AlfalfaGEDB | Msa0936960

M. sativa cultivar zhongmu-4 / Msa0936960

KEGG: K01785
GO: GO:0003674 GO:0003824 GO:0004034 GO:0005975 GO:0005996 GO:0006006 GO:0006012 GO:0008150 GO:0008152 GO:0009056 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019318 GO:0019320 GO:0019388 GO:0033499 GO:0044238 GO:0044281 GO:0044282 GO:0046365 GO:0071704 GO:1901575
PFAM: PF01263.23

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0936960	KEH24988.1	95.733	375	15	1	2	375	1	375	0.0	728

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0936960	sp\|Q5EA79\|GALM_BOVIN	42.814	334	178	7	33	365	19	340	4.44e-83	259

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0434180	Msa0936960	0.804971	1.671855e-49	-8.615850e-47
Msa0440400	Msa0936960	0.807478	4.956261e-50	-8.615850e-47
Msa0723120	Msa0936960	0.801315	9.540872e-49	-8.615850e-47
Msa0904960	Msa0936960	0.818439	1.959312e-52	-8.615850e-47
Msa0927380	Msa0936960	0.800210	1.603876e-48	-8.615850e-47
Msa0936960	Msa1046460	0.802382	5.760339e-49	-8.615850e-47
Msa0936960	Msa1453320	0.800541	1.373103e-48	-8.615850e-47

Showing 1 to 7 of 7 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0936960	MtrunA17_Chr6g0452971	95.467	375	16	1	2	375	1	375	0.0	726
Msa0936960	MtrunA17_Chr6g0452991	94.133	375	21	1	2	375	1	375	0.0	719
Msa0936960	MtrunA17_Chr7g0217021	70.300	367	101	3	2	367	1	360	0.0	529
Msa0936960	MtrunA17_Chr4g0060521	52.786	341	152	4	25	364	23	355	2.94e-123	360
Msa0936960	MtrunA17_Chr6g0478501	49.415	342	166	5	28	367	3	339	3.87e-109	323

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0936960	AT3G47800.1	52.198	364	152	7	5	367	16	358	1.37e-127	371
Msa0936960	AT5G15140.1	55.988	334	140	5	33	365	160	487	1.45e-124	368
Msa0936960	AT3G17940.1	48.204	334	168	4	34	365	10	340	1.16e-108	322
Msa0936960	AT3G01260.1	43.114	334	160	8	33	365	119	423	9.69e-78	246

Showing 1 to 4 of 4 entries

Previous1Next

Find 87 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAGGAAAGTCAATG+TGG	0.671123	6_3:-7927847	None:intergenic
AAAAGCATGTGGAACTTCGG+TGG	0.606360	6_3:-7933473	None:intergenic
AAAGAGAAGTTTCAACTTCG+AGG	0.483276	6_3:-7927874	None:intergenic
AAAGCACTATAGATAGTACA+AGG	0.660537	6_3:-7933569	None:intergenic
AAAGGTTGCAGCTATAGTGA+TGG	0.595506	6_3:+7933219	Msa0936960:CDS
AAAGTCAATGTGGCTGCTTA+TGG	0.373826	6_3:-7927837	None:intergenic
AAATTATGAGTGGTTCTTAA+TGG	0.202194	6_3:-7927920	None:intergenic
AAATTGTTTGAGCTCAAGAA+AGG	0.494592	6_3:+7928050	Msa0936960:CDS
AACAACATAACATGCTTATA+AGG	0.235997	6_3:-7933442	None:intergenic
AACCATGCCTATTGGAACCT+AGG	0.568665	6_3:+7932962	Msa0936960:CDS

Showing 1 to 10 of 87 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GGTTTCTATATTGATCACTA+GGG	-	chr6_3:7927819-7927838	None:intergenic	30.0%
TGGTTTCTATATTGATCACT+AGG	-	chr6_3:7927820-7927839	None:intergenic	30.0%
AAAAGAAAGGAAAGTCAATG+TGG	-	chr6_3:7927850-7927869	None:intergenic	30.0%
ACATAGTAGCACAAATATCT+TGG	-	chr6_3:7927961-7927980	None:intergenic	30.0%
AAATTGTTTGAGCTCAAGAA+AGG	+	chr6_3:7928050-7928069	Msa0936960:CDS	30.0%
TTGTATTTACCATTCTTGTC+AGG	-	chr6_3:7928131-7928150	None:intergenic	30.0%
ATCAAACTAGAATGTTCAAC+TGG	+	chr6_3:7928235-7928254	Msa0936960:intron	30.0%
AAGTTAGGTGATATTGTTCT+TGG	+	chr6_3:7928292-7928311	Msa0936960:CDS	30.0%
ATGACTTACAGTATATGCTT+CGG	-	chr6_3:7928329-7928348	None:intergenic	30.0%
CAAAGAATTGAAGAAAGACT+TGG	-	chr6_3:7928440-7928459	None:intergenic	30.0%

