AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0905680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0905680 MtrunA17_Chr6g0453531 78.140 430 25 5 1 419 1 372 9.67e-165 467
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0905680 AT3G29075.1 55.634 142 44 5 1 141 1 124 8.56e-34 128
Msa0905680 AT1G11440.1 56.000 50 22 0 3 52 117 166 1.24e-11 66.2

Find 210 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTATTTAGTAGGTAATTA+TGG 0.163812 6_2:+3903899 None:intergenic
GAGGAGGAGAGTGAGGGATA+TGG 0.197212 6_2:-3906257 Msa0905680:CDS
GGAGCAACATTAACCTATTA+AGG 0.208184 6_2:-3903565 Msa0905680:three_prime_UTR
CCACACTCCTGCTTATTCTT+TGG 0.217754 6_2:+3903619 None:intergenic
AAGAATGAGGAAAGTGATTA+TGG 0.218432 6_2:-3906383 Msa0905680:CDS
AAGAATGAGGAAAGTGAATA+TGG 0.238375 6_2:-3906473 Msa0905680:CDS
CATAATTACCTACTAAATAA+AGG 0.239439 6_2:-3903898 Msa0905680:three_prime_UTR
AGGAAGGAGGAAAGTGAATA+TGG 0.247562 6_2:-3906305 Msa0905680:CDS
GGGGCCCAGGAGTCTGAATA+TGG 0.261491 6_2:-3906410 Msa0905680:CDS
TATGCTCAACCTTCTGCTTA+TGG 0.272182 6_2:-3906770 Msa0905680:CDS
TTCTCCCATATTCAGACTCC+TGG 0.294396 6_2:+3906405 None:intergenic
GGGGCCCAGGAGGGTGAATA+TGG 0.303637 6_2:-3906539 Msa0905680:CDS
GGATCTGGGTATGGTGGTGG+TGG 0.312300 6_2:-3906560 Msa0905680:CDS
TCTTGAGCTTTCAGAACTAT+TGG 0.315272 6_2:-3903824 Msa0905680:three_prime_UTR
TGATATCTTCCTTTCCTGTT+TGG 0.315869 6_2:-3903861 Msa0905680:three_prime_UTR
GCATCTAATACAACCTTAAT+AGG 0.317590 6_2:+3903552 None:intergenic
AGGAAGCAAGAGGGTGAATA+TGG 0.323037 6_2:-3906581 Msa0905680:CDS
AGGAAGCAAGAATCTGGATA+TGG 0.323483 6_2:-3906344 Msa0905680:CDS
GGGAGGAAGAAGAGTGGTTA+TGG 0.325487 6_2:-3906191 Msa0905680:CDS
AGGAGGAGAGTGAGGGATAT+GGG 0.331945 6_2:-3906256 Msa0905680:CDS
AGTGAATATGGGTCTGGATA+TGG 0.338891 6_2:-3906293 Msa0905680:CDS
AGTGATTATGGGTCTGGATA+TGG 0.342180 6_2:-3906371 Msa0905680:CDS
CAAGAATCTGAAATTGGATC+TGG 0.346947 6_2:-3906614 Msa0905680:CDS
GTGGTGGTGGTGGGTATGGG+AGG 0.347122 6_2:-3906661 Msa0905680:CDS
GTATGGTGGTGGTGGGGCCC+AGG 0.347593 6_2:-3906552 Msa0905680:CDS
GGTGGAAGGAAGCAAGAATC+TGG 0.358744 6_2:-3906506 Msa0905680:CDS
TTTATTTAGTAGGTAATTAT+GGG 0.359554 6_2:+3903900 None:intergenic
AACTTTAATGTATTGCTGTC+TGG 0.361684 6_2:-3903797 Msa0905680:three_prime_UTR
AACACAACAACTCAAACATT+AGG 0.363929 6_2:+3903753 None:intergenic
TGGTGGTGGTGGGGCCCAGG+AGG 0.366945 6_2:-3906549 Msa0905680:CDS
GGTGGTCAAGAATCTGAAAT+TGG 0.368013 6_2:-3906620 Msa0905680:CDS
GAGGAAGAAGGGTATGGAGG+TGG 0.369060 6_2:-3906167 Msa0905680:CDS
ATCTGGGTATGGTGGTGGTG+GGG 0.380832 6_2:-3906558 Msa0905680:CDS
GGAGGAAGAAGAGTGGTTAT+GGG 0.383424 6_2:-3906190 Msa0905680:CDS
CTAGGTGCAGGTCTAGGTTT+AGG 0.386147 6_2:+3906707 None:intergenic
GTTTCATCGGAAGGTGGAAT+TGG 0.386796 6_2:+3906854 None:intergenic
TATGGGAGGAAACAAGGTTC+TGG 0.393274 6_2:-3906647 Msa0905680:CDS
AGTGAATATGGGTCTGGTTA+TGG 0.396855 6_2:-3906461 Msa0905680:CDS
CAAGAGGGTGAATATGGATC+TGG 0.396904 6_2:-3906575 Msa0905680:CDS
TCTGGATATGGGTCTGGTTA+TGG 0.398480 6_2:-3906332 Msa0905680:CDS
GGTGGAAGGAAGCAAGAATC+TGG 0.407062 6_2:-3906440 Msa0905680:CDS
ACACAACAACTCAAACATTA+GGG 0.410366 6_2:+3903754 None:intergenic
GGTGGGAGGAAGCAAGAATC+TGG 0.415415 6_2:-3906350 Msa0905680:CDS
CCTGAATCTGGTGGTGGTGG+TGG 0.415997 6_2:-3906674 Msa0905680:CDS
GATCTGGGTATGGTGGTGGT+GGG 0.416482 6_2:-3906559 Msa0905680:CDS
AGTGGTTATGGGGAGGAAGA+AGG 0.417130 6_2:-3906179 Msa0905680:CDS
TATGGATCTGGGTATGGTGG+TGG 0.422719 6_2:-3906563 Msa0905680:CDS
CAGGAGGGTGAATATGGATC+TGG 0.427850 6_2:-3906533 Msa0905680:CDS
GAGGAAAGTGATTATGGGTC+TGG 0.429038 6_2:-3906377 Msa0905680:CDS
GAGAGCGGTGGATCGGAGTA+TGG 0.430590 6_2:-3906218 Msa0905680:CDS
AAAGAATGAGGAGGAGAGTG+AGG 0.433066 6_2:-3906264 Msa0905680:CDS
GAGTCAACCCTTTATTTAGT+AGG 0.434761 6_2:+3903890 None:intergenic
AGCAGGAGTGTGGTGATTAT+AGG 0.435305 6_2:-3903609 Msa0905680:three_prime_UTR
ATAATTACCTACTAAATAAA+GGG 0.436075 6_2:-3903897 Msa0905680:three_prime_UTR
AGGAAGCAAGAATCTGGATA+TGG 0.441064 6_2:-3906434 Msa0905680:CDS
GGGGAGGAAGAAGGGTATGG+AGG 0.447403 6_2:-3906170 Msa0905680:CDS
GTGGTTATGGGGAGGAAGAA+GGG 0.452123 6_2:-3906178 Msa0905680:CDS
GGTGGTGGTGGGGCCCAGGA+GGG 0.455266 6_2:-3906548 Msa0905680:CDS
CTTCATAGTATAGTCCAAAC+AGG 0.456026 6_2:+3903847 None:intergenic
CAGATCCATATTCACCCTCC+TGG 0.458005 6_2:+3906534 None:intergenic
GAGGAGGAGAAGCCGAGCTA+TGG 0.460470 6_2:-3906050 Msa0905680:CDS
AGCATAGTGCATGCATTGGC+AGG 0.469125 6_2:+3903676 None:intergenic
CAAGAATCTGGATATGGGTC+TGG 0.469992 6_2:-3906338 Msa0905680:CDS
GGATATGGGTCTGGTTATGG+TGG 0.470348 6_2:-3906329 Msa0905680:CDS
GATGAGGAGAAGCCGAGCTA+TGG 0.471950 6_2:-3905915 Msa0905680:CDS
GAGGAAGAAGAGTGGTTATG+GGG 0.472853 6_2:-3906189 Msa0905680:CDS
GAGGAAAGTGAATATGGGTC+TGG 0.479208 6_2:-3906299 Msa0905680:CDS
TGAGCATAAGATTCAAATTG+AGG 0.480996 6_2:+3906785 None:intergenic
TACTTCACTCGTGGCGGAAA+CGG 0.482929 6_2:-3906959 Msa0905680:CDS
GTCTGGTTATGGTGGGAGGA+AGG 0.483074 6_2:-3906321 Msa0905680:CDS
GGTGGATCGGAGTATGGATC+GGG 0.483713 6_2:-3906212 Msa0905680:CDS
TCGTCACTCCTTCCATAGCT+AGG 0.485350 6_2:+3906122 None:intergenic
