Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0936960 | KEH24988.1 | 95.733 | 375 | 15 | 1 | 2 | 375 | 1 | 375 | 0.0 | 728 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0936960 | sp|Q5EA79|GALM_BOVIN | 42.814 | 334 | 178 | 7 | 33 | 365 | 19 | 340 | 4.44e-83 | 259 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0723120 | Msa0936960 | 0.801315 | 9.540872e-49 | -8.615850e-47 |
Msa0434180 | Msa0936960 | 0.804971 | 1.671855e-49 | -8.615850e-47 |
Msa0440400 | Msa0936960 | 0.807478 | 4.956261e-50 | -8.615850e-47 |
Msa0904960 | Msa0936960 | 0.818439 | 1.959312e-52 | -8.615850e-47 |
Msa0927380 | Msa0936960 | 0.800210 | 1.603876e-48 | -8.615850e-47 |
Msa0936960 | Msa1046460 | 0.802382 | 5.760339e-49 | -8.615850e-47 |
Msa0936960 | Msa1453320 | 0.800541 | 1.373103e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0936960 | MtrunA17_Chr6g0452971 | 95.467 | 375 | 16 | 1 | 2 | 375 | 1 | 375 | 0.0 | 726 |
Msa0936960 | MtrunA17_Chr6g0452991 | 94.133 | 375 | 21 | 1 | 2 | 375 | 1 | 375 | 0.0 | 719 |
Msa0936960 | MtrunA17_Chr7g0217021 | 70.300 | 367 | 101 | 3 | 2 | 367 | 1 | 360 | 0.0 | 529 |
Msa0936960 | MtrunA17_Chr4g0060521 | 52.786 | 341 | 152 | 4 | 25 | 364 | 23 | 355 | 2.94e-123 | 360 |
Msa0936960 | MtrunA17_Chr6g0478501 | 49.415 | 342 | 166 | 5 | 28 | 367 | 3 | 339 | 3.87e-109 | 323 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0936960 | AT3G47800.1 | 52.198 | 364 | 152 | 7 | 5 | 367 | 16 | 358 | 1.37e-127 | 371 |
Msa0936960 | AT5G15140.1 | 55.988 | 334 | 140 | 5 | 33 | 365 | 160 | 487 | 1.45e-124 | 368 |
Msa0936960 | AT3G17940.1 | 48.204 | 334 | 168 | 4 | 34 | 365 | 10 | 340 | 1.16e-108 | 322 |
Msa0936960 | AT3G01260.1 | 43.114 | 334 | 160 | 8 | 33 | 365 | 119 | 423 | 9.69e-78 | 246 |
Find 87 sgRNAs with CRISPR-Local
Find 373 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCTCTTCTTAGCTGTTTC+TGG | 0.037891 | 6_3:+7927981 | Msa0936960:CDS |
CATCATTCTTCTCCTTCTTA+TGG | 0.188818 | 6_3:-7928022 | None:intergenic |
AAATTATGAGTGGTTCTTAA+TGG | 0.202194 | 6_3:-7927920 | None:intergenic |
AGAGAACAAAGAAGGATTAA+AGG | 0.218075 | 6_3:+7933201 | Msa0936960:CDS |
AACAACATAACATGCTTATA+AGG | 0.235997 | 6_3:-7933442 | None:intergenic |
GGAGCTCAGTTTACTCTAAA+TGG | 0.254147 | 6_3:+7931426 | Msa0936960:CDS |
GTTAATTATGTGCTTAATAA+AGG | 0.261601 | 6_3:+7933172 | Msa0936960:CDS |
ACAATAGTTGAAGGAAAATT+AGG | 0.263993 | 6_3:-7933406 | None:intergenic |
GAGGATTCAGTGATGTTCTT+TGG | 0.270041 | 6_3:+7931876 | Msa0936960:CDS |
ACTTGACACTATGGAGTATT+AGG | 0.299707 | 6_3:+7927769 | Msa0936960:five_prime_UTR |
GTAACTGTAAGCTACATTCT+AGG | 0.323605 | 6_3:+7932872 | Msa0936960:CDS |
TAATTTGTTTCAGGAAAGTT+AGG | 0.323657 | 6_3:+7928277 | Msa0936960:intron |
TTGCTTGCATAATTATGGTT+AGG | 0.325838 | 6_3:-7932904 | None:intergenic |
TTACTTTGAAGGTCACTAAC+TGG | 0.341785 | 6_3:+7928078 | Msa0936960:CDS |
AAGTTAGGTGATATTGTTCT+TGG | 0.341881 | 6_3:+7928292 | Msa0936960:CDS |
ACCACGTTCAGCACTTTGTT+TGG | 0.345777 | 6_3:+7933351 | Msa0936960:CDS |
GCATGGTTAACTAAGTTTAC+TGG | 0.363669 | 6_3:-7932947 | None:intergenic |
TTAGGATGATTAACAGAATC+AGG | 0.363742 | 6_3:-7933388 | None:intergenic |
AAAGTCAATGTGGCTGCTTA+TGG | 0.373826 | 6_3:-7927837 | None:intergenic |
GCTGTTTCTGGATTTGTCAA+TGG | 0.379680 | 6_3:+7927993 | Msa0936960:CDS |
ATTTGCATTACAGGATTTCC+TGG | 0.381140 | 6_3:+7932839 | Msa0936960:intron |
TGTGGCTTTACGAAATCATT+TGG | 0.385685 | 6_3:-7933100 | None:intergenic |
ATAGTGATGGATAAGAAATC+AGG | 0.386833 | 6_3:+7933232 | Msa0936960:CDS |
GACAATAACCTTATTCCAAC+CGG | 0.387603 | 6_3:+7933052 | Msa0936960:CDS |
GAAGGAAACAACACTCTTCA+TGG | 0.387877 | 6_3:+7931474 | Msa0936960:CDS |
ACTTAGTTAACCATGCCTAT+TGG | 0.388489 | 6_3:+7932954 | Msa0936960:CDS |
CATTAGCAATTAATTTGTAA+TGG | 0.396328 | 6_3:-7931452 | None:intergenic |
CTTCTTCACCATCAAAACTA+TGG | 0.396435 | 6_3:-7931952 | None:intergenic |
ATTAGCACAACTTGACACTA+TGG | 0.396934 | 6_3:+7927760 | Msa0936960:five_prime_UTR |
CAGAATGATTCATCATACTT+TGG | 0.398226 | 6_3:+7931369 | Msa0936960:intron |
GAAAGGTGATCTTACTTTGA+AGG | 0.398453 | 6_3:+7928067 | Msa0936960:CDS |
GTGGTTTCCTAGGTTCCAAT+AGG | 0.398598 | 6_3:-7932969 | None:intergenic |
TGCTTGCATAATTATGGTTA+GGG | 0.403065 | 6_3:-7932903 | None:intergenic |
ATTCTTGCACCAACAATTTG+TGG | 0.406236 | 6_3:-7933118 | None:intergenic |
AAGAACCACTCATAATTTGT+AGG | 0.410958 | 6_3:+7927925 | Msa0936960:five_prime_UTR |
TTCGTAAAGCCACAAATTGT+TGG | 0.411274 | 6_3:+7933109 | Msa0936960:CDS |
TATGGTAACTGAATTTGATC+AGG | 0.411930 | 6_3:-7931934 | None:intergenic |
GGTAGGGTTGCTAACAGAAT+TGG | 0.416927 | 6_3:+7931402 | Msa0936960:CDS |
TACAAATTAATTGCTAATGA+AGG | 0.427010 | 6_3:+7931456 | Msa0936960:CDS |
GCACTATAAAATTGCAATCC+AGG | 0.428333 | 6_3:-7933283 | None:intergenic |
GGAATAAGGTTATTGTCAAA+AGG | 0.433564 | 6_3:-7933046 | None:intergenic |
TGGTTTCTATATTGATCACT+AGG | 0.438928 | 6_3:-7927817 | None:intergenic |
TGTAGCTTACAGTTACTTTG+AGG | 0.447610 | 6_3:-7932865 | None:intergenic |
TGACTTACAGTATATGCTTC+GGG | 0.448080 | 6_3:-7928325 | None:intergenic |
GTGAAGAATGATAAGGGAAA+AGG | 0.455139 | 6_3:+7933313 | Msa0936960:CDS |
CAGTGATGTTCTTTGGAAAG+TGG | 0.458791 | 6_3:+7931883 | Msa0936960:CDS |
AAGCTTAGTACTAATGCTCC+TGG | 0.469025 | 6_3:+7933265 | Msa0936960:CDS |
ATGACTTACAGTATATGCTT+CGG | 0.470863 | 6_3:-7928326 | None:intergenic |
