AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0445750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0445750 MtrunA17_Chr6g0453531 78.199 422 27 8 1 407 1 372 6.33e-155 442
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0445750 AT3G29075.1 55.245 143 44 5 1 142 1 124 1.31e-33 127
Msa0445750 AT1G11440.1 56.000 50 22 0 3 52 117 166 1.24e-11 66.2

Find 204 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTATTTAGTAGGTAATTA+TGG 0.163812 3_3:+20511555 None:intergenic
AGGAAGCAAGATTCTGAATT+TGG 0.188299 3_3:-20514230 Msa0445750:CDS
AAGAATGAGGAAAGTGATTA+TGG 0.218432 3_3:-20514101 Msa0445750:CDS
AGAGCAACATTAACCTATTA+AGG 0.236673 3_3:-20511200 Msa0445750:three_prime_UTR
AAGAATGAGGAAAGTGAATA+TGG 0.238375 3_3:-20514191 Msa0445750:CDS
CATAATTACCTACTAAATAA+AGG 0.239439 3_3:-20511554 Msa0445750:three_prime_UTR
CTGCTTATAACAAACTTCTT+TGG 0.255755 3_3:+20511264 None:intergenic
GGGGCCCAGGAGTCTGAATA+TGG 0.261491 3_3:-20514128 Msa0445750:CDS
AGGAGGAGAGTGAGGGTTAT+GGG 0.265325 3_3:-20513980 Msa0445750:CDS
AGGAGGAGAGTGAGGGTTAT+GGG 0.265325 3_3:-20514013 Msa0445750:CDS
TGATATCTTCCTTTCTTGTT+TGG 0.267494 3_3:-20511517 Msa0445750:three_prime_UTR
TATGCTCAACCTTCTGCTTA+TGG 0.272182 3_3:-20514503 Msa0445750:CDS
GAGGAGGAGAGTGAGGGTTA+TGG 0.279009 3_3:-20513981 Msa0445750:CDS
GAGGAGGAGAGTGAGGGTTA+TGG 0.279009 3_3:-20514014 Msa0445750:CDS
TTCTCCCATATTCAGACTCC+TGG 0.294396 3_3:+20514123 None:intergenic
GGGGCCCAGGAGGGTGAATA+TGG 0.303637 3_3:-20514269 Msa0445750:CDS
GGATCTGGGTATGGTGGTGG+TGG 0.312300 3_3:-20514290 Msa0445750:CDS
TCTTGAGCTTTCAGAACTAT+TGG 0.315272 3_3:-20511480 Msa0445750:three_prime_UTR
GGGAGGAAGAAGAGTGGTTA+TGG 0.316323 3_3:-20513960 Msa0445750:CDS
GCATCTAATACAACCTTAAT+AGG 0.317590 3_3:+20511187 None:intergenic
AGGAAGCAAGAGGGTGAATA+TGG 0.323037 3_3:-20514311 Msa0445750:CDS
AGGAAGCAAGAATCTGGATA+TGG 0.323483 3_3:-20514062 Msa0445750:CDS
TTACACTATTTCTCTCTGTT+TGG 0.329174 3_3:-20511389 Msa0445750:three_prime_UTR
GAGGAAGAAGGGTATGGAGG+AGG 0.335243 3_3:-20513936 Msa0445750:CDS
CAAGATTCTGAATTTGGATC+TGG 0.338180 3_3:-20514224 Msa0445750:CDS
CAAGAATCTGAAATTGGATC+TGG 0.346947 3_3:-20514344 Msa0445750:CDS
GTGGTGGTGGTGGGTATGGG+AGG 0.347122 3_3:-20514391 Msa0445750:CDS
GTATGGTGGTGGTGGGGCCC+AGG 0.347593 3_3:-20514282 Msa0445750:CDS
AAACTAAATGTATTGCTGTT+TGG 0.348124 3_3:-20511454 Msa0445750:three_prime_UTR
TCTGGATATGGGTCTGGATA+TGG 0.349878 3_3:-20514050 Msa0445750:CDS
AGTGAATATGGGTCTGGTTA+TGG 0.355805 3_3:-20514179 Msa0445750:CDS
TTTATTTAGTAGGTAATTAT+GGG 0.359554 3_3:+20511556 None:intergenic
AACACAACAACTCAAACATT+AGG 0.363929 3_3:+20511410 None:intergenic
TGGTGGTGGTGGGGCCCAGG+AGG 0.366945 3_3:-20514279 Msa0445750:CDS
GGTGGTCAAGAATCTGAAAT+TGG 0.368013 3_3:-20514350 Msa0445750:CDS
AGTGATTATGGGTCTGGTTA+TGG 0.375957 3_3:-20514089 Msa0445750:CDS
CTAGGAGCAGGTCTAGGTTT+AGG 0.380180 3_3:+20514440 None:intergenic
ATCTGGGTATGGTGGTGGTG+GGG 0.380832 3_3:-20514288 Msa0445750:CDS
GGAGGAAGAAGAGTGGTTAT+GGG 0.380985 3_3:-20513959 Msa0445750:CDS
GTTTCATCGGAAGGTGGAAT+TGG 0.386796 3_3:+20514587 None:intergenic
CAAGAGGGTGAATATGGATC+TGG 0.396904 3_3:-20514305 Msa0445750:CDS
GAGTCAACCCTTTATTTAGT+AGG 0.398541 3_3:+20511546 None:intergenic
ACACAACAACTCAAACATTA+GGG 0.410366 3_3:+20511411 None:intergenic
GGGGAGGAAGAAGGGTATGG+AGG 0.410870 3_3:-20513939 Msa0445750:CDS
CAAAGAAGTTTGTTATAAGC+AGG 0.415186 3_3:-20511263 Msa0445750:three_prime_UTR
GGTGGGAGGAAGCAAGAATC+TGG 0.415415 3_3:-20514068 Msa0445750:CDS
CCTGAATCTGGTGGTGGTGG+TGG 0.415997 3_3:-20514407 Msa0445750:CDS
GATCTGGGTATGGTGGTGGT+GGG 0.416482 3_3:-20514289 Msa0445750:CDS
AGTGGTTATGGGGAGGAAGA+AGG 0.417130 3_3:-20513948 Msa0445750:CDS
TATGGATCTGGGTATGGTGG+TGG 0.422719 3_3:-20514293 Msa0445750:CDS
AGGAAGAAGGGTATGGAGGA+GGG 0.425811 3_3:-20513935 Msa0445750:CDS
CAGGAGGGTGAATATGGATC+TGG 0.427850 3_3:-20514263 Msa0445750:CDS
TCTGAATTTGGATCTGGGTA+TGG 0.428612 3_3:-20514218 Msa0445750:CDS
GGAGGAAGGAAGCAAGAATC+AGG 0.431165 3_3:-20514158 Msa0445750:CDS
GAAGAATGAGGAGGAGAGTG+AGG 0.433066 3_3:-20513988 Msa0445750:CDS
GAAGAATGAGGAGGAGAGTG+AGG 0.433066 3_3:-20514021 Msa0445750:CDS
ATAATTACCTACTAAATAAA+GGG 0.436075 3_3:-20511553 Msa0445750:three_prime_UTR
GACTGTCGTTGCTGTTTGAA+TGG 0.441452 3_3:-20511586 Msa0445750:three_prime_UTR
AGGAAGCAAGAATCAGGATA+TGG 0.443503 3_3:-20514152 Msa0445750:CDS
GTGGTTATGGGGAGGAAGAA+GGG 0.452123 3_3:-20513947 Msa0445750:CDS
GAGGAAAGTGATTATGGGTC+TGG 0.452777 3_3:-20514095 Msa0445750:CDS
GGTGGTGGTGGGGCCCAGGA+GGG 0.455266 3_3:-20514278 Msa0445750:CDS
CAGATCCATATTCACCCTCC+TGG 0.458005 3_3:+20514264 None:intergenic
GAGGAGGAGAAGCCGAGCTA+TGG 0.460470 3_3:-20513819 Msa0445750:CDS
