Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936960 | KEH24988.1 | 95.733 | 375 | 15 | 1 | 2 | 375 | 1 | 375 | 0.0 | 728 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936960 | sp|Q5EA79|GALM_BOVIN | 42.814 | 334 | 178 | 7 | 33 | 365 | 19 | 340 | 4.44e-83 | 259 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0723120 | Msa0936960 | 0.801315 | 9.540872e-49 | -8.615850e-47 |
| Msa0434180 | Msa0936960 | 0.804971 | 1.671855e-49 | -8.615850e-47 |
| Msa0440400 | Msa0936960 | 0.807478 | 4.956261e-50 | -8.615850e-47 |
| Msa0904960 | Msa0936960 | 0.818439 | 1.959312e-52 | -8.615850e-47 |
| Msa0927380 | Msa0936960 | 0.800210 | 1.603876e-48 | -8.615850e-47 |
| Msa0936960 | Msa1046460 | 0.802382 | 5.760339e-49 | -8.615850e-47 |
| Msa0936960 | Msa1453320 | 0.800541 | 1.373103e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936960 | MtrunA17_Chr6g0452971 | 95.467 | 375 | 16 | 1 | 2 | 375 | 1 | 375 | 0.0 | 726 |
| Msa0936960 | MtrunA17_Chr6g0452991 | 94.133 | 375 | 21 | 1 | 2 | 375 | 1 | 375 | 0.0 | 719 |
| Msa0936960 | MtrunA17_Chr7g0217021 | 70.300 | 367 | 101 | 3 | 2 | 367 | 1 | 360 | 0.0 | 529 |
| Msa0936960 | MtrunA17_Chr4g0060521 | 52.786 | 341 | 152 | 4 | 25 | 364 | 23 | 355 | 2.94e-123 | 360 |
| Msa0936960 | MtrunA17_Chr6g0478501 | 49.415 | 342 | 166 | 5 | 28 | 367 | 3 | 339 | 3.87e-109 | 323 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936960 | AT3G47800.1 | 52.198 | 364 | 152 | 7 | 5 | 367 | 16 | 358 | 1.37e-127 | 371 |
| Msa0936960 | AT5G15140.1 | 55.988 | 334 | 140 | 5 | 33 | 365 | 160 | 487 | 1.45e-124 | 368 |
| Msa0936960 | AT3G17940.1 | 48.204 | 334 | 168 | 4 | 34 | 365 | 10 | 340 | 1.16e-108 | 322 |
| Msa0936960 | AT3G01260.1 | 43.114 | 334 | 160 | 8 | 33 | 365 | 119 | 423 | 9.69e-78 | 246 |
Find 87 sgRNAs with CRISPR-Local
Find 373 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCTTCTTAGCTGTTTC+TGG | 0.037891 | 6_3:+7927981 | Msa0936960:CDS |
| CATCATTCTTCTCCTTCTTA+TGG | 0.188818 | 6_3:-7928022 | None:intergenic |
| AAATTATGAGTGGTTCTTAA+TGG | 0.202194 | 6_3:-7927920 | None:intergenic |
| AGAGAACAAAGAAGGATTAA+AGG | 0.218075 | 6_3:+7933201 | Msa0936960:CDS |
| AACAACATAACATGCTTATA+AGG | 0.235997 | 6_3:-7933442 | None:intergenic |
| GGAGCTCAGTTTACTCTAAA+TGG | 0.254147 | 6_3:+7931426 | Msa0936960:CDS |
| GTTAATTATGTGCTTAATAA+AGG | 0.261601 | 6_3:+7933172 | Msa0936960:CDS |
| ACAATAGTTGAAGGAAAATT+AGG | 0.263993 | 6_3:-7933406 | None:intergenic |
| GAGGATTCAGTGATGTTCTT+TGG | 0.270041 | 6_3:+7931876 | Msa0936960:CDS |
| ACTTGACACTATGGAGTATT+AGG | 0.299707 | 6_3:+7927769 | Msa0936960:five_prime_UTR |
| GTAACTGTAAGCTACATTCT+AGG | 0.323605 | 6_3:+7932872 | Msa0936960:CDS |
| TAATTTGTTTCAGGAAAGTT+AGG | 0.323657 | 6_3:+7928277 | Msa0936960:intron |
| TTGCTTGCATAATTATGGTT+AGG | 0.325838 | 6_3:-7932904 | None:intergenic |
| TTACTTTGAAGGTCACTAAC+TGG | 0.341785 | 6_3:+7928078 | Msa0936960:CDS |
| AAGTTAGGTGATATTGTTCT+TGG | 0.341881 | 6_3:+7928292 | Msa0936960:CDS |
| ACCACGTTCAGCACTTTGTT+TGG | 0.345777 | 6_3:+7933351 | Msa0936960:CDS |
| GCATGGTTAACTAAGTTTAC+TGG | 0.363669 | 6_3:-7932947 | None:intergenic |
| TTAGGATGATTAACAGAATC+AGG | 0.363742 | 6_3:-7933388 | None:intergenic |
| AAAGTCAATGTGGCTGCTTA+TGG | 0.373826 | 6_3:-7927837 | None:intergenic |
| GCTGTTTCTGGATTTGTCAA+TGG | 0.379680 | 6_3:+7927993 | Msa0936960:CDS |
| ATTTGCATTACAGGATTTCC+TGG | 0.381140 | 6_3:+7932839 | Msa0936960:intron |
| TGTGGCTTTACGAAATCATT+TGG | 0.385685 | 6_3:-7933100 | None:intergenic |
| ATAGTGATGGATAAGAAATC+AGG | 0.386833 | 6_3:+7933232 | Msa0936960:CDS |
| GACAATAACCTTATTCCAAC+CGG | 0.387603 | 6_3:+7933052 | Msa0936960:CDS |
| GAAGGAAACAACACTCTTCA+TGG | 0.387877 | 6_3:+7931474 | Msa0936960:CDS |
| ACTTAGTTAACCATGCCTAT+TGG | 0.388489 | 6_3:+7932954 | Msa0936960:CDS |
| CATTAGCAATTAATTTGTAA+TGG | 0.396328 | 6_3:-7931452 | None:intergenic |
| CTTCTTCACCATCAAAACTA+TGG | 0.396435 | 6_3:-7931952 | None:intergenic |
| ATTAGCACAACTTGACACTA+TGG | 0.396934 | 6_3:+7927760 | Msa0936960:five_prime_UTR |
| CAGAATGATTCATCATACTT+TGG | 0.398226 | 6_3:+7931369 | Msa0936960:intron |
| GAAAGGTGATCTTACTTTGA+AGG | 0.398453 | 6_3:+7928067 | Msa0936960:CDS |
| GTGGTTTCCTAGGTTCCAAT+AGG | 0.398598 | 6_3:-7932969 | None:intergenic |
| TGCTTGCATAATTATGGTTA+GGG | 0.403065 | 6_3:-7932903 | None:intergenic |
| ATTCTTGCACCAACAATTTG+TGG | 0.406236 | 6_3:-7933118 | None:intergenic |
| AAGAACCACTCATAATTTGT+AGG | 0.410958 | 6_3:+7927925 | Msa0936960:five_prime_UTR |
| TTCGTAAAGCCACAAATTGT+TGG | 0.411274 | 6_3:+7933109 | Msa0936960:CDS |
| TATGGTAACTGAATTTGATC+AGG | 0.411930 | 6_3:-7931934 | None:intergenic |
| GGTAGGGTTGCTAACAGAAT+TGG | 0.416927 | 6_3:+7931402 | Msa0936960:CDS |
| TACAAATTAATTGCTAATGA+AGG | 0.427010 | 6_3:+7931456 | Msa0936960:CDS |
| GCACTATAAAATTGCAATCC+AGG | 0.428333 | 6_3:-7933283 | None:intergenic |
| GGAATAAGGTTATTGTCAAA+AGG | 0.433564 | 6_3:-7933046 | None:intergenic |
| TGGTTTCTATATTGATCACT+AGG | 0.438928 | 6_3:-7927817 | None:intergenic |
| TGTAGCTTACAGTTACTTTG+AGG | 0.447610 | 6_3:-7932865 | None:intergenic |
| TGACTTACAGTATATGCTTC+GGG | 0.448080 | 6_3:-7928325 | None:intergenic |
| GTGAAGAATGATAAGGGAAA+AGG | 0.455139 | 6_3:+7933313 | Msa0936960:CDS |
| CAGTGATGTTCTTTGGAAAG+TGG | 0.458791 | 6_3:+7931883 | Msa0936960:CDS |
| AAGCTTAGTACTAATGCTCC+TGG | 0.469025 | 6_3:+7933265 | Msa0936960:CDS |
| ATGACTTACAGTATATGCTT+CGG | 0.470863 | 6_3:-7928326 | None:intergenic |