CTTTGGAGCAACCGTTGGTA+GGG | 0.471024 | 6_3:+7931386 | Msa0936960:CDS |
ACATAGTAGCACAAATATCT+TGG | 0.474127 | 6_3:-7927958 | None:intergenic |
TGCCACTGTTGTGGTTTCCT+AGG | 0.477157 | 6_3:-7932979 | None:intergenic |
AAGAGAAGTTTCAACTTCGA+GGG | 0.479964 | 6_3:-7927873 | None:intergenic |
TACTTTGAAGGTCACTAACT+GGG | 0.480765 | 6_3:+7928079 | Msa0936960:CDS |
AAAGAGAAGTTTCAACTTCG+AGG | 0.483276 | 6_3:-7927874 | None:intergenic |
TTGTATTTACCATTCTTGTC+AGG | 0.487865 | 6_3:-7928128 | None:intergenic |
AAATTGTTTGAGCTCAAGAA+AGG | 0.494592 | 6_3:+7928050 | Msa0936960:CDS |
GGAAAATTAGAGAACAAAGA+AGG | 0.503162 | 6_3:+7933193 | Msa0936960:CDS |
TTAACTAAGTTTACTGGTGT+AGG | 0.515178 | 6_3:-7932941 | None:intergenic |
CAATGGCTCAATCCATAAGA+AGG | 0.524105 | 6_3:+7928010 | Msa0936960:CDS |
AAGAATGATAAGGGAAAAGG+AGG | 0.537569 | 6_3:+7933316 | Msa0936960:CDS |
ACTTTGGAGCAACCGTTGGT+AGG | 0.537610 | 6_3:+7931385 | Msa0936960:CDS |
GGTTTCTATATTGATCACTA+GGG | 0.547408 | 6_3:-7927816 | None:intergenic |
TTCCTAGGTTCCAATAGGCA+TGG | 0.549117 | 6_3:-7932964 | None:intergenic |
ATGGTAACTGAATTTGATCA+GGG | 0.552134 | 6_3:-7931933 | None:intergenic |
GTGGAAAAGTATGTAAGAGA+AGG | 0.556236 | 6_3:+7931902 | Msa0936960:CDS |
AGGGTTGCTAACAGAATTGG+AGG | 0.557121 | 6_3:+7931405 | Msa0936960:CDS |
ACAGTTACTTTGAGGTCACC+AGG | 0.559345 | 6_3:-7932857 | None:intergenic |
AGAACATCACTGAATCCTCT+AGG | 0.566952 | 6_3:-7931872 | None:intergenic |
CTAAAATGTTGCCACTGTTG+TGG | 0.568105 | 6_3:-7932988 | None:intergenic |
ATATTGATCACTAGGGAATG+TGG | 0.568648 | 6_3:-7927809 | None:intergenic |
AACCATGCCTATTGGAACCT+AGG | 0.568665 | 6_3:+7932962 | Msa0936960:CDS |
TTAGTCCTACCTGACAAGAA+TGG | 0.570956 | 6_3:+7928119 | Msa0936960:CDS |
ATTTACCATTCTTGTCAGGT+AGG | 0.582202 | 6_3:-7928124 | None:intergenic |
TCATACTTTGGAGCAACCGT+TGG | 0.584842 | 6_3:+7931381 | Msa0936960:CDS |
AAAGGTTGCAGCTATAGTGA+TGG | 0.595506 | 6_3:+7933219 | Msa0936960:CDS |
AGAGAAGTTTCAACTTCGAG+GGG | 0.602670 | 6_3:-7927872 | None:intergenic |
TAGTGATGGATAAGAAATCA+GGG | 0.603466 | 6_3:+7933233 | Msa0936960:CDS |
AAAAGCATGTGGAACTTCGG+TGG | 0.606360 | 6_3:-7933473 | None:intergenic |
TCTGTTAGCAACCCTACCAA+CGG | 0.641516 | 6_3:-7931397 | None:intergenic |
ACTTTGAAGGTCACTAACTG+GGG | 0.657814 | 6_3:+7928080 | Msa0936960:CDS |
AAAGCACTATAGATAGTACA+AGG | 0.660537 | 6_3:-7933569 | None:intergenic |
TCCAAACAAAGTGCTGAACG+TGG | 0.666017 | 6_3:-7933352 | None:intergenic |
AAAAGAAAGGAAAGTCAATG+TGG | 0.671123 | 6_3:-7927847 | None:intergenic |
CTTTACTTAGGTGGACCTAG+AGG | 0.691401 | 6_3:+7931857 | Msa0936960:intron |
TGGTAACTGAATTTGATCAG+GGG | 0.692121 | 6_3:-7931932 | None:intergenic |
AGAATGATAAGGGAAAAGGA+GGG | 0.703237 | 6_3:+7933317 | Msa0936960:CDS |
AACCTAGGAAACCACAACAG+TGG | 0.725872 | 6_3:+7932977 | Msa0936960:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTTTAGTTAACATTAATT+GGG | - | chr6_3:7928924-7928943 | None:intergenic | 10.0% |
!!! | TTATTTTAGTTAACATTAAT+TGG | - | chr6_3:7928925-7928944 | None:intergenic | 10.0% |
!! | ATATATTTGCATATTAAAAA+TGG | + | chr6_3:7929174-7929193 | Msa0936960:intron | 10.0% |
!! | AAAAAAAAAAAAAAAACAAC+TGG | - | chr6_3:7930773-7930792 | None:intergenic | 10.0% |
!! | ATTATAATCATAGTAAAATT+TGG | - | chr6_3:7931620-7931639 | None:intergenic | 10.0% |
!! | TGAATTATTATTAATATTGT+TGG | - | chr6_3:7931697-7931716 | None:intergenic | 10.0% |
!!! | TAATGGATTTTATAAATAGA+AGG | - | chr6_3:7927906-7927925 | None:intergenic | 15.0% |
!! | TAAAATGTAATACATATTTC+AGG | - | chr6_3:7928366-7928385 | None:intergenic | 15.0% |
!!! | AAATTTAGATATTTGTTGTA+GGG | - | chr6_3:7929619-7929638 | None:intergenic | 15.0% |
!! | TTAAGTTACTAAATTATTGA+GGG | - | chr6_3:7929730-7929749 | None:intergenic | 15.0% |
!! | ATTAAGTTACTAAATTATTG+AGG | - | chr6_3:7929731-7929750 | None:intergenic | 15.0% |
!!! | TTAATTTTAAGAAAACAATG+TGG | + | chr6_3:7929817-7929836 | Msa0936960:intron | 15.0% |
!!! | ATTGTTGTTCTTTTTTATAA+TGG | - | chr6_3:7931058-7931077 | None:intergenic | 15.0% |
!!! | ATATCATTGACATTTTTTTA+AGG | - | chr6_3:7931095-7931114 | None:intergenic | 15.0% |
!!! | ATATAAAGCAAAATTTTTTG+TGG | - | chr6_3:7931730-7931749 | None:intergenic | 15.0% |
!!! | CTTAATATTTTACTTTACTT+AGG | + | chr6_3:7931845-7931864 | Msa0936960:intron | 15.0% |
!! | ATCAATAAAGCAACAATTAA+TGG | - | chr6_3:7928195-7928214 | None:intergenic | 20.0% |
!! | TAACATTAATTGGGAAATAT+CGG | - | chr6_3:7928915-7928934 | None:intergenic | 20.0% |
!!! | TGGATATAGTACTTTTTTTT+TGG | + | chr6_3:7928976-7928995 | Msa0936960:intron | 20.0% |
!! | TTAAAAATCAAGATACGATA+CGG | - | chr6_3:7929252-7929271 | None:intergenic | 20.0% |
!!! | CAAATTTAGATATTTGTTGT+AGG | - | chr6_3:7929620-7929639 | None:intergenic | 20.0% |
!! | CTACAACAAATATCTAAATT+TGG | + | chr6_3:7929618-7929637 | Msa0936960:intron | 20.0% |
!!! | AACGAATAAACCTTTTTTTA+GGG | - | chr6_3:7929648-7929667 | None:intergenic | 20.0% |
!!! | AAACGAATAAACCTTTTTTT+AGG | - | chr6_3:7929649-7929668 | None:intergenic | 20.0% |
!!! | TCGTAAATAATGTTTTTTAG+AGG | + | chr6_3:7929700-7929719 | Msa0936960:intron | 20.0% |
!!! | CGTAAATAATGTTTTTTAGA+GGG | + | chr6_3:7929701-7929720 | Msa0936960:intron | 20.0% |
!!! | GTAAATAATGTTTTTTAGAG+GGG | + | chr6_3:7929702-7929721 | Msa0936960:intron | 20.0% |
