AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0936960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0936960 MtrunA17_Chr6g0452971 95.467 375 16 1 2 375 1 375 0.0 726
Msa0936960 MtrunA17_Chr6g0452991 94.133 375 21 1 2 375 1 375 0.0 719
Msa0936960 MtrunA17_Chr7g0217021 70.300 367 101 3 2 367 1 360 0.0 529
Msa0936960 MtrunA17_Chr4g0060521 52.786 341 152 4 25 364 23 355 2.94e-123 360
Msa0936960 MtrunA17_Chr6g0478501 49.415 342 166 5 28 367 3 339 3.87e-109 323
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0936960 AT3G47800.1 52.198 364 152 7 5 367 16 358 1.37e-127 371
Msa0936960 AT5G15140.1 55.988 334 140 5 33 365 160 487 1.45e-124 368
Msa0936960 AT3G17940.1 48.204 334 168 4 34 365 10 340 1.16e-108 322
Msa0936960 AT3G01260.1 43.114 334 160 8 33 365 119 423 9.69e-78 246

Find 87 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTCTTCTTAGCTGTTTC+TGG 0.037891 6_3:+7927981 Msa0936960:CDS
CATCATTCTTCTCCTTCTTA+TGG 0.188818 6_3:-7928022 None:intergenic
AAATTATGAGTGGTTCTTAA+TGG 0.202194 6_3:-7927920 None:intergenic
AGAGAACAAAGAAGGATTAA+AGG 0.218075 6_3:+7933201 Msa0936960:CDS
AACAACATAACATGCTTATA+AGG 0.235997 6_3:-7933442 None:intergenic
GGAGCTCAGTTTACTCTAAA+TGG 0.254147 6_3:+7931426 Msa0936960:CDS
GTTAATTATGTGCTTAATAA+AGG 0.261601 6_3:+7933172 Msa0936960:CDS
ACAATAGTTGAAGGAAAATT+AGG 0.263993 6_3:-7933406 None:intergenic
GAGGATTCAGTGATGTTCTT+TGG 0.270041 6_3:+7931876 Msa0936960:CDS
ACTTGACACTATGGAGTATT+AGG 0.299707 6_3:+7927769 Msa0936960:five_prime_UTR
GTAACTGTAAGCTACATTCT+AGG 0.323605 6_3:+7932872 Msa0936960:CDS
TAATTTGTTTCAGGAAAGTT+AGG 0.323657 6_3:+7928277 Msa0936960:intron
TTGCTTGCATAATTATGGTT+AGG 0.325838 6_3:-7932904 None:intergenic
TTACTTTGAAGGTCACTAAC+TGG 0.341785 6_3:+7928078 Msa0936960:CDS
AAGTTAGGTGATATTGTTCT+TGG 0.341881 6_3:+7928292 Msa0936960:CDS
ACCACGTTCAGCACTTTGTT+TGG 0.345777 6_3:+7933351 Msa0936960:CDS
GCATGGTTAACTAAGTTTAC+TGG 0.363669 6_3:-7932947 None:intergenic
TTAGGATGATTAACAGAATC+AGG 0.363742 6_3:-7933388 None:intergenic
AAAGTCAATGTGGCTGCTTA+TGG 0.373826 6_3:-7927837 None:intergenic
GCTGTTTCTGGATTTGTCAA+TGG 0.379680 6_3:+7927993 Msa0936960:CDS
ATTTGCATTACAGGATTTCC+TGG 0.381140 6_3:+7932839 Msa0936960:intron
TGTGGCTTTACGAAATCATT+TGG 0.385685 6_3:-7933100 None:intergenic
ATAGTGATGGATAAGAAATC+AGG 0.386833 6_3:+7933232 Msa0936960:CDS
GACAATAACCTTATTCCAAC+CGG 0.387603 6_3:+7933052 Msa0936960:CDS
GAAGGAAACAACACTCTTCA+TGG 0.387877 6_3:+7931474 Msa0936960:CDS
ACTTAGTTAACCATGCCTAT+TGG 0.388489 6_3:+7932954 Msa0936960:CDS
CATTAGCAATTAATTTGTAA+TGG 0.396328 6_3:-7931452 None:intergenic
CTTCTTCACCATCAAAACTA+TGG 0.396435 6_3:-7931952 None:intergenic
ATTAGCACAACTTGACACTA+TGG 0.396934 6_3:+7927760 Msa0936960:five_prime_UTR
CAGAATGATTCATCATACTT+TGG 0.398226 6_3:+7931369 Msa0936960:intron
GAAAGGTGATCTTACTTTGA+AGG 0.398453 6_3:+7928067 Msa0936960:CDS
GTGGTTTCCTAGGTTCCAAT+AGG 0.398598 6_3:-7932969 None:intergenic
TGCTTGCATAATTATGGTTA+GGG 0.403065 6_3:-7932903 None:intergenic
ATTCTTGCACCAACAATTTG+TGG 0.406236 6_3:-7933118 None:intergenic
AAGAACCACTCATAATTTGT+AGG 0.410958 6_3:+7927925 Msa0936960:five_prime_UTR
TTCGTAAAGCCACAAATTGT+TGG 0.411274 6_3:+7933109 Msa0936960:CDS
TATGGTAACTGAATTTGATC+AGG 0.411930 6_3:-7931934 None:intergenic
GGTAGGGTTGCTAACAGAAT+TGG 0.416927 6_3:+7931402 Msa0936960:CDS
TACAAATTAATTGCTAATGA+AGG 0.427010 6_3:+7931456 Msa0936960:CDS
GCACTATAAAATTGCAATCC+AGG 0.428333 6_3:-7933283 None:intergenic
GGAATAAGGTTATTGTCAAA+AGG 0.433564 6_3:-7933046 None:intergenic
TGGTTTCTATATTGATCACT+AGG 0.438928 6_3:-7927817 None:intergenic
TGTAGCTTACAGTTACTTTG+AGG 0.447610 6_3:-7932865 None:intergenic
TGACTTACAGTATATGCTTC+GGG 0.448080 6_3:-7928325 None:intergenic
GTGAAGAATGATAAGGGAAA+AGG 0.455139 6_3:+7933313 Msa0936960:CDS
CAGTGATGTTCTTTGGAAAG+TGG 0.458791 6_3:+7931883 Msa0936960:CDS
AAGCTTAGTACTAATGCTCC+TGG 0.469025 6_3:+7933265 Msa0936960:CDS
ATGACTTACAGTATATGCTT+CGG 0.470863 6_3:-7928326 None:intergenic
CTTTGGAGCAACCGTTGGTA+GGG 0.471024 6_3:+7931386 Msa0936960:CDS
ACATAGTAGCACAAATATCT+TGG 0.474127 6_3:-7927958 None:intergenic
TGCCACTGTTGTGGTTTCCT+AGG 0.477157 6_3:-7932979 None:intergenic
AAGAGAAGTTTCAACTTCGA+GGG 0.479964 6_3:-7927873 None:intergenic
TACTTTGAAGGTCACTAACT+GGG 0.480765 6_3:+7928079 Msa0936960:CDS
AAAGAGAAGTTTCAACTTCG+AGG 0.483276 6_3:-7927874 None:intergenic
TTGTATTTACCATTCTTGTC+AGG 0.487865 6_3:-7928128 None:intergenic
AAATTGTTTGAGCTCAAGAA+AGG 0.494592 6_3:+7928050 Msa0936960:CDS
GGAAAATTAGAGAACAAAGA+AGG 0.503162 6_3:+7933193 Msa0936960:CDS
TTAACTAAGTTTACTGGTGT+AGG 0.515178 6_3:-7932941 None:intergenic
CAATGGCTCAATCCATAAGA+AGG 0.524105 6_3:+7928010 Msa0936960:CDS
AAGAATGATAAGGGAAAAGG+AGG 0.537569 6_3:+7933316 Msa0936960:CDS
