 | 122 | 8 | 121 | 313 | 261 | 458 | 6.72e-19 | 87.0 |
| Msa0870470 | MtrunA17_Chr6g0456071 | 28.261 | 230 | 147 | 8 | 76 | 295 | 304 | 525 | 6.75e-19 | 87.4 |
| Msa0870470 | MtrunA17_Chr2g0290961 | 31.461 | 178 | 108 | 5 | 121 | 295 | 471 | 637 | 1.07e-18 | 87.0 |
| Msa0870470 | MtrunA17_Chr2g0319311 | 29.648 | 199 | 124 | 8 | 121 | 313 | 338 | 526 | 3.35e-18 | 85.1 |
| Msa0870470 | MtrunA17_Chr3g0097091 | 24.503 | 302 | 187 | 12 | 28 | 295 | 206 | 500 | 7.74e-15 | 75.1 |
| Msa0870470 | MtrunA17_Chr7g0260711 | 25.143 | 175 | 126 | 3 | 121 | 295 | 455 | 624 | 4.43e-14 | 73.2 |
| Msa0870470 | MtrunA17_Chr6g0454101 | 29.530 | 149 | 97 | 4 | 151 | 295 | 358 | 502 | 9.46e-14 | 72.0 |
| Msa0870470 | MtrunA17_Chr2g0277591 | 23.496 | 349 | 189 | 14 | 9 | 327 | 203 | 503 | 2.26e-13 | 70.9 |
| Msa0870470 | MtrunA17_Chr7g0245621 | 31.928 | 166 | 92 | 9 | 151 | 313 | 483 | 630 | 7.44e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870470 | AT1G70090.1 | 65.931 | 317 | 102 | 3 | 2 | 316 | 50 | 362 | 1.15e-158 | 449 |
| Msa0870470 | AT1G70090.2 | 65.931 | 317 | 102 | 3 | 2 | 316 | 50 | 362 | 1.15e-158 | 449 |
| Msa0870470 | AT3G28340.1 | 64.263 | 319 | 106 | 4 | 5 | 322 | 44 | 355 | 1.71e-157 | 445 |
| Msa0870470 | AT1G24170.1 | 64.375 | 320 | 104 | 3 | 3 | 316 | 50 | 365 | 1.29e-154 | 439 |
| Msa0870470 | AT3G62660.1 | 63.924 | 316 | 101 | 4 | 1 | 316 | 54 | 356 | 4.50e-147 | 419 |
| Msa0870470 | AT4G02130.3 | 66.782 | 289 | 90 | 3 | 28 | 316 | 60 | 342 | 3.39e-145 | 413 |
| Msa0870470 | AT4G02130.1 | 66.782 | 289 | 90 | 3 | 28 | 316 | 60 | 342 | 3.39e-145 | 413 |
| Msa0870470 | AT4G02130.2 | 66.782 | 289 | 90 | 3 | 28 | 316 | 60 | 342 | 3.39e-145 | 413 |
| Msa0870470 | AT1G02720.1 | 61.270 | 315 | 110 | 6 | 3 | 316 | 54 | 357 | 7.22e-143 | 408 |
| Msa0870470 | AT1G02720.2 | 61.270 | 315 | 110 | 6 | 3 | 316 | 54 | 357 | 7.22e-143 | 408 |
| Msa0870470 | AT3G06260.1 | 58.917 | 314 | 112 | 7 | 3 | 316 | 46 | 342 | 1.31e-134 | 387 |
| Msa0870470 | AT3G50760.1 | 56.467 | 317 | 126 | 4 | 2 | 315 | 24 | 331 | 4.12e-131 | 377 |
| Msa0870470 | AT1G13250.1 | 58.280 | 314 | 123 | 4 | 3 | 316 | 31 | 336 | 9.66e-126 | 364 |
| Msa0870470 | AT1G19300.1 | 58.621 | 319 | 123 | 3 | 2 | 315 | 28 | 342 | 1.54e-122 | 356 |
| Msa0870470 | AT1G18580.1 | 28.522 | 291 | 165 | 11 | 43 | 302 | 237 | 515 | 1.95e-26 | 109 |
| Msa0870470 | AT4G38270.2 | 26.351 | 296 | 178 | 8 | 30 | 295 | 361 | 646 | 1.01e-22 | 99.4 |