!!! | CTATTTTTGATTTTGATATG+CGG | + | chr6_3:7930966-7930985 | Msa0936960:intron | 20.0% |
!!! | TTTTGTTTGTTTTAGTAAAG+TGG | + | chr6_3:7931318-7931337 | Msa0936960:intron | 20.0% |
!!! | CATTAGCAATTAATTTGTAA+TGG | - | chr6_3:7931455-7931474 | None:intergenic | 20.0% |
!! | TACAAATTAATTGCTAATGA+AGG | + | chr6_3:7931456-7931475 | Msa0936960:CDS | 20.0% |
!! | TTTACTATGATTATAATGTG+TGG | + | chr6_3:7931623-7931642 | Msa0936960:intron | 20.0% |
!!! | AATATTTTACTTTACTTAGG+TGG | + | chr6_3:7931848-7931867 | Msa0936960:intron | 20.0% |
!! | ATCCAAACATATTTATAAAG+AGG | - | chr6_3:7932363-7932382 | None:intergenic | 20.0% |
!! | CTTTATAAATATGTTTGGAT+TGG | + | chr6_3:7932363-7932382 | Msa0936960:intron | 20.0% |
!! | TATGAAATGATACATAGAAA+GGG | - | chr6_3:7932547-7932566 | None:intergenic | 20.0% |
!! | ATATGAAATGATACATAGAA+AGG | - | chr6_3:7932548-7932567 | None:intergenic | 20.0% |
!!! | AACTTTTAGATAATGATGAA+AGG | - | chr6_3:7932654-7932673 | None:intergenic | 20.0% |
!! | ATATAAACTACCCTTATATA+AGG | + | chr6_3:7932681-7932700 | Msa0936960:intron | 20.0% |
!! | ATAGTATTTATTTGCATTAC+AGG | + | chr6_3:7932830-7932849 | Msa0936960:intron | 20.0% |
!! | AATCAATTACCAAAAACTAA+TGG | + | chr6_3:7933142-7933161 | Msa0936960:CDS | 20.0% |
!! | GTTAATTATGTGCTTAATAA+AGG | + | chr6_3:7933172-7933191 | Msa0936960:CDS | 20.0% |
!!! | AAATTTTGTGAAGAATGATA+AGG | + | chr6_3:7933306-7933325 | Msa0936960:CDS | 20.0% |
!!! | AATTTTGTGAAGAATGATAA+GGG | + | chr6_3:7933307-7933326 | Msa0936960:CDS | 20.0% |
! | AAATTATGAGTGGTTCTTAA+TGG | - | chr6_3:7927923-7927942 | None:intergenic | 25.0% |
!! | ATTTTCCTACAAATTATGAG+TGG | - | chr6_3:7927933-7927952 | None:intergenic | 25.0% |
! | AATAAAGCAACAATTAATGG+AGG | - | chr6_3:7928192-7928211 | None:intergenic | 25.0% |
!!! | TGCTTCTATTAATTTGTTTC+AGG | + | chr6_3:7928268-7928287 | Msa0936960:intron | 25.0% |
!!! | TAATTTGTTTCAGGAAAGTT+AGG | + | chr6_3:7928277-7928296 | Msa0936960:intron | 25.0% |
! | AGTGCTATACTATATCAAAA+AGG | - | chr6_3:7929030-7929049 | None:intergenic | 25.0% |
! | AAAACAATGGAAAGAGAAAA+AGG | - | chr6_3:7929489-7929508 | None:intergenic | 25.0% |
! | TTCTTATTGGTCAAAAACAA+TGG | - | chr6_3:7929502-7929521 | None:intergenic | 25.0% |
!!! | TTGTTTTTCTCACTTCTTAT+TGG | - | chr6_3:7929515-7929534 | None:intergenic | 25.0% |
! | TCATCAAAATTGTCATCAAA+TGG | + | chr6_3:7929540-7929559 | Msa0936960:intron | 25.0% |
! | ATGGATGTCAAAATATCAAA+TGG | + | chr6_3:7929559-7929578 | Msa0936960:intron | 25.0% |
!! | AATTTGAGATGATAAGTTGT+AGG | + | chr6_3:7929748-7929767 | Msa0936960:intron | 25.0% |
! | TGTCTTTGATACTACATTTA+TGG | - | chr6_3:7929776-7929795 | None:intergenic | 25.0% |
!!! | TACAGTTTTTTAAGGATTGT+AGG | - | chr6_3:7929939-7929958 | None:intergenic | 25.0% |
! | TGCAACATTATATAATCAGA+GGG | - | chr6_3:7929992-7930011 | None:intergenic | 25.0% |
! | TTAAGAAAATGGAAAAGTGA+AGG | - | chr6_3:7930150-7930169 | None:intergenic | 25.0% |
! | TGGAAAACGTATTAAGAAAA+TGG | - | chr6_3:7930161-7930180 | None:intergenic | 25.0% |
!!! | TTTTTTTGTATATGCTCTTG+AGG | + | chr6_3:7930793-7930812 | Msa0936960:intron | 25.0% |
!!! | AAGATTTGTTGAATAAGTGT+TGG | - | chr6_3:7931136-7931155 | None:intergenic | 25.0% |
! | CAATATGTATTTAGAAACAG+AGG | - | chr6_3:7931524-7931543 | None:intergenic | 25.0% |
! | ATTAACATGAATGAAATGAC+TGG | - | chr6_3:7931550-7931569 | None:intergenic | 25.0% |
! | TGTGGTACACAAATAATAAT+TGG | + | chr6_3:7931641-7931660 | Msa0936960:intron | 25.0% |
!!! | TTGTTTCTAATAGACATTGA+AGG | - | chr6_3:7932018-7932037 | None:intergenic | 25.0% |
! | CAACAATACTACGATATAAT+TGG | + | chr6_3:7932107-7932126 | Msa0936960:intron | 25.0% |
! | TACACCAGTATTATGAAAAT+TGG | - | chr6_3:7932195-7932214 | None:intergenic | 25.0% |
!! | TTTCTTCCTTTTGTATAGAA+TGG | + | chr6_3:7932233-7932252 | Msa0936960:intron | 25.0% |
!! | TTCTTCCTTTTGTATAGAAT+GGG | + | chr6_3:7932234-7932253 | Msa0936960:intron | 25.0% |
! | CACCTCTTTATAAATATGTT+TGG | + | chr6_3:7932358-7932377 | Msa0936960:intron | 25.0% |
!! | TATAAATATGTTTGGATTGG+TGG | + | chr6_3:7932366-7932385 | Msa0936960:intron | 25.0% |
! | TGGGATCTTAAAAAAAATCA+TGG | - | chr6_3:7932417-7932436 | None:intergenic | 25.0% |
!!! | TTTTAGGAAAAGTTACGTTT+GGG | - | chr6_3:7932436-7932455 | None:intergenic | 25.0% |
!!! | ATTTTAGGAAAAGTTACGTT+TGG | - | chr6_3:7932437-7932456 | None:intergenic | 25.0% |
! | TTCATATTAGAGATAGTAGT+TGG | + | chr6_3:7932561-7932580 | Msa0936960:intron | 25.0% |
! | GATGTGATTACCTAATATAA+GGG | + | chr6_3:7932626-7932645 | Msa0936960:intron | 25.0% |
! | GATGTAATCACCTTATATAA+GGG | - | chr6_3:7932694-7932713 | None:intergenic | 25.0% |
! | AGATGTAATCACCTTATATA+AGG | - | chr6_3:7932695-7932714 | None:intergenic | 25.0% |
!! | GATGAAGTTGTTCAAATTTT+TGG | + | chr6_3:7933010-7933029 | Msa0936960:CDS | 25.0% |
!! | TTTGACTGATGAAATTTTTC+CGG | - | chr6_3:7933074-7933093 | None:intergenic | 25.0% |
!!! | ACGTTATAACCATTAGTTTT+TGG | - | chr6_3:7933154-7933173 | None:intergenic | 25.0% |
! | ACAATAGTTGAAGGAAAATT+AGG | - | chr6_3:7933409-7933428 | None:intergenic | 25.0% |
!! | TCTTTTGTAACAATAGTTGA+AGG | - | chr6_3:7933418-7933437 | None:intergenic | 25.0% |
! | AACAACATAACATGCTTATA+AGG | - | chr6_3:7933445-7933464 | None:intergenic | 25.0% |
!! | TATAGTGCTTTTAGTATGTT+TGG | + | chr6_3:7933581-7933600 | Msa0936960:three_prime_UTR | 25.0% |