AGAATGAGGAAAGTGATTAT+GGG 0.485627 6_2:-3906382 Msa0905680:CDS
AGGAAGCAAGAATCTGGGTA+TGG 0.485885 6_2:-3906500 Msa0905680:CDS
GATGAGGAGAAGCCAAGCTA+TGG 0.490330 6_2:-3905984 Msa0905680:CDS
GATGAAACATGTTACCCATC+AGG 0.490672 6_2:-3906839 Msa0905680:CDS
GGTGAATATGGATCTGGGTA+TGG 0.490996 6_2:-3906527 Msa0905680:CDS
AGGAAACAAGGTTCTGGGTA+TGG 0.491819 6_2:-3906641 Msa0905680:CDS
GAATATGGATCTGGGTATGG+TGG 0.492676 6_2:-3906566 Msa0905680:CDS
AGGAGGAGAAGCCGAGCTAT+GGG 0.492768 6_2:-3906049 Msa0905680:CDS
GTGGAAGGAGTGAGTATGAG+AGG 0.493294 6_2:-3906148 Msa0905680:CDS
ATCTGGATATGGTGGGGCCC+AGG 0.495273 6_2:-3906423 Msa0905680:CDS
ATGGATCTGGGTATGGTGGA+AGG 0.498189 6_2:-3906520 Msa0905680:CDS
GAGGAAAGTGAATATGGGTC+TGG 0.499294 6_2:-3906467 Msa0905680:CDS
TCATGTAAAACATAAAGCTT+AGG 0.500966 6_2:-3903586 Msa0905680:three_prime_UTR
TCATCACTCCTTCCATAGCT+AGG 0.506102 6_2:+3905936 None:intergenic
TCATCACTCCTTCCATAGCT+AGG 0.506102 6_2:+3906005 None:intergenic
TATGGGGAGGAAGAAGGGTA+TGG 0.507252 6_2:-3906173 Msa0905680:CDS
CTTCCTTCCCTCATCATCAT+CGG 0.507735 6_2:+3904008 None:intergenic
TACTCAGTCCTCCCATAGCT+CGG 0.510767 6_2:+3906038 None:intergenic
GAAGAGGAGAAGCCGAGCTA+TGG 0.511059 6_2:-3906101 Msa0905680:CDS
ATGAGGAGAAGCCGAGCTAT+GGG 0.513016 6_2:-3905914 Msa0905680:CDS
TTGTATTAGATGCACTTTGA+GGG 0.513403 6_2:-3903542 Msa0905680:three_prime_UTR
GAATATGGATCTGGGTATGG+TGG 0.514465 6_2:-3906524 Msa0905680:CDS
TCAGTAGTCCTCCCATAGCT+TGG 0.514716 6_2:+3905972 None:intergenic
ATGTTTGAATTTGATTCACC+TGG 0.521277 6_2:-3903709 Msa0905680:three_prime_UTR
TCTCCCATATTCAGACTCCT+GGG 0.524313 6_2:+3906406 None:intergenic
CATCCTGAATCTGGTGGTGG+TGG 0.525129 6_2:-3906677 Msa0905680:CDS
AAGAATGAGGAGGAGAGTGA+GGG 0.527788 6_2:-3906263 Msa0905680:CDS
GGTGAATATGGATCTGGGTA+TGG 0.528384 6_2:-3906569 Msa0905680:CDS
GTTGTATTAGATGCACTTTG+AGG 0.528494 6_2:-3903543 Msa0905680:three_prime_UTR
ATGGGAGGAAACAAGGTTCT+GGG 0.533554 6_2:-3906646 Msa0905680:CDS
ACCACGCAGGGAGGAGATGA+AGG 0.533784 6_2:-3904033 Msa0905680:intron
ATGGGTCTGGTTATGGTGGA+AGG 0.536064 6_2:-3906454 Msa0905680:CDS
AAACCACTAGGTGCAGGTCT+AGG 0.539896 6_2:+3906701 None:intergenic
AGAATGAGGAAAGTGAATAT+GGG 0.544489 6_2:-3906472 Msa0905680:CDS
TATGAGAGGAAGCCTAGCTA+TGG 0.544851 6_2:-3906134 Msa0905680:CDS
GGAAGCAAGAATCTGGATAT+GGG 0.545271 6_2:-3906343 Msa0905680:CDS
CGGTGGATCGGAGTATGGAT+CGG 0.546373 6_2:-3906213 Msa0905680:CDS
TATCCACCACCGTATGGTGT+TGG 0.548698 6_2:+3906902 None:intergenic
AATAAGCATAGTGCATGCAT+TGG 0.549454 6_2:+3903672 None:intergenic
TGAGTATGAGAGCGGTGGAT+CGG 0.550004 6_2:-3906225 Msa0905680:CDS
TGGTTATGGTGGGAGGAAGG+AGG 0.551400 6_2:-3906318 Msa0905680:CDS
ATGAGGAGAAGCCAAGCTAT+GGG 0.551651 6_2:-3905983 Msa0905680:CDS
TATGGGAGGAAAACTAGCTA+TGG 0.553310 6_2:-3905897 Msa0905680:CDS
ATGGGTCTGGTTATGGTGGG+AGG 0.553742 6_2:-3906325 Msa0905680:CDS
TTTCATCCTGAATCTGGTGG+TGG 0.554661 6_2:-3906680 Msa0905680:CDS
GAATATGGGTCTGGTTATGG+TGG 0.555028 6_2:-3906458 Msa0905680:CDS
AAATTGGATCTGGGTATGGT+GGG 0.556092 6_2:-3906604 Msa0905680:CDS
GAATATGGGTCTGGATATGG+TGG 0.556483 6_2:-3906290 Msa0905680:CDS
TTGGATCTGGGTATGGTGGG+AGG 0.557126 6_2:-3906601 Msa0905680:CDS
GGATGAAAACCACTAGGTGC+AGG 0.558809 6_2:+3906695 None:intergenic
GAATTGGTCTACCGTAGGTA+AGG 0.559097 6_2:+3906870 None:intergenic
GGTGGGTATGGGAGGAAACA+AGG 0.560905 6_2:-3906653 Msa0905680:CDS
GATTATGGGTCTGGATATGG+TGG 0.561628 6_2:-3906368 Msa0905680:CDS
AAGAAGGGTATGGAGGTGGA+AGG 0.563197 6_2:-3906163 Msa0905680:CDS
TGAAGGCTCCGATGATGATG+AGG 0.563468 6_2:-3904016 Msa0905680:CDS
GGGCCCAGGAGTCTGAATAT+GGG 0.564705 6_2:-3906409 Msa0905680:CDS
CTATGGAAGGAGTGATGATG+AGG 0.564747 6_2:-3905880 Msa0905680:CDS
CTATGGAAGGAGTGATGATG+AGG 0.564747 6_2:-3905931 Msa0905680:CDS
CTATGGAAGGAGTGATGATG+AGG 0.564747 6_2:-3906000 Msa0905680:CDS
CGCCTCTCATAACCATAGCT+CGG 0.566140 6_2:+3905852 None:intergenic
TGAATATGGGAGAAAGAATG+AGG 0.566293 6_2:-3906396 Msa0905680:CDS
ATACATTCCAAAGAATAAGC+AGG 0.567966 6_2:-3903626 Msa0905680:three_prime_UTR
TATGGTAGGAAAACTAGCTA+TGG 0.569810 6_2:-3906083 Msa0905680:CDS
AAGCAAGAATCTGGATATGG+TGG 0.569821 6_2:-3906431 Msa0905680:CDS
GAAATTGGATCTGGGTATGG+TGG 0.570260 6_2:-3906605 Msa0905680:CDS
AAGAATCTGAAATTGGATCT+GGG 0.570455 6_2:-3906613 Msa0905680:CDS
TATGAGAGGAAACCTAGCTA+TGG 0.572094 6_2:-3906017 Msa0905680:CDS
AGATCCATATTCACCCTCCT+GGG 0.572216 6_2:+3906535 None:intergenic
CGTCATCATAACTCTTGCGA+TGG 0.572590 6_2:+3903965 None:intergenic
TGGGTATGGGAGAAAGAATG+AGG 0.575285 6_2:-3906486 Msa0905680:CDS
GGGTAACATGTTTCATCGGA+AGG 0.578559 6_2:+3906845 None:intergenic
GATGAGGAGAAACCGAGCTA+TGG 0.578916 6_2:-3905864 Msa0905680:CDS
GAAGAAGAGTGGTTATGGGG+AGG 0.579031 6_2:-3906186 Msa0905680:CDS
TACGAGAGGAAACCTAGCTA+TGG 0.580456 6_2:-3905948 Msa0905680:CDS
AGCAAGAATCTGGATATGGT+GGG 0.581183 6_2:-3906430 Msa0905680:CDS
GATATGGGTCTGGTTATGGT+GGG 0.581538 6_2:-3906328 Msa0905680:CDS
AGGAGGGTGAATATGGATCT+GGG 0.581883 6_2:-3906532 Msa0905680:CDS
AAGAGGGTGAATATGGATCT+GGG 0.581883 6_2:-3906574 Msa0905680:CDS