| Msa0870470 | AT4G38270.1 | 26.351 | 296 | 178 | 8 | 30 | 295 | 365 | 650 | 1.13e-22 | 99.4 |
| Msa0870470 | AT3G25140.1 | 25.938 | 320 | 192 | 10 | 8 | 295 | 223 | 529 | 2.40e-22 | 98.2 |
| Msa0870470 | AT3G61130.1 | 27.184 | 309 | 182 | 11 | 20 | 298 | 351 | 646 | 3.04e-22 | 97.8 |
| Msa0870470 | AT5G47780.1 | 29.870 | 231 | 141 | 8 | 75 | 295 | 367 | 586 | 6.74e-21 | 94.0 |
| Msa0870470 | AT3G01040.1 | 28.571 | 189 | 124 | 6 | 121 | 303 | 296 | 479 | 5.28e-20 | 90.9 |
| Msa0870470 | AT3G01040.2 | 28.571 | 189 | 124 | 6 | 121 | 303 | 329 | 512 | 5.49e-20 | 90.9 |
| Msa0870470 | AT3G01040.3 | 28.571 | 189 | 124 | 6 | 121 | 303 | 329 | 512 | 5.49e-20 | 90.9 |
| Msa0870470 | AT5G15470.1 | 28.796 | 191 | 121 | 7 | 121 | 303 | 329 | 512 | 3.98e-19 | 88.6 |
| Msa0870470 | AT3G58790.2 | 25.890 | 309 | 180 | 12 | 28 | 295 | 78 | 378 | 6.11e-19 | 87.4 |
| Msa0870470 | AT3G58790.1 | 29.442 | 197 | 128 | 7 | 121 | 313 | 336 | 525 | 1.09e-18 | 87.0 |
| Msa0870470 | AT5G54690.1 | 28.934 | 197 | 128 | 7 | 121 | 313 | 331 | 519 | 1.42e-18 | 86.7 |
| Msa0870470 | AT2G30575.1 | 25.979 | 281 | 188 | 7 | 24 | 295 | 311 | 580 | 5.81e-18 | 85.1 |
| Msa0870470 | AT3G02350.1 | 31.100 | 209 | 130 | 6 | 92 | 295 | 332 | 531 | 9.83e-18 | 84.3 |
| Msa0870470 | AT2G46480.3 | 30.899 | 178 | 115 | 5 | 121 | 298 | 344 | 513 | 2.09e-17 | 83.2 |
| Msa0870470 | AT2G46480.4 | 30.899 | 178 | 115 | 5 | 121 | 298 | 357 | 526 | 2.11e-17 | 83.2 |
| Msa0870470 | AT2G20810.1 | 25.472 | 318 | 198 | 9 | 9 | 298 | 204 | 510 | 1.73e-16 | 80.5 |
| Msa0870470 | AT1G06780.2 | 28.571 | 175 | 120 | 3 | 121 | 295 | 403 | 572 | 2.29e-16 | 80.1 |
| Msa0870470 | AT1G06780.1 | 28.571 | 175 | 120 | 3 | 121 | 295 | 390 | 559 | 2.80e-16 | 80.1 |
Find 52 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATGATATTCAAGATTTA+TGG | 0.160378 | 6_1:-4869290 | Msa0870470:CDS |
| ATATGGACATTCATTGATTT+AGG | 0.240908 | 6_1:-4868773 | None:intergenic |
| TATATGCCTCATGTGGGATA+TGG | 0.327711 | 6_1:-4868790 | Msa0870470:CDS |
| GGATTATTTGAGAGGCTCTA+TGG | 0.341185 | 6_1:-4869610 | Msa0870470:CDS |
| TGTTACATTGGAGTGGTAAA+GGG | 0.388590 | 6_1:-4868882 | Msa0870470:CDS |
| TCAAGTGCTTGTCTTATTGA+AGG | 0.389187 | 6_1:+4869405 | None:intergenic |
| ATATTTCAATGACTATTGAT+TGG | 0.393932 | 6_1:-4869632 | Msa0870470:CDS |
| CTCCAATGTAACAAACTAAC+AGG | 0.395838 | 6_1:+4868892 | None:intergenic |