ACTTTGGAGCAACCGTTGGT+AGG 0.537610 6_3:+7931385 Msa0936960:CDS
GGTTTCTATATTGATCACTA+GGG 0.547408 6_3:-7927816 None:intergenic
TTCCTAGGTTCCAATAGGCA+TGG 0.549117 6_3:-7932964 None:intergenic
ATGGTAACTGAATTTGATCA+GGG 0.552134 6_3:-7931933 None:intergenic
GTGGAAAAGTATGTAAGAGA+AGG 0.556236 6_3:+7931902 Msa0936960:CDS
AGGGTTGCTAACAGAATTGG+AGG 0.557121 6_3:+7931405 Msa0936960:CDS
ACAGTTACTTTGAGGTCACC+AGG 0.559345 6_3:-7932857 None:intergenic
AGAACATCACTGAATCCTCT+AGG 0.566952 6_3:-7931872 None:intergenic
CTAAAATGTTGCCACTGTTG+TGG 0.568105 6_3:-7932988 None:intergenic
ATATTGATCACTAGGGAATG+TGG 0.568648 6_3:-7927809 None:intergenic
AACCATGCCTATTGGAACCT+AGG 0.568665 6_3:+7932962 Msa0936960:CDS
TTAGTCCTACCTGACAAGAA+TGG 0.570956 6_3:+7928119 Msa0936960:CDS
ATTTACCATTCTTGTCAGGT+AGG 0.582202 6_3:-7928124 None:intergenic
TCATACTTTGGAGCAACCGT+TGG 0.584842 6_3:+7931381 Msa0936960:CDS
AAAGGTTGCAGCTATAGTGA+TGG 0.595506 6_3:+7933219 Msa0936960:CDS
AGAGAAGTTTCAACTTCGAG+GGG 0.602670 6_3:-7927872 None:intergenic
TAGTGATGGATAAGAAATCA+GGG 0.603466 6_3:+7933233 Msa0936960:CDS
AAAAGCATGTGGAACTTCGG+TGG 0.606360 6_3:-7933473 None:intergenic
TCTGTTAGCAACCCTACCAA+CGG 0.641516 6_3:-7931397 None:intergenic
ACTTTGAAGGTCACTAACTG+GGG 0.657814 6_3:+7928080 Msa0936960:CDS
AAAGCACTATAGATAGTACA+AGG 0.660537 6_3:-7933569 None:intergenic
TCCAAACAAAGTGCTGAACG+TGG 0.666017 6_3:-7933352 None:intergenic
AAAAGAAAGGAAAGTCAATG+TGG 0.671123 6_3:-7927847 None:intergenic
CTTTACTTAGGTGGACCTAG+AGG 0.691401 6_3:+7931857 Msa0936960:intron
TGGTAACTGAATTTGATCAG+GGG 0.692121 6_3:-7931932 None:intergenic
AGAATGATAAGGGAAAAGGA+GGG 0.703237 6_3:+7933317 Msa0936960:CDS
AACCTAGGAAACCACAACAG+TGG 0.725872 6_3:+7932977 Msa0936960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTAGTTAACATTAATT+GGG - chr6_3:7928924-7928943 None:intergenic 10.0%
!!! TTATTTTAGTTAACATTAAT+TGG - chr6_3:7928925-7928944 None:intergenic 10.0%
!! ATATATTTGCATATTAAAAA+TGG + chr6_3:7929174-7929193 Msa0936960:intron 10.0%
!! AAAAAAAAAAAAAAAACAAC+TGG - chr6_3:7930773-7930792 None:intergenic 10.0%
!! ATTATAATCATAGTAAAATT+TGG - chr6_3:7931620-7931639 None:intergenic 10.0%
!! TGAATTATTATTAATATTGT+TGG - chr6_3:7931697-7931716 None:intergenic 10.0%
!!! TAATGGATTTTATAAATAGA+AGG - chr6_3:7927906-7927925 None:intergenic 15.0%
!! TAAAATGTAATACATATTTC+AGG - chr6_3:7928366-7928385 None:intergenic 15.0%
!!! AAATTTAGATATTTGTTGTA+GGG - chr6_3:7929619-7929638 None:intergenic 15.0%
!! TTAAGTTACTAAATTATTGA+GGG - chr6_3:7929730-7929749 None:intergenic 15.0%
!! ATTAAGTTACTAAATTATTG+AGG - chr6_3:7929731-7929750 None:intergenic 15.0%
!!! TTAATTTTAAGAAAACAATG+TGG + chr6_3:7929817-7929836 Msa0936960:intron 15.0%
!!! ATTGTTGTTCTTTTTTATAA+TGG - chr6_3:7931058-7931077 None:intergenic 15.0%
!!! ATATCATTGACATTTTTTTA+AGG - chr6_3:7931095-7931114 None:intergenic 15.0%
!!! ATATAAAGCAAAATTTTTTG+TGG - chr6_3:7931730-7931749 None:intergenic 15.0%
!!! CTTAATATTTTACTTTACTT+AGG + chr6_3:7931845-7931864 Msa0936960:intron 15.0%
!! ATCAATAAAGCAACAATTAA+TGG - chr6_3:7928195-7928214 None:intergenic 20.0%
!! TAACATTAATTGGGAAATAT+CGG - chr6_3:7928915-7928934 None:intergenic 20.0%
!!! TGGATATAGTACTTTTTTTT+TGG + chr6_3:7928976-7928995 Msa0936960:intron 20.0%
!! TTAAAAATCAAGATACGATA+CGG - chr6_3:7929252-7929271 None:intergenic 20.0%
!!! CAAATTTAGATATTTGTTGT+AGG - chr6_3:7929620-7929639 None:intergenic 20.0%
!! CTACAACAAATATCTAAATT+TGG + chr6_3:7929618-7929637 Msa0936960:intron 20.0%
!!! AACGAATAAACCTTTTTTTA+GGG - chr6_3:7929648-7929667 None:intergenic 20.0%
!!! AAACGAATAAACCTTTTTTT+AGG - chr6_3:7929649-7929668 None:intergenic 20.0%
!!! TCGTAAATAATGTTTTTTAG+AGG + chr6_3:7929700-7929719 Msa0936960:intron 20.0%
!!! CGTAAATAATGTTTTTTAGA+GGG + chr6_3:7929701-7929720 Msa0936960:intron 20.0%
!!! GTAAATAATGTTTTTTAGAG+GGG + chr6_3:7929702-7929721 Msa0936960:intron 20.0%
!!! CTATTTTTGATTTTGATATG+CGG + chr6_3:7930966-7930985 Msa0936960:intron 20.0%
!!! TTTTGTTTGTTTTAGTAAAG+TGG + chr6_3:7931318-7931337 Msa0936960:intron 20.0%
!!! CATTAGCAATTAATTTGTAA+TGG - chr6_3:7931455-7931474 None:intergenic 20.0%
!! TACAAATTAATTGCTAATGA+AGG + chr6_3:7931456-7931475 Msa0936960:CDS 20.0%
!! TTTACTATGATTATAATGTG+TGG + chr6_3:7931623-7931642 Msa0936960:intron 20.0%
!!! AATATTTTACTTTACTTAGG+TGG + chr6_3:7931848-7931867 Msa0936960:intron 20.0%
!! ATCCAAACATATTTATAAAG+AGG - chr6_3:7932363-7932382 None:intergenic 20.0%
!! CTTTATAAATATGTTTGGAT+TGG + chr6_3:7932363-7932382 Msa0936960:intron 20.0%
!! TATGAAATGATACATAGAAA+GGG - chr6_3:7932547-7932566 None:intergenic 20.0%
!! ATATGAAATGATACATAGAA+AGG - chr6_3:7932548-7932567 None:intergenic 20.0%
!!! AACTTTTAGATAATGATGAA+AGG - chr6_3:7932654-7932673 None:intergenic 20.0%