GGAAGCAAGAATCTGGGTAT+GGG 0.585008 6_2:-3906499 Msa0905680:CDS
TCTGAAATTGGATCTGGGTA+TGG 0.586258 6_2:-3906608 Msa0905680:CDS
TATGGTGGGAGGAAGCAAGA+GGG 0.587340 6_2:-3906590 Msa0905680:CDS
GATCCAACACCATACGGTGG+TGG 0.587938 6_2:-3906905 Msa0905680:CDS
AGGAAGAATGAGTATGAGAG+CGG 0.588503 6_2:-3906233 Msa0905680:CDS
GGAAGGAGGAAAGTGAATAT+GGG 0.594445 6_2:-3906304 Msa0905680:CDS
TAGTATAGTCCAAACAGGAA+AGG 0.597140 6_2:+3903852 None:intergenic
CTATGGAAGGAGTGACGAAG+AGG 0.598552 6_2:-3906117 Msa0905680:CDS
AGGAGAAGCCGAGCTATGGT+AGG 0.599437 6_2:-3906097 Msa0905680:CDS
TACGACATTCACCTTACCTA+CGG 0.602527 6_2:-3906881 Msa0905680:CDS
TCTTGCGATGGTGACTCTTG+TGG 0.602967 6_2:+3903977 None:intergenic
ATGGGAGGACTGAGTATGAG+AGG 0.603391 6_2:-3906031 Msa0905680:CDS
ATGTCGTATCCACCACCGTA+TGG 0.603594 6_2:+3906896 None:intergenic
TGATGGGTAACATGTTTCAT+CGG 0.604030 6_2:+3906841 None:intergenic
GTGGAAGGAAGCAAGAATCT+GGG 0.605300 6_2:-3906505 Msa0905680:CDS
TGTTACACTATTTCTCTCTG+TGG 0.606396 6_2:-3903734 Msa0905680:three_prime_UTR
GGAGGAAAACTAGCTATGGA+AGG 0.608209 6_2:-3905893 Msa0905680:CDS
GAATACGATCCAACACCATA+CGG 0.609449 6_2:-3906911 Msa0905680:CDS
AGAGGAAGCCTAGCTATGGA+AGG 0.611158 6_2:-3906130 Msa0905680:CDS
TTGGCAGGCAATATCATACC+AGG 0.612716 6_2:+3903691 None:intergenic
GAAGGCTCCGATGATGATGA+GGG 0.612946 6_2:-3904015 Msa0905680:CDS
AGGAGAGTGAGGGATATGGG+AGG 0.616523 6_2:-3906253 Msa0905680:CDS
AAACAAGGTTCTGGGTATGG+TGG 0.617239 6_2:-3906638 Msa0905680:CDS
GTATGGTGGGAGGAAGCAAG+AGG 0.619865 6_2:-3906591 Msa0905680:CDS
AGAGGAAACCTAGCTATGGA+AGG 0.622082 6_2:-3906013 Msa0905680:CDS
ATATGGTGGGAGAAAGAATG+AGG 0.623564 6_2:-3906276 Msa0905680:CDS
GCAAGAATCTGGATATGGTG+GGG 0.626872 6_2:-3906429 Msa0905680:CDS
CTATGGACGGAGTGATGAGG+AGG 0.628211 6_2:-3906066 Msa0905680:CDS
AAGAATGAGTATGAGAGCGG+TGG 0.628776 6_2:-3906230 Msa0905680:CDS
TGGTGGGAGAAAGAATGAGG+AGG 0.629744 6_2:-3906273 Msa0905680:CDS
GAGGCGTGGTGATGATGATG+AGG 0.630193 6_2:-3905835 Msa0905680:CDS
TAACATGTTTCATCGGAAGG+TGG 0.634933 6_2:+3906848 None:intergenic
CATTGTTTGATGAACCTGAT+GGG 0.635614 6_2:+3906825 None:intergenic
GCTCCGATGATGATGAGGGA+AGG 0.635788 6_2:-3904011 Msa0905680:CDS
GCTTCATCACCATAAGCAGA+AGG 0.635872 6_2:+3906761 None:intergenic
AGAGGAAACCTAGCTATGGA+AGG 0.637235 6_2:-3905944 Msa0905680:CDS
AACCGAGCTATGGTTATGAG+AGG 0.637534 6_2:-3905854 Msa0905680:CDS
GGTGATGATGATGAGGGATA+CGG 0.638537 6_2:-3905828 Msa0905680:CDS
ATGTCATACTTCACTCGTGG+CGG 0.640823 6_2:-3906965 Msa0905680:CDS
AGGTGGAATTGGTCTACCGT+AGG 0.641004 6_2:+3906865 None:intergenic
GTAGGAAAACTAGCTATGGA+CGG 0.641728 6_2:-3906079 Msa0905680:CDS
GGATCGGGGAGGAAGAAGAG+TGG 0.646806 6_2:-3906197 Msa0905680:CDS
ATGGGTCTGGATATGGTGGG+AGG 0.652775 6_2:-3906364 Msa0905680:CDS
CCAAAGAATAAGCAGGAGTG+TGG 0.653601 6_2:-3903619 Msa0905680:three_prime_UTR
TAGCTATGGACGGAGTGATG+AGG 0.653663 6_2:-3906069 Msa0905680:CDS
AGGCGTGGTGATGATGATGA+GGG 0.654337 6_2:-3905834 Msa0905680:CDS
AGGAGAAGCCGAGCTATGGG+AGG 0.655067 6_2:-3906046 Msa0905680:CDS
AGGAGAAGCCGAGCTATGGG+AGG 0.661652 6_2:-3905911 Msa0905680:CDS
GATTCAGGATGAAAACCACT+AGG 0.668884 6_2:+3906689 None:intergenic
ATTATGGGTCTGGATATGGT+GGG 0.670541 6_2:-3906367 Msa0905680:CDS
TCATTGTTTGATGAACCTGA+TGG 0.670564 6_2:+3906824 None:intergenic
AGGAGAAGCCAAGCTATGGG+AGG 0.672917 6_2:-3905980 Msa0905680:CDS
AATATGGGTCTGGATATGGT+GGG 0.674140 6_2:-3906289 Msa0905680:CDS
AAAATGTCATACTTCACTCG+TGG 0.675477 6_2:-3906968 Msa0905680:CDS
AGCTATGGTTATGAGAGGCG+TGG 0.681922 6_2:-3905849 Msa0905680:CDS
GGAGGACTACTGAGTACGAG+AGG 0.692772 6_2:-3905962 Msa0905680:CDS
AAACCTAGACCTGCACCTAG+TGG 0.695525 6_2:-3906704 Msa0905680:CDS
TACGATCCAACACCATACGG+TGG 0.709648 6_2:-3906908 Msa0905680:CDS
GTGGATCGGAGTATGGATCG+GGG 0.740645 6_2:-3906211 Msa0905680:CDS
GATCGGAGTATGGATCGGGG+AGG 0.756469 6_2:-3906208 Msa0905680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTAGTAGGTAATTAT+GGG + chr6_2:3906596-3906615 None:intergenic 15.0%
!! ATAATTACCTACTAAATAAA+GGG - chr6_2:3906596-3906615 Msa0905680:CDS 15.0%
!! TAATCTTACTTATGGATTTA+TGG - chr6_2:3904706-3904725 Msa0905680:intron 20.0%
!! CTTCAAATTATTGAGAAAAA+TGG - chr6_2:3904950-3904969 Msa0905680:intron 20.0%
!!! TACAGTTGCTATTAAAAAAA+GGG + chr6_2:3905391-3905410 None:intergenic 20.0%
!! ATGCCATGTATTATATATTA+TGG + chr6_2:3905669-3905688 None:intergenic 20.0%
!! GTAATTGTAAATATTTGAGT+TGG - chr6_2:3906414-3906433 Msa0905680:CDS 20.0%
!!! CTTTATTTAGTAGGTAATTA+TGG + chr6_2:3906597-3906616 None:intergenic 20.0%
!! CATAATTACCTACTAAATAA+AGG - chr6_2:3906595-3906614 Msa0905680:CDS 20.0%
! TATGTGAGTAATCTTACTTA+TGG - chr6_2:3904698-3904717 Msa0905680:intron 25.0%
! TGAATTAATAATCGCCAAAT+TGG - chr6_2:3904923-3904942 Msa0905680:intron 25.0%
!! TAATTTGAAGTGTACCAATT+TGG + chr6_2:3904940-3904959 None:intergenic 25.0%
! TGAATTATCATCATCATAGT+GGG + chr6_2:3905012-3905031 None:intergenic 25.0%
!! CAATTGTTGATAGAAATATG+TGG - chr6_2:3905149-3905168 Msa0905680:intron 25.0%
!! CTACAGTTGCTATTAAAAAA+AGG + chr6_2:3905392-3905411 None:intergenic 25.0%
! AGTTCATTGTTATCAATTGA+GGG + chr6_2:3905456-3905475 None:intergenic 25.0%