TATGGGAGGAAACAAGGATC+TGG 0.464076 3_3:-20514377 Msa0445750:CDS
CATCTGTGGGATGCATTAGC+AGG 0.466729 3_3:+20511330 None:intergenic
ATGGGTCTGGTTATGGAGGA+AGG 0.469449 3_3:-20514172 Msa0445750:CDS
CTGAATTTGGATCTGGGTAT+GGG 0.471206 3_3:-20514217 Msa0445750:CDS
GATGAGGAGAAGCCGAGCTA+TGG 0.471950 3_3:-20513684 Msa0445750:CDS
CAAGAATCTGGATATGGGTC+TGG 0.473527 3_3:-20514056 Msa0445750:CDS
GATGAGGAGAAGCCGAGCTA+TGG 0.479965 3_3:-20513870 Msa0445750:CDS
TGAGCATAAGATTCAAATTG+AGG 0.480996 3_3:+20514518 None:intergenic
TACTTCACTCGTGGCGGAAA+CGG 0.482929 3_3:-20514692 Msa0445750:CDS
AGAATGAGGAAAGTGATTAT+GGG 0.485627 3_3:-20514100 Msa0445750:CDS
TTGTATTAGATGCACTTTGA+GGG 0.486368 3_3:-20511177 Msa0445750:three_prime_UTR
GATGAGGAGAAGCCAAGCTA+TGG 0.490330 3_3:-20513753 Msa0445750:CDS
GATGAAACATGTTACCCATC+AGG 0.490672 3_3:-20514572 Msa0445750:CDS
GGTGAATATGGATCTGGGTA+TGG 0.490996 3_3:-20514257 Msa0445750:CDS
GAATATGGATCTGGGTATGG+TGG 0.492676 3_3:-20514296 Msa0445750:CDS
AGGAGGAGAAGCCGAGCTAT+GGG 0.492768 3_3:-20513818 Msa0445750:CDS
GATGATGATGATGAGGGATA+TGG 0.494555 3_3:-20513597 Msa0445750:CDS
GAGGGAGGAGTGAGTATGAG+AGG 0.495733 3_3:-20513917 Msa0445750:CDS
ATGGATCTGGGTATGGTGGA+AGG 0.498189 3_3:-20514250 Msa0445750:CDS
GAGGAAAGTGAATATGGGTC+TGG 0.499294 3_3:-20514185 Msa0445750:CDS
TCATCACTCCTTCCATAGCT+AGG 0.506102 3_3:+20513705 None:intergenic
TCATCACTCCTTCCATAGCT+AGG 0.506102 3_3:+20513774 None:intergenic
TCAGCAGTCCTCCCATAGCT+TGG 0.506372 3_3:+20513741 None:intergenic
TATGGGGAGGAAGAAGGGTA+TGG 0.507252 3_3:-20513942 Msa0445750:CDS
ATCAGGATATGGTGGGGCCC+AGG 0.508854 3_3:-20514141 Msa0445750:CDS
TACTCAGTCCTCCCATAGCT+CGG 0.510767 3_3:+20513807 None:intergenic
ATGAGGAGAAGCCGAGCTAT+GGG 0.513016 3_3:-20513683 Msa0445750:CDS
GATTATGGGTCTGGTTATGG+TGG 0.514342 3_3:-20514086 Msa0445750:CDS
GAATATGGATCTGGGTATGG+TGG 0.514465 3_3:-20514254 Msa0445750:CDS
ATGAGGAGAAGCCGAGCTAT+GGG 0.515456 3_3:-20513869 Msa0445750:CDS
TCTCCCATATTCAGACTCCT+GGG 0.524313 3_3:+20514124 None:intergenic
CATCCTGAATCTGGTGGTGG+TGG 0.525129 3_3:-20514410 Msa0445750:CDS
GGTGAATATGGATCTGGGTA+TGG 0.528384 3_3:-20514299 Msa0445750:CDS
GTTGTATTAGATGCACTTTG+AGG 0.528494 3_3:-20511178 Msa0445750:three_prime_UTR
TCGTCACTCCTTCCATAGCT+AGG 0.528757 3_3:+20513891 None:intergenic
GAATATGGGTCTGGTTATGG+AGG 0.534629 3_3:-20514176 Msa0445750:CDS
TAATATAGTCCAAACAAGAA+AGG 0.537089 3_3:+20511508 None:intergenic
GGATATGGGTCTGGATATGG+TGG 0.537207 3_3:-20514047 Msa0445750:CDS
AGGAAACAAGGATCTGGGTA+TGG 0.537850 3_3:-20514371 Msa0445750:CDS
CTTCCTCCCCTCATCATCAT+CGG 0.538297 3_3:+20511664 None:intergenic
GGTGGGTATGGGAGGAAACA+AGG 0.539324 3_3:-20514383 Msa0445750:CDS
GGGTTATGGGAGGAAGAATG+AGG 0.539364 3_3:-20514000 Msa0445750:CDS
ACGACGCAGGGAGGAGATGA+AGG 0.539747 3_3:-20511689 Msa0445750:intron
AAACAAGCATGGTGCATCTG+TGG 0.541420 3_3:+20511316 None:intergenic
GTTTGTTATAAGCAGGAGTG+AGG 0.544454 3_3:-20511256 Msa0445750:three_prime_UTR
AGAATGAGGAAAGTGAATAT+GGG 0.544489 3_3:-20514190 Msa0445750:CDS
TATGAGAGGAAGCCTAGCTA+TGG 0.544851 3_3:-20513903 Msa0445750:CDS
GGAAGCAAGAATCTGGATAT+GGG 0.545271 3_3:-20514061 Msa0445750:CDS
TATCCACCACCGTATGGTGT+TGG 0.548698 3_3:+20514635 None:intergenic
ATATGGTGGGAGGAAGAATG+AGG 0.551005 3_3:-20514033 Msa0445750:CDS
ATGAGGAGAAGCCAAGCTAT+GGG 0.551651 3_3:-20513752 Msa0445750:CDS
TATGGGAGGAAAACTAGCTA+TGG 0.553310 3_3:-20513666 Msa0445750:CDS
CGCCTCTCATAACCATAGCT+CGG 0.553721 3_3:+20513621 None:intergenic
ATGGGTCTGGTTATGGTGGG+AGG 0.553742 3_3:-20514082 Msa0445750:CDS
AAGATTCTGAATTTGGATCT+GGG 0.554398 3_3:-20514223 Msa0445750:CDS
TTTCATCCTGAATCTGGTGG+TGG 0.554661 3_3:-20514413 Msa0445750:CDS
TGTTTGAATTTGATTACACC+TGG 0.555743 3_3:-20511363 Msa0445750:three_prime_UTR
AAATTGGATCTGGGTATGGT+GGG 0.556092 3_3:-20514334 Msa0445750:CDS
TTGGATCTGGGTATGGTGGG+AGG 0.557126 3_3:-20514331 Msa0445750:CDS
AAACCACTAGGAGCAGGTCT+AGG 0.558052 3_3:+20514434 None:intergenic
GGATGAAAACCACTAGGAGC+AGG 0.558809 3_3:+20514428 None:intergenic
GAATTGGTCTACCGTAGGTA+AGG 0.559097 3_3:+20514603 None:intergenic
ATTATGGGTCTGGTTATGGT+GGG 0.561999 3_3:-20514085 Msa0445750:CDS
TGAAGGCTCCGATGATGATG+AGG 0.563468 3_3:-20511672 Msa0445750:CDS
AGGAGAGTGAGGGTTATGGG+AGG 0.563885 3_3:-20513977 Msa0445750:CDS
AGGAGAGTGAGGGTTATGGG+AGG 0.563885 3_3:-20514010 Msa0445750:CDS
GGGCCCAGGAGTCTGAATAT+GGG 0.564705 3_3:-20514127 Msa0445750:CDS
CTATGGAAGGAGTGATGATG+AGG 0.564747 3_3:-20513649 Msa0445750:CDS
CTATGGAAGGAGTGATGATG+AGG 0.564747 3_3:-20513700 Msa0445750:CDS
CTATGGAAGGAGTGATGATG+AGG 0.564747 3_3:-20513769 Msa0445750:CDS
TGGGTATGGGAGAAAGAATG+AGG 0.565655 3_3:-20514204 Msa0445750:CDS
TGAATATGGGAGAAAGAATG+AGG 0.566293 3_3:-20514114 Msa0445750:CDS