!! ATATAAACTACCCTTATATA+AGG + chr6_3:7932681-7932700 Msa0936960:intron 20.0%
!! ATAGTATTTATTTGCATTAC+AGG + chr6_3:7932830-7932849 Msa0936960:intron 20.0%
!! AATCAATTACCAAAAACTAA+TGG + chr6_3:7933142-7933161 Msa0936960:CDS 20.0%
!! GTTAATTATGTGCTTAATAA+AGG + chr6_3:7933172-7933191 Msa0936960:CDS 20.0%
!!! AAATTTTGTGAAGAATGATA+AGG + chr6_3:7933306-7933325 Msa0936960:CDS 20.0%
!!! AATTTTGTGAAGAATGATAA+GGG + chr6_3:7933307-7933326 Msa0936960:CDS 20.0%
! AAATTATGAGTGGTTCTTAA+TGG - chr6_3:7927923-7927942 None:intergenic 25.0%
!! ATTTTCCTACAAATTATGAG+TGG - chr6_3:7927933-7927952 None:intergenic 25.0%
! AATAAAGCAACAATTAATGG+AGG - chr6_3:7928192-7928211 None:intergenic 25.0%
!!! TGCTTCTATTAATTTGTTTC+AGG + chr6_3:7928268-7928287 Msa0936960:intron 25.0%
!!! TAATTTGTTTCAGGAAAGTT+AGG + chr6_3:7928277-7928296 Msa0936960:intron 25.0%
! AGTGCTATACTATATCAAAA+AGG - chr6_3:7929030-7929049 None:intergenic 25.0%
! AAAACAATGGAAAGAGAAAA+AGG - chr6_3:7929489-7929508 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr6_3:7929502-7929521 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG - chr6_3:7929515-7929534 None:intergenic 25.0%
! TCATCAAAATTGTCATCAAA+TGG + chr6_3:7929540-7929559 Msa0936960:intron 25.0%
! ATGGATGTCAAAATATCAAA+TGG + chr6_3:7929559-7929578 Msa0936960:intron 25.0%
!! AATTTGAGATGATAAGTTGT+AGG + chr6_3:7929748-7929767 Msa0936960:intron 25.0%
! TGTCTTTGATACTACATTTA+TGG - chr6_3:7929776-7929795 None:intergenic 25.0%
!!! TACAGTTTTTTAAGGATTGT+AGG - chr6_3:7929939-7929958 None:intergenic 25.0%
! TGCAACATTATATAATCAGA+GGG - chr6_3:7929992-7930011 None:intergenic 25.0%
! TTAAGAAAATGGAAAAGTGA+AGG - chr6_3:7930150-7930169 None:intergenic 25.0%
! TGGAAAACGTATTAAGAAAA+TGG - chr6_3:7930161-7930180 None:intergenic 25.0%
!!! TTTTTTTGTATATGCTCTTG+AGG + chr6_3:7930793-7930812 Msa0936960:intron 25.0%
!!! AAGATTTGTTGAATAAGTGT+TGG - chr6_3:7931136-7931155 None:intergenic 25.0%
! CAATATGTATTTAGAAACAG+AGG - chr6_3:7931524-7931543 None:intergenic 25.0%
! ATTAACATGAATGAAATGAC+TGG - chr6_3:7931550-7931569 None:intergenic 25.0%
! TGTGGTACACAAATAATAAT+TGG + chr6_3:7931641-7931660 Msa0936960:intron 25.0%
!!! TTGTTTCTAATAGACATTGA+AGG - chr6_3:7932018-7932037 None:intergenic 25.0%
! CAACAATACTACGATATAAT+TGG + chr6_3:7932107-7932126 Msa0936960:intron 25.0%
! TACACCAGTATTATGAAAAT+TGG - chr6_3:7932195-7932214 None:intergenic 25.0%
!! TTTCTTCCTTTTGTATAGAA+TGG + chr6_3:7932233-7932252 Msa0936960:intron 25.0%
!! TTCTTCCTTTTGTATAGAAT+GGG + chr6_3:7932234-7932253 Msa0936960:intron 25.0%
! CACCTCTTTATAAATATGTT+TGG + chr6_3:7932358-7932377 Msa0936960:intron 25.0%
!! TATAAATATGTTTGGATTGG+TGG + chr6_3:7932366-7932385 Msa0936960:intron 25.0%
! TGGGATCTTAAAAAAAATCA+TGG - chr6_3:7932417-7932436 None:intergenic 25.0%
!!! TTTTAGGAAAAGTTACGTTT+GGG - chr6_3:7932436-7932455 None:intergenic 25.0%
!!! ATTTTAGGAAAAGTTACGTT+TGG - chr6_3:7932437-7932456 None:intergenic 25.0%
! TTCATATTAGAGATAGTAGT+TGG + chr6_3:7932561-7932580 Msa0936960:intron 25.0%
! GATGTGATTACCTAATATAA+GGG + chr6_3:7932626-7932645 Msa0936960:intron 25.0%
! GATGTAATCACCTTATATAA+GGG - chr6_3:7932694-7932713 None:intergenic 25.0%
! AGATGTAATCACCTTATATA+AGG - chr6_3:7932695-7932714 None:intergenic 25.0%
!! GATGAAGTTGTTCAAATTTT+TGG + chr6_3:7933010-7933029 Msa0936960:CDS 25.0%
!! TTTGACTGATGAAATTTTTC+CGG - chr6_3:7933074-7933093 None:intergenic 25.0%
!!! ACGTTATAACCATTAGTTTT+TGG - chr6_3:7933154-7933173 None:intergenic 25.0%
! ACAATAGTTGAAGGAAAATT+AGG - chr6_3:7933409-7933428 None:intergenic 25.0%
!! TCTTTTGTAACAATAGTTGA+AGG - chr6_3:7933418-7933437 None:intergenic 25.0%
! AACAACATAACATGCTTATA+AGG - chr6_3:7933445-7933464 None:intergenic 25.0%
!! TATAGTGCTTTTAGTATGTT+TGG + chr6_3:7933581-7933600 Msa0936960:three_prime_UTR 25.0%
GGTTTCTATATTGATCACTA+GGG - chr6_3:7927819-7927838 None:intergenic 30.0%
TGGTTTCTATATTGATCACT+AGG - chr6_3:7927820-7927839 None:intergenic 30.0%
AAAAGAAAGGAAAGTCAATG+TGG - chr6_3:7927850-7927869 None:intergenic 30.0%
! AAGAACCACTCATAATTTGT+AGG + chr6_3:7927925-7927944 Msa0936960:five_prime_UTR 30.0%
ACATAGTAGCACAAATATCT+TGG - chr6_3:7927961-7927980 None:intergenic 30.0%
AAATTGTTTGAGCTCAAGAA+AGG + chr6_3:7928050-7928069 Msa0936960:CDS 30.0%
TTGTATTTACCATTCTTGTC+AGG - chr6_3:7928131-7928150 None:intergenic 30.0%
ATCAAACTAGAATGTTCAAC+TGG + chr6_3:7928235-7928254 Msa0936960:intron 30.0%
AAGTTAGGTGATATTGTTCT+TGG + chr6_3:7928292-7928311 Msa0936960:CDS 30.0%
ATGACTTACAGTATATGCTT+CGG - chr6_3:7928329-7928348 None:intergenic 30.0%
CAAAGAATTGAAGAAAGACT+TGG - chr6_3:7928440-7928459 None:intergenic 30.0%
TTCATAGAAGAAAAGATGTG+TGG - chr6_3:7928471-7928490 None:intergenic 30.0%