GGTTTCTATATTGATCACTA+GGG | - | chr6_3:7927819-7927838 | None:intergenic | 30.0% | |
TGGTTTCTATATTGATCACT+AGG | - | chr6_3:7927820-7927839 | None:intergenic | 30.0% | |
AAAAGAAAGGAAAGTCAATG+TGG | - | chr6_3:7927850-7927869 | None:intergenic | 30.0% | |
! | AAGAACCACTCATAATTTGT+AGG | + | chr6_3:7927925-7927944 | Msa0936960:five_prime_UTR | 30.0% |
ACATAGTAGCACAAATATCT+TGG | - | chr6_3:7927961-7927980 | None:intergenic | 30.0% | |
AAATTGTTTGAGCTCAAGAA+AGG | + | chr6_3:7928050-7928069 | Msa0936960:CDS | 30.0% | |
TTGTATTTACCATTCTTGTC+AGG | - | chr6_3:7928131-7928150 | None:intergenic | 30.0% | |
ATCAAACTAGAATGTTCAAC+TGG | + | chr6_3:7928235-7928254 | Msa0936960:intron | 30.0% | |
AAGTTAGGTGATATTGTTCT+TGG | + | chr6_3:7928292-7928311 | Msa0936960:CDS | 30.0% | |
ATGACTTACAGTATATGCTT+CGG | - | chr6_3:7928329-7928348 | None:intergenic | 30.0% | |
CAAAGAATTGAAGAAAGACT+TGG | - | chr6_3:7928440-7928459 | None:intergenic | 30.0% | |
TTCATAGAAGAAAAGATGTG+TGG | - | chr6_3:7928471-7928490 | None:intergenic | 30.0% | |
! | ACACATCTTTTCTTCTATGA+AGG | + | chr6_3:7928470-7928489 | Msa0936960:intron | 30.0% |
! | TTGATATAGTATAGCACTGA+TGG | + | chr6_3:7929032-7929051 | Msa0936960:intron | 30.0% |
ACCACAAAATATCCAACTTT+GGG | + | chr6_3:7929344-7929363 | Msa0936960:intron | 30.0% | |
!!! | AACCACTTTTTGACAACTTT+TGG | + | chr6_3:7929417-7929436 | Msa0936960:intron | 30.0% |
!! | ATTTGGTGTTCCCTAAAAAA+AGG | + | chr6_3:7929635-7929654 | Msa0936960:intron | 30.0% |
TAGGATTTCAACTAGAATCA+TGG | + | chr6_3:7929854-7929873 | Msa0936960:intron | 30.0% | |
AGGATTTCAACTAGAATCAT+GGG | + | chr6_3:7929855-7929874 | Msa0936960:intron | 30.0% | |
!! | TGTGAATTTTAATAGACCAG+GGG | - | chr6_3:7929916-7929935 | None:intergenic | 30.0% |
!! | GTGTGAATTTTAATAGACCA+GGG | - | chr6_3:7929917-7929936 | None:intergenic | 30.0% |
!!! | GTTCATGGTACAGTTTTTTA+AGG | - | chr6_3:7929947-7929966 | None:intergenic | 30.0% |
TTATATAATCAGAGGGTTCA+TGG | - | chr6_3:7929985-7930004 | None:intergenic | 30.0% | |
GTGCAACATTATATAATCAG+AGG | - | chr6_3:7929993-7930012 | None:intergenic | 30.0% | |
AAAATGGAAAAGTGAAGGAA+GGG | - | chr6_3:7930145-7930164 | None:intergenic | 30.0% | |
TTACATGCATAATGTAGACA+TGG | - | chr6_3:7930181-7930200 | None:intergenic | 30.0% | |
! | TATGCATGTAAACTTTTGAG+TGG | + | chr6_3:7930190-7930209 | Msa0936960:intron | 30.0% |
!! | TTTGGTACATGATTTTTGGA+TGG | + | chr6_3:7930411-7930430 | Msa0936960:intron | 30.0% |
ATACAATTCAGTTTATCTCC+TGG | + | chr6_3:7930619-7930638 | Msa0936960:intron | 30.0% | |
!!! | TAGTTTTTTAGGAATCACTC+TGG | + | chr6_3:7930645-7930664 | Msa0936960:intron | 30.0% |
!!! | TCTTTTCATTGGTGTTAGTT+GGG | + | chr6_3:7930932-7930951 | Msa0936960:intron | 30.0% |
!! | AATAAGTGTTGGCGATTTAA+AGG | - | chr6_3:7931125-7931144 | None:intergenic | 30.0% |
! | CTTCAATGGCAATTCTAAAA+AGG | - | chr6_3:7931249-7931268 | None:intergenic | 30.0% |
CAGAATGATTCATCATACTT+TGG | + | chr6_3:7931369-7931388 | Msa0936960:intron | 30.0% | |
TGTATTTAGAAACAGAGGAA+GGG | - | chr6_3:7931519-7931538 | None:intergenic | 30.0% | |
ATGTATTTAGAAACAGAGGA+AGG | - | chr6_3:7931520-7931539 | None:intergenic | 30.0% | |
TAGATCAGTAAATGCATGAT+TGG | + | chr6_3:7931589-7931608 | Msa0936960:intron | 30.0% | |
CATTTCACCATATAGAAACA+TGG | + | chr6_3:7931820-7931839 | Msa0936960:intron | 30.0% | |
! | TTAAGAGCCATGTTTCTATA+TGG | - | chr6_3:7931830-7931849 | None:intergenic | 30.0% |
ATGGTAACTGAATTTGATCA+GGG | - | chr6_3:7931936-7931955 | None:intergenic | 30.0% | |
TATGGTAACTGAATTTGATC+AGG | - | chr6_3:7931937-7931956 | None:intergenic | 30.0% | |
!!! | TTCAGTTACCATAGTTTTGA+TGG | + | chr6_3:7931944-7931963 | Msa0936960:CDS | 30.0% |
! | TCTAGTTCAACTAGTTGAAT+CGG | + | chr6_3:7932159-7932178 | Msa0936960:intron | 30.0% |
AGTATCCCATTCTATACAAA+AGG | - | chr6_3:7932242-7932261 | None:intergenic | 30.0% | |
! | CGTAACTTTTCCTAAAATCA+TGG | + | chr6_3:7932439-7932458 | Msa0936960:intron | 30.0% |
! | AACTTTTCCTAAAATCATGG+TGG | + | chr6_3:7932442-7932461 | Msa0936960:intron | 30.0% |
ATACATAGAAAGGGATGTAA+AGG | - | chr6_3:7932538-7932557 | None:intergenic | 30.0% | |
GGATGTGATTACCTAATATA+AGG | + | chr6_3:7932625-7932644 | Msa0936960:intron | 30.0% | |
!! | ATGAAAGGTACCCTTATATT+AGG | - | chr6_3:7932639-7932658 | None:intergenic | 30.0% |
TGCTTGCATAATTATGGTTA+GGG | - | chr6_3:7932906-7932925 | None:intergenic | 30.0% | |
TTGCTTGCATAATTATGGTT+AGG | - | chr6_3:7932907-7932926 | None:intergenic | 30.0% | |
! | AGCTTTTGCTTGCATAATTA+TGG | - | chr6_3:7932912-7932931 | None:intergenic | 30.0% |
TTAACTAAGTTTACTGGTGT+AGG | - | chr6_3:7932944-7932963 | None:intergenic | 30.0% | |
GGAATAAGGTTATTGTCAAA+AGG | - | chr6_3:7933049-7933068 | None:intergenic | 30.0% | |
! | AAATTTTTCCGGTTGGAATA+AGG | - | chr6_3:7933063-7933082 | None:intergenic | 30.0% |
GGAAAAATTTCATCAGTCAA+AGG | + | chr6_3:7933073-7933092 | Msa0936960:CDS | 30.0% | |
GGAAAATTAGAGAACAAAGA+AGG | + | chr6_3:7933193-7933212 | Msa0936960:CDS | 30.0% | |
AGAGAACAAAGAAGGATTAA+AGG | + | chr6_3:7933201-7933220 | Msa0936960:CDS | 30.0% | |
!! | ATAGTGATGGATAAGAAATC+AGG | + | chr6_3:7933232-7933251 | Msa0936960:CDS | 30.0% |
!! | TAGTGATGGATAAGAAATCA+GGG | + | chr6_3:7933233-7933252 | Msa0936960:CDS | 30.0% |
TTAGGATGATTAACAGAATC+AGG | - | chr6_3:7933391-7933410 | None:intergenic | 30.0% | |