| CTTTGGAGCAACCGTTGGTA+GGG | 0.471024 | 6_3:+7931386 | Msa0936960:CDS |
| ACATAGTAGCACAAATATCT+TGG | 0.474127 | 6_3:-7927958 | None:intergenic |
| TGCCACTGTTGTGGTTTCCT+AGG | 0.477157 | 6_3:-7932979 | None:intergenic |
| AAGAGAAGTTTCAACTTCGA+GGG | 0.479964 | 6_3:-7927873 | None:intergenic |
| TACTTTGAAGGTCACTAACT+GGG | 0.480765 | 6_3:+7928079 | Msa0936960:CDS |
| AAAGAGAAGTTTCAACTTCG+AGG | 0.483276 | 6_3:-7927874 | None:intergenic |
| TTGTATTTACCATTCTTGTC+AGG | 0.487865 | 6_3:-7928128 | None:intergenic |
| AAATTGTTTGAGCTCAAGAA+AGG | 0.494592 | 6_3:+7928050 | Msa0936960:CDS |
| GGAAAATTAGAGAACAAAGA+AGG | 0.503162 | 6_3:+7933193 | Msa0936960:CDS |
| TTAACTAAGTTTACTGGTGT+AGG | 0.515178 | 6_3:-7932941 | None:intergenic |
| CAATGGCTCAATCCATAAGA+AGG | 0.524105 | 6_3:+7928010 | Msa0936960:CDS |
| AAGAATGATAAGGGAAAAGG+AGG | 0.537569 | 6_3:+7933316 | Msa0936960:CDS |
| ACTTTGGAGCAACCGTTGGT+AGG | 0.537610 | 6_3:+7931385 | Msa0936960:CDS |
| GGTTTCTATATTGATCACTA+GGG | 0.547408 | 6_3:-7927816 | None:intergenic |
| TTCCTAGGTTCCAATAGGCA+TGG | 0.549117 | 6_3:-7932964 | None:intergenic |
| ATGGTAACTGAATTTGATCA+GGG | 0.552134 | 6_3:-7931933 | None:intergenic |
| GTGGAAAAGTATGTAAGAGA+AGG | 0.556236 | 6_3:+7931902 | Msa0936960:CDS |
| AGGGTTGCTAACAGAATTGG+AGG | 0.557121 | 6_3:+7931405 | Msa0936960:CDS |
| ACAGTTACTTTGAGGTCACC+AGG | 0.559345 | 6_3:-7932857 | None:intergenic |
| AGAACATCACTGAATCCTCT+AGG | 0.566952 | 6_3:-7931872 | None:intergenic |
| CTAAAATGTTGCCACTGTTG+TGG | 0.568105 | 6_3:-7932988 | None:intergenic |
| ATATTGATCACTAGGGAATG+TGG | 0.568648 | 6_3:-7927809 | None:intergenic |
| AACCATGCCTATTGGAACCT+AGG | 0.568665 | 6_3:+7932962 | Msa0936960:CDS |
| TTAGTCCTACCTGACAAGAA+TGG | 0.570956 | 6_3:+7928119 | Msa0936960:CDS |
| ATTTACCATTCTTGTCAGGT+AGG | 0.582202 | 6_3:-7928124 | None:intergenic |
| TCATACTTTGGAGCAACCGT+TGG | 0.584842 | 6_3:+7931381 | Msa0936960:CDS |
| AAAGGTTGCAGCTATAGTGA+TGG | 0.595506 | 6_3:+7933219 | Msa0936960:CDS |
| AGAGAAGTTTCAACTTCGAG+GGG | 0.602670 | 6_3:-7927872 | None:intergenic |
| TAGTGATGGATAAGAAATCA+GGG | 0.603466 | 6_3:+7933233 | Msa0936960:CDS |
| AAAAGCATGTGGAACTTCGG+TGG | 0.606360 | 6_3:-7933473 | None:intergenic |
| TCTGTTAGCAACCCTACCAA+CGG | 0.641516 | 6_3:-7931397 | None:intergenic |
| ACTTTGAAGGTCACTAACTG+GGG | 0.657814 | 6_3:+7928080 | Msa0936960:CDS |
| AAAGCACTATAGATAGTACA+AGG | 0.660537 | 6_3:-7933569 | None:intergenic |
| TCCAAACAAAGTGCTGAACG+TGG | 0.666017 | 6_3:-7933352 | None:intergenic |
| AAAAGAAAGGAAAGTCAATG+TGG | 0.671123 | 6_3:-7927847 | None:intergenic |
| CTTTACTTAGGTGGACCTAG+AGG | 0.691401 | 6_3:+7931857 | Msa0936960:intron |
| TGGTAACTGAATTTGATCAG+GGG | 0.692121 | 6_3:-7931932 | None:intergenic |
| AGAATGATAAGGGAAAAGGA+GGG | 0.703237 | 6_3:+7933317 | Msa0936960:CDS |
| AACCTAGGAAACCACAACAG+TGG | 0.725872 | 6_3:+7932977 | Msa0936960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTAGTTAACATTAATT+GGG | - | chr6_3:7928924-7928943 | None:intergenic | 10.0% |
| !!! | TTATTTTAGTTAACATTAAT+TGG | - | chr6_3:7928925-7928944 | None:intergenic | 10.0% |
| !! | ATATATTTGCATATTAAAAA+TGG | + | chr6_3:7929174-7929193 | Msa0936960:intron | 10.0% |
| !! | AAAAAAAAAAAAAAAACAAC+TGG | - | chr6_3:7930773-7930792 | None:intergenic | 10.0% |
| !! | ATTATAATCATAGTAAAATT+TGG | - | chr6_3:7931620-7931639 | None:intergenic | 10.0% |
| !! | TGAATTATTATTAATATTGT+TGG | - | chr6_3:7931697-7931716 | None:intergenic | 10.0% |
| !!! | TAATGGATTTTATAAATAGA+AGG | - | chr6_3:7927906-7927925 | None:intergenic | 15.0% |
| !! | TAAAATGTAATACATATTTC+AGG | - | chr6_3:7928366-7928385 | None:intergenic | 15.0% |
| !!! | AAATTTAGATATTTGTTGTA+GGG | - | chr6_3:7929619-7929638 | None:intergenic | 15.0% |
| !! | TTAAGTTACTAAATTATTGA+GGG | - | chr6_3:7929730-7929749 | None:intergenic | 15.0% |
| !! | ATTAAGTTACTAAATTATTG+AGG | - | chr6_3:7929731-7929750 | None:intergenic | 15.0% |
| !!! | TTAATTTTAAGAAAACAATG+TGG | + | chr6_3:7929817-7929836 | Msa0936960:intron | 15.0% |
| !!! | ATTGTTGTTCTTTTTTATAA+TGG | - | chr6_3:7931058-7931077 | None:intergenic | 15.0% |
| !!! | ATATCATTGACATTTTTTTA+AGG | - | chr6_3:7931095-7931114 | None:intergenic | 15.0% |
| !!! | ATATAAAGCAAAATTTTTTG+TGG | - | chr6_3:7931730-7931749 | None:intergenic | 15.0% |
| !!! | CTTAATATTTTACTTTACTT+AGG | + | chr6_3:7931845-7931864 | Msa0936960:intron | 15.0% |
| !! | ATCAATAAAGCAACAATTAA+TGG | - | chr6_3:7928195-7928214 | None:intergenic | 20.0% |
| !! | TAACATTAATTGGGAAATAT+CGG | - | chr6_3:7928915-7928934 | None:intergenic | 20.0% |
| !!! | TGGATATAGTACTTTTTTTT+TGG | + | chr6_3:7928976-7928995 | Msa0936960:intron | 20.0% |
| !! | TTAAAAATCAAGATACGATA+CGG | - | chr6_3:7929252-7929271 | None:intergenic | 20.0% |
| !!! | CAAATTTAGATATTTGTTGT+AGG | - | chr6_3:7929620-7929639 | None:intergenic | 20.0% |
| !! | CTACAACAAATATCTAAATT+TGG | + | chr6_3:7929618-7929637 | Msa0936960:intron | 20.0% |
| !!! | AACGAATAAACCTTTTTTTA+GGG | - | chr6_3:7929648-7929667 | None:intergenic | 20.0% |
| !!! | AAACGAATAAACCTTTTTTT+AGG | - | chr6_3:7929649-7929668 | None:intergenic | 20.0% |
| !!! | TCGTAAATAATGTTTTTTAG+AGG | + | chr6_3:7929700-7929719 | Msa0936960:intron | 20.0% |
| !!! | CGTAAATAATGTTTTTTAGA+GGG | + | chr6_3:7929701-7929720 | Msa0936960:intron | 20.0% |
| !!! | GTAAATAATGTTTTTTAGAG+GGG | + | chr6_3:7929702-7929721 | Msa0936960:intron | 20.0% |