| TTGAAGCTATTGAACATAGA+TGG | 0.398424 | 6_1:-4868975 | Msa0870470:CDS |
| AGAATAAAGATGAGTTTACT+AGG | 0.399390 | 6_1:-4869506 | Msa0870470:CDS |
| TATTTCAATGACTATTGATT+GGG | 0.406478 | 6_1:-4869631 | Msa0870470:CDS |
| GTGAGAAGGGTTTATAAGCT+TGG | 0.416693 | 6_1:-4869036 | Msa0870470:CDS |
| TTGTTACATTGGAGTGGTAA+AGG | 0.425011 | 6_1:-4868883 | Msa0870470:CDS |
| GTCCTGTTAGTTTGTTACAT+TGG | 0.430690 | 6_1:-4868894 | Msa0870470:CDS |
| GAGTTTACTAGGATTGTTCA+TGG | 0.433334 | 6_1:-4869495 | Msa0870470:CDS |
| TTATGGAAGGTTTCGTTGAC+CGG | 0.444509 | 6_1:-4869273 | Msa0870470:CDS |
| AAATTTGCATGACAATATTC+CGG | 0.448533 | 6_1:+4869231 | None:intergenic |
| ACACAAAGAAGATTGAGAAA+TGG | 0.449104 | 6_1:-4869074 | Msa0870470:CDS |
| TGGTAATGGATTTGGTGAAA+TGG | 0.449678 | 6_1:-4869110 | Msa0870470:CDS |
| CAACACTGGTGTGATGGTAA+TGG | 0.479656 | 6_1:-4869124 | Msa0870470:CDS |
| TAAACTTTGAATTTCAATGA+AGG | 0.482539 | 6_1:+4869465 | None:intergenic |
| TAACTTCTTGCATAATTCAA+AGG | 0.483151 | 6_1:+4869378 | None:intergenic |
| TGAGGCATATAAAGATCATA+AGG | 0.488978 | 6_1:+4868802 | None:intergenic |
| TGGTGTGATGGTAATGGATT+TGG | 0.491814 | 6_1:-4869118 | Msa0870470:CDS |
| AGATGGAATCAACATGGTCT+TGG | 0.496429 | 6_1:-4868958 | Msa0870470:CDS |
| GAAATGGATGGAAATTCAAA+AGG | 0.498984 | 6_1:-4869058 | Msa0870470:CDS |
| GGAAATTCAAAAGGTGAGAA+GGG | 0.517101 | 6_1:-4869049 | Msa0870470:CDS |
| TTGACCGGATCGAAGGTAAT+CGG | 0.520100 | 6_1:-4869258 | Msa0870470:CDS |
| TTCATTTATGCAATTCAAAG+AGG | 0.525950 | 6_1:-4869742 | None:intergenic |
| ATTGCATCAAGTCTTCTCCA+TGG | 0.528733 | 6_1:+4868856 | None:intergenic |
| TGGAAATTCAAAAGGTGAGA+AGG | 0.532785 | 6_1:-4869050 | Msa0870470:CDS |
| ATTGATTGGGATTATTTGAG+AGG | 0.533333 | 6_1:-4869618 | Msa0870470:CDS |
| TGATCTTTATATGCCTCATG+TGG | 0.542660 | 6_1:-4868797 | Msa0870470:CDS |
| AGTTGTAGAAGTTTGCATCC+TGG | 0.544023 | 6_1:-4868916 | Msa0870470:CDS |
| GGTTTCGTTGACCGGATCGA+AGG | 0.548154 | 6_1:-4869265 | Msa0870470:CDS |
| GTTAGTTTGTTACATTGGAG+TGG | 0.559019 | 6_1:-4868889 | Msa0870470:CDS |
| AAAGAAGATTGAGAAATGGA+TGG | 0.561407 | 6_1:-4869070 | Msa0870470:CDS |
| ATCGAAGGTAATCGGTGCAC+CGG | 0.567159 | 6_1:-4869250 | Msa0870470:CDS |
| TGGAATCAACATGGTCTTGG+TGG | 0.582134 | 6_1:-4868955 | Msa0870470:CDS |
| ATTGAAATATGAACAAGTGA+AGG | 0.582765 | 6_1:+4869645 | None:intergenic |
| AAGCCATGTTATTTCAACAC+TGG | 0.583969 | 6_1:-4869138 | Msa0870470:CDS |
| TGCACCGATTACCTTCGATC+CGG | 0.596738 | 6_1:+4869254 | None:intergenic |