! | TAGAATTGTGAAAAAGCATG+TGG | - | chr6_3:7933487-7933506 | None:intergenic | 30.0% |
! | AAAGCACTATAGATAGTACA+AGG | - | chr6_3:7933572-7933591 | None:intergenic | 30.0% |
ATTAGCACAACTTGACACTA+TGG | + | chr6_3:7927760-7927779 | Msa0936960:five_prime_UTR | 35.0% | |
! | ACTTGACACTATGGAGTATT+AGG | + | chr6_3:7927769-7927788 | Msa0936960:five_prime_UTR | 35.0% |
ATATTGATCACTAGGGAATG+TGG | - | chr6_3:7927812-7927831 | None:intergenic | 35.0% | |
AAGAGAAGTTTCAACTTCGA+GGG | - | chr6_3:7927876-7927895 | None:intergenic | 35.0% | |
AAAGAGAAGTTTCAACTTCG+AGG | - | chr6_3:7927877-7927896 | None:intergenic | 35.0% | |
CATCATTCTTCTCCTTCTTA+TGG | - | chr6_3:7928025-7928044 | None:intergenic | 35.0% | |
GAAAGGTGATCTTACTTTGA+AGG | + | chr6_3:7928067-7928086 | Msa0936960:CDS | 35.0% | |
! | TTACTTTGAAGGTCACTAAC+TGG | + | chr6_3:7928078-7928097 | Msa0936960:CDS | 35.0% |
! | TACTTTGAAGGTCACTAACT+GGG | + | chr6_3:7928079-7928098 | Msa0936960:CDS | 35.0% |
ATTTACCATTCTTGTCAGGT+AGG | - | chr6_3:7928127-7928146 | None:intergenic | 35.0% | |
AAGCAACAATTAATGGAGGA+TGG | - | chr6_3:7928188-7928207 | None:intergenic | 35.0% | |
TGACTTACAGTATATGCTTC+GGG | - | chr6_3:7928328-7928347 | None:intergenic | 35.0% | |
AAGGAGGAGATAAGAAATAG+AGG | - | chr6_3:7928615-7928634 | None:intergenic | 35.0% | |
! | CTATTTCTTATCTCCTCCTT+TGG | + | chr6_3:7928615-7928634 | Msa0936960:intron | 35.0% |
AAGATGACTAGATATCGTCA+CGG | - | chr6_3:7928647-7928666 | None:intergenic | 35.0% | |
!!! | TCATCCATTTTGAAGTATCG+TGG | - | chr6_3:7928724-7928743 | None:intergenic | 35.0% |
GATACTCATCTGATACGTAT+CGG | - | chr6_3:7928795-7928814 | None:intergenic | 35.0% | |
TATCGGTGCAGGATAATTAT+TGG | - | chr6_3:7928886-7928905 | None:intergenic | 35.0% | |
!!! | AGTACTGATGTGTTCTGTTT+TGG | + | chr6_3:7928956-7928975 | Msa0936960:intron | 35.0% |
! | ATTTTTCCGTATCAGCGTAT+CGG | + | chr6_3:7929273-7929292 | Msa0936960:intron | 35.0% |
CACCACAAAATATCCAACTT+TGG | + | chr6_3:7929343-7929362 | Msa0936960:intron | 35.0% | |
CCACAAAATATCCAACTTTG+GGG | + | chr6_3:7929345-7929364 | Msa0936960:intron | 35.0% | |
GTCCAAAAGTTGTCAAAAAG+TGG | - | chr6_3:7929422-7929441 | None:intergenic | 35.0% | |
AAAGAGAAAAAGGAAGAGAG+AGG | - | chr6_3:7929479-7929498 | None:intergenic | 35.0% | |
TAATTTAGTAGCTCAGCTGT+TGG | + | chr6_3:7929675-7929694 | Msa0936960:intron | 35.0% | |
TGTGGCAACTTCTTCTTTAT+AGG | + | chr6_3:7929835-7929854 | Msa0936960:intron | 35.0% | |
ATTTCAACTAGAATCATGGG+CGG | + | chr6_3:7929858-7929877 | Msa0936960:intron | 35.0% | |
!! | GTGAATTTTAATAGACCAGG+GGG | - | chr6_3:7929915-7929934 | None:intergenic | 35.0% |
!! | GGTGTGAATTTTAATAGACC+AGG | - | chr6_3:7929918-7929937 | None:intergenic | 35.0% |
!! | TTCATGGTCAGTTTTTAAGG+GGG | - | chr6_3:7929969-7929988 | None:intergenic | 35.0% |
!! | GTTCATGGTCAGTTTTTAAG+GGG | - | chr6_3:7929970-7929989 | None:intergenic | 35.0% |
! | GGTTCATGGTCAGTTTTTAA+GGG | - | chr6_3:7929971-7929990 | None:intergenic | 35.0% |
AAAAGATACAAGTTCAGTGC+TGG | - | chr6_3:7930037-7930056 | None:intergenic | 35.0% | |
ATATTGTGTGGTTGCAATAG+TGG | - | chr6_3:7930083-7930102 | None:intergenic | 35.0% | |
GAAAATGGAAAAGTGAAGGA+AGG | - | chr6_3:7930146-7930165 | None:intergenic | 35.0% | |
CATCTCAAGAAGTTCATTCT+TGG | - | chr6_3:7930299-7930318 | None:intergenic | 35.0% | |
TGCTTTATGTAATGCAGATG+CGG | + | chr6_3:7930344-7930363 | Msa0936960:intron | 35.0% | |
!! | GAGGTTTGGTACATGATTTT+TGG | + | chr6_3:7930407-7930426 | Msa0936960:intron | 35.0% |
!! | TACATGATTTTTGGATGGCT+TGG | + | chr6_3:7930416-7930435 | Msa0936960:intron | 35.0% |
!! | GTCCTTCCTATTGATTTGTT+GGG | + | chr6_3:7930449-7930468 | Msa0936960:intron | 35.0% |
GAAAGACCCAACAAATCAAT+AGG | - | chr6_3:7930458-7930477 | None:intergenic | 35.0% | |
ATTCCTAAAAAACTAGTGCC+AGG | - | chr6_3:7930640-7930659 | None:intergenic | 35.0% | |
! | ACTCATAATGGAAACAAGGA+TGG | - | chr6_3:7930671-7930690 | None:intergenic | 35.0% |
! | ATCCTTGTTTCCATTATGAG+TGG | + | chr6_3:7930670-7930689 | Msa0936960:intron | 35.0% |
! | TCCTTGTTTCCATTATGAGT+GGG | + | chr6_3:7930671-7930690 | Msa0936960:intron | 35.0% |
!!! | CTCTTTTCATTGGTGTTAGT+TGG | + | chr6_3:7930931-7930950 | Msa0936960:intron | 35.0% |
!! | TTGGTTAATGCAGAGTATTG+AGG | - | chr6_3:7931678-7931697 | None:intergenic | 35.0% |
! | GTGGAAAAGTATGTAAGAGA+AGG | + | chr6_3:7931902-7931921 | Msa0936960:CDS | 35.0% |
TGGTAACTGAATTTGATCAG+GGG | - | chr6_3:7931935-7931954 | None:intergenic | 35.0% | |
CTTCTTCACCATCAAAACTA+TGG | - | chr6_3:7931955-7931974 | None:intergenic | 35.0% | |
!!! | CATAGTTTTGATGGTGAAGA+AGG | + | chr6_3:7931953-7931972 | Msa0936960:CDS | 35.0% |
ATTGGAATCAAACCAACTGA+AGG | + | chr6_3:7932125-7932144 | Msa0936960:intron | 35.0% | |
TTATGAAAATTGGTCCGAAC+TGG | - | chr6_3:7932185-7932204 | None:intergenic | 35.0% | |
! | CGGACCAATTTTCATAATAC+TGG | + | chr6_3:7932188-7932207 | Msa0936960:intron | 35.0% |
!! | GGGATACTTCTAAAACAAAG+TGG | + | chr6_3:7932254-7932273 | Msa0936960:intron | 35.0% |
! | CAACTAACCACCATGATTTT+AGG | - | chr6_3:7932452-7932471 | None:intergenic | 35.0% |
TCACTACATGTTTGATGTGA+CGG | - | chr6_3:7932492-7932511 | None:intergenic | 35.0% | |
CACATCCTAAATAGACATCA+AGG | - | chr6_3:7932612-7932631 | None:intergenic | 35.0% | |