| !!! | CTATTTTTGATTTTGATATG+CGG | + | chr6_3:7930966-7930985 | Msa0936960:intron | 20.0% |
| !!! | TTTTGTTTGTTTTAGTAAAG+TGG | + | chr6_3:7931318-7931337 | Msa0936960:intron | 20.0% |
| !!! | CATTAGCAATTAATTTGTAA+TGG | - | chr6_3:7931455-7931474 | None:intergenic | 20.0% |
| !! | TACAAATTAATTGCTAATGA+AGG | + | chr6_3:7931456-7931475 | Msa0936960:CDS | 20.0% |
| !! | TTTACTATGATTATAATGTG+TGG | + | chr6_3:7931623-7931642 | Msa0936960:intron | 20.0% |
| !!! | AATATTTTACTTTACTTAGG+TGG | + | chr6_3:7931848-7931867 | Msa0936960:intron | 20.0% |
| !! | ATCCAAACATATTTATAAAG+AGG | - | chr6_3:7932363-7932382 | None:intergenic | 20.0% |
| !! | CTTTATAAATATGTTTGGAT+TGG | + | chr6_3:7932363-7932382 | Msa0936960:intron | 20.0% |
| !! | TATGAAATGATACATAGAAA+GGG | - | chr6_3:7932547-7932566 | None:intergenic | 20.0% |
| !! | ATATGAAATGATACATAGAA+AGG | - | chr6_3:7932548-7932567 | None:intergenic | 20.0% |
| !!! | AACTTTTAGATAATGATGAA+AGG | - | chr6_3:7932654-7932673 | None:intergenic | 20.0% |
| !! | ATATAAACTACCCTTATATA+AGG | + | chr6_3:7932681-7932700 | Msa0936960:intron | 20.0% |
| !! | ATAGTATTTATTTGCATTAC+AGG | + | chr6_3:7932830-7932849 | Msa0936960:intron | 20.0% |
| !! | AATCAATTACCAAAAACTAA+TGG | + | chr6_3:7933142-7933161 | Msa0936960:CDS | 20.0% |
| !! | GTTAATTATGTGCTTAATAA+AGG | + | chr6_3:7933172-7933191 | Msa0936960:CDS | 20.0% |
| !!! | AAATTTTGTGAAGAATGATA+AGG | + | chr6_3:7933306-7933325 | Msa0936960:CDS | 20.0% |
| !!! | AATTTTGTGAAGAATGATAA+GGG | + | chr6_3:7933307-7933326 | Msa0936960:CDS | 20.0% |
| ! | AAATTATGAGTGGTTCTTAA+TGG | - | chr6_3:7927923-7927942 | None:intergenic | 25.0% |
| !! | ATTTTCCTACAAATTATGAG+TGG | - | chr6_3:7927933-7927952 | None:intergenic | 25.0% |
| ! | AATAAAGCAACAATTAATGG+AGG | - | chr6_3:7928192-7928211 | None:intergenic | 25.0% |
| !!! | TGCTTCTATTAATTTGTTTC+AGG | + | chr6_3:7928268-7928287 | Msa0936960:intron | 25.0% |
| !!! | TAATTTGTTTCAGGAAAGTT+AGG | + | chr6_3:7928277-7928296 | Msa0936960:intron | 25.0% |
| ! | AGTGCTATACTATATCAAAA+AGG | - | chr6_3:7929030-7929049 | None:intergenic | 25.0% |
| ! | AAAACAATGGAAAGAGAAAA+AGG | - | chr6_3:7929489-7929508 | None:intergenic | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | - | chr6_3:7929502-7929521 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | - | chr6_3:7929515-7929534 | None:intergenic | 25.0% |
| ! | TCATCAAAATTGTCATCAAA+TGG | + | chr6_3:7929540-7929559 | Msa0936960:intron | 25.0% |
| ! | ATGGATGTCAAAATATCAAA+TGG | + | chr6_3:7929559-7929578 | Msa0936960:intron | 25.0% |
| !! | AATTTGAGATGATAAGTTGT+AGG | + | chr6_3:7929748-7929767 | Msa0936960:intron | 25.0% |
| ! | TGTCTTTGATACTACATTTA+TGG | - | chr6_3:7929776-7929795 | None:intergenic | 25.0% |
| !!! | TACAGTTTTTTAAGGATTGT+AGG | - | chr6_3:7929939-7929958 | None:intergenic | 25.0% |
| ! | TGCAACATTATATAATCAGA+GGG | - | chr6_3:7929992-7930011 | None:intergenic | 25.0% |
| ! | TTAAGAAAATGGAAAAGTGA+AGG | - | chr6_3:7930150-7930169 | None:intergenic | 25.0% |
| ! | TGGAAAACGTATTAAGAAAA+TGG | - | chr6_3:7930161-7930180 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTATATGCTCTTG+AGG | + | chr6_3:7930793-7930812 | Msa0936960:intron | 25.0% |
| !!! | AAGATTTGTTGAATAAGTGT+TGG | - | chr6_3:7931136-7931155 | None:intergenic | 25.0% |
| ! | CAATATGTATTTAGAAACAG+AGG | - | chr6_3:7931524-7931543 | None:intergenic | 25.0% |
| ! | ATTAACATGAATGAAATGAC+TGG | - | chr6_3:7931550-7931569 | None:intergenic | 25.0% |
| ! | TGTGGTACACAAATAATAAT+TGG | + | chr6_3:7931641-7931660 | Msa0936960:intron | 25.0% |
| !!! | TTGTTTCTAATAGACATTGA+AGG | - | chr6_3:7932018-7932037 | None:intergenic | 25.0% |
| ! | CAACAATACTACGATATAAT+TGG | + | chr6_3:7932107-7932126 | Msa0936960:intron | 25.0% |
| ! | TACACCAGTATTATGAAAAT+TGG | - | chr6_3:7932195-7932214 | None:intergenic | 25.0% |
| !! | TTTCTTCCTTTTGTATAGAA+TGG | + | chr6_3:7932233-7932252 | Msa0936960:intron | 25.0% |
| !! | TTCTTCCTTTTGTATAGAAT+GGG | + | chr6_3:7932234-7932253 | Msa0936960:intron | 25.0% |
| ! | CACCTCTTTATAAATATGTT+TGG | + | chr6_3:7932358-7932377 | Msa0936960:intron | 25.0% |
| !! | TATAAATATGTTTGGATTGG+TGG | + | chr6_3:7932366-7932385 | Msa0936960:intron | 25.0% |
| ! | TGGGATCTTAAAAAAAATCA+TGG | - | chr6_3:7932417-7932436 | None:intergenic | 25.0% |
| !!! | TTTTAGGAAAAGTTACGTTT+GGG | - | chr6_3:7932436-7932455 | None:intergenic | 25.0% |
| !!! | ATTTTAGGAAAAGTTACGTT+TGG | - | chr6_3:7932437-7932456 | None:intergenic | 25.0% |
| ! | TTCATATTAGAGATAGTAGT+TGG | + | chr6_3:7932561-7932580 | Msa0936960:intron | 25.0% |
| ! | GATGTGATTACCTAATATAA+GGG | + | chr6_3:7932626-7932645 | Msa0936960:intron | 25.0% |
| ! | GATGTAATCACCTTATATAA+GGG | - | chr6_3:7932694-7932713 | None:intergenic | 25.0% |
| ! | AGATGTAATCACCTTATATA+AGG | - | chr6_3:7932695-7932714 | None:intergenic | 25.0% |
| !! | GATGAAGTTGTTCAAATTTT+TGG | + | chr6_3:7933010-7933029 | Msa0936960:CDS | 25.0% |
| !! | TTTGACTGATGAAATTTTTC+CGG | - | chr6_3:7933074-7933093 | None:intergenic | 25.0% |
| !!! | ACGTTATAACCATTAGTTTT+TGG | - | chr6_3:7933154-7933173 | None:intergenic | 25.0% |
| ! | ACAATAGTTGAAGGAAAATT+AGG | - | chr6_3:7933409-7933428 | None:intergenic | 25.0% |
| !! | TCTTTTGTAACAATAGTTGA+AGG | - | chr6_3:7933418-7933437 | None:intergenic | 25.0% |
| ! | AACAACATAACATGCTTATA+AGG | - | chr6_3:7933445-7933464 | None:intergenic | 25.0% |
| !! | TATAGTGCTTTTAGTATGTT+TGG | + | chr6_3:7933581-7933600 | Msa0936960:three_prime_UTR | 25.0% |