AAGAATGAGGAGGAGAGTGA+GGG 0.570080 3_3:-20513987 Msa0445750:CDS
AAGAATGAGGAGGAGAGTGA+GGG 0.570080 3_3:-20514020 Msa0445750:CDS
GAAATTGGATCTGGGTATGG+TGG 0.570260 3_3:-20514335 Msa0445750:CDS
AAGAATCTGAAATTGGATCT+GGG 0.570455 3_3:-20514343 Msa0445750:CDS
GAAGGCTCCGATGATGATGA+GGG 0.571314 3_3:-20511671 Msa0445750:CDS
TATGAGAGGAAACCTAGCTA+TGG 0.572094 3_3:-20513786 Msa0445750:CDS
AGATCCATATTCACCCTCCT+GGG 0.572216 3_3:+20514265 None:intergenic
ACTCGTCATCATAACTCTTG+CGG 0.572679 3_3:+20511618 None:intergenic
GGGTAACATGTTTCATCGGA+AGG 0.578559 3_3:+20514578 None:intergenic
GATGAGGAGAAACCGAGCTA+TGG 0.578916 3_3:-20513633 Msa0445750:CDS
GAAGAAGAGTGGTTATGGGG+AGG 0.579031 3_3:-20513955 Msa0445750:CDS
TACGAGAGGAAACCTAGCTA+TGG 0.580456 3_3:-20513717 Msa0445750:CDS
AGGAGGGTGAATATGGATCT+GGG 0.581883 3_3:-20514262 Msa0445750:CDS
AAGAGGGTGAATATGGATCT+GGG 0.581883 3_3:-20514304 Msa0445750:CDS
AAGAAGGGTATGGAGGAGGG+AGG 0.581914 3_3:-20513932 Msa0445750:CDS
TATGGGAGGAAAACTAGCTA+TGG 0.582880 3_3:-20513852 Msa0445750:CDS
GAGGAAGAAGAGTGGTTATG+GGG 0.583125 3_3:-20513958 Msa0445750:CDS
AGCAAGAATCAGGATATGGT+GGG 0.583623 3_3:-20514148 Msa0445750:CDS
TCTGAAATTGGATCTGGGTA+TGG 0.586258 3_3:-20514338 Msa0445750:CDS
AAGCAAGAATCAGGATATGG+TGG 0.586655 3_3:-20514149 Msa0445750:CDS
TATGGTGGGAGGAAGCAAGA+GGG 0.587340 3_3:-20514320 Msa0445750:CDS
GATCCAACACCATACGGTGG+TGG 0.587938 3_3:-20514638 Msa0445750:CDS
AATTAAATATTAAACAAGCA+TGG 0.599782 3_3:+20511305 None:intergenic
ATGGGAGGAAACAAGGATCT+GGG 0.600433 3_3:-20514376 Msa0445750:CDS
TACGACATTCACCTTACCTA+CGG 0.602527 3_3:-20514614 Msa0445750:CDS
ATGGGAGGACTGAGTATGAG+AGG 0.603391 3_3:-20513800 Msa0445750:CDS
ATGTCGTATCCACCACCGTA+TGG 0.603594 3_3:+20514629 None:intergenic
TGATGGGTAACATGTTTCAT+CGG 0.604030 3_3:+20514574 None:intergenic
GGAGGAAAACTAGCTATGGA+AGG 0.608209 3_3:-20513662 Msa0445750:CDS
GAATACGATCCAACACCATA+CGG 0.609449 3_3:-20514644 Msa0445750:CDS
AGAGGAAGCCTAGCTATGGA+AGG 0.611158 3_3:-20513899 Msa0445750:CDS
GAGGCGTGATGATGATGATG+AGG 0.615292 3_3:-20513604 Msa0445750:CDS
CGTCATCATAACTCTTGCGG+TGG 0.615697 3_3:+20511621 None:intergenic
AACAAGCATGGTGCATCTGT+GGG 0.617266 3_3:+20511317 None:intergenic
GGTTATGGGAGGAAGAAGAG+TGG 0.619008 3_3:-20513966 Msa0445750:CDS
GTATGGTGGGAGGAAGCAAG+AGG 0.619865 3_3:-20514321 Msa0445750:CDS
TCTTGCGGTGGTGACTCTTG+TGG 0.620902 3_3:+20511633 None:intergenic
TGGTGGGAGGAAGAATGAGG+AGG 0.621895 3_3:-20514030 Msa0445750:CDS
AGAGGAAACCTAGCTATGGA+AGG 0.622082 3_3:-20513782 Msa0445750:CDS
TTAGCAGGCAATATCATACC+AGG 0.628023 3_3:+20511345 None:intergenic
CTATGGACGGAGTGATGAGG+AGG 0.628211 3_3:-20513835 Msa0445750:CDS
AAACAAGGATCTGGGTATGG+TGG 0.631712 3_3:-20514368 Msa0445750:CDS
TTATGGGAGGAAGAATGAGG+AGG 0.633158 3_3:-20513997 Msa0445750:CDS
TAACATGTTTCATCGGAAGG+TGG 0.634933 3_3:+20514581 None:intergenic
CATTGTTTGATGAACCTGAT+GGG 0.635614 3_3:+20514558 None:intergenic
GCTTCATCACCATAAGCAGA+AGG 0.635872 3_3:+20514494 None:intergenic
AGAGGAAACCTAGCTATGGA+AGG 0.637235 3_3:-20513713 Msa0445750:CDS
AACCGAGCTATGGTTATGAG+AGG 0.637534 3_3:-20513623 Msa0445750:CDS
GGAGGACTGCTGAGTACGAG+AGG 0.638304 3_3:-20513731 Msa0445750:CDS
GATATGGGTCTGGATATGGT+GGG 0.639585 3_3:-20514046 Msa0445750:CDS
CTATGGAAGGAGTGACGATG+AGG 0.639792 3_3:-20513886 Msa0445750:CDS
ATGTCATACTTCACTCGTGG+CGG 0.640823 3_3:-20514698 Msa0445750:CDS
AGGTGGAATTGGTCTACCGT+AGG 0.641004 3_3:+20514598 None:intergenic
ATGGGTCTGGATATGGTGGG+AGG 0.642952 3_3:-20514043 Msa0445750:CDS
TAGCTATGGACGGAGTGATG+AGG 0.653663 3_3:-20513838 Msa0445750:CDS
AGGAGAAGCCGAGCTATGGG+AGG 0.655067 3_3:-20513815 Msa0445750:CDS
GCAAGAATCAGGATATGGTG+GGG 0.656360 3_3:-20514147 Msa0445750:CDS
GGAGGAAAACTAGCTATGGA+CGG 0.657547 3_3:-20513848 Msa0445750:CDS
AGGAGAAGCCGAGCTATGGG+AGG 0.661652 3_3:-20513680 Msa0445750:CDS
AGGAGAAGCCGAGCTATGGG+AGG 0.661652 3_3:-20513866 Msa0445750:CDS
GATTCAGGATGAAAACCACT+AGG 0.664066 3_3:+20514422 None:intergenic
GCTCCGATGATGATGAGGGG+AGG 0.668807 3_3:-20511667 Msa0445750:CDS
TCATTGTTTGATGAACCTGA+TGG 0.670564 3_3:+20514557 None:intergenic
AGGAGAAGCCAAGCTATGGG+AGG 0.672917 3_3:-20513749 Msa0445750:CDS
AAAATGTCATACTTCACTCG+TGG 0.675477 3_3:-20514701 Msa0445750:CDS
AAGGCTCCGATGATGATGAG+GGG 0.691166 3_3:-20511670 Msa0445750:CDS
AAACCTAGACCTGCTCCTAG+TGG 0.693441 3_3:-20514437 Msa0445750:CDS
TACGATCCAACACCATACGG+TGG 0.709648 3_3:-20514641 Msa0445750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATGTTGTTTTCATATATA+TGG - chr3_3:20512391-20512410 Msa0445750:intron 15.0%
!!! TATGTTGTTTTCATATATAT+GGG - chr3_3:20512392-20512411 Msa0445750:intron 15.0%
!! TGAATTAATAATCACAAAAT+TGG - chr3_3:20512596-20512615 Msa0445750:intron 15.0%