! AAGTTCATTGTTATCAATTG+AGG + chr6_2:3905457-3905476 None:intergenic 25.0%
!! CTTTTATGTGTATGATACTA+TGG - chr6_2:3905528-3905547 Msa0905680:intron 25.0%
! TATTTAAGCTGTGTAGTAAA+TGG + chr6_2:3905621-3905640 None:intergenic 25.0%
! CTGCCATAATATATAATACA+TGG - chr6_2:3905663-3905682 Msa0905680:intron 25.0%
! TAAAGAAATAATTCAGCTAG+CGG + chr6_2:3905751-3905770 None:intergenic 25.0%
! GATAAATCTGTGAAATTATC+AGG - chr6_2:3905833-3905852 Msa0905680:CDS 25.0%
! AGAGAAGAAAAACAAGTTAA+TGG - chr6_2:3905977-3905996 Msa0905680:CDS 25.0%
! GAGAAGAAAAACAAGTTAAT+GGG - chr6_2:3905978-3905997 Msa0905680:CDS 25.0%
! CAAAAAGTGATAGAATGAAA+GGG + chr6_2:3906027-3906046 None:intergenic 25.0%
! ACAAAAAGTGATAGAATGAA+AGG + chr6_2:3906028-3906047 None:intergenic 25.0%
!! CAAGTCAAAACAATTTTGAA+AGG + chr6_2:3906140-3906159 None:intergenic 25.0%
!!! TCAAAATTGTTTTGACTTGT+TGG - chr6_2:3906141-3906160 Msa0905680:CDS 25.0%
!!! TCAGCATTTTTAAAAAGCAA+TGG - chr6_2:3906167-3906186 Msa0905680:CDS 25.0%
! AAAAACTACTACATGTACTT+GGG + chr6_2:3906212-3906231 None:intergenic 25.0%
!! GCAATGTAAAATGTTTTACT+CGG - chr6_2:3906392-3906411 Msa0905680:CDS 25.0%
! TCATGTAAAACATAAAGCTT+AGG - chr6_2:3906907-3906926 Msa0905680:CDS 25.0%
TGAGCATAAGATTCAAATTG+AGG + chr6_2:3903711-3903730 None:intergenic 30.0%
! AAGAATCTGAAATTGGATCT+GGG - chr6_2:3903880-3903899 Msa0905680:three_prime_UTR 30.0%
AAGAATGAGGAAAGTGAATA+TGG - chr6_2:3904020-3904039 Msa0905680:CDS 30.0%
AGAATGAGGAAAGTGAATAT+GGG - chr6_2:3904021-3904040 Msa0905680:CDS 30.0%
AAGAATGAGGAAAGTGATTA+TGG - chr6_2:3904110-3904129 Msa0905680:intron 30.0%
AGAATGAGGAAAGTGATTAT+GGG - chr6_2:3904111-3904130 Msa0905680:intron 30.0%
! TGTGTGTACACTTATAGTTT+TGG - chr6_2:3904804-3904823 Msa0905680:intron 30.0%
GAATTATCATCATCATAGTG+GGG + chr6_2:3905011-3905030 None:intergenic 30.0%
GTGAATTATCATCATCATAG+TGG + chr6_2:3905013-3905032 None:intergenic 30.0%
ATTGTTACTACAACCAAAGA+GGG + chr6_2:3905188-3905207 None:intergenic 30.0%
AATTGTTACTACAACCAAAG+AGG + chr6_2:3905189-3905208 None:intergenic 30.0%
!! TTTCCCTATTTTGAGCTTTT+GGG - chr6_2:3905569-3905588 Msa0905680:intron 30.0%
AAAGAAATAATTCAGCTAGC+GGG + chr6_2:3905750-3905769 None:intergenic 30.0%
ACAGATTTATCAGAGTAAGT+TGG + chr6_2:3905824-3905843 None:intergenic 30.0%
TGTGAAATTATCAGGATGAT+AGG - chr6_2:3905841-3905860 Msa0905680:CDS 30.0%
! TTTTTCTTCTCTGCAAATTG+GGG + chr6_2:3905969-3905988 None:intergenic 30.0%
! GTTTTTCTTCTCTGCAAATT+GGG + chr6_2:3905970-3905989 None:intergenic 30.0%
! TGTTTTTCTTCTCTGCAAAT+TGG + chr6_2:3905971-3905990 None:intergenic 30.0%
! ACTTTTTGTCAATACAAGCA+TGG - chr6_2:3906039-3906058 Msa0905680:CDS 30.0%
CAAAAACTACTACATGTACT+TGG + chr6_2:3906213-3906232 None:intergenic 30.0%
!!! GTAGTTTTTGAAGCGATATA+TGG - chr6_2:3906223-3906242 Msa0905680:CDS 30.0%
TCACTACATTTAATTGTGCA+AGG - chr6_2:3906275-3906294 Msa0905680:CDS 30.0%
AACTTTAATGTATTGCTGTC+TGG - chr6_2:3906696-3906715 Msa0905680:CDS 30.0%
ACACAACAACTCAAACATTA+GGG + chr6_2:3906742-3906761 None:intergenic 30.0%
AACACAACAACTCAAACATT+AGG + chr6_2:3906743-3906762 None:intergenic 30.0%
ATGTTTGAATTTGATTCACC+TGG - chr6_2:3906784-3906803 Msa0905680:CDS 30.0%
ATACATTCCAAAGAATAAGC+AGG - chr6_2:3906867-3906886 Msa0905680:CDS 30.0%
GCATCTAATACAACCTTAAT+AGG + chr6_2:3906944-3906963 None:intergenic 30.0%
TTGTATTAGATGCACTTTGA+GGG - chr6_2:3906951-3906970 Msa0905680:CDS 30.0%
! TGATGGGTAACATGTTTCAT+CGG + chr6_2:3903655-3903674 None:intergenic 35.0%
CATTGTTTGATGAACCTGAT+GGG + chr6_2:3903671-3903690 None:intergenic 35.0%
TCATTGTTTGATGAACCTGA+TGG + chr6_2:3903672-3903691 None:intergenic 35.0%
! CAAGAATCTGAAATTGGATC+TGG - chr6_2:3903879-3903898 Msa0905680:three_prime_UTR 35.0%
TGAATATGGGAGAAAGAATG+AGG - chr6_2:3904097-3904116 Msa0905680:intron 35.0%
TATGGTAGGAAAACTAGCTA+TGG - chr6_2:3904410-3904429 Msa0905680:intron 35.0%
!!! ACACTTATAGTTTTGGCCTT+TGG - chr6_2:3904811-3904830 Msa0905680:intron 35.0%
!!! TTATAGTTTTGGCCTTTGGT+AGG - chr6_2:3904815-3904834 Msa0905680:intron 35.0%
AGATTGTAAGATCCTACCAA+AGG + chr6_2:3904830-3904849 None:intergenic 35.0%
AACTATATCCTACCTAGGAT+TGG + chr6_2:3904889-3904908 None:intergenic 35.0%
AGTCAAACTATATCCTACCT+AGG + chr6_2:3904894-3904913 None:intergenic 35.0%
GGTACACTATTAGGATTTAG+GGG + chr6_2:3904990-3905009 None:intergenic 35.0%
GGGTACACTATTAGGATTTA+GGG + chr6_2:3904991-3905010 None:intergenic 35.0%
GTGTAATTGCGTGAACTAAT+TGG - chr6_2:3905052-3905071 Msa0905680:intron 35.0%
CTGCATAGCGTTTAAGAATT+AGG + chr6_2:3905327-3905346 None:intergenic 35.0%
GACAATAGTCACATTTGTAG+TGG - chr6_2:3905346-3905365 Msa0905680:intron 35.0%
!! GTTTCCCTATTTTGAGCTTT+TGG - chr6_2:3905568-3905587 Msa0905680:intron 35.0%
AGACCCAAAAGCTCAAAATA+GGG + chr6_2:3905575-3905594 None:intergenic 35.0%
GTGTAGTAAATGGCAGATAA+CGG + chr6_2:3905611-3905630 None:intergenic 35.0%
! TTTTCTTCTCTGCAAATTGG+GGG + chr6_2:3905968-3905987 None:intergenic 35.0%
AACAAGTTAATGGGATGCTA+TGG - chr6_2:3905987-3906006 Msa0905680:CDS 35.0%
GAATGAAAGGGAATGGTAAT+AGG + chr6_2:3906015-3906034 None:intergenic 35.0%