ATTTGCATTACAGGATTTCC+TGG | + | chr6_3:7932839-7932858 | Msa0936960:intron | 35.0% | |
! | TGTAGCTTACAGTTACTTTG+AGG | - | chr6_3:7932868-7932887 | None:intergenic | 35.0% |
GTAACTGTAAGCTACATTCT+AGG | + | chr6_3:7932872-7932891 | Msa0936960:CDS | 35.0% | |
GCATGGTTAACTAAGTTTAC+TGG | - | chr6_3:7932950-7932969 | None:intergenic | 35.0% | |
ACTTAGTTAACCATGCCTAT+TGG | + | chr6_3:7932954-7932973 | Msa0936960:CDS | 35.0% | |
GACAATAACCTTATTCCAAC+CGG | + | chr6_3:7933052-7933071 | Msa0936960:CDS | 35.0% | |
! | ACTGATGAAATTTTTCCGGT+TGG | - | chr6_3:7933070-7933089 | None:intergenic | 35.0% |
! | TGTGGCTTTACGAAATCATT+TGG | - | chr6_3:7933103-7933122 | None:intergenic | 35.0% |
TTCGTAAAGCCACAAATTGT+TGG | + | chr6_3:7933109-7933128 | Msa0936960:CDS | 35.0% | |
ATTCTTGCACCAACAATTTG+TGG | - | chr6_3:7933121-7933140 | None:intergenic | 35.0% | |
GCACTATAAAATTGCAATCC+AGG | - | chr6_3:7933286-7933305 | None:intergenic | 35.0% | |
GTGAAGAATGATAAGGGAAA+AGG | + | chr6_3:7933313-7933332 | Msa0936960:CDS | 35.0% | |
AAGAATGATAAGGGAAAAGG+AGG | + | chr6_3:7933316-7933335 | Msa0936960:CDS | 35.0% | |
AGAATGATAAGGGAAAAGGA+GGG | + | chr6_3:7933317-7933336 | Msa0936960:CDS | 35.0% | |
! | TGAAAAAGCATGTGGAACTT+CGG | - | chr6_3:7933479-7933498 | None:intergenic | 35.0% |
AAAGTCAATGTGGCTGCTTA+TGG | - | chr6_3:7927840-7927859 | None:intergenic | 40.0% | |
ACTTCGAGGGGAAAAAAGAA+AGG | - | chr6_3:7927863-7927882 | None:intergenic | 40.0% | |
AGAGAAGTTTCAACTTCGAG+GGG | - | chr6_3:7927875-7927894 | None:intergenic | 40.0% | |
! | CTTCTCTTCTTAGCTGTTTC+TGG | + | chr6_3:7927981-7928000 | Msa0936960:CDS | 40.0% |
!! | GCTGTTTCTGGATTTGTCAA+TGG | + | chr6_3:7927993-7928012 | Msa0936960:CDS | 40.0% |
CAATGGCTCAATCCATAAGA+AGG | + | chr6_3:7928010-7928029 | Msa0936960:CDS | 40.0% | |
! | ACTTTGAAGGTCACTAACTG+GGG | + | chr6_3:7928080-7928099 | Msa0936960:CDS | 40.0% |
TTAGTCCTACCTGACAAGAA+TGG | + | chr6_3:7928119-7928138 | Msa0936960:CDS | 40.0% | |
GAAGCCACGATACTTCAAAA+TGG | + | chr6_3:7928717-7928736 | Msa0936960:intron | 40.0% | |
!! | GATACGTATCGGAAAGTATC+AGG | - | chr6_3:7928784-7928803 | None:intergenic | 40.0% |
! | TGATACGTATCGGGAAGTAT+CGG | - | chr6_3:7928854-7928873 | None:intergenic | 40.0% |
ATACTCTCCTGATACGTATC+GGG | - | chr6_3:7928863-7928882 | None:intergenic | 40.0% | |
GATACTCTCCTGATACGTAT+CGG | - | chr6_3:7928864-7928883 | None:intergenic | 40.0% | |
TAATTGGGAAATATCGGAGC+AGG | - | chr6_3:7928909-7928928 | None:intergenic | 40.0% | |
AATCAAGATACGATACGGCT+GGG | - | chr6_3:7929247-7929266 | None:intergenic | 40.0% | |
AAATCAAGATACGATACGGC+TGG | - | chr6_3:7929248-7929267 | None:intergenic | 40.0% | |
! | CCCCAAAGTTGGATATTTTG+TGG | - | chr6_3:7929348-7929367 | None:intergenic | 40.0% |
TAAAATGTGCACCCCAAAGT+TGG | - | chr6_3:7929359-7929378 | None:intergenic | 40.0% | |
!! | TCAGTTTTTAAGGGGGTTCA+TGG | - | chr6_3:7929962-7929981 | None:intergenic | 40.0% |
! | GGGTTCATGGTCAGTTTTTA+AGG | - | chr6_3:7929972-7929991 | None:intergenic | 40.0% |
ATAGCACTGCACATATTGTG+TGG | - | chr6_3:7930095-7930114 | None:intergenic | 40.0% | |
AAGGGTCAGAATGTGGTTAT+AGG | - | chr6_3:7930127-7930146 | None:intergenic | 40.0% | |
! | AGTCACCTTTTTGTTACCTG+TGG | + | chr6_3:7930375-7930394 | Msa0936960:intron | 40.0% |
! | GTCACCTTTTTGTTACCTGT+GGG | + | chr6_3:7930376-7930395 | Msa0936960:intron | 40.0% |
! | TCACCTTTTTGTTACCTGTG+GGG | + | chr6_3:7930377-7930396 | Msa0936960:intron | 40.0% |
AAACCCCACAGGTAACAAAA+AGG | - | chr6_3:7930383-7930402 | None:intergenic | 40.0% | |
!!! | TGATTTTTGGATGGCTTGGT+TGG | + | chr6_3:7930420-7930439 | Msa0936960:intron | 40.0% |
!!! | GATTTTTGGATGGCTTGGTT+GGG | + | chr6_3:7930421-7930440 | Msa0936960:intron | 40.0% |
!! | GGTCCTTCCTATTGATTTGT+TGG | + | chr6_3:7930448-7930467 | Msa0936960:intron | 40.0% |
GACCCAACAAATCAATAGGA+AGG | - | chr6_3:7930454-7930473 | None:intergenic | 40.0% | |
!! | TGATTTGTTGGGTCTTTCTG+AGG | + | chr6_3:7930460-7930479 | Msa0936960:intron | 40.0% |
!! | GATTTGTTGGGTCTTTCTGA+GGG | + | chr6_3:7930461-7930480 | Msa0936960:intron | 40.0% |
! | ATTTGTTGGGTCTTTCTGAG+GGG | + | chr6_3:7930462-7930481 | Msa0936960:intron | 40.0% |
!! | GTTTCCTAGCAGAGAGTATT+AGG | + | chr6_3:7930493-7930512 | Msa0936960:intron | 40.0% |
TACACCTAATACTCTCTGCT+AGG | - | chr6_3:7930500-7930519 | None:intergenic | 40.0% | |
!!! | TCTCCTGGCACTAGTTTTTT+AGG | + | chr6_3:7930634-7930653 | Msa0936960:intron | 40.0% |
! | ACCCACTCATAATGGAAACA+AGG | - | chr6_3:7930675-7930694 | None:intergenic | 40.0% |
TTGTTTCCATTATGAGTGGG+TGG | + | chr6_3:7930674-7930693 | Msa0936960:intron | 40.0% | |
GTATATGCTCTTGAGGTAGT+AGG | + | chr6_3:7930800-7930819 | Msa0936960:intron | 40.0% | |
TTTCTATCCCGTCTTTGGAT+GGG | + | chr6_3:7930900-7930919 | Msa0936960:intron | 40.0% | |
!! | GGGGTGTTTTCTCTTTTCAT+TGG | + | chr6_3:7930921-7930940 | Msa0936960:intron | 40.0% |
TGAGAGTAAGCAAGCTTCAA+TGG | - | chr6_3:7931263-7931282 | None:intergenic | 40.0% | |
GGAGCTCAGTTTACTCTAAA+TGG | + | chr6_3:7931426-7931445 | Msa0936960:CDS | 40.0% | |
GAAGGAAACAACACTCTTCA+TGG | + | chr6_3:7931474-7931493 | Msa0936960:CDS | 40.0% | |
AGAACATCACTGAATCCTCT+AGG | - | chr6_3:7931875-7931894 | None:intergenic | 40.0% | |
GAGGATTCAGTGATGTTCTT+TGG | + | chr6_3:7931876-7931895 | Msa0936960:CDS | 40.0% | |