! ACACATCTTTTCTTCTATGA+AGG + chr6_3:7928470-7928489 Msa0936960:intron 30.0%
! TTGATATAGTATAGCACTGA+TGG + chr6_3:7929032-7929051 Msa0936960:intron 30.0%
ACCACAAAATATCCAACTTT+GGG + chr6_3:7929344-7929363 Msa0936960:intron 30.0%
!!! AACCACTTTTTGACAACTTT+TGG + chr6_3:7929417-7929436 Msa0936960:intron 30.0%
!! ATTTGGTGTTCCCTAAAAAA+AGG + chr6_3:7929635-7929654 Msa0936960:intron 30.0%
TAGGATTTCAACTAGAATCA+TGG + chr6_3:7929854-7929873 Msa0936960:intron 30.0%
AGGATTTCAACTAGAATCAT+GGG + chr6_3:7929855-7929874 Msa0936960:intron 30.0%
!! TGTGAATTTTAATAGACCAG+GGG - chr6_3:7929916-7929935 None:intergenic 30.0%
!! GTGTGAATTTTAATAGACCA+GGG - chr6_3:7929917-7929936 None:intergenic 30.0%
!!! GTTCATGGTACAGTTTTTTA+AGG - chr6_3:7929947-7929966 None:intergenic 30.0%
TTATATAATCAGAGGGTTCA+TGG - chr6_3:7929985-7930004 None:intergenic 30.0%
GTGCAACATTATATAATCAG+AGG - chr6_3:7929993-7930012 None:intergenic 30.0%
AAAATGGAAAAGTGAAGGAA+GGG - chr6_3:7930145-7930164 None:intergenic 30.0%
TTACATGCATAATGTAGACA+TGG - chr6_3:7930181-7930200 None:intergenic 30.0%
! TATGCATGTAAACTTTTGAG+TGG + chr6_3:7930190-7930209 Msa0936960:intron 30.0%
!! TTTGGTACATGATTTTTGGA+TGG + chr6_3:7930411-7930430 Msa0936960:intron 30.0%
ATACAATTCAGTTTATCTCC+TGG + chr6_3:7930619-7930638 Msa0936960:intron 30.0%
!!! TAGTTTTTTAGGAATCACTC+TGG + chr6_3:7930645-7930664 Msa0936960:intron 30.0%
!!! TCTTTTCATTGGTGTTAGTT+GGG + chr6_3:7930932-7930951 Msa0936960:intron 30.0%
!! AATAAGTGTTGGCGATTTAA+AGG - chr6_3:7931125-7931144 None:intergenic 30.0%
! CTTCAATGGCAATTCTAAAA+AGG - chr6_3:7931249-7931268 None:intergenic 30.0%
CAGAATGATTCATCATACTT+TGG + chr6_3:7931369-7931388 Msa0936960:intron 30.0%
TGTATTTAGAAACAGAGGAA+GGG - chr6_3:7931519-7931538 None:intergenic 30.0%
ATGTATTTAGAAACAGAGGA+AGG - chr6_3:7931520-7931539 None:intergenic 30.0%
TAGATCAGTAAATGCATGAT+TGG + chr6_3:7931589-7931608 Msa0936960:intron 30.0%
CATTTCACCATATAGAAACA+TGG + chr6_3:7931820-7931839 Msa0936960:intron 30.0%
! TTAAGAGCCATGTTTCTATA+TGG - chr6_3:7931830-7931849 None:intergenic 30.0%
ATGGTAACTGAATTTGATCA+GGG - chr6_3:7931936-7931955 None:intergenic 30.0%
TATGGTAACTGAATTTGATC+AGG - chr6_3:7931937-7931956 None:intergenic 30.0%
!!! TTCAGTTACCATAGTTTTGA+TGG + chr6_3:7931944-7931963 Msa0936960:CDS 30.0%
! TCTAGTTCAACTAGTTGAAT+CGG + chr6_3:7932159-7932178 Msa0936960:intron 30.0%
AGTATCCCATTCTATACAAA+AGG - chr6_3:7932242-7932261 None:intergenic 30.0%
! CGTAACTTTTCCTAAAATCA+TGG + chr6_3:7932439-7932458 Msa0936960:intron 30.0%
! AACTTTTCCTAAAATCATGG+TGG + chr6_3:7932442-7932461 Msa0936960:intron 30.0%
ATACATAGAAAGGGATGTAA+AGG - chr6_3:7932538-7932557 None:intergenic 30.0%
GGATGTGATTACCTAATATA+AGG + chr6_3:7932625-7932644 Msa0936960:intron 30.0%
!! ATGAAAGGTACCCTTATATT+AGG - chr6_3:7932639-7932658 None:intergenic 30.0%
TGCTTGCATAATTATGGTTA+GGG - chr6_3:7932906-7932925 None:intergenic 30.0%
TTGCTTGCATAATTATGGTT+AGG - chr6_3:7932907-7932926 None:intergenic 30.0%
! AGCTTTTGCTTGCATAATTA+TGG - chr6_3:7932912-7932931 None:intergenic 30.0%
TTAACTAAGTTTACTGGTGT+AGG - chr6_3:7932944-7932963 None:intergenic 30.0%
GGAATAAGGTTATTGTCAAA+AGG - chr6_3:7933049-7933068 None:intergenic 30.0%
! AAATTTTTCCGGTTGGAATA+AGG - chr6_3:7933063-7933082 None:intergenic 30.0%
GGAAAAATTTCATCAGTCAA+AGG + chr6_3:7933073-7933092 Msa0936960:CDS 30.0%
GGAAAATTAGAGAACAAAGA+AGG + chr6_3:7933193-7933212 Msa0936960:CDS 30.0%
AGAGAACAAAGAAGGATTAA+AGG + chr6_3:7933201-7933220 Msa0936960:CDS 30.0%
!! ATAGTGATGGATAAGAAATC+AGG + chr6_3:7933232-7933251 Msa0936960:CDS 30.0%
!! TAGTGATGGATAAGAAATCA+GGG + chr6_3:7933233-7933252 Msa0936960:CDS 30.0%
TTAGGATGATTAACAGAATC+AGG - chr6_3:7933391-7933410 None:intergenic 30.0%
! TAGAATTGTGAAAAAGCATG+TGG - chr6_3:7933487-7933506 None:intergenic 30.0%
! AAAGCACTATAGATAGTACA+AGG - chr6_3:7933572-7933591 None:intergenic 30.0%
ATTAGCACAACTTGACACTA+TGG + chr6_3:7927760-7927779 Msa0936960:five_prime_UTR 35.0%
! ACTTGACACTATGGAGTATT+AGG + chr6_3:7927769-7927788 Msa0936960:five_prime_UTR 35.0%
ATATTGATCACTAGGGAATG+TGG - chr6_3:7927812-7927831 None:intergenic 35.0%
AAGAGAAGTTTCAACTTCGA+GGG - chr6_3:7927876-7927895 None:intergenic 35.0%
AAAGAGAAGTTTCAACTTCG+AGG - chr6_3:7927877-7927896 None:intergenic 35.0%
CATCATTCTTCTCCTTCTTA+TGG - chr6_3:7928025-7928044 None:intergenic 35.0%
GAAAGGTGATCTTACTTTGA+AGG + chr6_3:7928067-7928086 Msa0936960:CDS 35.0%
! TTACTTTGAAGGTCACTAAC+TGG + chr6_3:7928078-7928097 Msa0936960:CDS 35.0%
! TACTTTGAAGGTCACTAACT+GGG + chr6_3:7928079-7928098 Msa0936960:CDS 35.0%
ATTTACCATTCTTGTCAGGT+AGG - chr6_3:7928127-7928146 None:intergenic 35.0%
AAGCAACAATTAATGGAGGA+TGG - chr6_3:7928188-7928207 None:intergenic 35.0%
TGACTTACAGTATATGCTTC+GGG - chr6_3:7928328-7928347 None:intergenic 35.0%