AGTGATAGAATGAAAGGGAA+TGG + chr6_2:3906022-3906041 None:intergenic 35.0%
! TTCCTTCAGTGTGCATTTTA+TGG - chr6_2:3906360-3906379 Msa0905680:CDS 35.0%
ATCCATAAAATGCACACTGA+AGG + chr6_2:3906365-3906384 None:intergenic 35.0%
! GAGTCAACCCTTTATTTAGT+AGG + chr6_2:3906606-3906625 None:intergenic 35.0%
TGATATCTTCCTTTCCTGTT+TGG - chr6_2:3906632-3906651 Msa0905680:CDS 35.0%
TAGTATAGTCCAAACAGGAA+AGG + chr6_2:3906644-3906663 None:intergenic 35.0%
CTTCATAGTATAGTCCAAAC+AGG + chr6_2:3906649-3906668 None:intergenic 35.0%
TCTTGAGCTTTCAGAACTAT+TGG - chr6_2:3906669-3906688 Msa0905680:CDS 35.0%
! TGTTACACTATTTCTCTCTG+TGG - chr6_2:3906759-3906778 Msa0905680:CDS 35.0%
AATAAGCATAGTGCATGCAT+TGG + chr6_2:3906824-3906843 None:intergenic 35.0%
GGAGCAACATTAACCTATTA+AGG - chr6_2:3906928-3906947 Msa0905680:CDS 35.0%
GTTGTATTAGATGCACTTTG+AGG - chr6_2:3906950-3906969 Msa0905680:CDS 35.0%
GAATACGATCCAACACCATA+CGG - chr6_2:3903582-3903601 Msa0905680:three_prime_UTR 40.0%
TACGACATTCACCTTACCTA+CGG - chr6_2:3903612-3903631 Msa0905680:three_prime_UTR 40.0%
TAACATGTTTCATCGGAAGG+TGG + chr6_2:3903648-3903667 None:intergenic 40.0%
GATGAAACATGTTACCCATC+AGG - chr6_2:3903654-3903673 Msa0905680:three_prime_UTR 40.0%
TATGCTCAACCTTCTGCTTA+TGG - chr6_2:3903723-3903742 Msa0905680:three_prime_UTR 40.0%
GATTCAGGATGAAAACCACT+AGG + chr6_2:3903807-3903826 None:intergenic 40.0%
! AGTGGTTTTCATCCTGAATC+TGG - chr6_2:3903807-3903826 Msa0905680:three_prime_UTR 40.0%
! GGTGGTCAAGAATCTGAAAT+TGG - chr6_2:3903873-3903892 Msa0905680:three_prime_UTR 40.0%
! TCTGAAATTGGATCTGGGTA+TGG - chr6_2:3903885-3903904 Msa0905680:three_prime_UTR 40.0%
AAATTGGATCTGGGTATGGT+GGG - chr6_2:3903889-3903908 Msa0905680:three_prime_UTR 40.0%
AAGAGGGTGAATATGGATCT+GGG - chr6_2:3903919-3903938 Msa0905680:three_prime_UTR 40.0%
AGTGAATATGGGTCTGGTTA+TGG - chr6_2:3904032-3904051 Msa0905680:intron 40.0%
AGGAAGCAAGAATCTGGATA+TGG - chr6_2:3904059-3904078 Msa0905680:intron 40.0%
AAGCAAGAATCTGGATATGG+TGG - chr6_2:3904062-3904081 Msa0905680:intron 40.0%
AGCAAGAATCTGGATATGGT+GGG - chr6_2:3904063-3904082 Msa0905680:intron 40.0%
AGTGATTATGGGTCTGGATA+TGG - chr6_2:3904122-3904141 Msa0905680:intron 40.0%
ATTATGGGTCTGGATATGGT+GGG - chr6_2:3904126-3904145 Msa0905680:intron 40.0%
AGGAAGCAAGAATCTGGATA+TGG - chr6_2:3904059-3904078 Msa0905680:intron 40.0%
GGAAGCAAGAATCTGGATAT+GGG - chr6_2:3904060-3904079 Msa0905680:intron 40.0%
AGGAAGGAGGAAAGTGAATA+TGG - chr6_2:3904188-3904207 Msa0905680:intron 40.0%
GGAAGGAGGAAAGTGAATAT+GGG - chr6_2:3904189-3904208 Msa0905680:intron 40.0%
AGTGAATATGGGTCTGGATA+TGG - chr6_2:3904200-3904219 Msa0905680:intron 40.0%
AATATGGGTCTGGATATGGT+GGG - chr6_2:3904204-3904223 Msa0905680:intron 40.0%
! ATATGGTGGGAGAAAGAATG+AGG - chr6_2:3904217-3904236 Msa0905680:intron 40.0%
AGGAAGAATGAGTATGAGAG+CGG - chr6_2:3904260-3904279 Msa0905680:intron 40.0%
!! CTAGTTTTCCTACCATAGCT+CGG + chr6_2:3904407-3904426 None:intergenic 40.0%
GTAGGAAAACTAGCTATGGA+CGG - chr6_2:3904414-3904433 Msa0905680:intron 40.0%
TATGAGAGGAAACCTAGCTA+TGG - chr6_2:3904476-3904495 Msa0905680:intron 40.0%
TATGGGAGGAAAACTAGCTA+TGG - chr6_2:3904596-3904615 Msa0905680:intron 40.0%
TATCCTACCTAGGATTGGAA+GGG + chr6_2:3904884-3904903 None:intergenic 40.0%
ATATCCTACCTAGGATTGGA+AGG + chr6_2:3904885-3904904 None:intergenic 40.0%
TATTAGGATTTAGGGGCAAG+GGG + chr6_2:3904983-3905002 None:intergenic 40.0%
CTATTAGGATTTAGGGGCAA+GGG + chr6_2:3904984-3905003 None:intergenic 40.0%
ACTATTAGGATTTAGGGGCA+AGG + chr6_2:3904985-3905004 None:intergenic 40.0%
GGGGTACACTATTAGGATTT+AGG + chr6_2:3904992-3905011 None:intergenic 40.0%
! TCATAGTGGGGTACACTATT+AGG + chr6_2:3904999-3905018 None:intergenic 40.0%
! AGTTTTCCTTGTTCCCTCTT+TGG - chr6_2:3905172-3905191 Msa0905680:intron 40.0%
GCGTTTAAGAATTAGGCACT+AGG + chr6_2:3905320-3905339 None:intergenic 40.0%
GAGACCCAAAAGCTCAAAAT+AGG + chr6_2:3905576-3905595 None:intergenic 40.0%
!! ATAATTCAGCTAGCGGGTTA+TGG + chr6_2:3905744-3905763 None:intergenic 40.0%
AAAGTCAGACTAGTGCAGAT+TGG + chr6_2:3905926-3905945 None:intergenic 40.0%
TCAATACAAGCATGGCCTTT+AGG - chr6_2:3906047-3906066 Msa0905680:CDS 40.0%
ACTTGGGACTTTCATGTATG+AGG + chr6_2:3906196-3906215 None:intergenic 40.0%
ATGCACACTGAAGGAATGTT+AGG + chr6_2:3906356-3906375 None:intergenic 40.0%
ATGTCATACTTCACTCGTGG+CGG - chr6_2:3903528-3903547 Msa0905680:three_prime_UTR 45.0%
! GAATTGGTCTACCGTAGGTA+AGG + chr6_2:3903626-3903645 None:intergenic 45.0%
GTTTCATCGGAAGGTGGAAT+TGG + chr6_2:3903642-3903661 None:intergenic 45.0%
GGGTAACATGTTTCATCGGA+AGG + chr6_2:3903651-3903670 None:intergenic 45.0%
GCTTCATCACCATAAGCAGA+AGG + chr6_2:3903735-3903754 None:intergenic 45.0%
! GGTTTTCATCCTGAATCTGG+TGG - chr6_2:3903810-3903829 Msa0905680:three_prime_UTR 45.0%
TTTCATCCTGAATCTGGTGG+TGG - chr6_2:3903813-3903832 Msa0905680:three_prime_UTR 45.0%
TATGGGAGGAAACAAGGTTC+TGG - chr6_2:3903846-3903865 Msa0905680:three_prime_UTR 45.0%
ATGGGAGGAAACAAGGTTCT+GGG - chr6_2:3903847-3903866 Msa0905680:three_prime_UTR 45.0%
!! AGGAAACAAGGTTCTGGGTA+TGG - chr6_2:3903852-3903871 Msa0905680:three_prime_UTR 45.0%