Showing 1 to 10 of 373 entries

Previous1 2 3 4 5…38Next

Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	7927758	7933605	7927758	ID=Msa0936960;Name=Msa0936960
chr6_3	mRNA	7927758	7933605	7927758	ID=Msa0936960-mRNA-1;Parent=Msa0936960;Name=Msa0936960-mRNA-1;_AED=0.08;_eAED=0.08;_QI=193\|1\|1\|1\|1\|1\|5\|98\|375
chr6_3	exon	7927758	7928140	7927758	ID=Msa0936960-mRNA-1:exon:2612;Parent=Msa0936960-mRNA-1
chr6_3	exon	7928290	7928339	7928290	ID=Msa0936960-mRNA-1:exon:2613;Parent=Msa0936960-mRNA-1
chr6_3	exon	7931372	7931495	7931372	ID=Msa0936960-mRNA-1:exon:2614;Parent=Msa0936960-mRNA-1
chr6_3	exon	7931867	7931974	7931867	ID=Msa0936960-mRNA-1:exon:2615;Parent=Msa0936960-mRNA-1
chr6_3	exon	7932852	7933605	7932852	ID=Msa0936960-mRNA-1:exon:2616;Parent=Msa0936960-mRNA-1
chr6_3	five_prime_UTR	7927758	7927950	7927758	ID=Msa0936960-mRNA-1:five_prime_utr;Parent=Msa0936960-mRNA-1
chr6_3	CDS	7927951	7928140	7927951	ID=Msa0936960-mRNA-1:cds;Parent=Msa0936960-mRNA-1
chr6_3	CDS	7928290	7928339	7928290	ID=Msa0936960-mRNA-1:cds;Parent=Msa0936960-mRNA-1
chr6_3	CDS	7931372	7931495	7931372	ID=Msa0936960-mRNA-1:cds;Parent=Msa0936960-mRNA-1
chr6_3	CDS	7931867	7931974	7931867	ID=Msa0936960-mRNA-1:cds;Parent=Msa0936960-mRNA-1
chr6_3	CDS	7932852	7933507	7932852	ID=Msa0936960-mRNA-1:cds;Parent=Msa0936960-mRNA-1
chr6_3	three_prime_UTR	7933508	7933605	7933508	ID=Msa0936960-mRNA-1:three_prime_utr;Parent=Msa0936960-mRNA-1

Gene Sequence

>Msa0936960

ATGATGACCAAGATATTTGTGCTACTATGTCTTCTCTTCTTAGCTGTTTCTGGATTTGTCAATGGCTCAATCCATAAGAAGGAGAAGAATGATGATATTAAATTGTTTGAGCTCAAGAAAGGTGATCTTACTTTGAAGGTCACTAACTGGGGTGCTACACTTGTATCATTAGTCCTACCTGACAAGAATGGAAAGTTAGGTGATATTGTTCTTGGATATGATACTCCCGAAGCATATACTAATGATTCATCATACTTTGGAGCAACCGTTGGTAGGGTTGCTAACAGAATTGGAGGAGCTCAGTTTACTCTAAATGGAATCCATTACAAATTAATTGCTAATGAAGGAAACAACACTCTTCATGGTGGACCTAGAGGATTCAGTGATGTTCTTTGGAAAGTGGAAAAGTATGTAAGAGAAGGTGATCAACCCCTGATCAAATTCAGTTACCATAGTTTTGATGGTGAAGAAGGATTTCCTGGTGACCTCAAAGTAACTGTAAGCTACATTCTAGGAAAAAATTCCCTAACCATAATTATGCAAGCAAAAGCTCTTAACAAACCTACACCAGTAAACTTAGTTAACCATGCCTATTGGAACCTAGGAAACCACAACAGTGGCAACATTTTAGATGAAGTTGTTCAAATTTTTGGATCAAAATTCACACCTTTTGACAATAACCTTATTCCAACCGGAAAAATTTCATCAGTCAAAGGAACACCAAATGATTTCGTAAAGCCACAAATTGTTGGTGCAAGAATTAATCAATTACCAAAAACTAATGGTTATAACGTTAATTATGTGCTTAATAAAGGAAAATTAGAGAACAAAGAAGGATTAAAGGTTGCAGCTATAGTGATGGATAAGAAATCAGGGAGAGTTATGAAGCTTAGTACTAATGCTCCTGGATTGCAATTTTATAGTGCAAATTTTGTGAAGAATGATAAGGGAAAAGGAGGGTTTGTTTATCAACCACGTTCAGCACTTTGTTTGGAGAGTCAAGCTTTTCCTGATTCTGTTAATCATCCTAATTTTCCTTCAACTATTGTTACAAAAGAAAAGCCTTATAAGCATGTTATGTTGTTGAAGTTTTCCACCGAAGTTCCACATGCTTTTTCACAATTCTAA

Protein sequence

>Msa0936960

MMTKIFVLLCLLFLAVSGFVNGSIHKKEKNDDIKLFELKKGDLTLKVTNWGATLVSLVLPDKNGKLGDIVLGYDTPEAYTNDSSYFGATVGRVANRIGGAQFTLNGIHYKLIANEGNNTLHGGPRGFSDVLWKVEKYVREGDQPLIKFSYHSFDGEEGFPGDLKVTVSYILGKNSLTIIMQAKALNKPTPVNLVNHAYWNLGNHNSGNILDEVVQIFGSKFTPFDNNLIPTGKISSVKGTPNDFVKPQIVGARINQLPKTNGYNVNYVLNKGKLENKEGLKVAAIVMDKKSGRVMKLSTNAPGLQFYSANFVKNDKGKGGFVYQPRSALCLESQAFPDSVNHPNFPSTIVTKEKPYKHVMLLKFSTEVPHAFSQF*