!! TACTCATAAATAATAATCAA+AGG + chr3_3:20513161-20513180 None:intergenic 15.0%
!! TAGAAGATTTAAGAAATTAA+AGG + chr3_3:20513186-20513205 None:intergenic 15.0%
!!! ATAAATCTTTGAAATTATCA+GGG - chr3_3:20513573-20513592 Msa0445750:intron 15.0%
!! TTTATTTAGTAGGTAATTAT+GGG + chr3_3:20514308-20514327 None:intergenic 15.0%
!! ATAATTACCTACTAAATAAA+GGG - chr3_3:20514308-20514327 Msa0445750:CDS 15.0%
!! AATTAAATATTAAACAAGCA+TGG + chr3_3:20514559-20514578 None:intergenic 15.0%
!!! TATTCTTACTTATGGTTTTA+TGG - chr3_3:20512305-20512324 Msa0445750:intron 20.0%
!! TGTTTAATCTTCTAATTTAG+AGG - chr3_3:20512349-20512368 Msa0445750:intron 20.0%
!! CACTATAATAATGATTTATG+AGG + chr3_3:20512703-20512722 None:intergenic 20.0%
!! TACAGTTACAATTTAAAAAC+GGG + chr3_3:20513049-20513068 None:intergenic 20.0%
!! CTACAGTTACAATTTAAAAA+CGG + chr3_3:20513050-20513069 None:intergenic 20.0%
!!! TTCTTAAATCTTCTATTTTG+AGG - chr3_3:20513191-20513210 Msa0445750:intron 20.0%
!! AAGCTGTATATCATATATTA+CGG + chr3_3:20513375-20513394 None:intergenic 20.0%
!!! GATAAATCTTTGAAATTATC+AGG - chr3_3:20513572-20513591 Msa0445750:intron 20.0%
!!! TAAATCTTTGAAATTATCAG+GGG - chr3_3:20513574-20513593 Msa0445750:intron 20.0%
!!! AAGTCAAAACAATTTTGAAA+TGG + chr3_3:20513886-20513905 None:intergenic 20.0%
!!! CTTTATTTAGTAGGTAATTA+TGG + chr3_3:20514309-20514328 None:intergenic 20.0%
!! CATAATTACCTACTAAATAA+AGG - chr3_3:20514307-20514326 Msa0445750:CDS 20.0%
! TATGTGAGTATTCTTACTTA+TGG - chr3_3:20512297-20512316 Msa0445750:intron 25.0%
! CTTTGAATTCTTGAGAAAAT+TGG - chr3_3:20512623-20512642 Msa0445750:intron 25.0%
! GTGTAATTATGTGAACTAAT+TGG - chr3_3:20512720-20512739 Msa0445750:intron 25.0%
!! ATGTGAACTAATTGGTAATT+TGG - chr3_3:20512728-20512747 Msa0445750:intron 25.0%
! GATTGTTACTACAATCAATA+GGG + chr3_3:20512853-20512872 None:intergenic 25.0%
! AGATTGTTACTACAATCAAT+AGG + chr3_3:20512854-20512873 None:intergenic 25.0%
! TGCATAATAGCATTAGAATT+AGG + chr3_3:20512983-20513002 None:intergenic 25.0%
!!! TTTTGAGGTTTTAATGTGTA+TGG - chr3_3:20513206-20513225 Msa0445750:intron 25.0%
!! TTTTAATGTGTATGGTACTA+TGG - chr3_3:20513214-20513233 Msa0445750:intron 25.0%
! TAGATATAATTGAGTTTGAG+TGG - chr3_3:20513494-20513513 Msa0445750:intron 25.0%
! AAAGATTTATCAGAGTAAGT+TGG + chr3_3:20513563-20513582 None:intergenic 25.0%
!!! CATTTACCTATTTTTCTTCT+CGG + chr3_3:20513719-20513738 None:intergenic 25.0%
! GAGAAGAAAAATAGGTAAAT+GGG - chr3_3:20513718-20513737 Msa0445750:CDS 25.0%
!!! TCAAAATTGTTTTGACTTGT+TGG - chr3_3:20513888-20513907 Msa0445750:CDS 25.0%
! CGATATATGGATTTAATGTT+TGG - chr3_3:20513982-20514001 Msa0445750:CDS 25.0%
!! TTCCAACAATGTACATTTTA+TGG - chr3_3:20514083-20514102 Msa0445750:CDS 25.0%
! ATCCATAAAATGTACATTGT+TGG + chr3_3:20514088-20514107 None:intergenic 25.0%
!! TACATTTTATGGATTTTGCA+AGG - chr3_3:20514094-20514113 Msa0445750:CDS 25.0%
! TAATATAGTCCAAACAAGAA+AGG + chr3_3:20514356-20514375 None:intergenic 25.0%
!! AAACTAAATGTATTGCTGTT+TGG - chr3_3:20514407-20514426 Msa0445750:CDS 25.0%
TGAGCATAAGATTCAAATTG+AGG + chr3_3:20511346-20511365 None:intergenic 30.0%
! AAGAATCTGAAATTGGATCT+GGG - chr3_3:20511518-20511537 Msa0445750:three_prime_UTR 30.0%
AAGATTCTGAATTTGGATCT+GGG - chr3_3:20511638-20511657 Msa0445750:CDS 30.0%
AAGAATGAGGAAAGTGAATA+TGG - chr3_3:20511670-20511689 Msa0445750:CDS 30.0%
AGAATGAGGAAAGTGAATAT+GGG - chr3_3:20511671-20511690 Msa0445750:CDS 30.0%
AAGAATGAGGAAAGTGATTA+TGG - chr3_3:20511760-20511779 Msa0445750:intron 30.0%
AGAATGAGGAAAGTGATTAT+GGG - chr3_3:20511761-20511780 Msa0445750:intron 30.0%
TCAAACTCTATATCCTACTT+AGG + chr3_3:20512565-20512584 None:intergenic 30.0%
AGGTACATATAATATCAGAG+TGG + chr3_3:20512683-20512702 None:intergenic 30.0%
AAGTTTCACACAATTGTTGA+TGG - chr3_3:20512804-20512823 Msa0445750:intron 30.0%
! CAATTGTTGATGGAAATATG+TGG - chr3_3:20512814-20512833 Msa0445750:intron 30.0%
TAGCATTAGAATTAGGCATT+AGG + chr3_3:20512976-20512995 None:intergenic 30.0%
AGAGTGAACAACTATAAGTT+GGG + chr3_3:20513116-20513135 None:intergenic 30.0%
TGTGGTATGATTGAAGTTTA+GGG + chr3_3:20513259-20513278 None:intergenic 30.0%
TATCAGTGTAGACAATAAAG+TGG + chr3_3:20513434-20513453 None:intergenic 30.0%
TAAAGAAATAATGCAGCTAG+CGG + chr3_3:20513472-20513491 None:intergenic 30.0%
! ATTTTTCTTCTCGGCAAATT+GGG + chr3_3:20513710-20513729 None:intergenic 30.0%
! TATTTTTCTTCTCGGCAAAT+TGG + chr3_3:20513711-20513730 None:intergenic 30.0%
AATTTGCCGAGAAGAAAAAT+AGG - chr3_3:20513710-20513729 Msa0445750:CDS 30.0%
CGAGAAGAAAAATAGGTAAA+TGG - chr3_3:20513717-20513736 Msa0445750:CDS 30.0%
CAGAAAGTGATAGAATGAAT+GGG + chr3_3:20513773-20513792 None:intergenic 30.0%
ATGTACATTGTTGGAATGTT+AGG + chr3_3:20514079-20514098 None:intergenic 30.0%