!! AAACAAGGTTCTGGGTATGG+TGG - chr6_2:3903855-3903874 Msa0905680:three_prime_UTR 45.0%
GAAATTGGATCTGGGTATGG+TGG - chr6_2:3903888-3903907 Msa0905680:three_prime_UTR 45.0%
AGGAAGCAAGAGGGTGAATA+TGG - chr6_2:3903912-3903931 Msa0905680:three_prime_UTR 45.0%
CAAGAGGGTGAATATGGATC+TGG - chr6_2:3903918-3903937 Msa0905680:three_prime_UTR 45.0%
GGTGAATATGGATCTGGGTA+TGG - chr6_2:3903924-3903943 Msa0905680:three_prime_UTR 45.0%
GAATATGGATCTGGGTATGG+TGG - chr6_2:3903927-3903946 Msa0905680:three_prime_UTR 45.0%
AGATCCATATTCACCCTCCT+GGG + chr6_2:3903961-3903980 None:intergenic 45.0%
AGGAGGGTGAATATGGATCT+GGG - chr6_2:3903961-3903980 Msa0905680:CDS 45.0%
GGTGAATATGGATCTGGGTA+TGG - chr6_2:3903924-3903943 Msa0905680:three_prime_UTR 45.0%
GAATATGGATCTGGGTATGG+TGG - chr6_2:3903927-3903946 Msa0905680:three_prime_UTR 45.0%
GTGGAAGGAAGCAAGAATCT+GGG - chr6_2:3903988-3904007 Msa0905680:CDS 45.0%
AGGAAGCAAGAATCTGGGTA+TGG - chr6_2:3903993-3904012 Msa0905680:CDS 45.0%
GGAAGCAAGAATCTGGGTAT+GGG - chr6_2:3903994-3904013 Msa0905680:CDS 45.0%
TGGGTATGGGAGAAAGAATG+AGG - chr6_2:3904007-3904026 Msa0905680:CDS 45.0%
GAGGAAAGTGAATATGGGTC+TGG - chr6_2:3904026-3904045 Msa0905680:CDS 45.0%
GAATATGGGTCTGGTTATGG+TGG - chr6_2:3904035-3904054 Msa0905680:intron 45.0%
GCAAGAATCTGGATATGGTG+GGG - chr6_2:3904064-3904083 Msa0905680:intron 45.0%
TCTCCCATATTCAGACTCCT+GGG + chr6_2:3904090-3904109 None:intergenic 45.0%
TTCTCCCATATTCAGACTCC+TGG + chr6_2:3904091-3904110 None:intergenic 45.0%
GAGGAAAGTGATTATGGGTC+TGG - chr6_2:3904116-3904135 Msa0905680:intron 45.0%
GATTATGGGTCTGGATATGG+TGG - chr6_2:3904125-3904144 Msa0905680:intron 45.0%
CAAGAATCTGGATATGGGTC+TGG - chr6_2:3904155-3904174 Msa0905680:intron 45.0%
TCTGGATATGGGTCTGGTTA+TGG - chr6_2:3904161-3904180 Msa0905680:intron 45.0%
GATATGGGTCTGGTTATGGT+GGG - chr6_2:3904165-3904184 Msa0905680:intron 45.0%
GAGGAAAGTGAATATGGGTC+TGG - chr6_2:3904026-3904045 Msa0905680:CDS 45.0%
GAATATGGGTCTGGATATGG+TGG - chr6_2:3904203-3904222 Msa0905680:intron 45.0%
AAAGAATGAGGAGGAGAGTG+AGG - chr6_2:3904229-3904248 Msa0905680:intron 45.0%
AAGAATGAGGAGGAGAGTGA+GGG - chr6_2:3904230-3904249 Msa0905680:intron 45.0%
AAGAATGAGTATGAGAGCGG+TGG - chr6_2:3904263-3904282 Msa0905680:intron 45.0%
GGAGGAAGAAGAGTGGTTAT+GGG - chr6_2:3904303-3904322 Msa0905680:intron 45.0%
GAGGAAGAAGAGTGGTTATG+GGG - chr6_2:3904304-3904323 Msa0905680:intron 45.0%
TATGAGAGGAAGCCTAGCTA+TGG - chr6_2:3904359-3904378 Msa0905680:intron 45.0%
AGAGGAAACCTAGCTATGGA+AGG - chr6_2:3904480-3904499 Msa0905680:intron 45.0%
TCATCACTCCTTCCATAGCT+AGG + chr6_2:3904491-3904510 None:intergenic 45.0%
! CTATGGAAGGAGTGATGATG+AGG - chr6_2:3904493-3904512 Msa0905680:intron 45.0%
ATGAGGAGAAGCCAAGCTAT+GGG - chr6_2:3904510-3904529 Msa0905680:intron 45.0%
TACGAGAGGAAACCTAGCTA+TGG - chr6_2:3904545-3904564 Msa0905680:intron 45.0%
AGAGGAAACCTAGCTATGGA+AGG - chr6_2:3904480-3904499 Msa0905680:intron 45.0%
TCATCACTCCTTCCATAGCT+AGG + chr6_2:3904491-3904510 None:intergenic 45.0%
! CTATGGAAGGAGTGATGATG+AGG - chr6_2:3904493-3904512 Msa0905680:intron 45.0%
!! CTAGTTTTCCTCCCATAGCT+CGG + chr6_2:3904593-3904612 None:intergenic 45.0%
GGAGGAAAACTAGCTATGGA+AGG - chr6_2:3904600-3904619 Msa0905680:intron 45.0%
! CTATGGAAGGAGTGATGATG+AGG - chr6_2:3904493-3904512 Msa0905680:intron 45.0%
AACCGAGCTATGGTTATGAG+AGG - chr6_2:3904639-3904658 Msa0905680:intron 45.0%
! GGTGATGATGATGAGGGATA+CGG - chr6_2:3904665-3904684 Msa0905680:intron 45.0%
! GGGTTGTAACTTGTAACGCA+AGG + chr6_2:3904863-3904882 None:intergenic 45.0%
TTACAACCCCTTCCAATCCT+AGG - chr6_2:3904874-3904893 Msa0905680:intron 45.0%
ATCCTACCTAGGATTGGAAG+GGG + chr6_2:3904883-3904902 None:intergenic 45.0%
ATTAGGATTTAGGGGCAAGG+GGG + chr6_2:3904982-3905001 None:intergenic 45.0%
CTACAACCAAAGAGGGAACA+AGG + chr6_2:3905181-3905200 None:intergenic 45.0%
CGCTACAATTGAAGAGAGTG+TGG + chr6_2:3905226-3905245 None:intergenic 45.0%
TCACATTTGTAGTGGCTCCT+AGG - chr6_2:3905354-3905373 Msa0905680:intron 45.0%
!! TGCACTAGTCTGACTTTTGC+TGG - chr6_2:3905929-3905948 Msa0905680:CDS 45.0%
TGCAAATTGGGGGTAAGGAA+TGG + chr6_2:3905958-3905977 None:intergenic 45.0%
TTCTCTGCAAATTGGGGGTA+AGG + chr6_2:3905963-3905982 None:intergenic 45.0%
CTTCCTTCCCTCATCATCAT+CGG + chr6_2:3906488-3906507 None:intergenic 45.0%
CGTCATCATAACTCTTGCGA+TGG + chr6_2:3906531-3906550 None:intergenic 45.0%
TTGGCAGGCAATATCATACC+AGG + chr6_2:3906805-3906824 None:intergenic 45.0%
CCACACTCCTGCTTATTCTT+TGG + chr6_2:3906877-3906896 None:intergenic 45.0%
CCAAAGAATAAGCAGGAGTG+TGG - chr6_2:3906874-3906893 Msa0905680:CDS 45.0%
! AGCAGGAGTGTGGTGATTAT+AGG - chr6_2:3906884-3906903 Msa0905680:CDS 45.0%
! TACTTCACTCGTGGCGGAAA+CGG - chr6_2:3903534-3903553 Msa0905680:three_prime_UTR 50.0%
TACGATCCAACACCATACGG+TGG - chr6_2:3903585-3903604 Msa0905680:three_prime_UTR 50.0%
TATCCACCACCGTATGGTGT+TGG + chr6_2:3903594-3903613 None:intergenic 50.0%
ATGTCGTATCCACCACCGTA+TGG + chr6_2:3903600-3903619 None:intergenic 50.0%
! AGGTGGAATTGGTCTACCGT+AGG + chr6_2:3903631-3903650 None:intergenic 50.0%