| GGTTTCTATATTGATCACTA+GGG | - | chr6_3:7927819-7927838 | None:intergenic | 30.0% | |
| TGGTTTCTATATTGATCACT+AGG | - | chr6_3:7927820-7927839 | None:intergenic | 30.0% | |
| AAAAGAAAGGAAAGTCAATG+TGG | - | chr6_3:7927850-7927869 | None:intergenic | 30.0% | |
| ! | AAGAACCACTCATAATTTGT+AGG | + | chr6_3:7927925-7927944 | Msa0936960:five_prime_UTR | 30.0% |
| ACATAGTAGCACAAATATCT+TGG | - | chr6_3:7927961-7927980 | None:intergenic | 30.0% | |
| AAATTGTTTGAGCTCAAGAA+AGG | + | chr6_3:7928050-7928069 | Msa0936960:CDS | 30.0% | |
| TTGTATTTACCATTCTTGTC+AGG | - | chr6_3:7928131-7928150 | None:intergenic | 30.0% | |
| ATCAAACTAGAATGTTCAAC+TGG | + | chr6_3:7928235-7928254 | Msa0936960:intron | 30.0% | |
| AAGTTAGGTGATATTGTTCT+TGG | + | chr6_3:7928292-7928311 | Msa0936960:CDS | 30.0% | |
| ATGACTTACAGTATATGCTT+CGG | - | chr6_3:7928329-7928348 | None:intergenic | 30.0% | |
| CAAAGAATTGAAGAAAGACT+TGG | - | chr6_3:7928440-7928459 | None:intergenic | 30.0% | |
| TTCATAGAAGAAAAGATGTG+TGG | - | chr6_3:7928471-7928490 | None:intergenic | 30.0% | |
| ! | ACACATCTTTTCTTCTATGA+AGG | + | chr6_3:7928470-7928489 | Msa0936960:intron | 30.0% |
| ! | TTGATATAGTATAGCACTGA+TGG | + | chr6_3:7929032-7929051 | Msa0936960:intron | 30.0% |
| ACCACAAAATATCCAACTTT+GGG | + | chr6_3:7929344-7929363 | Msa0936960:intron | 30.0% | |
| !!! | AACCACTTTTTGACAACTTT+TGG | + | chr6_3:7929417-7929436 | Msa0936960:intron | 30.0% |
| !! | ATTTGGTGTTCCCTAAAAAA+AGG | + | chr6_3:7929635-7929654 | Msa0936960:intron | 30.0% |
| TAGGATTTCAACTAGAATCA+TGG | + | chr6_3:7929854-7929873 | Msa0936960:intron | 30.0% | |
| AGGATTTCAACTAGAATCAT+GGG | + | chr6_3:7929855-7929874 | Msa0936960:intron | 30.0% | |
| !! | TGTGAATTTTAATAGACCAG+GGG | - | chr6_3:7929916-7929935 | None:intergenic | 30.0% |
| !! | GTGTGAATTTTAATAGACCA+GGG | - | chr6_3:7929917-7929936 | None:intergenic | 30.0% |
| !!! | GTTCATGGTACAGTTTTTTA+AGG | - | chr6_3:7929947-7929966 | None:intergenic | 30.0% |
| TTATATAATCAGAGGGTTCA+TGG | - | chr6_3:7929985-7930004 | None:intergenic | 30.0% | |
| GTGCAACATTATATAATCAG+AGG | - | chr6_3:7929993-7930012 | None:intergenic | 30.0% | |
| AAAATGGAAAAGTGAAGGAA+GGG | - | chr6_3:7930145-7930164 | None:intergenic | 30.0% | |
| TTACATGCATAATGTAGACA+TGG | - | chr6_3:7930181-7930200 | None:intergenic | 30.0% | |
| ! | TATGCATGTAAACTTTTGAG+TGG | + | chr6_3:7930190-7930209 | Msa0936960:intron | 30.0% |
| !! | TTTGGTACATGATTTTTGGA+TGG | + | chr6_3:7930411-7930430 | Msa0936960:intron | 30.0% |
| ATACAATTCAGTTTATCTCC+TGG | + | chr6_3:7930619-7930638 | Msa0936960:intron | 30.0% | |
| !!! | TAGTTTTTTAGGAATCACTC+TGG | + | chr6_3:7930645-7930664 | Msa0936960:intron | 30.0% |
| !!! | TCTTTTCATTGGTGTTAGTT+GGG | + | chr6_3:7930932-7930951 | Msa0936960:intron | 30.0% |
| !! | AATAAGTGTTGGCGATTTAA+AGG | - | chr6_3:7931125-7931144 | None:intergenic | 30.0% |
| ! | CTTCAATGGCAATTCTAAAA+AGG | - | chr6_3:7931249-7931268 | None:intergenic | 30.0% |
| CAGAATGATTCATCATACTT+TGG | + | chr6_3:7931369-7931388 | Msa0936960:intron | 30.0% | |
| TGTATTTAGAAACAGAGGAA+GGG | - | chr6_3:7931519-7931538 | None:intergenic | 30.0% | |
| ATGTATTTAGAAACAGAGGA+AGG | - | chr6_3:7931520-7931539 | None:intergenic | 30.0% | |
| TAGATCAGTAAATGCATGAT+TGG | + | chr6_3:7931589-7931608 | Msa0936960:intron | 30.0% | |
| CATTTCACCATATAGAAACA+TGG | + | chr6_3:7931820-7931839 | Msa0936960:intron | 30.0% | |
| ! | TTAAGAGCCATGTTTCTATA+TGG | - | chr6_3:7931830-7931849 | None:intergenic | 30.0% |
| ATGGTAACTGAATTTGATCA+GGG | - | chr6_3:7931936-7931955 | None:intergenic | 30.0% | |
| TATGGTAACTGAATTTGATC+AGG | - | chr6_3:7931937-7931956 | None:intergenic | 30.0% | |
| !!! | TTCAGTTACCATAGTTTTGA+TGG | + | chr6_3:7931944-7931963 | Msa0936960:CDS | 30.0% |
| ! | TCTAGTTCAACTAGTTGAAT+CGG | + | chr6_3:7932159-7932178 | Msa0936960:intron | 30.0% |
| AGTATCCCATTCTATACAAA+AGG | - | chr6_3:7932242-7932261 | None:intergenic | 30.0% | |
| ! | CGTAACTTTTCCTAAAATCA+TGG | + | chr6_3:7932439-7932458 | Msa0936960:intron | 30.0% |
| ! | AACTTTTCCTAAAATCATGG+TGG | + | chr6_3:7932442-7932461 | Msa0936960:intron | 30.0% |
| ATACATAGAAAGGGATGTAA+AGG | - | chr6_3:7932538-7932557 | None:intergenic | 30.0% | |
| GGATGTGATTACCTAATATA+AGG | + | chr6_3:7932625-7932644 | Msa0936960:intron | 30.0% | |
| !! | ATGAAAGGTACCCTTATATT+AGG | - | chr6_3:7932639-7932658 | None:intergenic | 30.0% |
| TGCTTGCATAATTATGGTTA+GGG | - | chr6_3:7932906-7932925 | None:intergenic | 30.0% | |
| TTGCTTGCATAATTATGGTT+AGG | - | chr6_3:7932907-7932926 | None:intergenic | 30.0% | |
| ! | AGCTTTTGCTTGCATAATTA+TGG | - | chr6_3:7932912-7932931 | None:intergenic | 30.0% |
| TTAACTAAGTTTACTGGTGT+AGG | - | chr6_3:7932944-7932963 | None:intergenic | 30.0% | |
| GGAATAAGGTTATTGTCAAA+AGG | - | chr6_3:7933049-7933068 | None:intergenic | 30.0% | |
| ! | AAATTTTTCCGGTTGGAATA+AGG | - | chr6_3:7933063-7933082 | None:intergenic | 30.0% |
| GGAAAAATTTCATCAGTCAA+AGG | + | chr6_3:7933073-7933092 | Msa0936960:CDS | 30.0% | |
| GGAAAATTAGAGAACAAAGA+AGG | + | chr6_3:7933193-7933212 | Msa0936960:CDS | 30.0% | |
| AGAGAACAAAGAAGGATTAA+AGG | + | chr6_3:7933201-7933220 | Msa0936960:CDS | 30.0% | |
| !! | ATAGTGATGGATAAGAAATC+AGG | + | chr6_3:7933232-7933251 | Msa0936960:CDS | 30.0% |
| !! | TAGTGATGGATAAGAAATCA+GGG | + | chr6_3:7933233-7933252 | Msa0936960:CDS | 30.0% |