TGATATCTTCCTTTCTTGTT+TGG - chr3_3:20514344-20514363 Msa0445750:CDS 30.0%
ACACAACAACTCAAACATTA+GGG + chr3_3:20514453-20514472 None:intergenic 30.0%
AACACAACAACTCAAACATT+AGG + chr3_3:20514454-20514473 None:intergenic 30.0%
! TTACACTATTTCTCTCTGTT+TGG - chr3_3:20514472-20514491 Msa0445750:CDS 30.0%
TGTTTGAATTTGATTACACC+TGG - chr3_3:20514498-20514517 Msa0445750:CDS 30.0%
CTGCTTATAACAAACTTCTT+TGG + chr3_3:20514600-20514619 None:intergenic 30.0%
!! CAAAGAAGTTTGTTATAAGC+AGG - chr3_3:20514598-20514617 Msa0445750:CDS 30.0%
AGAGCAACATTAACCTATTA+AGG - chr3_3:20514661-20514680 Msa0445750:CDS 30.0%
GCATCTAATACAACCTTAAT+AGG + chr3_3:20514677-20514696 None:intergenic 30.0%
TTGTATTAGATGCACTTTGA+GGG - chr3_3:20514684-20514703 Msa0445750:CDS 30.0%
! TGATGGGTAACATGTTTCAT+CGG + chr3_3:20511290-20511309 None:intergenic 35.0%
CATTGTTTGATGAACCTGAT+GGG + chr3_3:20511306-20511325 None:intergenic 35.0%
TCATTGTTTGATGAACCTGA+TGG + chr3_3:20511307-20511326 None:intergenic 35.0%
! CAAGAATCTGAAATTGGATC+TGG - chr3_3:20511517-20511536 Msa0445750:three_prime_UTR 35.0%
AGGAAGCAAGATTCTGAATT+TGG - chr3_3:20511631-20511650 Msa0445750:CDS 35.0%
CAAGATTCTGAATTTGGATC+TGG - chr3_3:20511637-20511656 Msa0445750:CDS 35.0%
TGAATATGGGAGAAAGAATG+AGG - chr3_3:20511747-20511766 Msa0445750:intron 35.0%
!! GAATATTTTTGCCCTTTGCT+AGG - chr3_3:20512437-20512456 Msa0445750:intron 35.0%
GATCATAAGATCCTAGCAAA+GGG + chr3_3:20512451-20512470 None:intergenic 35.0%
AGATCATAAGATCCTAGCAA+AGG + chr3_3:20512452-20512471 None:intergenic 35.0%
CTCTATATCCTACTTAGGAT+CGG + chr3_3:20512560-20512579 None:intergenic 35.0%
ACTACAATCAATAGGGAACA+AGG + chr3_3:20512846-20512865 None:intergenic 35.0%
! AGTGAACAACTATAAGTTGG+GGG + chr3_3:20513114-20513133 None:intergenic 35.0%
GAGTGAACAACTATAAGTTG+GGG + chr3_3:20513115-20513134 None:intergenic 35.0%
CAGAGTGAACAACTATAAGT+TGG + chr3_3:20513117-20513136 None:intergenic 35.0%
TGGTATGATTGAAGTTTAGG+GGG + chr3_3:20513257-20513276 None:intergenic 35.0%
GTGGTATGATTGAAGTTTAG+GGG + chr3_3:20513258-20513277 None:intergenic 35.0%
GTGTGGTATGATTGAAGTTT+AGG + chr3_3:20513260-20513279 None:intergenic 35.0%
ACTACATGATAGCTGACATA+CGG - chr3_3:20513278-20513297 Msa0445750:intron 35.0%
CACTTAAGCTGTGTAGTAAA+TGG + chr3_3:20513327-20513346 None:intergenic 35.0%
AAAGAAATAATGCAGCTAGC+GGG + chr3_3:20513471-20513490 None:intergenic 35.0%
TTGAAATTATCAGGGGTGAT+AGG - chr3_3:20513581-20513600 Msa0445750:intron 35.0%
!! TGAACTAGTCTGACTTTTAC+TGG - chr3_3:20513669-20513688 Msa0445750:CDS 35.0%
! TTTTTCTTCTCGGCAAATTG+GGG + chr3_3:20513709-20513728 None:intergenic 35.0%
AATAGGTAAATGGGATGCTA+TGG - chr3_3:20513727-20513746 Msa0445750:CDS 35.0%
GTGATAGAATGAATGGGAAT+GGG + chr3_3:20513767-20513786 None:intergenic 35.0%
AGTGATAGAATGAATGGGAA+TGG + chr3_3:20513768-20513787 None:intergenic 35.0%
GCAGAAAGTGATAGAATGAA+TGG + chr3_3:20513774-20513793 None:intergenic 35.0%
ACTTAGGACTTTCATGTATG+AGG + chr3_3:20513942-20513961 None:intergenic 35.0%
GAAAACTGCAACATGTACTT+AGG + chr3_3:20513958-20513977 None:intergenic 35.0%
! GCAGTTTTCAAAGCGATATA+TGG - chr3_3:20513969-20513988 Msa0445750:CDS 35.0%
! GAGTCAACCCTTTATTTAGT+AGG + chr3_3:20514318-20514337 None:intergenic 35.0%
TCTTGAGCTTTCAGAACTAT+TGG - chr3_3:20514381-20514400 Msa0445750:CDS 35.0%
GTTGTATTAGATGCACTTTG+AGG - chr3_3:20514683-20514702 Msa0445750:CDS 35.0%
GAATACGATCCAACACCATA+CGG - chr3_3:20511217-20511236 Msa0445750:three_prime_UTR 40.0%
TACGACATTCACCTTACCTA+CGG - chr3_3:20511247-20511266 Msa0445750:three_prime_UTR 40.0%
TAACATGTTTCATCGGAAGG+TGG + chr3_3:20511283-20511302 None:intergenic 40.0%
GATGAAACATGTTACCCATC+AGG - chr3_3:20511289-20511308 Msa0445750:three_prime_UTR 40.0%
TATGCTCAACCTTCTGCTTA+TGG - chr3_3:20511358-20511377 Msa0445750:three_prime_UTR 40.0%
GATTCAGGATGAAAACCACT+AGG + chr3_3:20511442-20511461 None:intergenic 40.0%
! AGTGGTTTTCATCCTGAATC+TGG - chr3_3:20511442-20511461 Msa0445750:three_prime_UTR 40.0%
! GGTGGTCAAGAATCTGAAAT+TGG - chr3_3:20511511-20511530 Msa0445750:three_prime_UTR 40.0%
! TCTGAAATTGGATCTGGGTA+TGG - chr3_3:20511523-20511542 Msa0445750:three_prime_UTR 40.0%
AAATTGGATCTGGGTATGGT+GGG - chr3_3:20511527-20511546 Msa0445750:three_prime_UTR 40.0%
AAGAGGGTGAATATGGATCT+GGG - chr3_3:20511557-20511576 Msa0445750:three_prime_UTR 40.0%
TCTGAATTTGGATCTGGGTA+TGG - chr3_3:20511643-20511662 Msa0445750:CDS 40.0%
CTGAATTTGGATCTGGGTAT+GGG - chr3_3:20511644-20511663 Msa0445750:CDS 40.0%
AGTGAATATGGGTCTGGTTA+TGG - chr3_3:20511682-20511701 Msa0445750:CDS 40.0%
AGGAAGCAAGAATCAGGATA+TGG - chr3_3:20511709-20511728 Msa0445750:intron 40.0%
AAGCAAGAATCAGGATATGG+TGG - chr3_3:20511712-20511731 Msa0445750:intron 40.0%
AGCAAGAATCAGGATATGGT+GGG - chr3_3:20511713-20511732 Msa0445750:intron 40.0%