| TGTAACAAACTAACAGGACC+AGG | 0.614863 | 6_1:+4868898 | None:intergenic |
| TGATATTCAAGATTTATGGA+AGG | 0.616697 | 6_1:-4869286 | Msa0870470:CDS |
| GATCTTTATATGCCTCATGT+GGG | 0.625084 | 6_1:-4868796 | Msa0870470:CDS |
| TTATTTCAACACTGGTGTGA+TGG | 0.626622 | 6_1:-4869130 | Msa0870470:CDS |
| ACACCAGTGTTGAAATAACA+TGG | 0.638418 | 6_1:+4869135 | None:intergenic |
| GAATGTCCATATCCCACATG+AGG | 0.644433 | 6_1:+4868784 | None:intergenic |
| GATTTGGTGAAATGGAGAGA+AGG | 0.660269 | 6_1:-4869102 | Msa0870470:CDS |
| GGAGTGGTAAAGGGAAACCA+TGG | 0.670933 | 6_1:-4868873 | Msa0870470:CDS |
| ATTGTCATGCAAATTTCACA+AGG | 0.680182 | 6_1:-4869224 | Msa0870470:CDS |
| GAACATAGATGGAATCAACA+TGG | 0.707717 | 6_1:-4868964 | Msa0870470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAAAAAACAAATTCTT+AGG | + | chr6_1:4868960-4868979 | None:intergenic | 15.0% |
| !! | AAATGAAAAAACAAATTCTT+AGG | + | chr6_1:4868960-4868979 | None:intergenic | 15.0% |
| !!! | TTTTGCATATTTCTATATTC+TGG | + | chr6_1:4868795-4868814 | None:intergenic | 20.0% |
| !! | ATATTTCAATGACTATTGAT+TGG | - | chr6_1:4868877-4868896 | Msa0870470:CDS | 20.0% |
| !!! | TATTTCAATGACTATTGATT+GGG | - | chr6_1:4868878-4868897 | Msa0870470:CDS | 20.0% |
| !! | TAAACTTTGAATTTCAATGA+AGG | + | chr6_1:4869047-4869066 | None:intergenic | 20.0% |
| !!! | TTGATGATATTCAAGATTTA+TGG | - | chr6_1:4869219-4869238 | Msa0870470:CDS | 20.0% |
| !!! | TTTTGCATATTTCTATATTC+TGG | + | chr6_1:4868795-4868814 | None:intergenic | 20.0% |
| !! | ATATTTCAATGACTATTGAT+TGG | - | chr6_1:4868877-4868896 | Msa0870470:CDS | 20.0% |
| !!! | TATTTCAATGACTATTGATT+GGG | - | chr6_1:4868878-4868897 | Msa0870470:CDS | 20.0% |
| !! | TAAACTTTGAATTTCAATGA+AGG | + | chr6_1:4869047-4869066 | None:intergenic | 20.0% |
| !!! | TTGATGATATTCAAGATTTA+TGG | - | chr6_1:4869219-4869238 | Msa0870470:CDS | 20.0% |
| ! | ATTGAAATATGAACAAGTGA+AGG | + | chr6_1:4868867-4868886 | None:intergenic | 25.0% |
| ! | AGAATAAAGATGAGTTTACT+AGG | - | chr6_1:4869003-4869022 | Msa0870470:CDS | 25.0% |
| ! | TAACTTCTTGCATAATTCAA+AGG | + | chr6_1:4869134-4869153 | None:intergenic | 25.0% |
| ! | TGATATTCAAGATTTATGGA+AGG | - | chr6_1:4869223-4869242 | Msa0870470:CDS | 25.0% |
| ! | AAATTTGCATGACAATATTC+CGG | + | chr6_1:4869281-4869300 | None:intergenic | 25.0% |
| ! | ATTGAAATATGAACAAGTGA+AGG | + | chr6_1:4868867-4868886 | None:intergenic | 25.0% |
| ! | AGAATAAAGATGAGTTTACT+AGG | - | chr6_1:4869003-4869022 | Msa0870470:CDS | 25.0% |