| TTAGGATGATTAACAGAATC+AGG | - | chr6_3:7933391-7933410 | None:intergenic | 30.0% | |
| ! | TAGAATTGTGAAAAAGCATG+TGG | - | chr6_3:7933487-7933506 | None:intergenic | 30.0% |
| ! | AAAGCACTATAGATAGTACA+AGG | - | chr6_3:7933572-7933591 | None:intergenic | 30.0% |
| ATTAGCACAACTTGACACTA+TGG | + | chr6_3:7927760-7927779 | Msa0936960:five_prime_UTR | 35.0% | |
| ! | ACTTGACACTATGGAGTATT+AGG | + | chr6_3:7927769-7927788 | Msa0936960:five_prime_UTR | 35.0% |
| ATATTGATCACTAGGGAATG+TGG | - | chr6_3:7927812-7927831 | None:intergenic | 35.0% | |
| AAGAGAAGTTTCAACTTCGA+GGG | - | chr6_3:7927876-7927895 | None:intergenic | 35.0% | |
| AAAGAGAAGTTTCAACTTCG+AGG | - | chr6_3:7927877-7927896 | None:intergenic | 35.0% | |
| CATCATTCTTCTCCTTCTTA+TGG | - | chr6_3:7928025-7928044 | None:intergenic | 35.0% | |
| GAAAGGTGATCTTACTTTGA+AGG | + | chr6_3:7928067-7928086 | Msa0936960:CDS | 35.0% | |
| ! | TTACTTTGAAGGTCACTAAC+TGG | + | chr6_3:7928078-7928097 | Msa0936960:CDS | 35.0% |
| ! | TACTTTGAAGGTCACTAACT+GGG | + | chr6_3:7928079-7928098 | Msa0936960:CDS | 35.0% |
| ATTTACCATTCTTGTCAGGT+AGG | - | chr6_3:7928127-7928146 | None:intergenic | 35.0% | |
| AAGCAACAATTAATGGAGGA+TGG | - | chr6_3:7928188-7928207 | None:intergenic | 35.0% | |
| TGACTTACAGTATATGCTTC+GGG | - | chr6_3:7928328-7928347 | None:intergenic | 35.0% | |
| AAGGAGGAGATAAGAAATAG+AGG | - | chr6_3:7928615-7928634 | None:intergenic | 35.0% | |
| ! | CTATTTCTTATCTCCTCCTT+TGG | + | chr6_3:7928615-7928634 | Msa0936960:intron | 35.0% |
| AAGATGACTAGATATCGTCA+CGG | - | chr6_3:7928647-7928666 | None:intergenic | 35.0% | |
| !!! | TCATCCATTTTGAAGTATCG+TGG | - | chr6_3:7928724-7928743 | None:intergenic | 35.0% |
| GATACTCATCTGATACGTAT+CGG | - | chr6_3:7928795-7928814 | None:intergenic | 35.0% | |
| TATCGGTGCAGGATAATTAT+TGG | - | chr6_3:7928886-7928905 | None:intergenic | 35.0% | |
| !!! | AGTACTGATGTGTTCTGTTT+TGG | + | chr6_3:7928956-7928975 | Msa0936960:intron | 35.0% |
| ! | ATTTTTCCGTATCAGCGTAT+CGG | + | chr6_3:7929273-7929292 | Msa0936960:intron | 35.0% |
| CACCACAAAATATCCAACTT+TGG | + | chr6_3:7929343-7929362 | Msa0936960:intron | 35.0% | |
| CCACAAAATATCCAACTTTG+GGG | + | chr6_3:7929345-7929364 | Msa0936960:intron | 35.0% | |
| GTCCAAAAGTTGTCAAAAAG+TGG | - | chr6_3:7929422-7929441 | None:intergenic | 35.0% | |
| AAAGAGAAAAAGGAAGAGAG+AGG | - | chr6_3:7929479-7929498 | None:intergenic | 35.0% | |
| TAATTTAGTAGCTCAGCTGT+TGG | + | chr6_3:7929675-7929694 | Msa0936960:intron | 35.0% | |
| TGTGGCAACTTCTTCTTTAT+AGG | + | chr6_3:7929835-7929854 | Msa0936960:intron | 35.0% | |
| ATTTCAACTAGAATCATGGG+CGG | + | chr6_3:7929858-7929877 | Msa0936960:intron | 35.0% | |
| !! | GTGAATTTTAATAGACCAGG+GGG | - | chr6_3:7929915-7929934 | None:intergenic | 35.0% |
| !! | GGTGTGAATTTTAATAGACC+AGG | - | chr6_3:7929918-7929937 | None:intergenic | 35.0% |
| !! | TTCATGGTCAGTTTTTAAGG+GGG | - | chr6_3:7929969-7929988 | None:intergenic | 35.0% |
| !! | GTTCATGGTCAGTTTTTAAG+GGG | - | chr6_3:7929970-7929989 | None:intergenic | 35.0% |
| ! | GGTTCATGGTCAGTTTTTAA+GGG | - | chr6_3:7929971-7929990 | None:intergenic | 35.0% |
| AAAAGATACAAGTTCAGTGC+TGG | - | chr6_3:7930037-7930056 | None:intergenic | 35.0% | |
| ATATTGTGTGGTTGCAATAG+TGG | - | chr6_3:7930083-7930102 | None:intergenic | 35.0% | |
| GAAAATGGAAAAGTGAAGGA+AGG | - | chr6_3:7930146-7930165 | None:intergenic | 35.0% | |
| CATCTCAAGAAGTTCATTCT+TGG | - | chr6_3:7930299-7930318 | None:intergenic | 35.0% | |
| TGCTTTATGTAATGCAGATG+CGG | + | chr6_3:7930344-7930363 | Msa0936960:intron | 35.0% | |
| !! | GAGGTTTGGTACATGATTTT+TGG | + | chr6_3:7930407-7930426 | Msa0936960:intron | 35.0% |
| !! | TACATGATTTTTGGATGGCT+TGG | + | chr6_3:7930416-7930435 | Msa0936960:intron | 35.0% |
| !! | GTCCTTCCTATTGATTTGTT+GGG | + | chr6_3:7930449-7930468 | Msa0936960:intron | 35.0% |
| GAAAGACCCAACAAATCAAT+AGG | - | chr6_3:7930458-7930477 | None:intergenic | 35.0% | |
| ATTCCTAAAAAACTAGTGCC+AGG | - | chr6_3:7930640-7930659 | None:intergenic | 35.0% | |
| ! | ACTCATAATGGAAACAAGGA+TGG | - | chr6_3:7930671-7930690 | None:intergenic | 35.0% |
| ! | ATCCTTGTTTCCATTATGAG+TGG | + | chr6_3:7930670-7930689 | Msa0936960:intron | 35.0% |
| ! | TCCTTGTTTCCATTATGAGT+GGG | + | chr6_3:7930671-7930690 | Msa0936960:intron | 35.0% |
| !!! | CTCTTTTCATTGGTGTTAGT+TGG | + | chr6_3:7930931-7930950 | Msa0936960:intron | 35.0% |
| !! | TTGGTTAATGCAGAGTATTG+AGG | - | chr6_3:7931678-7931697 | None:intergenic | 35.0% |
| ! | GTGGAAAAGTATGTAAGAGA+AGG | + | chr6_3:7931902-7931921 | Msa0936960:CDS | 35.0% |
| TGGTAACTGAATTTGATCAG+GGG | - | chr6_3:7931935-7931954 | None:intergenic | 35.0% | |
| CTTCTTCACCATCAAAACTA+TGG | - | chr6_3:7931955-7931974 | None:intergenic | 35.0% | |
| !!! | CATAGTTTTGATGGTGAAGA+AGG | + | chr6_3:7931953-7931972 | Msa0936960:CDS | 35.0% |
| ATTGGAATCAAACCAACTGA+AGG | + | chr6_3:7932125-7932144 | Msa0936960:intron | 35.0% | |
| TTATGAAAATTGGTCCGAAC+TGG | - | chr6_3:7932185-7932204 | None:intergenic | 35.0% | |
| ! | CGGACCAATTTTCATAATAC+TGG | + | chr6_3:7932188-7932207 | Msa0936960:intron | 35.0% |
| !! | GGGATACTTCTAAAACAAAG+TGG | + | chr6_3:7932254-7932273 | Msa0936960:intron | 35.0% |
| ! | CAACTAACCACCATGATTTT+AGG | - | chr6_3:7932452-7932471 | None:intergenic | 35.0% |
| TCACTACATGTTTGATGTGA+CGG | - | chr6_3:7932492-7932511 | None:intergenic | 35.0% | |
| CACATCCTAAATAGACATCA+AGG | - | chr6_3:7932612-7932631 | None:intergenic | 35.0% | |