! | CAGTGATGTTCTTTGGAAAG+TGG | + | chr6_3:7931883-7931902 | Msa0936960:CDS | 40.0% |
AATCAAACCAACTGAAGGAG+TGG | + | chr6_3:7932130-7932149 | Msa0936960:intron | 40.0% | |
!! | ATATGTTTGGATTGGTGGCT+AGG | + | chr6_3:7932371-7932390 | Msa0936960:intron | 40.0% |
GGTACATTGTTCGAGTAACA+TGG | + | chr6_3:7932582-7932601 | Msa0936960:intron | 40.0% | |
GCTGTCCTTGATGTCTATTT+AGG | + | chr6_3:7932604-7932623 | Msa0936960:intron | 40.0% | |
CTAAAATGTTGCCACTGTTG+TGG | - | chr6_3:7932991-7933010 | None:intergenic | 40.0% | |
AAAGGTTGCAGCTATAGTGA+TGG | + | chr6_3:7933219-7933238 | Msa0936960:CDS | 40.0% | |
AAGCTTAGTACTAATGCTCC+TGG | + | chr6_3:7933265-7933284 | Msa0936960:CDS | 40.0% | |
ATCGTCACGGATCATTCCAA+AGG | - | chr6_3:7928634-7928653 | None:intergenic | 45.0% | |
!! | GGAAAGTATCAGGCAGGTAT+CGG | - | chr6_3:7928774-7928793 | None:intergenic | 45.0% |
GATACTTCCCGATACGTATC+AGG | + | chr6_3:7928853-7928872 | Msa0936960:intron | 45.0% | |
GGAAATATCGGAGCAGGTAT+CGG | - | chr6_3:7928903-7928922 | None:intergenic | 45.0% | |
!!! | AGCACTGATGGTGCTCTTTT+TGG | + | chr6_3:7929044-7929063 | Msa0936960:intron | 45.0% |
!! | GCACTGATGGTGCTCTTTTT+GGG | + | chr6_3:7929045-7929064 | Msa0936960:intron | 45.0% |
ATGTGCTACGAGCTTATGAC+TGG | + | chr6_3:7929135-7929154 | Msa0936960:intron | 45.0% | |
TGTGGTGCATATGTGAAGCT+CGG | - | chr6_3:7929330-7929349 | None:intergenic | 45.0% | |
! | TGTGTTGATCTGACTCTCTG+TGG | + | chr6_3:7930524-7930543 | Msa0936960:intron | 45.0% |
GACGCTGGATGTAGAACAAT+TGG | + | chr6_3:7930593-7930612 | Msa0936960:intron | 45.0% | |
TTTCCATTATGAGTGGGTGG+TGG | + | chr6_3:7930677-7930696 | Msa0936960:intron | 45.0% | |
TATTGGTCCCAGCAGATTGA+TGG | - | chr6_3:7930705-7930724 | None:intergenic | 45.0% | |
CTGGGACCAATAGATTACGA+GGG | + | chr6_3:7930713-7930732 | Msa0936960:intron | 45.0% | |
ACTCCTCCCTCGTAATCTAT+TGG | - | chr6_3:7930722-7930741 | None:intergenic | 45.0% | |
CAACTGGAATCCATGCTCAA+AGG | - | chr6_3:7930757-7930776 | None:intergenic | 45.0% | |
TTATTTCATCTCCCGAGAGG+TGG | + | chr6_3:7930824-7930843 | Msa0936960:intron | 45.0% | |
TATTTCATCTCCCGAGAGGT+GGG | + | chr6_3:7930825-7930844 | Msa0936960:intron | 45.0% | |
AAAAACAAAGCCCACCTCTC+GGG | - | chr6_3:7930838-7930857 | None:intergenic | 45.0% | |
CAAAAACAAAGCCCACCTCT+CGG | - | chr6_3:7930839-7930858 | None:intergenic | 45.0% | |
!!! | GAGAGGTGGGCTTTGTTTTT+GGG | + | chr6_3:7930838-7930857 | Msa0936960:intron | 45.0% |
GTTTCTATCCCGTCTTTGGA+TGG | + | chr6_3:7930899-7930918 | Msa0936960:intron | 45.0% | |
TTCTATCCCGTCTTTGGATG+GGG | + | chr6_3:7930901-7930920 | Msa0936960:intron | 45.0% | |
AAAACACCCCCATCCAAAGA+CGG | - | chr6_3:7930911-7930930 | None:intergenic | 45.0% | |
GAGTCGTGTGATAGATGTGA+TGG | - | chr6_3:7931166-7931185 | None:intergenic | 45.0% | |
!! | TCATACTTTGGAGCAACCGT+TGG | + | chr6_3:7931381-7931400 | Msa0936960:CDS | 45.0% |
TCTGTTAGCAACCCTACCAA+CGG | - | chr6_3:7931400-7931419 | None:intergenic | 45.0% | |
GGTAGGGTTGCTAACAGAAT+TGG | + | chr6_3:7931402-7931421 | Msa0936960:CDS | 45.0% | |
AGGGTTGCTAACAGAATTGG+AGG | + | chr6_3:7931405-7931424 | Msa0936960:CDS | 45.0% | |
CTTTACTTAGGTGGACCTAG+AGG | + | chr6_3:7931857-7931876 | Msa0936960:intron | 45.0% | |
AAAGAGACCACTCCTTCAGT+TGG | - | chr6_3:7932140-7932159 | None:intergenic | 45.0% | |
ACTAGTTGAATCGGCCAGTT+CGG | + | chr6_3:7932168-7932187 | Msa0936960:intron | 45.0% | |
!! | ACAGTTACTTTGAGGTCACC+AGG | - | chr6_3:7932860-7932879 | None:intergenic | 45.0% |
AACCATGCCTATTGGAACCT+AGG | + | chr6_3:7932962-7932981 | Msa0936960:CDS | 45.0% | |
TTCCTAGGTTCCAATAGGCA+TGG | - | chr6_3:7932967-7932986 | None:intergenic | 45.0% | |
GTGGTTTCCTAGGTTCCAAT+AGG | - | chr6_3:7932972-7932991 | None:intergenic | 45.0% | |
AACCTAGGAAACCACAACAG+TGG | + | chr6_3:7932977-7932996 | Msa0936960:CDS | 45.0% | |
ACCACGTTCAGCACTTTGTT+TGG | + | chr6_3:7933351-7933370 | Msa0936960:CDS | 45.0% | |
!! | TCCAAACAAAGTGCTGAACG+TGG | - | chr6_3:7933355-7933374 | None:intergenic | 45.0% |
! | AAAAGCATGTGGAACTTCGG+TGG | - | chr6_3:7933476-7933495 | None:intergenic | 45.0% |
!! | AAAAAATAAAATTTAATCTT+CGG | - | chr6_3:7928817-7928836 | None:intergenic | 5.0% |
GTCACGGATCATTCCAAAGG+AGG | - | chr6_3:7928631-7928650 | None:intergenic | 50.0% | |
TATCGGTGCAGAATACGCAG+AGG | - | chr6_3:7928757-7928776 | None:intergenic | 50.0% | |
!! | CGTATCGGAAAGTATCAGGC+AGG | - | chr6_3:7928780-7928799 | None:intergenic | 50.0% |
TAGGGTCATGCTAACGTGCT+TGG | - | chr6_3:7929601-7929620 | None:intergenic | 50.0% | |
GCGGAGCTACATATGTGTGA+GGG | + | chr6_3:7929877-7929896 | Msa0936960:intron | 50.0% | |
CGGAGCTACATATGTGTGAG+GGG | + | chr6_3:7929878-7929897 | Msa0936960:intron | 50.0% | |
GGAGCTACATATGTGTGAGG+GGG | + | chr6_3:7929879-7929898 | Msa0936960:intron | 50.0% | |
!! | CAGTGCTGGCAGTGTTTGAT+TGG | - | chr6_3:7930023-7930042 | None:intergenic | 50.0% |
GTGAAGGAAGGGTCAGAATG+TGG | - | chr6_3:7930134-7930153 | None:intergenic | 50.0% | |
TGATCTGACTCTCTGTGGTG+TGG | + | chr6_3:7930529-7930548 | Msa0936960:intron | 50.0% | |
TCTCTGTGGTGTGGTCTATC+TGG | + | chr6_3:7930538-7930557 | Msa0936960:intron | 50.0% | |
CTGGTCTGCTCGTAATGATC+TGG | + | chr6_3:7930557-7930576 | Msa0936960:intron | 50.0% | |
GTTCCACCACCCACTCATAA+TGG | - | chr6_3:7930683-7930702 | None:intergenic | 50.0% | |