AAGGAGGAGATAAGAAATAG+AGG - chr6_3:7928615-7928634 None:intergenic 35.0%
! CTATTTCTTATCTCCTCCTT+TGG + chr6_3:7928615-7928634 Msa0936960:intron 35.0%
AAGATGACTAGATATCGTCA+CGG - chr6_3:7928647-7928666 None:intergenic 35.0%
!!! TCATCCATTTTGAAGTATCG+TGG - chr6_3:7928724-7928743 None:intergenic 35.0%
GATACTCATCTGATACGTAT+CGG - chr6_3:7928795-7928814 None:intergenic 35.0%
TATCGGTGCAGGATAATTAT+TGG - chr6_3:7928886-7928905 None:intergenic 35.0%
!!! AGTACTGATGTGTTCTGTTT+TGG + chr6_3:7928956-7928975 Msa0936960:intron 35.0%
! ATTTTTCCGTATCAGCGTAT+CGG + chr6_3:7929273-7929292 Msa0936960:intron 35.0%
CACCACAAAATATCCAACTT+TGG + chr6_3:7929343-7929362 Msa0936960:intron 35.0%
CCACAAAATATCCAACTTTG+GGG + chr6_3:7929345-7929364 Msa0936960:intron 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG - chr6_3:7929422-7929441 None:intergenic 35.0%
AAAGAGAAAAAGGAAGAGAG+AGG - chr6_3:7929479-7929498 None:intergenic 35.0%
TAATTTAGTAGCTCAGCTGT+TGG + chr6_3:7929675-7929694 Msa0936960:intron 35.0%
TGTGGCAACTTCTTCTTTAT+AGG + chr6_3:7929835-7929854 Msa0936960:intron 35.0%
ATTTCAACTAGAATCATGGG+CGG + chr6_3:7929858-7929877 Msa0936960:intron 35.0%
!! GTGAATTTTAATAGACCAGG+GGG - chr6_3:7929915-7929934 None:intergenic 35.0%
!! GGTGTGAATTTTAATAGACC+AGG - chr6_3:7929918-7929937 None:intergenic 35.0%
!! TTCATGGTCAGTTTTTAAGG+GGG - chr6_3:7929969-7929988 None:intergenic 35.0%
!! GTTCATGGTCAGTTTTTAAG+GGG - chr6_3:7929970-7929989 None:intergenic 35.0%
! GGTTCATGGTCAGTTTTTAA+GGG - chr6_3:7929971-7929990 None:intergenic 35.0%
AAAAGATACAAGTTCAGTGC+TGG - chr6_3:7930037-7930056 None:intergenic 35.0%
ATATTGTGTGGTTGCAATAG+TGG - chr6_3:7930083-7930102 None:intergenic 35.0%
GAAAATGGAAAAGTGAAGGA+AGG - chr6_3:7930146-7930165 None:intergenic 35.0%
CATCTCAAGAAGTTCATTCT+TGG - chr6_3:7930299-7930318 None:intergenic 35.0%
TGCTTTATGTAATGCAGATG+CGG + chr6_3:7930344-7930363 Msa0936960:intron 35.0%
!! GAGGTTTGGTACATGATTTT+TGG + chr6_3:7930407-7930426 Msa0936960:intron 35.0%
!! TACATGATTTTTGGATGGCT+TGG + chr6_3:7930416-7930435 Msa0936960:intron 35.0%
!! GTCCTTCCTATTGATTTGTT+GGG + chr6_3:7930449-7930468 Msa0936960:intron 35.0%
GAAAGACCCAACAAATCAAT+AGG - chr6_3:7930458-7930477 None:intergenic 35.0%
ATTCCTAAAAAACTAGTGCC+AGG - chr6_3:7930640-7930659 None:intergenic 35.0%
! ACTCATAATGGAAACAAGGA+TGG - chr6_3:7930671-7930690 None:intergenic 35.0%
! ATCCTTGTTTCCATTATGAG+TGG + chr6_3:7930670-7930689 Msa0936960:intron 35.0%
! TCCTTGTTTCCATTATGAGT+GGG + chr6_3:7930671-7930690 Msa0936960:intron 35.0%
!!! CTCTTTTCATTGGTGTTAGT+TGG + chr6_3:7930931-7930950 Msa0936960:intron 35.0%
!! TTGGTTAATGCAGAGTATTG+AGG - chr6_3:7931678-7931697 None:intergenic 35.0%
! GTGGAAAAGTATGTAAGAGA+AGG + chr6_3:7931902-7931921 Msa0936960:CDS 35.0%
TGGTAACTGAATTTGATCAG+GGG - chr6_3:7931935-7931954 None:intergenic 35.0%
CTTCTTCACCATCAAAACTA+TGG - chr6_3:7931955-7931974 None:intergenic 35.0%
!!! CATAGTTTTGATGGTGAAGA+AGG + chr6_3:7931953-7931972 Msa0936960:CDS 35.0%
ATTGGAATCAAACCAACTGA+AGG + chr6_3:7932125-7932144 Msa0936960:intron 35.0%
TTATGAAAATTGGTCCGAAC+TGG - chr6_3:7932185-7932204 None:intergenic 35.0%
! CGGACCAATTTTCATAATAC+TGG + chr6_3:7932188-7932207 Msa0936960:intron 35.0%
!! GGGATACTTCTAAAACAAAG+TGG + chr6_3:7932254-7932273 Msa0936960:intron 35.0%
! CAACTAACCACCATGATTTT+AGG - chr6_3:7932452-7932471 None:intergenic 35.0%
TCACTACATGTTTGATGTGA+CGG - chr6_3:7932492-7932511 None:intergenic 35.0%
CACATCCTAAATAGACATCA+AGG - chr6_3:7932612-7932631 None:intergenic 35.0%
ATTTGCATTACAGGATTTCC+TGG + chr6_3:7932839-7932858 Msa0936960:intron 35.0%
! TGTAGCTTACAGTTACTTTG+AGG - chr6_3:7932868-7932887 None:intergenic 35.0%
GTAACTGTAAGCTACATTCT+AGG + chr6_3:7932872-7932891 Msa0936960:CDS 35.0%
GCATGGTTAACTAAGTTTAC+TGG - chr6_3:7932950-7932969 None:intergenic 35.0%
ACTTAGTTAACCATGCCTAT+TGG + chr6_3:7932954-7932973 Msa0936960:CDS 35.0%
GACAATAACCTTATTCCAAC+CGG + chr6_3:7933052-7933071 Msa0936960:CDS 35.0%
! ACTGATGAAATTTTTCCGGT+TGG - chr6_3:7933070-7933089 None:intergenic 35.0%
! TGTGGCTTTACGAAATCATT+TGG - chr6_3:7933103-7933122 None:intergenic 35.0%
TTCGTAAAGCCACAAATTGT+TGG + chr6_3:7933109-7933128 Msa0936960:CDS 35.0%
ATTCTTGCACCAACAATTTG+TGG - chr6_3:7933121-7933140 None:intergenic 35.0%
GCACTATAAAATTGCAATCC+AGG - chr6_3:7933286-7933305 None:intergenic 35.0%
GTGAAGAATGATAAGGGAAA+AGG + chr6_3:7933313-7933332 Msa0936960:CDS 35.0%
AAGAATGATAAGGGAAAAGG+AGG + chr6_3:7933316-7933335 Msa0936960:CDS 35.0%
AGAATGATAAGGGAAAAGGA+GGG + chr6_3:7933317-7933336 Msa0936960:CDS 35.0%
! TGAAAAAGCATGTGGAACTT+CGG - chr6_3:7933479-7933498 None:intergenic 35.0%
AAAGTCAATGTGGCTGCTTA+TGG - chr6_3:7927840-7927859 None:intergenic 40.0%