| ! | TAACTTCTTGCATAATTCAA+AGG | + | chr6_1:4869134-4869153 | None:intergenic | 25.0% |
| ! | TGATATTCAAGATTTATGGA+AGG | - | chr6_1:4869223-4869242 | Msa0870470:CDS | 25.0% |
| ! | AAATTTGCATGACAATATTC+CGG | + | chr6_1:4869281-4869300 | None:intergenic | 25.0% |
| ATTGATTGGGATTATTTGAG+AGG | - | chr6_1:4868891-4868910 | Msa0870470:CDS | 30.0% | |
| ATTGTCATGCAAATTTCACA+AGG | - | chr6_1:4869285-4869304 | Msa0870470:CDS | 30.0% | |
| !!! | GGTATTTTAGCTATGAGTTT+TGG | - | chr6_1:4869306-4869325 | Msa0870470:CDS | 30.0% |
| ! | GTCAAGTTATGAATTTTCTG+AGG | - | chr6_1:4869328-4869347 | Msa0870470:CDS | 30.0% |
| !!! | GAATTTTCTGAGGTGTTTAA+AGG | - | chr6_1:4869338-4869357 | Msa0870470:CDS | 30.0% |
| ACACAAAGAAGATTGAGAAA+TGG | - | chr6_1:4869435-4869454 | Msa0870470:CDS | 30.0% | |
| AAAGAAGATTGAGAAATGGA+TGG | - | chr6_1:4869439-4869458 | Msa0870470:CDS | 30.0% | |
| GAAATGGATGGAAATTCAAA+AGG | - | chr6_1:4869451-4869470 | Msa0870470:CDS | 30.0% | |
| !!! | ATCATTACCTCCTTTTTTGA+TGG | - | chr6_1:4869496-4869515 | Msa0870470:CDS | 30.0% |
| TTGAAGCTATTGAACATAGA+TGG | - | chr6_1:4869534-4869553 | Msa0870470:CDS | 30.0% | |
| CACAAAAAATCAACAGAACA+AGG | + | chr6_1:4869683-4869702 | None:intergenic | 30.0% | |
| !!! | CTTGTTCTGTTGATTTTTTG+TGG | - | chr6_1:4869681-4869700 | Msa0870470:CDS | 30.0% |
| TGAGGCATATAAAGATCATA+AGG | + | chr6_1:4869710-4869729 | None:intergenic | 30.0% | |
| ATTGATTGGGATTATTTGAG+AGG | - | chr6_1:4868891-4868910 | Msa0870470:CDS | 30.0% | |
| ATTGTCATGCAAATTTCACA+AGG | - | chr6_1:4869285-4869304 | Msa0870470:CDS | 30.0% | |
| !!! | GGTATTTTAGCTATGAGTTT+TGG | - | chr6_1:4869306-4869325 | Msa0870470:CDS | 30.0% |
| ! | GTCAAGTTATGAATTTTCTG+AGG | - | chr6_1:4869328-4869347 | Msa0870470:CDS | 30.0% |
| !!! | GAATTTTCTGAGGTGTTTAA+AGG | - | chr6_1:4869338-4869357 | Msa0870470:CDS | 30.0% |
| ACACAAAGAAGATTGAGAAA+TGG | - | chr6_1:4869435-4869454 | Msa0870470:CDS | 30.0% | |
| AAAGAAGATTGAGAAATGGA+TGG | - | chr6_1:4869439-4869458 | Msa0870470:CDS | 30.0% | |
| GAAATGGATGGAAATTCAAA+AGG | - | chr6_1:4869451-4869470 | Msa0870470:CDS | 30.0% | |
| !!! | ATCATTACCTCCTTTTTTGA+TGG | - | chr6_1:4869496-4869515 | Msa0870470:CDS | 30.0% |
| TTGAAGCTATTGAACATAGA+TGG | - | chr6_1:4869534-4869553 | Msa0870470:CDS | 30.0% | |
| CACAAAAAATCAACAGAACA+AGG | + | chr6_1:4869683-4869702 | None:intergenic | 30.0% | |