TGGTGGAACCATCAATCTGC+TGG | + | chr6_3:7930694-7930713 | Msa0936960:intron | 50.0% | |
GGTGGAACCATCAATCTGCT+GGG | + | chr6_3:7930695-7930714 | Msa0936960:intron | 50.0% | |
GCTGGGACCAATAGATTACG+AGG | + | chr6_3:7930712-7930731 | Msa0936960:intron | 50.0% | |
GGACCAATAGATTACGAGGG+AGG | + | chr6_3:7930716-7930735 | Msa0936960:intron | 50.0% | |
! | TACGAGGGAGGAGTTTTGCT+TGG | + | chr6_3:7930728-7930747 | Msa0936960:intron | 50.0% |
! | ACGAGGGAGGAGTTTTGCTT+GGG | + | chr6_3:7930729-7930748 | Msa0936960:intron | 50.0% |
GGCTTATTTCATCTCCCGAG+AGG | + | chr6_3:7930821-7930840 | Msa0936960:intron | 50.0% | |
!!! | CGAGAGGTGGGCTTTGTTTT+TGG | + | chr6_3:7930837-7930856 | Msa0936960:intron | 50.0% |
!!! | AGGTGGGCTTTGTTTTTGGG+TGG | + | chr6_3:7930841-7930860 | Msa0936960:intron | 50.0% |
!!! | TGGGCTTTGTTTTTGGGTGG+AGG | + | chr6_3:7930844-7930863 | Msa0936960:intron | 50.0% |
!!! | GGGCTTTGTTTTTGGGTGGA+GGG | + | chr6_3:7930845-7930864 | Msa0936960:intron | 50.0% |
! | GTCCCTTGCTTGCCTTTTAG+CGG | + | chr6_3:7930867-7930886 | Msa0936960:intron | 50.0% |
! | TCCCTTGCTTGCCTTTTAGC+GGG | + | chr6_3:7930868-7930887 | Msa0936960:intron | 50.0% |
ACCCGCTAAAAGGCAAGCAA+GGG | - | chr6_3:7930872-7930891 | None:intergenic | 50.0% | |
! | GGGTGTTTCTATCCCGTCTT+TGG | + | chr6_3:7930895-7930914 | Msa0936960:intron | 50.0% |
TCTATCCCGTCTTTGGATGG+GGG | + | chr6_3:7930902-7930921 | Msa0936960:intron | 50.0% | |
AAACACCCCCATCCAAAGAC+GGG | - | chr6_3:7930910-7930929 | None:intergenic | 50.0% | |
!! | ACTTTGGAGCAACCGTTGGT+AGG | + | chr6_3:7931385-7931404 | Msa0936960:CDS | 50.0% |
!! | CTTTGGAGCAACCGTTGGTA+GGG | + | chr6_3:7931386-7931405 | Msa0936960:CDS | 50.0% |
TGCCACTGTTGTGGTTTCCT+AGG | - | chr6_3:7932982-7933001 | None:intergenic | 50.0% | |
! | ACTGCGCCGATACGCTGATA+CGG | - | chr6_3:7929282-7929301 | None:intergenic | 55.0% |
GGCGGAGCTACATATGTGTG+AGG | + | chr6_3:7929876-7929895 | Msa0936960:intron | 55.0% | |
TTACCTGTGGGGTTTCGTCG+AGG | + | chr6_3:7930388-7930407 | Msa0936960:intron | 55.0% | |
AAACCTCGACGAAACCCCAC+AGG | - | chr6_3:7930394-7930413 | None:intergenic | 55.0% | |
TGTGGGGTTTCGTCGAGGTT+TGG | + | chr6_3:7930393-7930412 | Msa0936960:intron | 55.0% | |
!! | TGGATGGCTTGGTTGGGAGT+TGG | + | chr6_3:7930427-7930446 | Msa0936960:intron | 55.0% |
GGTGTTCTCTGCTATGACGC+TGG | + | chr6_3:7930578-7930597 | Msa0936960:intron | 55.0% | |
TGCTTGGGTGCCTTTGAGCA+TGG | + | chr6_3:7930744-7930763 | Msa0936960:intron | 55.0% | |
CACCCGCTAAAAGGCAAGCA+AGG | - | chr6_3:7930873-7930892 | None:intergenic | 55.0% | |
!! | TGCTTGCCTTTTAGCGGGTG+TGG | + | chr6_3:7930873-7930892 | Msa0936960:intron | 55.0% |
!! | GCTTGCCTTTTAGCGGGTGT+GGG | + | chr6_3:7930874-7930893 | Msa0936960:intron | 55.0% |
!! | CTTGCCTTTTAGCGGGTGTG+GGG | + | chr6_3:7930875-7930894 | Msa0936960:intron | 55.0% |
AACACCCCACACCCGCTAAA+AGG | - | chr6_3:7930882-7930901 | None:intergenic | 55.0% | |
!! | ATCGGAGCAGGTATCGGTGC+AGG | - | chr6_3:7928897-7928916 | None:intergenic | 60.0% |
AAGTCTGAACCCCCTGCTCC+AGG | + | chr6_3:7930261-7930280 | Msa0936960:intron | 60.0% | |
AGTCTGAACCCCCTGCTCCA+GGG | + | chr6_3:7930262-7930281 | Msa0936960:intron | 60.0% | |
TTGCCAAGACCCTGGAGCAG+GGG | - | chr6_3:7930274-7930293 | None:intergenic | 60.0% | |
GTTGCCAAGACCCTGGAGCA+GGG | - | chr6_3:7930275-7930294 | None:intergenic | 60.0% | |
TCTTGGCGTTGCCAAGACCC+TGG | - | chr6_3:7930282-7930301 | None:intergenic | 60.0% | |
AACCCCCTGCTCCAGGGTCT+TGG | + | chr6_3:7930268-7930287 | Msa0936960:intron | 65.0% | |
TGCCAAGACCCTGGAGCAGG+GGG | - | chr6_3:7930273-7930292 | None:intergenic | 65.0% | |
CGTTGCCAAGACCCTGGAGC+AGG | - | chr6_3:7930276-7930295 | None:intergenic | 65.0% | |
GGGGGTTCAGCTGAACCCCC+TGG | + | chr6_3:7929897-7929916 | Msa0936960:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_3 | gene | 7927758 | 7933605 | 7927758 | ID=Msa0936960;Name=Msa0936960 |
chr6_3 | mRNA | 7927758 | 7933605 | 7927758 | ID=Msa0936960-mRNA-1;Parent=Msa0936960;Name=Msa0936960-mRNA-1;_AED=0.08;_eAED=0.08;_QI=193|1|1|1|1|1|5|98|375 |
chr6_3 | exon | 7927758 | 7928140 | 7927758 | ID=Msa0936960-mRNA-1:exon:2612;Parent=Msa0936960-mRNA-1 |
chr6_3 | exon | 7928290 | 7928339 | 7928290 | ID=Msa0936960-mRNA-1:exon:2613;Parent=Msa0936960-mRNA-1 |
chr6_3 | exon | 7931372 | 7931495 | 7931372 | ID=Msa0936960-mRNA-1:exon:2614;Parent=Msa0936960-mRNA-1 |
chr6_3 | exon | 7931867 | 7931974 | 7931867 | ID=Msa0936960-mRNA-1:exon:2615;Parent=Msa0936960-mRNA-1 |
chr6_3 | exon | 7932852 | 7933605 | 7932852 | ID=Msa0936960-mRNA-1:exon:2616;Parent=Msa0936960-mRNA-1 |
chr6_3 | five_prime_UTR | 7927758 | 7927950 | 7927758 | ID=Msa0936960-mRNA-1:five_prime_utr;Parent=Msa0936960-mRNA-1 |
chr6_3 | CDS | 7927951 | 7928140 | 7927951 | ID=Msa0936960-mRNA-1:cds;Parent=Msa0936960-mRNA-1 |
chr6_3 | CDS | 7928290 | 7928339 | 7928290 | ID=Msa0936960-mRNA-1:cds;Parent=Msa0936960-mRNA-1 |
chr6_3 | CDS | 7931372 | 7931495 | 7931372 | ID=Msa0936960-mRNA-1:cds;Parent=Msa0936960-mRNA-1 |
chr6_3 | CDS | 7931867 | 7931974 | 7931867 | ID=Msa0936960-mRNA-1:cds;Parent=Msa0936960-mRNA-1 |
chr6_3 | CDS | 7932852 | 7933507 | 7932852 | ID=Msa0936960-mRNA-1:cds;Parent=Msa0936960-mRNA-1 |
chr6_3 | three_prime_UTR | 7933508 | 7933605 | 7933508 | ID=Msa0936960-mRNA-1:three_prime_utr;Parent=Msa0936960-mRNA-1 |
Gene Sequence |
Protein sequence |