| ATTTGCATTACAGGATTTCC+TGG | + | chr6_3:7932839-7932858 | Msa0936960:intron | 35.0% | |
| ! | TGTAGCTTACAGTTACTTTG+AGG | - | chr6_3:7932868-7932887 | None:intergenic | 35.0% |
| GTAACTGTAAGCTACATTCT+AGG | + | chr6_3:7932872-7932891 | Msa0936960:CDS | 35.0% | |
| GCATGGTTAACTAAGTTTAC+TGG | - | chr6_3:7932950-7932969 | None:intergenic | 35.0% | |
| ACTTAGTTAACCATGCCTAT+TGG | + | chr6_3:7932954-7932973 | Msa0936960:CDS | 35.0% | |
| GACAATAACCTTATTCCAAC+CGG | + | chr6_3:7933052-7933071 | Msa0936960:CDS | 35.0% | |
| ! | ACTGATGAAATTTTTCCGGT+TGG | - | chr6_3:7933070-7933089 | None:intergenic | 35.0% |
| ! | TGTGGCTTTACGAAATCATT+TGG | - | chr6_3:7933103-7933122 | None:intergenic | 35.0% |
| TTCGTAAAGCCACAAATTGT+TGG | + | chr6_3:7933109-7933128 | Msa0936960:CDS | 35.0% | |
| ATTCTTGCACCAACAATTTG+TGG | - | chr6_3:7933121-7933140 | None:intergenic | 35.0% | |
| GCACTATAAAATTGCAATCC+AGG | - | chr6_3:7933286-7933305 | None:intergenic | 35.0% | |
| GTGAAGAATGATAAGGGAAA+AGG | + | chr6_3:7933313-7933332 | Msa0936960:CDS | 35.0% | |
| AAGAATGATAAGGGAAAAGG+AGG | + | chr6_3:7933316-7933335 | Msa0936960:CDS | 35.0% | |
| AGAATGATAAGGGAAAAGGA+GGG | + | chr6_3:7933317-7933336 | Msa0936960:CDS | 35.0% | |
| ! | TGAAAAAGCATGTGGAACTT+CGG | - | chr6_3:7933479-7933498 | None:intergenic | 35.0% |
| AAAGTCAATGTGGCTGCTTA+TGG | - | chr6_3:7927840-7927859 | None:intergenic | 40.0% | |
| ACTTCGAGGGGAAAAAAGAA+AGG | - | chr6_3:7927863-7927882 | None:intergenic | 40.0% | |
| AGAGAAGTTTCAACTTCGAG+GGG | - | chr6_3:7927875-7927894 | None:intergenic | 40.0% | |
| ! | CTTCTCTTCTTAGCTGTTTC+TGG | + | chr6_3:7927981-7928000 | Msa0936960:CDS | 40.0% |
| !! | GCTGTTTCTGGATTTGTCAA+TGG | + | chr6_3:7927993-7928012 | Msa0936960:CDS | 40.0% |
| CAATGGCTCAATCCATAAGA+AGG | + | chr6_3:7928010-7928029 | Msa0936960:CDS | 40.0% | |
| ! | ACTTTGAAGGTCACTAACTG+GGG | + | chr6_3:7928080-7928099 | Msa0936960:CDS | 40.0% |
| TTAGTCCTACCTGACAAGAA+TGG | + | chr6_3:7928119-7928138 | Msa0936960:CDS | 40.0% | |
| GAAGCCACGATACTTCAAAA+TGG | + | chr6_3:7928717-7928736 | Msa0936960:intron | 40.0% | |
| !! | GATACGTATCGGAAAGTATC+AGG | - | chr6_3:7928784-7928803 | None:intergenic | 40.0% |
| ! | TGATACGTATCGGGAAGTAT+CGG | - | chr6_3:7928854-7928873 | None:intergenic | 40.0% |
| ATACTCTCCTGATACGTATC+GGG | - | chr6_3:7928863-7928882 | None:intergenic | 40.0% | |
| GATACTCTCCTGATACGTAT+CGG | - | chr6_3:7928864-7928883 | None:intergenic | 40.0% | |
| TAATTGGGAAATATCGGAGC+AGG | - | chr6_3:7928909-7928928 | None:intergenic | 40.0% | |
| AATCAAGATACGATACGGCT+GGG | - | chr6_3:7929247-7929266 | None:intergenic | 40.0% | |
| AAATCAAGATACGATACGGC+TGG | - | chr6_3:7929248-7929267 | None:intergenic | 40.0% | |
| ! | CCCCAAAGTTGGATATTTTG+TGG | - | chr6_3:7929348-7929367 | None:intergenic | 40.0% |
| TAAAATGTGCACCCCAAAGT+TGG | - | chr6_3:7929359-7929378 | None:intergenic | 40.0% | |
| !! | TCAGTTTTTAAGGGGGTTCA+TGG | - | chr6_3:7929962-7929981 | None:intergenic | 40.0% |
| ! | GGGTTCATGGTCAGTTTTTA+AGG | - | chr6_3:7929972-7929991 | None:intergenic | 40.0% |
| ATAGCACTGCACATATTGTG+TGG | - | chr6_3:7930095-7930114 | None:intergenic | 40.0% | |
| AAGGGTCAGAATGTGGTTAT+AGG | - | chr6_3:7930127-7930146 | None:intergenic | 40.0% | |
| ! | AGTCACCTTTTTGTTACCTG+TGG | + | chr6_3:7930375-7930394 | Msa0936960:intron | 40.0% |
| ! | GTCACCTTTTTGTTACCTGT+GGG | + | chr6_3:7930376-7930395 | Msa0936960:intron | 40.0% |
| ! | TCACCTTTTTGTTACCTGTG+GGG | + | chr6_3:7930377-7930396 | Msa0936960:intron | 40.0% |
| AAACCCCACAGGTAACAAAA+AGG | - | chr6_3:7930383-7930402 | None:intergenic | 40.0% | |
| !!! | TGATTTTTGGATGGCTTGGT+TGG | + | chr6_3:7930420-7930439 | Msa0936960:intron | 40.0% |
| !!! | GATTTTTGGATGGCTTGGTT+GGG | + | chr6_3:7930421-7930440 | Msa0936960:intron | 40.0% |
| !! | GGTCCTTCCTATTGATTTGT+TGG | + | chr6_3:7930448-7930467 | Msa0936960:intron | 40.0% |
| GACCCAACAAATCAATAGGA+AGG | - | chr6_3:7930454-7930473 | None:intergenic | 40.0% | |
| !! | TGATTTGTTGGGTCTTTCTG+AGG | + | chr6_3:7930460-7930479 | Msa0936960:intron | 40.0% |
| !! | GATTTGTTGGGTCTTTCTGA+GGG | + | chr6_3:7930461-7930480 | Msa0936960:intron | 40.0% |
| ! | ATTTGTTGGGTCTTTCTGAG+GGG | + | chr6_3:7930462-7930481 | Msa0936960:intron | 40.0% |
| !! | GTTTCCTAGCAGAGAGTATT+AGG | + | chr6_3:7930493-7930512 | Msa0936960:intron | 40.0% |
| TACACCTAATACTCTCTGCT+AGG | - | chr6_3:7930500-7930519 | None:intergenic | 40.0% | |
| !!! | TCTCCTGGCACTAGTTTTTT+AGG | + | chr6_3:7930634-7930653 | Msa0936960:intron | 40.0% |
| ! | ACCCACTCATAATGGAAACA+AGG | - | chr6_3:7930675-7930694 | None:intergenic | 40.0% |
| TTGTTTCCATTATGAGTGGG+TGG | + | chr6_3:7930674-7930693 | Msa0936960:intron | 40.0% | |
| GTATATGCTCTTGAGGTAGT+AGG | + | chr6_3:7930800-7930819 | Msa0936960:intron | 40.0% | |
| TTTCTATCCCGTCTTTGGAT+GGG | + | chr6_3:7930900-7930919 | Msa0936960:intron | 40.0% | |
| !! | GGGGTGTTTTCTCTTTTCAT+TGG | + | chr6_3:7930921-7930940 | Msa0936960:intron | 40.0% |
| TGAGAGTAAGCAAGCTTCAA+TGG | - | chr6_3:7931263-7931282 | None:intergenic | 40.0% | |
| GGAGCTCAGTTTACTCTAAA+TGG | + | chr6_3:7931426-7931445 | Msa0936960:CDS | 40.0% | |
| GAAGGAAACAACACTCTTCA+TGG | + | chr6_3:7931474-7931493 | Msa0936960:CDS | 40.0% | |
| AGAACATCACTGAATCCTCT+AGG | - | chr6_3:7931875-7931894 | None:intergenic | 40.0% | |
| GAGGATTCAGTGATGTTCTT+TGG | + | chr6_3:7931876-7931895 | Msa0936960:CDS | 40.0% | |