ACTTCGAGGGGAAAAAAGAA+AGG - chr6_3:7927863-7927882 None:intergenic 40.0%
AGAGAAGTTTCAACTTCGAG+GGG - chr6_3:7927875-7927894 None:intergenic 40.0%
! CTTCTCTTCTTAGCTGTTTC+TGG + chr6_3:7927981-7928000 Msa0936960:CDS 40.0%
!! GCTGTTTCTGGATTTGTCAA+TGG + chr6_3:7927993-7928012 Msa0936960:CDS 40.0%
CAATGGCTCAATCCATAAGA+AGG + chr6_3:7928010-7928029 Msa0936960:CDS 40.0%
! ACTTTGAAGGTCACTAACTG+GGG + chr6_3:7928080-7928099 Msa0936960:CDS 40.0%
TTAGTCCTACCTGACAAGAA+TGG + chr6_3:7928119-7928138 Msa0936960:CDS 40.0%
GAAGCCACGATACTTCAAAA+TGG + chr6_3:7928717-7928736 Msa0936960:intron 40.0%
!! GATACGTATCGGAAAGTATC+AGG - chr6_3:7928784-7928803 None:intergenic 40.0%
! TGATACGTATCGGGAAGTAT+CGG - chr6_3:7928854-7928873 None:intergenic 40.0%
ATACTCTCCTGATACGTATC+GGG - chr6_3:7928863-7928882 None:intergenic 40.0%
GATACTCTCCTGATACGTAT+CGG - chr6_3:7928864-7928883 None:intergenic 40.0%
TAATTGGGAAATATCGGAGC+AGG - chr6_3:7928909-7928928 None:intergenic 40.0%
AATCAAGATACGATACGGCT+GGG - chr6_3:7929247-7929266 None:intergenic 40.0%
AAATCAAGATACGATACGGC+TGG - chr6_3:7929248-7929267 None:intergenic 40.0%
! CCCCAAAGTTGGATATTTTG+TGG - chr6_3:7929348-7929367 None:intergenic 40.0%
TAAAATGTGCACCCCAAAGT+TGG - chr6_3:7929359-7929378 None:intergenic 40.0%
!! TCAGTTTTTAAGGGGGTTCA+TGG - chr6_3:7929962-7929981 None:intergenic 40.0%
! GGGTTCATGGTCAGTTTTTA+AGG - chr6_3:7929972-7929991 None:intergenic 40.0%
ATAGCACTGCACATATTGTG+TGG - chr6_3:7930095-7930114 None:intergenic 40.0%
AAGGGTCAGAATGTGGTTAT+AGG - chr6_3:7930127-7930146 None:intergenic 40.0%
! AGTCACCTTTTTGTTACCTG+TGG + chr6_3:7930375-7930394 Msa0936960:intron 40.0%
! GTCACCTTTTTGTTACCTGT+GGG + chr6_3:7930376-7930395 Msa0936960:intron 40.0%
! TCACCTTTTTGTTACCTGTG+GGG + chr6_3:7930377-7930396 Msa0936960:intron 40.0%
AAACCCCACAGGTAACAAAA+AGG - chr6_3:7930383-7930402 None:intergenic 40.0%
!!! TGATTTTTGGATGGCTTGGT+TGG + chr6_3:7930420-7930439 Msa0936960:intron 40.0%
!!! GATTTTTGGATGGCTTGGTT+GGG + chr6_3:7930421-7930440 Msa0936960:intron 40.0%
!! GGTCCTTCCTATTGATTTGT+TGG + chr6_3:7930448-7930467 Msa0936960:intron 40.0%
GACCCAACAAATCAATAGGA+AGG - chr6_3:7930454-7930473 None:intergenic 40.0%
!! TGATTTGTTGGGTCTTTCTG+AGG + chr6_3:7930460-7930479 Msa0936960:intron 40.0%
!! GATTTGTTGGGTCTTTCTGA+GGG + chr6_3:7930461-7930480 Msa0936960:intron 40.0%
! ATTTGTTGGGTCTTTCTGAG+GGG + chr6_3:7930462-7930481 Msa0936960:intron 40.0%
!! GTTTCCTAGCAGAGAGTATT+AGG + chr6_3:7930493-7930512 Msa0936960:intron 40.0%
TACACCTAATACTCTCTGCT+AGG - chr6_3:7930500-7930519 None:intergenic 40.0%
!!! TCTCCTGGCACTAGTTTTTT+AGG + chr6_3:7930634-7930653 Msa0936960:intron 40.0%
! ACCCACTCATAATGGAAACA+AGG - chr6_3:7930675-7930694 None:intergenic 40.0%
TTGTTTCCATTATGAGTGGG+TGG + chr6_3:7930674-7930693 Msa0936960:intron 40.0%
GTATATGCTCTTGAGGTAGT+AGG + chr6_3:7930800-7930819 Msa0936960:intron 40.0%
TTTCTATCCCGTCTTTGGAT+GGG + chr6_3:7930900-7930919 Msa0936960:intron 40.0%
!! GGGGTGTTTTCTCTTTTCAT+TGG + chr6_3:7930921-7930940 Msa0936960:intron 40.0%
TGAGAGTAAGCAAGCTTCAA+TGG - chr6_3:7931263-7931282 None:intergenic 40.0%
GGAGCTCAGTTTACTCTAAA+TGG + chr6_3:7931426-7931445 Msa0936960:CDS 40.0%
GAAGGAAACAACACTCTTCA+TGG + chr6_3:7931474-7931493 Msa0936960:CDS 40.0%
AGAACATCACTGAATCCTCT+AGG - chr6_3:7931875-7931894 None:intergenic 40.0%
GAGGATTCAGTGATGTTCTT+TGG + chr6_3:7931876-7931895 Msa0936960:CDS 40.0%
! CAGTGATGTTCTTTGGAAAG+TGG + chr6_3:7931883-7931902 Msa0936960:CDS 40.0%
AATCAAACCAACTGAAGGAG+TGG + chr6_3:7932130-7932149 Msa0936960:intron 40.0%
!! ATATGTTTGGATTGGTGGCT+AGG + chr6_3:7932371-7932390 Msa0936960:intron 40.0%
GGTACATTGTTCGAGTAACA+TGG + chr6_3:7932582-7932601 Msa0936960:intron 40.0%
GCTGTCCTTGATGTCTATTT+AGG + chr6_3:7932604-7932623 Msa0936960:intron 40.0%
CTAAAATGTTGCCACTGTTG+TGG - chr6_3:7932991-7933010 None:intergenic 40.0%
AAAGGTTGCAGCTATAGTGA+TGG + chr6_3:7933219-7933238 Msa0936960:CDS 40.0%
AAGCTTAGTACTAATGCTCC+TGG + chr6_3:7933265-7933284 Msa0936960:CDS 40.0%
ATCGTCACGGATCATTCCAA+AGG - chr6_3:7928634-7928653 None:intergenic 45.0%
!! GGAAAGTATCAGGCAGGTAT+CGG - chr6_3:7928774-7928793 None:intergenic 45.0%
GATACTTCCCGATACGTATC+AGG + chr6_3:7928853-7928872 Msa0936960:intron 45.0%
GGAAATATCGGAGCAGGTAT+CGG - chr6_3:7928903-7928922 None:intergenic 45.0%
!!! AGCACTGATGGTGCTCTTTT+TGG + chr6_3:7929044-7929063 Msa0936960:intron 45.0%
!! GCACTGATGGTGCTCTTTTT+GGG + chr6_3:7929045-7929064 Msa0936960:intron 45.0%
ATGTGCTACGAGCTTATGAC+TGG + chr6_3:7929135-7929154 Msa0936960:intron 45.0%
TGTGGTGCATATGTGAAGCT+CGG - chr6_3:7929330-7929349 None:intergenic 45.0%
! TGTGTTGATCTGACTCTCTG+TGG + chr6_3:7930524-7930543 Msa0936960:intron 45.0%
GACGCTGGATGTAGAACAAT+TGG + chr6_3:7930593-7930612 Msa0936960:intron 45.0%