| !!! | CTTGTTCTGTTGATTTTTTG+TGG | - | chr6_1:4869681-4869700 | Msa0870470:CDS | 30.0% |
| TGAGGCATATAAAGATCATA+AGG | + | chr6_1:4869710-4869729 | None:intergenic | 30.0% | |
| GAGTTTACTAGGATTGTTCA+TGG | - | chr6_1:4869014-4869033 | Msa0870470:CDS | 35.0% | |
| ! | TCAAGTGCTTGTCTTATTGA+AGG | + | chr6_1:4869107-4869126 | None:intergenic | 35.0% |
| !! | AAGCCATGTTATTTCAACAC+TGG | - | chr6_1:4869371-4869390 | Msa0870470:CDS | 35.0% |
| ! | ACACCAGTGTTGAAATAACA+TGG | + | chr6_1:4869377-4869396 | None:intergenic | 35.0% |
| TTATTTCAACACTGGTGTGA+TGG | - | chr6_1:4869379-4869398 | Msa0870470:CDS | 35.0% | |
| !! | TGGTAATGGATTTGGTGAAA+TGG | - | chr6_1:4869399-4869418 | Msa0870470:CDS | 35.0% |
| TGGAAATTCAAAAGGTGAGA+AGG | - | chr6_1:4869459-4869478 | Msa0870470:CDS | 35.0% | |
| GGAAATTCAAAAGGTGAGAA+GGG | - | chr6_1:4869460-4869479 | Msa0870470:CDS | 35.0% | |
| CCAAAAACCATCAAAAAAGG+AGG | + | chr6_1:4869506-4869525 | None:intergenic | 35.0% | |
| !!! | CCTCCTTTTTTGATGGTTTT+TGG | - | chr6_1:4869503-4869522 | Msa0870470:CDS | 35.0% |
| CCACCAAAAACCATCAAAAA+AGG | + | chr6_1:4869509-4869528 | None:intergenic | 35.0% | |
| !!! | CCTTTTTTGATGGTTTTTGG+TGG | - | chr6_1:4869506-4869525 | Msa0870470:CDS | 35.0% |
| GAACATAGATGGAATCAACA+TGG | - | chr6_1:4869545-4869564 | Msa0870470:CDS | 35.0% | |
| !! | GTCCTGTTAGTTTGTTACAT+TGG | - | chr6_1:4869615-4869634 | Msa0870470:CDS | 35.0% |
| CTCCAATGTAACAAACTAAC+AGG | + | chr6_1:4869620-4869639 | None:intergenic | 35.0% | |
| !! | GTTAGTTTGTTACATTGGAG+TGG | - | chr6_1:4869620-4869639 | Msa0870470:CDS | 35.0% |
| TTGTTACATTGGAGTGGTAA+AGG | - | chr6_1:4869626-4869645 | Msa0870470:CDS | 35.0% | |
| TGTTACATTGGAGTGGTAAA+GGG | - | chr6_1:4869627-4869646 | Msa0870470:CDS | 35.0% | |
| TGATCTTTATATGCCTCATG+TGG | - | chr6_1:4869712-4869731 | Msa0870470:CDS | 35.0% | |
| GATCTTTATATGCCTCATGT+GGG | - | chr6_1:4869713-4869732 | Msa0870470:CDS | 35.0% | |
| GAGTTTACTAGGATTGTTCA+TGG | - | chr6_1:4869014-4869033 | Msa0870470:CDS | 35.0% | |
| ! | TCAAGTGCTTGTCTTATTGA+AGG | + | chr6_1:4869107-4869126 | None:intergenic | 35.0% |
| !! | AAGCCATGTTATTTCAACAC+TGG | - | chr6_1:4869371-4869390 | Msa0870470:CDS | 35.0% |
| ! | ACACCAGTGTTGAAATAACA+TGG | + | chr6_1:4869377-4869396 | None:intergenic | 35.0% |
| TTATTTCAACACTGGTGTGA+TGG | - | chr6_1:4869379-4869398 | Msa0870470:CDS | 35.0% | |
| !! | TGGTAATGGATTTGGTGAAA+TGG | - | chr6_1:4869399-4869418 | Msa0870470:CDS | 35.0% |