CTAGGTGCAGGTCTAGGTTT+AGG + chr6_2:3903789-3903808 None:intergenic 50.0%
AAACCTAGACCTGCACCTAG+TGG - chr6_2:3903789-3903808 Msa0905680:three_prime_UTR 50.0%
AAACCACTAGGTGCAGGTCT+AGG + chr6_2:3903795-3903814 None:intergenic 50.0%
GGATGAAAACCACTAGGTGC+AGG + chr6_2:3903801-3903820 None:intergenic 50.0%
! TATGGTGGGAGGAAGCAAGA+GGG - chr6_2:3903903-3903922 Msa0905680:three_prime_UTR 50.0%
TATGGATCTGGGTATGGTGG+TGG - chr6_2:3903930-3903949 Msa0905680:three_prime_UTR 50.0%
CAGATCCATATTCACCCTCC+TGG + chr6_2:3903962-3903981 None:intergenic 50.0%
CAGGAGGGTGAATATGGATC+TGG - chr6_2:3903960-3903979 Msa0905680:CDS 50.0%
! ATGGATCTGGGTATGGTGGA+AGG - chr6_2:3903973-3903992 Msa0905680:CDS 50.0%
GGTGGAAGGAAGCAAGAATC+TGG - chr6_2:3903987-3904006 Msa0905680:CDS 50.0%
! ATGGGTCTGGTTATGGTGGA+AGG - chr6_2:3904039-3904058 Msa0905680:intron 50.0%
GGTGGAAGGAAGCAAGAATC+TGG - chr6_2:3903987-3904006 Msa0905680:CDS 50.0%
GGATATGGGTCTGGTTATGG+TGG - chr6_2:3904164-3904183 Msa0905680:intron 50.0%
TGGTGGGAGAAAGAATGAGG+AGG - chr6_2:3904220-3904239 Msa0905680:intron 50.0%
AGGAGGAGAGTGAGGGATAT+GGG - chr6_2:3904237-3904256 Msa0905680:intron 50.0%
TGAGTATGAGAGCGGTGGAT+CGG - chr6_2:3904268-3904287 Msa0905680:intron 50.0%
GGGAGGAAGAAGAGTGGTTA+TGG - chr6_2:3904302-3904321 Msa0905680:intron 50.0%
GAAGAAGAGTGGTTATGGGG+AGG - chr6_2:3904307-3904326 Msa0905680:intron 50.0%
AGTGGTTATGGGGAGGAAGA+AGG - chr6_2:3904314-3904333 Msa0905680:intron 50.0%
GTGGTTATGGGGAGGAAGAA+GGG - chr6_2:3904315-3904334 Msa0905680:intron 50.0%
TATGGGGAGGAAGAAGGGTA+TGG - chr6_2:3904320-3904339 Msa0905680:intron 50.0%
! AAGAAGGGTATGGAGGTGGA+AGG - chr6_2:3904330-3904349 Msa0905680:intron 50.0%
GTGGAAGGAGTGAGTATGAG+AGG - chr6_2:3904345-3904364 Msa0905680:intron 50.0%
AGAGGAAGCCTAGCTATGGA+AGG - chr6_2:3904363-3904382 Msa0905680:intron 50.0%
TCGTCACTCCTTCCATAGCT+AGG + chr6_2:3904374-3904393 None:intergenic 50.0%
CTATGGAAGGAGTGACGAAG+AGG - chr6_2:3904376-3904395 Msa0905680:intron 50.0%
TAGCTATGGACGGAGTGATG+AGG - chr6_2:3904424-3904443 Msa0905680:intron 50.0%
TACTCAGTCCTCCCATAGCT+CGG + chr6_2:3904458-3904477 None:intergenic 50.0%
ATGGGAGGACTGAGTATGAG+AGG - chr6_2:3904462-3904481 Msa0905680:intron 50.0%
GATGAGGAGAAGCCAAGCTA+TGG - chr6_2:3904509-3904528 Msa0905680:intron 50.0%
TCAGTAGTCCTCCCATAGCT+TGG + chr6_2:3904524-3904543 None:intergenic 50.0%
ATGAGGAGAAGCCGAGCTAT+GGG - chr6_2:3904579-3904598 Msa0905680:intron 50.0%
GATGAGGAGAAACCGAGCTA+TGG - chr6_2:3904629-3904648 Msa0905680:intron 50.0%
CGCCTCTCATAACCATAGCT+CGG + chr6_2:3904644-3904663 None:intergenic 50.0%
AGCTATGGTTATGAGAGGCG+TGG - chr6_2:3904644-3904663 Msa0905680:intron 50.0%
! AGGCGTGGTGATGATGATGA+GGG - chr6_2:3904659-3904678 Msa0905680:intron 50.0%
AACCCCTTCCAATCCTAGGT+AGG - chr6_2:3904878-3904897 Msa0905680:intron 50.0%
TTAGGATTTAGGGGCAAGGG+GGG + chr6_2:3904981-3905000 None:intergenic 50.0%
AAAGGGCTCACTTAGCACCT+AGG + chr6_2:3905374-3905393 None:intergenic 50.0%
GTAAGAAACCGCGAGCCTAA+AGG + chr6_2:3906065-3906084 None:intergenic 50.0%
! ATCACGTTTTCGTACCACGC+AGG - chr6_2:3906447-3906466 Msa0905680:CDS 50.0%
! TCACGTTTTCGTACCACGCA+GGG - chr6_2:3906448-3906467 Msa0905680:CDS 50.0%
! TGAAGGCTCCGATGATGATG+AGG - chr6_2:3906477-3906496 Msa0905680:CDS 50.0%
! GAAGGCTCCGATGATGATGA+GGG - chr6_2:3906478-3906497 Msa0905680:CDS 50.0%
TCTTGCGATGGTGACTCTTG+TGG + chr6_2:3906519-3906538 None:intergenic 50.0%
! AGCATAGTGCATGCATTGGC+AGG + chr6_2:3906820-3906839 None:intergenic 50.0%
GATCCAACACCATACGGTGG+TGG - chr6_2:3903588-3903607 Msa0905680:three_prime_UTR 55.0%
!! CATCCTGAATCTGGTGGTGG+TGG - chr6_2:3903816-3903835 Msa0905680:three_prime_UTR 55.0%
!! AATCTGGTGGTGGTGGTGGT+GGG - chr6_2:3903823-3903842 Msa0905680:three_prime_UTR 55.0%
GGTGGGTATGGGAGGAAACA+AGG - chr6_2:3903840-3903859 Msa0905680:three_prime_UTR 55.0%
! TTGGATCTGGGTATGGTGGG+AGG - chr6_2:3903892-3903911 Msa0905680:three_prime_UTR 55.0%
! GTATGGTGGGAGGAAGCAAG+AGG - chr6_2:3903902-3903921 Msa0905680:three_prime_UTR 55.0%
!! GATCTGGGTATGGTGGTGGT+GGG - chr6_2:3903934-3903953 Msa0905680:three_prime_UTR 55.0%
!! ATCTGGGTATGGTGGTGGTG+GGG - chr6_2:3903935-3903954 Msa0905680:three_prime_UTR 55.0%
GGGCCCAGGAGTCTGAATAT+GGG - chr6_2:3904084-3904103 Msa0905680:intron 55.0%
! ATGGGTCTGGATATGGTGGG+AGG - chr6_2:3904129-3904148 Msa0905680:intron 55.0%
GGTGGGAGGAAGCAAGAATC+TGG - chr6_2:3904143-3904162 Msa0905680:intron 55.0%
! ATGGGTCTGGTTATGGTGGG+AGG - chr6_2:3904168-3904187 Msa0905680:intron 55.0%
! GTCTGGTTATGGTGGGAGGA+AGG - chr6_2:3904172-3904191 Msa0905680:intron 55.0%
! TGGTTATGGTGGGAGGAAGG+AGG - chr6_2:3904175-3904194 Msa0905680:intron 55.0%
GAGGAGGAGAGTGAGGGATA+TGG - chr6_2:3904236-3904255 Msa0905680:intron 55.0%
AGGAGAGTGAGGGATATGGG+AGG - chr6_2:3904240-3904259 Msa0905680:intron 55.0%
CGGTGGATCGGAGTATGGAT+CGG - chr6_2:3904280-3904299 Msa0905680:intron 55.0%
GGTGGATCGGAGTATGGATC+GGG - chr6_2:3904281-3904300 Msa0905680:intron 55.0%
GTGGATCGGAGTATGGATCG+GGG - chr6_2:3904282-3904301 Msa0905680:intron 55.0%
! GAGGAAGAAGGGTATGGAGG+TGG - chr6_2:3904326-3904345 Msa0905680:intron 55.0%