AGTGATTATGGGTCTGGTTA+TGG - chr3_3:20511772-20511791 Msa0445750:intron 40.0%
ATTATGGGTCTGGTTATGGT+GGG - chr3_3:20511776-20511795 Msa0445750:intron 40.0%
AGGAAGCAAGAATCTGGATA+TGG - chr3_3:20511799-20511818 Msa0445750:intron 40.0%
GGAAGCAAGAATCTGGATAT+GGG - chr3_3:20511800-20511819 Msa0445750:intron 40.0%
TATGGGAGGAAAACTAGCTA+TGG - chr3_3:20512009-20512028 Msa0445750:intron 40.0%
TATGAGAGGAAACCTAGCTA+TGG - chr3_3:20512075-20512094 Msa0445750:intron 40.0%
TATGGGAGGAAAACTAGCTA+TGG - chr3_3:20512009-20512028 Msa0445750:intron 40.0%
! GATGATGATGATGAGGGATA+TGG - chr3_3:20512264-20512283 Msa0445750:intron 40.0%
TATCCTACTTAGGATCGGAA+GGG + chr3_3:20512555-20512574 None:intergenic 40.0%
ATATCCTACTTAGGATCGGA+AGG + chr3_3:20512556-20512575 None:intergenic 40.0%
ACTATTGTCTAGTAGGCAAG+GGG + chr3_3:20512655-20512674 None:intergenic 40.0%
CACTATTGTCTAGTAGGCAA+GGG + chr3_3:20512656-20512675 None:intergenic 40.0%
ACACTATTGTCTAGTAGGCA+AGG + chr3_3:20512657-20512676 None:intergenic 40.0%
GGAGTACACTATTGTCTAGT+AGG + chr3_3:20512662-20512681 None:intergenic 40.0%
TCCATAGTTGCATTGCATAG+TGG - chr3_3:20513004-20513023 Msa0445750:intron 40.0%
TCCACTATGCAATGCAACTA+TGG + chr3_3:20513008-20513027 None:intergenic 40.0%
ACAAGAGCTTCCCTATATAG+CGG + chr3_3:20513076-20513095 None:intergenic 40.0%
ATGTCAGCTATCATGTAGTG+TGG + chr3_3:20513277-20513296 None:intergenic 40.0%
GAATGAATGGGAATGGGAAT+GGG + chr3_3:20513761-20513780 None:intergenic 40.0%
AGAATGAATGGGAATGGGAA+TGG + chr3_3:20513762-20513781 None:intergenic 40.0%
! CCTAAAGGGCATGTTTGTAT+TGG + chr3_3:20513796-20513815 None:intergenic 40.0%
CCAATACAAACATGCCCTTT+AGG - chr3_3:20513793-20513812 Msa0445750:CDS 40.0%
TAAGAAACCGCAAGCCTAAA+GGG + chr3_3:20513810-20513829 None:intergenic 40.0%
TTAAGAAACCGCAAGCCTAA+AGG + chr3_3:20513811-20513830 None:intergenic 40.0%
ACTCGTCATCATAACTCTTG+CGG + chr3_3:20514246-20514265 None:intergenic 40.0%
TTAGCAGGCAATATCATACC+AGG + chr3_3:20514519-20514538 None:intergenic 40.0%
!! GTTTGTTATAAGCAGGAGTG+AGG - chr3_3:20514605-20514624 Msa0445750:CDS 40.0%
! AGCAGGAGTGAGGTAATTTT+AGG - chr3_3:20514615-20514634 Msa0445750:CDS 40.0%
ATGTCATACTTCACTCGTGG+CGG - chr3_3:20511163-20511182 Msa0445750:three_prime_UTR 45.0%
! GAATTGGTCTACCGTAGGTA+AGG + chr3_3:20511261-20511280 None:intergenic 45.0%
GTTTCATCGGAAGGTGGAAT+TGG + chr3_3:20511277-20511296 None:intergenic 45.0%
GGGTAACATGTTTCATCGGA+AGG + chr3_3:20511286-20511305 None:intergenic 45.0%
GCTTCATCACCATAAGCAGA+AGG + chr3_3:20511370-20511389 None:intergenic 45.0%
! GGTTTTCATCCTGAATCTGG+TGG - chr3_3:20511445-20511464 Msa0445750:three_prime_UTR 45.0%
TTTCATCCTGAATCTGGTGG+TGG - chr3_3:20511448-20511467 Msa0445750:three_prime_UTR 45.0%
TATGGGAGGAAACAAGGATC+TGG - chr3_3:20511484-20511503 Msa0445750:three_prime_UTR 45.0%
ATGGGAGGAAACAAGGATCT+GGG - chr3_3:20511485-20511504 Msa0445750:three_prime_UTR 45.0%
AGGAAACAAGGATCTGGGTA+TGG - chr3_3:20511490-20511509 Msa0445750:three_prime_UTR 45.0%
AAACAAGGATCTGGGTATGG+TGG - chr3_3:20511493-20511512 Msa0445750:three_prime_UTR 45.0%
GAAATTGGATCTGGGTATGG+TGG - chr3_3:20511526-20511545 Msa0445750:three_prime_UTR 45.0%
AGGAAGCAAGAGGGTGAATA+TGG - chr3_3:20511550-20511569 Msa0445750:three_prime_UTR 45.0%
CAAGAGGGTGAATATGGATC+TGG - chr3_3:20511556-20511575 Msa0445750:three_prime_UTR 45.0%
GGTGAATATGGATCTGGGTA+TGG - chr3_3:20511562-20511581 Msa0445750:three_prime_UTR 45.0%
GAATATGGATCTGGGTATGG+TGG - chr3_3:20511565-20511584 Msa0445750:three_prime_UTR 45.0%
AGATCCATATTCACCCTCCT+GGG + chr3_3:20511599-20511618 None:intergenic 45.0%
AGGAGGGTGAATATGGATCT+GGG - chr3_3:20511599-20511618 Msa0445750:exon 45.0%
GGTGAATATGGATCTGGGTA+TGG - chr3_3:20511562-20511581 Msa0445750:three_prime_UTR 45.0%
GAATATGGATCTGGGTATGG+TGG - chr3_3:20511565-20511584 Msa0445750:three_prime_UTR 45.0%
TGGGTATGGGAGAAAGAATG+AGG - chr3_3:20511657-20511676 Msa0445750:CDS 45.0%
GAGGAAAGTGAATATGGGTC+TGG - chr3_3:20511676-20511695 Msa0445750:CDS 45.0%
GAATATGGGTCTGGTTATGG+AGG - chr3_3:20511685-20511704 Msa0445750:intron 45.0%
GCAAGAATCAGGATATGGTG+GGG - chr3_3:20511714-20511733 Msa0445750:intron 45.0%
TCTCCCATATTCAGACTCCT+GGG + chr3_3:20511740-20511759 None:intergenic 45.0%
TTCTCCCATATTCAGACTCC+TGG + chr3_3:20511741-20511760 None:intergenic 45.0%
GAGGAAAGTGATTATGGGTC+TGG - chr3_3:20511766-20511785 Msa0445750:intron 45.0%
GATTATGGGTCTGGTTATGG+TGG - chr3_3:20511775-20511794 Msa0445750:intron 45.0%
CAAGAATCTGGATATGGGTC+TGG - chr3_3:20511805-20511824 Msa0445750:intron 45.0%
TCTGGATATGGGTCTGGATA+TGG - chr3_3:20511811-20511830 Msa0445750:intron 45.0%
GATATGGGTCTGGATATGGT+GGG - chr3_3:20511815-20511834 Msa0445750:intron 45.0%