TTTCCATTATGAGTGGGTGG+TGG + chr6_3:7930677-7930696 Msa0936960:intron 45.0%
TATTGGTCCCAGCAGATTGA+TGG - chr6_3:7930705-7930724 None:intergenic 45.0%
CTGGGACCAATAGATTACGA+GGG + chr6_3:7930713-7930732 Msa0936960:intron 45.0%
ACTCCTCCCTCGTAATCTAT+TGG - chr6_3:7930722-7930741 None:intergenic 45.0%
CAACTGGAATCCATGCTCAA+AGG - chr6_3:7930757-7930776 None:intergenic 45.0%
TTATTTCATCTCCCGAGAGG+TGG + chr6_3:7930824-7930843 Msa0936960:intron 45.0%
TATTTCATCTCCCGAGAGGT+GGG + chr6_3:7930825-7930844 Msa0936960:intron 45.0%
AAAAACAAAGCCCACCTCTC+GGG - chr6_3:7930838-7930857 None:intergenic 45.0%
CAAAAACAAAGCCCACCTCT+CGG - chr6_3:7930839-7930858 None:intergenic 45.0%
!!! GAGAGGTGGGCTTTGTTTTT+GGG + chr6_3:7930838-7930857 Msa0936960:intron 45.0%
GTTTCTATCCCGTCTTTGGA+TGG + chr6_3:7930899-7930918 Msa0936960:intron 45.0%
TTCTATCCCGTCTTTGGATG+GGG + chr6_3:7930901-7930920 Msa0936960:intron 45.0%
AAAACACCCCCATCCAAAGA+CGG - chr6_3:7930911-7930930 None:intergenic 45.0%
GAGTCGTGTGATAGATGTGA+TGG - chr6_3:7931166-7931185 None:intergenic 45.0%
!! TCATACTTTGGAGCAACCGT+TGG + chr6_3:7931381-7931400 Msa0936960:CDS 45.0%
TCTGTTAGCAACCCTACCAA+CGG - chr6_3:7931400-7931419 None:intergenic 45.0%
GGTAGGGTTGCTAACAGAAT+TGG + chr6_3:7931402-7931421 Msa0936960:CDS 45.0%
AGGGTTGCTAACAGAATTGG+AGG + chr6_3:7931405-7931424 Msa0936960:CDS 45.0%
CTTTACTTAGGTGGACCTAG+AGG + chr6_3:7931857-7931876 Msa0936960:intron 45.0%
AAAGAGACCACTCCTTCAGT+TGG - chr6_3:7932140-7932159 None:intergenic 45.0%
ACTAGTTGAATCGGCCAGTT+CGG + chr6_3:7932168-7932187 Msa0936960:intron 45.0%
!! ACAGTTACTTTGAGGTCACC+AGG - chr6_3:7932860-7932879 None:intergenic 45.0%
AACCATGCCTATTGGAACCT+AGG + chr6_3:7932962-7932981 Msa0936960:CDS 45.0%
TTCCTAGGTTCCAATAGGCA+TGG - chr6_3:7932967-7932986 None:intergenic 45.0%
GTGGTTTCCTAGGTTCCAAT+AGG - chr6_3:7932972-7932991 None:intergenic 45.0%
AACCTAGGAAACCACAACAG+TGG + chr6_3:7932977-7932996 Msa0936960:CDS 45.0%
ACCACGTTCAGCACTTTGTT+TGG + chr6_3:7933351-7933370 Msa0936960:CDS 45.0%
!! TCCAAACAAAGTGCTGAACG+TGG - chr6_3:7933355-7933374 None:intergenic 45.0%
! AAAAGCATGTGGAACTTCGG+TGG - chr6_3:7933476-7933495 None:intergenic 45.0%
!! AAAAAATAAAATTTAATCTT+CGG - chr6_3:7928817-7928836 None:intergenic 5.0%
GTCACGGATCATTCCAAAGG+AGG - chr6_3:7928631-7928650 None:intergenic 50.0%
TATCGGTGCAGAATACGCAG+AGG - chr6_3:7928757-7928776 None:intergenic 50.0%
!! CGTATCGGAAAGTATCAGGC+AGG - chr6_3:7928780-7928799 None:intergenic 50.0%
TAGGGTCATGCTAACGTGCT+TGG - chr6_3:7929601-7929620 None:intergenic 50.0%
GCGGAGCTACATATGTGTGA+GGG + chr6_3:7929877-7929896 Msa0936960:intron 50.0%
CGGAGCTACATATGTGTGAG+GGG + chr6_3:7929878-7929897 Msa0936960:intron 50.0%
GGAGCTACATATGTGTGAGG+GGG + chr6_3:7929879-7929898 Msa0936960:intron 50.0%
!! CAGTGCTGGCAGTGTTTGAT+TGG - chr6_3:7930023-7930042 None:intergenic 50.0%
GTGAAGGAAGGGTCAGAATG+TGG - chr6_3:7930134-7930153 None:intergenic 50.0%
TGATCTGACTCTCTGTGGTG+TGG + chr6_3:7930529-7930548 Msa0936960:intron 50.0%
TCTCTGTGGTGTGGTCTATC+TGG + chr6_3:7930538-7930557 Msa0936960:intron 50.0%
CTGGTCTGCTCGTAATGATC+TGG + chr6_3:7930557-7930576 Msa0936960:intron 50.0%
GTTCCACCACCCACTCATAA+TGG - chr6_3:7930683-7930702 None:intergenic 50.0%
TGGTGGAACCATCAATCTGC+TGG + chr6_3:7930694-7930713 Msa0936960:intron 50.0%
GGTGGAACCATCAATCTGCT+GGG + chr6_3:7930695-7930714 Msa0936960:intron 50.0%
GCTGGGACCAATAGATTACG+AGG + chr6_3:7930712-7930731 Msa0936960:intron 50.0%
GGACCAATAGATTACGAGGG+AGG + chr6_3:7930716-7930735 Msa0936960:intron 50.0%
! TACGAGGGAGGAGTTTTGCT+TGG + chr6_3:7930728-7930747 Msa0936960:intron 50.0%
! ACGAGGGAGGAGTTTTGCTT+GGG + chr6_3:7930729-7930748 Msa0936960:intron 50.0%
GGCTTATTTCATCTCCCGAG+AGG + chr6_3:7930821-7930840 Msa0936960:intron 50.0%
!!! CGAGAGGTGGGCTTTGTTTT+TGG + chr6_3:7930837-7930856 Msa0936960:intron 50.0%
!!! AGGTGGGCTTTGTTTTTGGG+TGG + chr6_3:7930841-7930860 Msa0936960:intron 50.0%
!!! TGGGCTTTGTTTTTGGGTGG+AGG + chr6_3:7930844-7930863 Msa0936960:intron 50.0%
!!! GGGCTTTGTTTTTGGGTGGA+GGG + chr6_3:7930845-7930864 Msa0936960:intron 50.0%
! GTCCCTTGCTTGCCTTTTAG+CGG + chr6_3:7930867-7930886 Msa0936960:intron 50.0%
! TCCCTTGCTTGCCTTTTAGC+GGG + chr6_3:7930868-7930887 Msa0936960:intron 50.0%
ACCCGCTAAAAGGCAAGCAA+GGG - chr6_3:7930872-7930891 None:intergenic 50.0%
! GGGTGTTTCTATCCCGTCTT+TGG + chr6_3:7930895-7930914 Msa0936960:intron 50.0%
TCTATCCCGTCTTTGGATGG+GGG + chr6_3:7930902-7930921 Msa0936960:intron 50.0%
AAACACCCCCATCCAAAGAC+GGG - chr6_3:7930910-7930929 None:intergenic 50.0%
!! ACTTTGGAGCAACCGTTGGT+AGG + chr6_3:7931385-7931404 Msa0936960:CDS 50.0%
!! CTTTGGAGCAACCGTTGGTA+GGG + chr6_3:7931386-7931405 Msa0936960:CDS 50.0%
TGCCACTGTTGTGGTTTCCT+AGG - chr6_3:7932982-7933001 None:intergenic 50.0%