| ! | CAGTGATGTTCTTTGGAAAG+TGG | + | chr6_3:7931883-7931902 | Msa0936960:CDS | 40.0% |
| AATCAAACCAACTGAAGGAG+TGG | + | chr6_3:7932130-7932149 | Msa0936960:intron | 40.0% | |
| !! | ATATGTTTGGATTGGTGGCT+AGG | + | chr6_3:7932371-7932390 | Msa0936960:intron | 40.0% |
| GGTACATTGTTCGAGTAACA+TGG | + | chr6_3:7932582-7932601 | Msa0936960:intron | 40.0% | |
| GCTGTCCTTGATGTCTATTT+AGG | + | chr6_3:7932604-7932623 | Msa0936960:intron | 40.0% | |
| CTAAAATGTTGCCACTGTTG+TGG | - | chr6_3:7932991-7933010 | None:intergenic | 40.0% | |
| AAAGGTTGCAGCTATAGTGA+TGG | + | chr6_3:7933219-7933238 | Msa0936960:CDS | 40.0% | |
| AAGCTTAGTACTAATGCTCC+TGG | + | chr6_3:7933265-7933284 | Msa0936960:CDS | 40.0% | |
| ATCGTCACGGATCATTCCAA+AGG | - | chr6_3:7928634-7928653 | None:intergenic | 45.0% | |
| !! | GGAAAGTATCAGGCAGGTAT+CGG | - | chr6_3:7928774-7928793 | None:intergenic | 45.0% |
| GATACTTCCCGATACGTATC+AGG | + | chr6_3:7928853-7928872 | Msa0936960:intron | 45.0% | |
| GGAAATATCGGAGCAGGTAT+CGG | - | chr6_3:7928903-7928922 | None:intergenic | 45.0% | |
| !!! | AGCACTGATGGTGCTCTTTT+TGG | + | chr6_3:7929044-7929063 | Msa0936960:intron | 45.0% |
| !! | GCACTGATGGTGCTCTTTTT+GGG | + | chr6_3:7929045-7929064 | Msa0936960:intron | 45.0% |
| ATGTGCTACGAGCTTATGAC+TGG | + | chr6_3:7929135-7929154 | Msa0936960:intron | 45.0% | |
| TGTGGTGCATATGTGAAGCT+CGG | - | chr6_3:7929330-7929349 | None:intergenic | 45.0% | |
| ! | TGTGTTGATCTGACTCTCTG+TGG | + | chr6_3:7930524-7930543 | Msa0936960:intron | 45.0% |
| GACGCTGGATGTAGAACAAT+TGG | + | chr6_3:7930593-7930612 | Msa0936960:intron | 45.0% | |
| TTTCCATTATGAGTGGGTGG+TGG | + | chr6_3:7930677-7930696 | Msa0936960:intron | 45.0% | |
| TATTGGTCCCAGCAGATTGA+TGG | - | chr6_3:7930705-7930724 | None:intergenic | 45.0% | |
| CTGGGACCAATAGATTACGA+GGG | + | chr6_3:7930713-7930732 | Msa0936960:intron | 45.0% | |
| ACTCCTCCCTCGTAATCTAT+TGG | - | chr6_3:7930722-7930741 | None:intergenic | 45.0% | |
| CAACTGGAATCCATGCTCAA+AGG | - | chr6_3:7930757-7930776 | None:intergenic | 45.0% | |
| TTATTTCATCTCCCGAGAGG+TGG | + | chr6_3:7930824-7930843 | Msa0936960:intron | 45.0% | |
| TATTTCATCTCCCGAGAGGT+GGG | + | chr6_3:7930825-7930844 | Msa0936960:intron | 45.0% | |
| AAAAACAAAGCCCACCTCTC+GGG | - | chr6_3:7930838-7930857 | None:intergenic | 45.0% | |
| CAAAAACAAAGCCCACCTCT+CGG | - | chr6_3:7930839-7930858 | None:intergenic | 45.0% | |
| !!! | GAGAGGTGGGCTTTGTTTTT+GGG | + | chr6_3:7930838-7930857 | Msa0936960:intron | 45.0% |
| GTTTCTATCCCGTCTTTGGA+TGG | + | chr6_3:7930899-7930918 | Msa0936960:intron | 45.0% | |
| TTCTATCCCGTCTTTGGATG+GGG | + | chr6_3:7930901-7930920 | Msa0936960:intron | 45.0% | |
| AAAACACCCCCATCCAAAGA+CGG | - | chr6_3:7930911-7930930 | None:intergenic | 45.0% | |
| GAGTCGTGTGATAGATGTGA+TGG | - | chr6_3:7931166-7931185 | None:intergenic | 45.0% | |
| !! | TCATACTTTGGAGCAACCGT+TGG | + | chr6_3:7931381-7931400 | Msa0936960:CDS | 45.0% |
| TCTGTTAGCAACCCTACCAA+CGG | - | chr6_3:7931400-7931419 | None:intergenic | 45.0% | |
| GGTAGGGTTGCTAACAGAAT+TGG | + | chr6_3:7931402-7931421 | Msa0936960:CDS | 45.0% | |
| AGGGTTGCTAACAGAATTGG+AGG | + | chr6_3:7931405-7931424 | Msa0936960:CDS | 45.0% | |
| CTTTACTTAGGTGGACCTAG+AGG | + | chr6_3:7931857-7931876 | Msa0936960:intron | 45.0% | |
| AAAGAGACCACTCCTTCAGT+TGG | - | chr6_3:7932140-7932159 | None:intergenic | 45.0% | |
| ACTAGTTGAATCGGCCAGTT+CGG | + | chr6_3:7932168-7932187 | Msa0936960:intron | 45.0% | |
| !! | ACAGTTACTTTGAGGTCACC+AGG | - | chr6_3:7932860-7932879 | None:intergenic | 45.0% |
| AACCATGCCTATTGGAACCT+AGG | + | chr6_3:7932962-7932981 | Msa0936960:CDS | 45.0% | |
| TTCCTAGGTTCCAATAGGCA+TGG | - | chr6_3:7932967-7932986 | None:intergenic | 45.0% | |
| GTGGTTTCCTAGGTTCCAAT+AGG | - | chr6_3:7932972-7932991 | None:intergenic | 45.0% | |
| AACCTAGGAAACCACAACAG+TGG | + | chr6_3:7932977-7932996 | Msa0936960:CDS | 45.0% | |
| ACCACGTTCAGCACTTTGTT+TGG | + | chr6_3:7933351-7933370 | Msa0936960:CDS | 45.0% | |
| !! | TCCAAACAAAGTGCTGAACG+TGG | - | chr6_3:7933355-7933374 | None:intergenic | 45.0% |
| ! | AAAAGCATGTGGAACTTCGG+TGG | - | chr6_3:7933476-7933495 | None:intergenic | 45.0% |
| !! | AAAAAATAAAATTTAATCTT+CGG | - | chr6_3:7928817-7928836 | None:intergenic | 5.0% |
| GTCACGGATCATTCCAAAGG+AGG | - | chr6_3:7928631-7928650 | None:intergenic | 50.0% | |
| TATCGGTGCAGAATACGCAG+AGG | - | chr6_3:7928757-7928776 | None:intergenic | 50.0% | |
| !! | CGTATCGGAAAGTATCAGGC+AGG | - | chr6_3:7928780-7928799 | None:intergenic | 50.0% |
| TAGGGTCATGCTAACGTGCT+TGG | - | chr6_3:7929601-7929620 | None:intergenic | 50.0% | |
| GCGGAGCTACATATGTGTGA+GGG | + | chr6_3:7929877-7929896 | Msa0936960:intron | 50.0% | |
| CGGAGCTACATATGTGTGAG+GGG | + | chr6_3:7929878-7929897 | Msa0936960:intron | 50.0% | |
| GGAGCTACATATGTGTGAGG+GGG | + | chr6_3:7929879-7929898 | Msa0936960:intron | 50.0% | |
| !! | CAGTGCTGGCAGTGTTTGAT+TGG | - | chr6_3:7930023-7930042 | None:intergenic | 50.0% |
| GTGAAGGAAGGGTCAGAATG+TGG | - | chr6_3:7930134-7930153 | None:intergenic | 50.0% | |
| TGATCTGACTCTCTGTGGTG+TGG | + | chr6_3:7930529-7930548 | Msa0936960:intron | 50.0% | |
| TCTCTGTGGTGTGGTCTATC+TGG | + | chr6_3:7930538-7930557 | Msa0936960:intron | 50.0% | |
| CTGGTCTGCTCGTAATGATC+TGG | + | chr6_3:7930557-7930576 | Msa0936960:intron | 50.0% | |
| GTTCCACCACCCACTCATAA+TGG | - | chr6_3:7930683-7930702 | None:intergenic | 50.0% | |