! ATATGGTGGGAGGAAGAATG+AGG - chr3_3:20511828-20511847 Msa0445750:intron 45.0%
AAGAATGAGGAGGAGAGTGA+GGG - chr3_3:20511841-20511860 Msa0445750:intron 45.0%
TTATGGGAGGAAGAATGAGG+AGG - chr3_3:20511864-20511883 Msa0445750:intron 45.0%
AAGAATGAGGAGGAGAGTGA+GGG - chr3_3:20511841-20511860 Msa0445750:intron 45.0%
GGAGGAAGAAGAGTGGTTAT+GGG - chr3_3:20511902-20511921 Msa0445750:intron 45.0%
GAGGAAGAAGAGTGGTTATG+GGG - chr3_3:20511903-20511922 Msa0445750:intron 45.0%
TATGAGAGGAAGCCTAGCTA+TGG - chr3_3:20511958-20511977 Msa0445750:intron 45.0%
!! CTAGTTTTCCTCCCATAGCT+CGG + chr3_3:20512006-20512025 None:intergenic 45.0%
GGAGGAAAACTAGCTATGGA+CGG - chr3_3:20512013-20512032 Msa0445750:intron 45.0%
AGAGGAAACCTAGCTATGGA+AGG - chr3_3:20512079-20512098 Msa0445750:intron 45.0%
TCATCACTCCTTCCATAGCT+AGG + chr3_3:20512090-20512109 None:intergenic 45.0%
! CTATGGAAGGAGTGATGATG+AGG - chr3_3:20512092-20512111 Msa0445750:intron 45.0%
ATGAGGAGAAGCCAAGCTAT+GGG - chr3_3:20512109-20512128 Msa0445750:intron 45.0%
TACGAGAGGAAACCTAGCTA+TGG - chr3_3:20512144-20512163 Msa0445750:intron 45.0%
AGAGGAAACCTAGCTATGGA+AGG - chr3_3:20512079-20512098 Msa0445750:intron 45.0%
TCATCACTCCTTCCATAGCT+AGG + chr3_3:20512090-20512109 None:intergenic 45.0%
! CTATGGAAGGAGTGATGATG+AGG - chr3_3:20512092-20512111 Msa0445750:intron 45.0%
!! CTAGTTTTCCTCCCATAGCT+CGG + chr3_3:20512006-20512025 None:intergenic 45.0%
GGAGGAAAACTAGCTATGGA+AGG - chr3_3:20512013-20512032 Msa0445750:intron 45.0%
! CTATGGAAGGAGTGATGATG+AGG - chr3_3:20512092-20512111 Msa0445750:intron 45.0%
AACCGAGCTATGGTTATGAG+AGG - chr3_3:20512238-20512257 Msa0445750:intron 45.0%
! AGGCGTGATGATGATGATGA+GGG - chr3_3:20512258-20512277 Msa0445750:intron 45.0%
ATCCTACTTAGGATCGGAAG+GGG + chr3_3:20512554-20512573 None:intergenic 45.0%
CTATTGTCTAGTAGGCAAGG+GGG + chr3_3:20512654-20512673 None:intergenic 45.0%
! TGCTGCAATTGAAGAGTGTG+TGG + chr3_3:20512890-20512909 None:intergenic 45.0%
!! TGCATTGCATAGTGGATCCT+AGG - chr3_3:20513012-20513031 Msa0445750:intron 45.0%
AACTGTAGCGACCGCTATAT+AGG - chr3_3:20513062-20513081 Msa0445750:intron 45.0%
ACTGTAGCGACCGCTATATA+GGG - chr3_3:20513063-20513082 Msa0445750:intron 45.0%
GGCAAATTGGGGTTAAGGAA+TGG + chr3_3:20513698-20513717 None:intergenic 45.0%
TTCTCGGCAAATTGGGGTTA+AGG + chr3_3:20513703-20513722 None:intergenic 45.0%
ATGGGAATGGGAATGGGAAT+GGG + chr3_3:20513755-20513774 None:intergenic 45.0%
AATGGGAATGGGAATGGGAA+TGG + chr3_3:20513756-20513775 None:intergenic 45.0%
AAACATGCCCTTTAGGCTTG+CGG - chr3_3:20513800-20513819 Msa0445750:CDS 45.0%
! ATGATGTTTTCGTACGACGC+AGG - chr3_3:20514159-20514178 Msa0445750:CDS 45.0%
! TGATGTTTTCGTACGACGCA+GGG - chr3_3:20514160-20514179 Msa0445750:CDS 45.0%
!! GACTGTCGTTGCTGTTTGAA+TGG - chr3_3:20514275-20514294 Msa0445750:CDS 45.0%
AACAAGCATGGTGCATCTGT+GGG + chr3_3:20514547-20514566 None:intergenic 45.0%
AAACAAGCATGGTGCATCTG+TGG + chr3_3:20514548-20514567 None:intergenic 45.0%
! TACTTCACTCGTGGCGGAAA+CGG - chr3_3:20511169-20511188 Msa0445750:three_prime_UTR 50.0%
TACGATCCAACACCATACGG+TGG - chr3_3:20511220-20511239 Msa0445750:three_prime_UTR 50.0%
TATCCACCACCGTATGGTGT+TGG + chr3_3:20511229-20511248 None:intergenic 50.0%
ATGTCGTATCCACCACCGTA+TGG + chr3_3:20511235-20511254 None:intergenic 50.0%
! AGGTGGAATTGGTCTACCGT+AGG + chr3_3:20511266-20511285 None:intergenic 50.0%
CTAGGAGCAGGTCTAGGTTT+AGG + chr3_3:20511424-20511443 None:intergenic 50.0%
AAACCTAGACCTGCTCCTAG+TGG - chr3_3:20511424-20511443 Msa0445750:three_prime_UTR 50.0%
AAACCACTAGGAGCAGGTCT+AGG + chr3_3:20511430-20511449 None:intergenic 50.0%
GGATGAAAACCACTAGGAGC+AGG + chr3_3:20511436-20511455 None:intergenic 50.0%
! TATGGTGGGAGGAAGCAAGA+GGG - chr3_3:20511541-20511560 Msa0445750:three_prime_UTR 50.0%
TATGGATCTGGGTATGGTGG+TGG - chr3_3:20511568-20511587 Msa0445750:three_prime_UTR 50.0%
CAGATCCATATTCACCCTCC+TGG + chr3_3:20511600-20511619 None:intergenic 50.0%
CAGGAGGGTGAATATGGATC+TGG - chr3_3:20511598-20511617 Msa0445750:exon 50.0%
! ATGGATCTGGGTATGGTGGA+AGG - chr3_3:20511611-20511630 Msa0445750:exon 50.0%
ATGGGTCTGGTTATGGAGGA+AGG - chr3_3:20511689-20511708 Msa0445750:intron 50.0%
GGAGGAAGGAAGCAAGAATC+AGG - chr3_3:20511703-20511722 Msa0445750:intron 50.0%
GGATATGGGTCTGGATATGG+TGG - chr3_3:20511814-20511833 Msa0445750:intron 50.0%
GAAGAATGAGGAGGAGAGTG+AGG - chr3_3:20511840-20511859 Msa0445750:intron 50.0%
AGGAGGAGAGTGAGGGTTAT+GGG - chr3_3:20511848-20511867 Msa0445750:intron 50.0%
GGGTTATGGGAGGAAGAATG+AGG - chr3_3:20511861-20511880 Msa0445750:intron 50.0%
GAAGAATGAGGAGGAGAGTG+AGG - chr3_3:20511840-20511859 Msa0445750:intron 50.0%
AGGAGGAGAGTGAGGGTTAT+GGG - chr3_3:20511848-20511867 Msa0445750:intron 50.0%