| TGGAAATTCAAAAGGTGAGA+AGG | - | chr6_1:4869459-4869478 | Msa0870470:CDS | 35.0% | |
| GGAAATTCAAAAGGTGAGAA+GGG | - | chr6_1:4869460-4869479 | Msa0870470:CDS | 35.0% | |
| CCAAAAACCATCAAAAAAGG+AGG | + | chr6_1:4869506-4869525 | None:intergenic | 35.0% | |
| !!! | CCTCCTTTTTTGATGGTTTT+TGG | - | chr6_1:4869503-4869522 | Msa0870470:CDS | 35.0% |
| CCACCAAAAACCATCAAAAA+AGG | + | chr6_1:4869509-4869528 | None:intergenic | 35.0% | |
| !!! | CCTTTTTTGATGGTTTTTGG+TGG | - | chr6_1:4869506-4869525 | Msa0870470:CDS | 35.0% |
| GAACATAGATGGAATCAACA+TGG | - | chr6_1:4869545-4869564 | Msa0870470:CDS | 35.0% | |
| !! | GTCCTGTTAGTTTGTTACAT+TGG | - | chr6_1:4869615-4869634 | Msa0870470:CDS | 35.0% |
| CTCCAATGTAACAAACTAAC+AGG | + | chr6_1:4869620-4869639 | None:intergenic | 35.0% | |
| !! | GTTAGTTTGTTACATTGGAG+TGG | - | chr6_1:4869620-4869639 | Msa0870470:CDS | 35.0% |
| TTGTTACATTGGAGTGGTAA+AGG | - | chr6_1:4869626-4869645 | Msa0870470:CDS | 35.0% | |
| TGTTACATTGGAGTGGTAAA+GGG | - | chr6_1:4869627-4869646 | Msa0870470:CDS | 35.0% | |
| TGATCTTTATATGCCTCATG+TGG | - | chr6_1:4869712-4869731 | Msa0870470:CDS | 35.0% | |
| GATCTTTATATGCCTCATGT+GGG | - | chr6_1:4869713-4869732 | Msa0870470:CDS | 35.0% | |
| GGATTATTTGAGAGGCTCTA+TGG | - | chr6_1:4868899-4868918 | Msa0870470:CDS | 40.0% | |
| TTATGGAAGGTTTCGTTGAC+CGG | - | chr6_1:4869236-4869255 | Msa0870470:CDS | 40.0% | |
| !! | TGGTGTGATGGTAATGGATT+TGG | - | chr6_1:4869391-4869410 | Msa0870470:CDS | 40.0% |
| !! | GATTTGGTGAAATGGAGAGA+AGG | - | chr6_1:4869407-4869426 | Msa0870470:CDS | 40.0% |
| GTGAGAAGGGTTTATAAGCT+TGG | - | chr6_1:4869473-4869492 | Msa0870470:CDS | 40.0% | |
| AGATGGAATCAACATGGTCT+TGG | - | chr6_1:4869551-4869570 | Msa0870470:CDS | 40.0% | |
| AGTTGTAGAAGTTTGCATCC+TGG | - | chr6_1:4869593-4869612 | Msa0870470:CDS | 40.0% | |
| TGTAACAAACTAACAGGACC+AGG | + | chr6_1:4869614-4869633 | None:intergenic | 40.0% | |
| ATTGCATCAAGTCTTCTCCA+TGG | + | chr6_1:4869656-4869675 | None:intergenic | 40.0% | |
| TATATGCCTCATGTGGGATA+TGG | - | chr6_1:4869719-4869738 | Msa0870470:CDS | 40.0% | |
| GGATTATTTGAGAGGCTCTA+TGG | - | chr6_1:4868899-4868918 | Msa0870470:CDS | 40.0% | |
| TTATGGAAGGTTTCGTTGAC+CGG | - | chr6_1:4869236-4869255 | Msa0870470:CDS | 40.0% | |
| !! | TGGTGTGATGGTAATGGATT+TGG | - | chr6_1:4869391-4869410 | Msa0870470:CDS | 40.0% |
| !! | GATTTGGTGAAATGGAGAGA+AGG | - | chr6_1:4869407-4869426 | Msa0870470:CDS | 40.0% |