| TGGTGGAACCATCAATCTGC+TGG | + | chr6_3:7930694-7930713 | Msa0936960:intron | 50.0% | |
| GGTGGAACCATCAATCTGCT+GGG | + | chr6_3:7930695-7930714 | Msa0936960:intron | 50.0% | |
| GCTGGGACCAATAGATTACG+AGG | + | chr6_3:7930712-7930731 | Msa0936960:intron | 50.0% | |
| GGACCAATAGATTACGAGGG+AGG | + | chr6_3:7930716-7930735 | Msa0936960:intron | 50.0% | |
| ! | TACGAGGGAGGAGTTTTGCT+TGG | + | chr6_3:7930728-7930747 | Msa0936960:intron | 50.0% |
| ! | ACGAGGGAGGAGTTTTGCTT+GGG | + | chr6_3:7930729-7930748 | Msa0936960:intron | 50.0% |
| GGCTTATTTCATCTCCCGAG+AGG | + | chr6_3:7930821-7930840 | Msa0936960:intron | 50.0% | |
| !!! | CGAGAGGTGGGCTTTGTTTT+TGG | + | chr6_3:7930837-7930856 | Msa0936960:intron | 50.0% |
| !!! | AGGTGGGCTTTGTTTTTGGG+TGG | + | chr6_3:7930841-7930860 | Msa0936960:intron | 50.0% |
| !!! | TGGGCTTTGTTTTTGGGTGG+AGG | + | chr6_3:7930844-7930863 | Msa0936960:intron | 50.0% |
| !!! | GGGCTTTGTTTTTGGGTGGA+GGG | + | chr6_3:7930845-7930864 | Msa0936960:intron | 50.0% |
| ! | GTCCCTTGCTTGCCTTTTAG+CGG | + | chr6_3:7930867-7930886 | Msa0936960:intron | 50.0% |
| ! | TCCCTTGCTTGCCTTTTAGC+GGG | + | chr6_3:7930868-7930887 | Msa0936960:intron | 50.0% |
| ACCCGCTAAAAGGCAAGCAA+GGG | - | chr6_3:7930872-7930891 | None:intergenic | 50.0% | |
| ! | GGGTGTTTCTATCCCGTCTT+TGG | + | chr6_3:7930895-7930914 | Msa0936960:intron | 50.0% |
| TCTATCCCGTCTTTGGATGG+GGG | + | chr6_3:7930902-7930921 | Msa0936960:intron | 50.0% | |
| AAACACCCCCATCCAAAGAC+GGG | - | chr6_3:7930910-7930929 | None:intergenic | 50.0% | |
| !! | ACTTTGGAGCAACCGTTGGT+AGG | + | chr6_3:7931385-7931404 | Msa0936960:CDS | 50.0% |
| !! | CTTTGGAGCAACCGTTGGTA+GGG | + | chr6_3:7931386-7931405 | Msa0936960:CDS | 50.0% |
| TGCCACTGTTGTGGTTTCCT+AGG | - | chr6_3:7932982-7933001 | None:intergenic | 50.0% | |
| ! | ACTGCGCCGATACGCTGATA+CGG | - | chr6_3:7929282-7929301 | None:intergenic | 55.0% |
| GGCGGAGCTACATATGTGTG+AGG | + | chr6_3:7929876-7929895 | Msa0936960:intron | 55.0% | |
| TTACCTGTGGGGTTTCGTCG+AGG | + | chr6_3:7930388-7930407 | Msa0936960:intron | 55.0% | |
| AAACCTCGACGAAACCCCAC+AGG | - | chr6_3:7930394-7930413 | None:intergenic | 55.0% | |
| TGTGGGGTTTCGTCGAGGTT+TGG | + | chr6_3:7930393-7930412 | Msa0936960:intron | 55.0% | |
| !! | TGGATGGCTTGGTTGGGAGT+TGG | + | chr6_3:7930427-7930446 | Msa0936960:intron | 55.0% |
| GGTGTTCTCTGCTATGACGC+TGG | + | chr6_3:7930578-7930597 | Msa0936960:intron | 55.0% | |
| TGCTTGGGTGCCTTTGAGCA+TGG | + | chr6_3:7930744-7930763 | Msa0936960:intron | 55.0% | |
| CACCCGCTAAAAGGCAAGCA+AGG | - | chr6_3:7930873-7930892 | None:intergenic | 55.0% | |
| !! | TGCTTGCCTTTTAGCGGGTG+TGG | + | chr6_3:7930873-7930892 | Msa0936960:intron | 55.0% |
| !! | GCTTGCCTTTTAGCGGGTGT+GGG | + | chr6_3:7930874-7930893 | Msa0936960:intron | 55.0% |
| !! | CTTGCCTTTTAGCGGGTGTG+GGG | + | chr6_3:7930875-7930894 | Msa0936960:intron | 55.0% |
| AACACCCCACACCCGCTAAA+AGG | - | chr6_3:7930882-7930901 | None:intergenic | 55.0% | |
| !! | ATCGGAGCAGGTATCGGTGC+AGG | - | chr6_3:7928897-7928916 | None:intergenic | 60.0% |
| AAGTCTGAACCCCCTGCTCC+AGG | + | chr6_3:7930261-7930280 | Msa0936960:intron | 60.0% | |
| AGTCTGAACCCCCTGCTCCA+GGG | + | chr6_3:7930262-7930281 | Msa0936960:intron | 60.0% | |
| TTGCCAAGACCCTGGAGCAG+GGG | - | chr6_3:7930274-7930293 | None:intergenic | 60.0% | |
| GTTGCCAAGACCCTGGAGCA+GGG | - | chr6_3:7930275-7930294 | None:intergenic | 60.0% | |
| TCTTGGCGTTGCCAAGACCC+TGG | - | chr6_3:7930282-7930301 | None:intergenic | 60.0% | |
| AACCCCCTGCTCCAGGGTCT+TGG | + | chr6_3:7930268-7930287 | Msa0936960:intron | 65.0% | |
| TGCCAAGACCCTGGAGCAGG+GGG | - | chr6_3:7930273-7930292 | None:intergenic | 65.0% | |
| CGTTGCCAAGACCCTGGAGC+AGG | - | chr6_3:7930276-7930295 | None:intergenic | 65.0% | |
| GGGGGTTCAGCTGAACCCCC+TGG | + | chr6_3:7929897-7929916 | Msa0936960:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 7927758 | 7933605 | 7927758 | ID=Msa0936960;Name=Msa0936960 |
| chr6_3 | mRNA | 7927758 | 7933605 | 7927758 | ID=Msa0936960-mRNA-1;Parent=Msa0936960;Name=Msa0936960-mRNA-1;_AED=0.08;_eAED=0.08;_QI=193|1|1|1|1|1|5|98|375 |
| chr6_3 | exon | 7927758 | 7928140 | 7927758 | ID=Msa0936960-mRNA-1:exon:2612;Parent=Msa0936960-mRNA-1 |
| chr6_3 | exon | 7928290 | 7928339 | 7928290 | ID=Msa0936960-mRNA-1:exon:2613;Parent=Msa0936960-mRNA-1 |
| chr6_3 | exon | 7931372 | 7931495 | 7931372 | ID=Msa0936960-mRNA-1:exon:2614;Parent=Msa0936960-mRNA-1 |
| chr6_3 | exon | 7931867 | 7931974 | 7931867 | ID=Msa0936960-mRNA-1:exon:2615;Parent=Msa0936960-mRNA-1 |
| chr6_3 | exon | 7932852 | 7933605 | 7932852 | ID=Msa0936960-mRNA-1:exon:2616;Parent=Msa0936960-mRNA-1 |
| chr6_3 | five_prime_UTR | 7927758 | 7927950 | 7927758 | ID=Msa0936960-mRNA-1:five_prime_utr;Parent=Msa0936960-mRNA-1 |
| chr6_3 | CDS | 7927951 | 7928140 | 7927951 | ID=Msa0936960-mRNA-1:cds;Parent=Msa0936960-mRNA-1 |
| chr6_3 | CDS | 7928290 | 7928339 | 7928290 | ID=Msa0936960-mRNA-1:cds;Parent=Msa0936960-mRNA-1 |
| chr6_3 | CDS | 7931372 | 7931495 | 7931372 | ID=Msa0936960-mRNA-1:cds;Parent=Msa0936960-mRNA-1 |
| chr6_3 | CDS | 7931867 | 7931974 | 7931867 | ID=Msa0936960-mRNA-1:cds;Parent=Msa0936960-mRNA-1 |
| chr6_3 | CDS | 7932852 | 7933507 | 7932852 | ID=Msa0936960-mRNA-1:cds;Parent=Msa0936960-mRNA-1 |
| chr6_3 | three_prime_UTR | 7933508 | 7933605 | 7933508 | ID=Msa0936960-mRNA-1:three_prime_utr;Parent=Msa0936960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