GAAGAGGAGAAGCCGAGCTA+TGG - chr6_2:3904392-3904411 Msa0905680:intron 55.0%
AGGAGAAGCCGAGCTATGGT+AGG - chr6_2:3904396-3904415 Msa0905680:intron 55.0%
CTATGGACGGAGTGATGAGG+AGG - chr6_2:3904427-3904446 Msa0905680:intron 55.0%
AGGAGGAGAAGCCGAGCTAT+GGG - chr6_2:3904444-3904463 Msa0905680:intron 55.0%
AGGAGAAGCCAAGCTATGGG+AGG - chr6_2:3904513-3904532 Msa0905680:intron 55.0%
GGAGGACTACTGAGTACGAG+AGG - chr6_2:3904531-3904550 Msa0905680:intron 55.0%
GATGAGGAGAAGCCGAGCTA+TGG - chr6_2:3904578-3904597 Msa0905680:intron 55.0%
! GAGGCGTGGTGATGATGATG+AGG - chr6_2:3904658-3904677 Msa0905680:intron 55.0%
AAGCATGGCCTTTAGGCTCG+CGG - chr6_2:3906054-3906073 Msa0905680:CDS 55.0%
! GCTCCGATGATGATGAGGGA+AGG - chr6_2:3906482-3906501 Msa0905680:CDS 55.0%
CCACCACCACCACCAGATTC+AGG + chr6_2:3903822-3903841 None:intergenic 60.0%
!! CCTGAATCTGGTGGTGGTGG+TGG - chr6_2:3903819-3903838 Msa0905680:three_prime_UTR 60.0%
!! GAATCTGGTGGTGGTGGTGG+TGG - chr6_2:3903822-3903841 Msa0905680:three_prime_UTR 60.0%
!! GTGGTGGTGGTGGTGGGTAT+GGG - chr6_2:3903829-3903848 Msa0905680:three_prime_UTR 60.0%
!! GGATCTGGGTATGGTGGTGG+TGG - chr6_2:3903933-3903952 Msa0905680:three_prime_UTR 60.0%
! ATCTGGATATGGTGGGGCCC+AGG - chr6_2:3904070-3904089 Msa0905680:intron 60.0%
GGGGCCCAGGAGTCTGAATA+TGG - chr6_2:3904083-3904102 Msa0905680:intron 60.0%
GAGAGCGGTGGATCGGAGTA+TGG - chr6_2:3904275-3904294 Msa0905680:intron 60.0%
GATCGGAGTATGGATCGGGG+AGG - chr6_2:3904285-3904304 Msa0905680:intron 60.0%
GGATCGGGGAGGAAGAAGAG+TGG - chr6_2:3904296-3904315 Msa0905680:intron 60.0%
! GGGGAGGAAGAAGGGTATGG+AGG - chr6_2:3904323-3904342 Msa0905680:intron 60.0%
GAGGAGGAGAAGCCGAGCTA+TGG - chr6_2:3904443-3904462 Msa0905680:intron 60.0%
AGGAGAAGCCGAGCTATGGG+AGG - chr6_2:3904447-3904466 Msa0905680:intron 60.0%
AGGAGAAGCCGAGCTATGGG+AGG - chr6_2:3904447-3904466 Msa0905680:intron 60.0%
! CGTTTTCGTACCACGCAGGG+AGG - chr6_2:3906451-3906470 Msa0905680:CDS 60.0%
ACCACGCAGGGAGGAGATGA+AGG - chr6_2:3906460-3906479 Msa0905680:CDS 60.0%
!! GGTGGTGGTGGTGGTGGGTA+TGG - chr6_2:3903828-3903847 Msa0905680:three_prime_UTR 65.0%
!! GTGGTGGTGGTGGGTATGGG+AGG - chr6_2:3903832-3903851 Msa0905680:three_prime_UTR 65.0%
GGGGCCCAGGAGGGTGAATA+TGG - chr6_2:3903954-3903973 Msa0905680:exon 65.0%
GCCTTCATCTCCTCCCTGCG+TGG + chr6_2:3906464-3906483 None:intergenic 65.0%
!! GTATGGTGGTGGTGGGGCCC+AGG - chr6_2:3903941-3903960 Msa0905680:exon 70.0%
!! TGGTGGTGGTGGGGCCCAGG+AGG - chr6_2:3903944-3903963 Msa0905680:exon 75.0%
!! GGTGGTGGTGGGGCCCAGGA+GGG - chr6_2:3903945-3903964 Msa0905680:exon 75.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 3903528 3906987 3903528 ID=Msa0905680;Name=Msa0905680
chr6_2 mRNA 3903528 3906987 3903528 ID=Msa0905680-mRNA-1;Parent=Msa0905680;Name=Msa0905680-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|0|0.5|2|432|419
chr6_2 exon 3903528 3904046 3903528 ID=Msa0905680-mRNA-1:exon:1200;Parent=Msa0905680-mRNA-1
chr6_2 exon 3905815 3906987 3905815 ID=Msa0905680-mRNA-1:exon:1199;Parent=Msa0905680-mRNA-1
chr6_2 CDS 3905815 3906987 3905815 ID=Msa0905680-mRNA-1:cds;Parent=Msa0905680-mRNA-1
chr6_2 CDS 3903960 3904046 3903960 ID=Msa0905680-mRNA-1:cds;Parent=Msa0905680-mRNA-1
chr6_2 three_prime_UTR 3903528 3903959 3903528 ID=Msa0905680-mRNA-1:three_prime_utr;Parent=Msa0905680-mRNA-1
Gene Sequence

>Msa0905680

ATGTCATACTTCACTCGTGGCGGAAACGGCGACGAAAGCGTCGACGATTTCGACGAATACGATCCAACACCATACGGTGGTGGATACGACATTCACCTTACCTACGGTAGACCAATTCCACCTTCCGATGAAACATGTTACCCATCAGGTTCATCAAACAATGATTTTGATTATGATCGTCCTCAATTTGAATCTTATGCTCAACCTTCTGCTTATGGTGATGAAGCTCTTGCTACTGAGTATAGTAGCTATTCTAGACCTAAACCTAGACCTGCACCTAGTGGTTTTCATCCTGAATCTGGTGGTGGTGGTGGTGGGTATGGGAGGAAACAAGGTTCTGGGTATGGTGGTCAAGAATCTGAAATTGGATCTGGGTATGGTGGGAGGAAGCAAGAGGGTGAATATGGATCTGGGTATGGTGGTGGTGGGGCCCAGGAGGGTGAATATGGATCTGGGTATGGTGGAAGGAAGCAAGAATCTGGGTATGGGAGAAAGAATGAGGAAAGTGAATATGGGTCTGGTTATGGTGGAAGGAAGCAAGAATCTGGATATGGTGGGGCCCAGGAGTCTGAATATGGGAGAAAGAATGAGGAAAGTGATTATGGGTCTGGATATGGTGGGAGGAAGCAAGAATCTGGATATGGGTCTGGTTATGGTGGGAGGAAGGAGGAAAGTGAATATGGGTCTGGATATGGTGGGAGAAAGAATGAGGAGGAGAGTGAGGGATATGGGAGGAAGAATGAGTATGAGAGCGGTGGATCGGAGTATGGATCGGGGAGGAAGAAGAGTGGTTATGGGGAGGAAGAAGGGTATGGAGGTGGAAGGAGTGAGTATGAGAGGAAGCCTAGCTATGGAAGGAGTGACGAAGAGGAGAAGCCGAGCTATGGTAGGAAAACTAGCTATGGACGGAGTGATGAGGAGGAGAAGCCGAGCTATGGGAGGACTGAGTATGAGAGGAAACCTAGCTATGGAAGGAGTGATGATGAGGAGAAGCCAAGCTATGGGAGGACTACTGAGTACGAGAGGAAACCTAGCTATGGAAGGAGTGATGATGAGGAGAAGCCGAGCTATGGGAGGAAAACTAGCTATGGAAGGAGTGATGATGAGGAGAAACCGAGCTATGGTTATGAGAGGCGTGGTGATGATGATGAGGGATACGGTCGTAAGAAATATGGAGGAGATGAAGGCTCCGATGATGATGAGGGAAGGAAGAAGCATCACCACAAGAGTCACCATCGCAAGAGTTATGATGACGAGTAA
Protein sequence

>Msa0905680

MSYFTRGGNGDESVDDFDEYDPTPYGGGYDIHLTYGRPIPPSDETCYPSGSSNNDFDYDRPQFESYAQPSAYGDEALATEYSSYSRPKPRPAPSGFHPESGGGGGGYGRKQGSGYGGQESEIGSGYGGRKQEGEYGSGYGGGGAQEGEYGSGYGGRKQESGYGRKNEESEYGSGYGGRKQESGYGGAQESEYGRKNEESDYGSGYGGRKQESGYGSGYGGRKEESEYGSGYGGRKNEEESEGYGRKNEYESGGSEYGSGRKKSGYGEEEGYGGGRSEYERKPSYGRSDEEEKPSYGRKTSYGRSDEEEKPSYGRTEYERKPSYGRSDDEEKPSYGRTTEYERKPSYGRSDDEEKPSYGRKTSYGRSDDEEKPSYGYERRGDDDEGYGRKKYGGDEGSDDDEGRKKHHHKSHHRKSYDDE*