! ACTGCGCCGATACGCTGATA+CGG - chr6_3:7929282-7929301 None:intergenic 55.0%
GGCGGAGCTACATATGTGTG+AGG + chr6_3:7929876-7929895 Msa0936960:intron 55.0%
TTACCTGTGGGGTTTCGTCG+AGG + chr6_3:7930388-7930407 Msa0936960:intron 55.0%
AAACCTCGACGAAACCCCAC+AGG - chr6_3:7930394-7930413 None:intergenic 55.0%
TGTGGGGTTTCGTCGAGGTT+TGG + chr6_3:7930393-7930412 Msa0936960:intron 55.0%
!! TGGATGGCTTGGTTGGGAGT+TGG + chr6_3:7930427-7930446 Msa0936960:intron 55.0%
GGTGTTCTCTGCTATGACGC+TGG + chr6_3:7930578-7930597 Msa0936960:intron 55.0%
TGCTTGGGTGCCTTTGAGCA+TGG + chr6_3:7930744-7930763 Msa0936960:intron 55.0%
CACCCGCTAAAAGGCAAGCA+AGG - chr6_3:7930873-7930892 None:intergenic 55.0%
!! TGCTTGCCTTTTAGCGGGTG+TGG + chr6_3:7930873-7930892 Msa0936960:intron 55.0%
!! GCTTGCCTTTTAGCGGGTGT+GGG + chr6_3:7930874-7930893 Msa0936960:intron 55.0%
!! CTTGCCTTTTAGCGGGTGTG+GGG + chr6_3:7930875-7930894 Msa0936960:intron 55.0%
AACACCCCACACCCGCTAAA+AGG - chr6_3:7930882-7930901 None:intergenic 55.0%
!! ATCGGAGCAGGTATCGGTGC+AGG - chr6_3:7928897-7928916 None:intergenic 60.0%
AAGTCTGAACCCCCTGCTCC+AGG + chr6_3:7930261-7930280 Msa0936960:intron 60.0%
AGTCTGAACCCCCTGCTCCA+GGG + chr6_3:7930262-7930281 Msa0936960:intron 60.0%
TTGCCAAGACCCTGGAGCAG+GGG - chr6_3:7930274-7930293 None:intergenic 60.0%
GTTGCCAAGACCCTGGAGCA+GGG - chr6_3:7930275-7930294 None:intergenic 60.0%
TCTTGGCGTTGCCAAGACCC+TGG - chr6_3:7930282-7930301 None:intergenic 60.0%
AACCCCCTGCTCCAGGGTCT+TGG + chr6_3:7930268-7930287 Msa0936960:intron 65.0%
TGCCAAGACCCTGGAGCAGG+GGG - chr6_3:7930273-7930292 None:intergenic 65.0%
CGTTGCCAAGACCCTGGAGC+AGG - chr6_3:7930276-7930295 None:intergenic 65.0%
GGGGGTTCAGCTGAACCCCC+TGG + chr6_3:7929897-7929916 Msa0936960:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 7927758 7933605 7927758 ID=Msa0936960;Name=Msa0936960
chr6_3 mRNA 7927758 7933605 7927758 ID=Msa0936960-mRNA-1;Parent=Msa0936960;Name=Msa0936960-mRNA-1;_AED=0.08;_eAED=0.08;_QI=193|1|1|1|1|1|5|98|375
chr6_3 exon 7927758 7928140 7927758 ID=Msa0936960-mRNA-1:exon:2612;Parent=Msa0936960-mRNA-1
chr6_3 exon 7928290 7928339 7928290 ID=Msa0936960-mRNA-1:exon:2613;Parent=Msa0936960-mRNA-1
chr6_3 exon 7931372 7931495 7931372 ID=Msa0936960-mRNA-1:exon:2614;Parent=Msa0936960-mRNA-1
chr6_3 exon 7931867 7931974 7931867 ID=Msa0936960-mRNA-1:exon:2615;Parent=Msa0936960-mRNA-1
chr6_3 exon 7932852 7933605 7932852 ID=Msa0936960-mRNA-1:exon:2616;Parent=Msa0936960-mRNA-1
chr6_3 five_prime_UTR 7927758 7927950 7927758 ID=Msa0936960-mRNA-1:five_prime_utr;Parent=Msa0936960-mRNA-1
chr6_3 CDS 7927951 7928140 7927951 ID=Msa0936960-mRNA-1:cds;Parent=Msa0936960-mRNA-1
chr6_3 CDS 7928290 7928339 7928290 ID=Msa0936960-mRNA-1:cds;Parent=Msa0936960-mRNA-1
chr6_3 CDS 7931372 7931495 7931372 ID=Msa0936960-mRNA-1:cds;Parent=Msa0936960-mRNA-1
chr6_3 CDS 7931867 7931974 7931867 ID=Msa0936960-mRNA-1:cds;Parent=Msa0936960-mRNA-1
chr6_3 CDS 7932852 7933507 7932852 ID=Msa0936960-mRNA-1:cds;Parent=Msa0936960-mRNA-1
chr6_3 three_prime_UTR 7933508 7933605 7933508 ID=Msa0936960-mRNA-1:three_prime_utr;Parent=Msa0936960-mRNA-1
Gene Sequence

>Msa0936960

ATGATGACCAAGATATTTGTGCTACTATGTCTTCTCTTCTTAGCTGTTTCTGGATTTGTCAATGGCTCAATCCATAAGAAGGAGAAGAATGATGATATTAAATTGTTTGAGCTCAAGAAAGGTGATCTTACTTTGAAGGTCACTAACTGGGGTGCTACACTTGTATCATTAGTCCTACCTGACAAGAATGGAAAGTTAGGTGATATTGTTCTTGGATATGATACTCCCGAAGCATATACTAATGATTCATCATACTTTGGAGCAACCGTTGGTAGGGTTGCTAACAGAATTGGAGGAGCTCAGTTTACTCTAAATGGAATCCATTACAAATTAATTGCTAATGAAGGAAACAACACTCTTCATGGTGGACCTAGAGGATTCAGTGATGTTCTTTGGAAAGTGGAAAAGTATGTAAGAGAAGGTGATCAACCCCTGATCAAATTCAGTTACCATAGTTTTGATGGTGAAGAAGGATTTCCTGGTGACCTCAAAGTAACTGTAAGCTACATTCTAGGAAAAAATTCCCTAACCATAATTATGCAAGCAAAAGCTCTTAACAAACCTACACCAGTAAACTTAGTTAACCATGCCTATTGGAACCTAGGAAACCACAACAGTGGCAACATTTTAGATGAAGTTGTTCAAATTTTTGGATCAAAATTCACACCTTTTGACAATAACCTTATTCCAACCGGAAAAATTTCATCAGTCAAAGGAACACCAAATGATTTCGTAAAGCCACAAATTGTTGGTGCAAGAATTAATCAATTACCAAAAACTAATGGTTATAACGTTAATTATGTGCTTAATAAAGGAAAATTAGAGAACAAAGAAGGATTAAAGGTTGCAGCTATAGTGATGGATAAGAAATCAGGGAGAGTTATGAAGCTTAGTACTAATGCTCCTGGATTGCAATTTTATAGTGCAAATTTTGTGAAGAATGATAAGGGAAAAGGAGGGTTTGTTTATCAACCACGTTCAGCACTTTGTTTGGAGAGTCAAGCTTTTCCTGATTCTGTTAATCATCCTAATTTTCCTTCAACTATTGTTACAAAAGAAAAGCCTTATAAGCATGTTATGTTGTTGAAGTTTTCCACCGAAGTTCCACATGCTTTTTCACAATTCTAA

Protein sequence

>Msa0936960

MMTKIFVLLCLLFLAVSGFVNGSIHKKEKNDDIKLFELKKGDLTLKVTNWGATLVSLVLPDKNGKLGDIVLGYDTPEAYTNDSSYFGATVGRVANRIGGAQFTLNGIHYKLIANEGNNTLHGGPRGFSDVLWKVEKYVREGDQPLIKFSYHSFDGEEGFPGDLKVTVSYILGKNSLTIIMQAKALNKPTPVNLVNHAYWNLGNHNSGNILDEVVQIFGSKFTPFDNNLIPTGKISSVKGTPNDFVKPQIVGARINQLPKTNGYNVNYVLNKGKLENKEGLKVAAIVMDKKSGRVMKLSTNAPGLQFYSANFVKNDKGKGGFVYQPRSALCLESQAFPDSVNHPNFPSTIVTKEKPYKHVMLLKFSTEVPHAFSQF*