| GTGAGAAGGGTTTATAAGCT+TGG | - | chr6_1:4869473-4869492 | Msa0870470:CDS | 40.0% | |
| AGATGGAATCAACATGGTCT+TGG | - | chr6_1:4869551-4869570 | Msa0870470:CDS | 40.0% | |
| AGTTGTAGAAGTTTGCATCC+TGG | - | chr6_1:4869593-4869612 | Msa0870470:CDS | 40.0% | |
| TGTAACAAACTAACAGGACC+AGG | + | chr6_1:4869614-4869633 | None:intergenic | 40.0% | |
| ATTGCATCAAGTCTTCTCCA+TGG | + | chr6_1:4869656-4869675 | None:intergenic | 40.0% | |
| TATATGCCTCATGTGGGATA+TGG | - | chr6_1:4869719-4869738 | Msa0870470:CDS | 40.0% | |
| TTGACCGGATCGAAGGTAAT+CGG | - | chr6_1:4869251-4869270 | Msa0870470:CDS | 45.0% | |
| CAACACTGGTGTGATGGTAA+TGG | - | chr6_1:4869385-4869404 | Msa0870470:CDS | 45.0% | |
| ! | TGGAATCAACATGGTCTTGG+TGG | - | chr6_1:4869554-4869573 | Msa0870470:CDS | 45.0% |
| GAATGTCCATATCCCACATG+AGG | + | chr6_1:4869728-4869747 | None:intergenic | 45.0% | |
| TTGACCGGATCGAAGGTAAT+CGG | - | chr6_1:4869251-4869270 | Msa0870470:CDS | 45.0% | |
| CAACACTGGTGTGATGGTAA+TGG | - | chr6_1:4869385-4869404 | Msa0870470:CDS | 45.0% | |
| ! | TGGAATCAACATGGTCTTGG+TGG | - | chr6_1:4869554-4869573 | Msa0870470:CDS | 45.0% |
| GAATGTCCATATCCCACATG+AGG | + | chr6_1:4869728-4869747 | None:intergenic | 45.0% | |
| !! | TGCACCGATTACCTTCGATC+CGG | + | chr6_1:4869258-4869277 | None:intergenic | 50.0% |
| ATCGAAGGTAATCGGTGCAC+CGG | - | chr6_1:4869259-4869278 | Msa0870470:CDS | 50.0% | |
| GGAGTGGTAAAGGGAAACCA+TGG | - | chr6_1:4869636-4869655 | Msa0870470:CDS | 50.0% | |
| !! | TGCACCGATTACCTTCGATC+CGG | + | chr6_1:4869258-4869277 | None:intergenic | 50.0% |
| ATCGAAGGTAATCGGTGCAC+CGG | - | chr6_1:4869259-4869278 | Msa0870470:CDS | 50.0% | |
| GGAGTGGTAAAGGGAAACCA+TGG | - | chr6_1:4869636-4869655 | Msa0870470:CDS | 50.0% | |
| GGTTTCGTTGACCGGATCGA+AGG | - | chr6_1:4869244-4869263 | Msa0870470:CDS | 55.0% | |
| GGTTTCGTTGACCGGATCGA+AGG | - | chr6_1:4869244-4869263 | Msa0870470:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 4868774 | 4869757 | 4868774 | ID=Msa0870470;Name=Msa0870470 |
| chr6_1 | mRNA | 4868774 | 4869757 | 4868774 | ID=Msa0870470-mRNA-1;Parent=Msa0870470;Name=Msa0870470-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|-1|0|1|-1|1|1|0|327 |
| chr6_1 | exon | 4868774 | 4869757 | 4868774 | ID=Msa0870470-mRNA-1:exon:1562;Parent=Msa0870470-mRNA-1 |
| chr6_1 | CDS | 4868774 | 4869757 | 4868774 | ID=Msa0870470-mRNA-1:cds;Parent=Msa0870470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