GGTTATGGGAGGAAGAAGAG+TGG - chr3_3:20511895-20511914 Msa0445750:intron 50.0%
GGGAGGAAGAAGAGTGGTTA+TGG - chr3_3:20511901-20511920 Msa0445750:intron 50.0%
GAAGAAGAGTGGTTATGGGG+AGG - chr3_3:20511906-20511925 Msa0445750:intron 50.0%
AGTGGTTATGGGGAGGAAGA+AGG - chr3_3:20511913-20511932 Msa0445750:intron 50.0%
GTGGTTATGGGGAGGAAGAA+GGG - chr3_3:20511914-20511933 Msa0445750:intron 50.0%
TATGGGGAGGAAGAAGGGTA+TGG - chr3_3:20511919-20511938 Msa0445750:intron 50.0%
! AGGAAGAAGGGTATGGAGGA+GGG - chr3_3:20511926-20511945 Msa0445750:intron 50.0%
AGAGGAAGCCTAGCTATGGA+AGG - chr3_3:20511962-20511981 Msa0445750:intron 50.0%
TCGTCACTCCTTCCATAGCT+AGG + chr3_3:20511973-20511992 None:intergenic 50.0%
CTATGGAAGGAGTGACGATG+AGG - chr3_3:20511975-20511994 Msa0445750:intron 50.0%
ATGAGGAGAAGCCGAGCTAT+GGG - chr3_3:20511992-20512011 Msa0445750:intron 50.0%
TAGCTATGGACGGAGTGATG+AGG - chr3_3:20512023-20512042 Msa0445750:intron 50.0%
TACTCAGTCCTCCCATAGCT+CGG + chr3_3:20512057-20512076 None:intergenic 50.0%
ATGGGAGGACTGAGTATGAG+AGG - chr3_3:20512061-20512080 Msa0445750:intron 50.0%
GATGAGGAGAAGCCAAGCTA+TGG - chr3_3:20512108-20512127 Msa0445750:intron 50.0%
ATGAGGAGAAGCCGAGCTAT+GGG - chr3_3:20511992-20512011 Msa0445750:intron 50.0%
GATGAGGAGAAACCGAGCTA+TGG - chr3_3:20512228-20512247 Msa0445750:intron 50.0%
CGCCTCTCATAACCATAGCT+CGG + chr3_3:20512243-20512262 None:intergenic 50.0%
! GAGGCGTGATGATGATGATG+AGG - chr3_3:20512257-20512276 Msa0445750:intron 50.0%
! GGGCTGTAACTTGTCACACA+AGG + chr3_3:20512534-20512553 None:intergenic 50.0%
! TGAAGGCTCCGATGATGATG+AGG - chr3_3:20514189-20514208 Msa0445750:CDS 50.0%
! GAAGGCTCCGATGATGATGA+GGG - chr3_3:20514190-20514209 Msa0445750:CDS 50.0%
! AAGGCTCCGATGATGATGAG+GGG - chr3_3:20514191-20514210 Msa0445750:CDS 50.0%
CTTCCTCCCCTCATCATCAT+CGG + chr3_3:20514200-20514219 None:intergenic 50.0%
CGTCATCATAACTCTTGCGG+TGG + chr3_3:20514243-20514262 None:intergenic 50.0%
CATCTGTGGGATGCATTAGC+AGG + chr3_3:20514534-20514553 None:intergenic 50.0%
GATCCAACACCATACGGTGG+TGG - chr3_3:20511223-20511242 Msa0445750:three_prime_UTR 55.0%
!! CATCCTGAATCTGGTGGTGG+TGG - chr3_3:20511451-20511470 Msa0445750:three_prime_UTR 55.0%
GGTGGGTATGGGAGGAAACA+AGG - chr3_3:20511478-20511497 Msa0445750:three_prime_UTR 55.0%
! TTGGATCTGGGTATGGTGGG+AGG - chr3_3:20511530-20511549 Msa0445750:three_prime_UTR 55.0%
! GTATGGTGGGAGGAAGCAAG+AGG - chr3_3:20511540-20511559 Msa0445750:three_prime_UTR 55.0%
!! GATCTGGGTATGGTGGTGGT+GGG - chr3_3:20511572-20511591 Msa0445750:three_prime_UTR 55.0%
!! ATCTGGGTATGGTGGTGGTG+GGG - chr3_3:20511573-20511592 Msa0445750:three_prime_UTR 55.0%
GGGCCCAGGAGTCTGAATAT+GGG - chr3_3:20511734-20511753 Msa0445750:intron 55.0%
! ATGGGTCTGGTTATGGTGGG+AGG - chr3_3:20511779-20511798 Msa0445750:intron 55.0%
GGTGGGAGGAAGCAAGAATC+TGG - chr3_3:20511793-20511812 Msa0445750:intron 55.0%
! ATGGGTCTGGATATGGTGGG+AGG - chr3_3:20511818-20511837 Msa0445750:intron 55.0%
TGGTGGGAGGAAGAATGAGG+AGG - chr3_3:20511831-20511850 Msa0445750:intron 55.0%
GAGGAGGAGAGTGAGGGTTA+TGG - chr3_3:20511847-20511866 Msa0445750:intron 55.0%
AGGAGAGTGAGGGTTATGGG+AGG - chr3_3:20511851-20511870 Msa0445750:intron 55.0%
GAGGAGGAGAGTGAGGGTTA+TGG - chr3_3:20511847-20511866 Msa0445750:intron 55.0%
AGGAGAGTGAGGGTTATGGG+AGG - chr3_3:20511851-20511870 Msa0445750:intron 55.0%
! GAGGAAGAAGGGTATGGAGG+AGG - chr3_3:20511925-20511944 Msa0445750:intron 55.0%
! AAGAAGGGTATGGAGGAGGG+AGG - chr3_3:20511929-20511948 Msa0445750:intron 55.0%
GAGGGAGGAGTGAGTATGAG+AGG - chr3_3:20511944-20511963 Msa0445750:intron 55.0%
GATGAGGAGAAGCCGAGCTA+TGG - chr3_3:20511991-20512010 Msa0445750:intron 55.0%
CTATGGACGGAGTGATGAGG+AGG - chr3_3:20512026-20512045 Msa0445750:intron 55.0%
AGGAGGAGAAGCCGAGCTAT+GGG - chr3_3:20512043-20512062 Msa0445750:intron 55.0%
AGGAGAAGCCAAGCTATGGG+AGG - chr3_3:20512112-20512131 Msa0445750:intron 55.0%
TCAGCAGTCCTCCCATAGCT+TGG + chr3_3:20512123-20512142 None:intergenic 55.0%
GATGAGGAGAAGCCGAGCTA+TGG - chr3_3:20511991-20512010 Msa0445750:intron 55.0%
AGCCCCTTCCGATCCTAAGT+AGG - chr3_3:20512549-20512568 Msa0445750:intron 55.0%
! AACGGGTTCGTGTAGCACCT+AGG + chr3_3:20513032-20513051 None:intergenic 55.0%
! TGTTTTCGTACGACGCAGGG+AGG - chr3_3:20514163-20514182 Msa0445750:CDS 55.0%
TCTTGCGGTGGTGACTCTTG+TGG + chr3_3:20514231-20514250 None:intergenic 55.0%
CCACCACCACCACCAGATTC+AGG + chr3_3:20511457-20511476 None:intergenic 60.0%
!! CCTGAATCTGGTGGTGGTGG+TGG - chr3_3:20511454-20511473 Msa0445750:three_prime_UTR 60.0%
!! GAATCTGGTGGTGGTGGTGG+TGG - chr3_3:20511457-20511476 Msa0445750:three_prime_UTR 60.0%
!! GTGGTGGTGGTGGTGGGTAT+GGG - chr3_3:20511467-20511486 Msa0445750:three_prime_UTR 60.0%
!! GGATCTGGGTATGGTGGTGG+TGG - chr3_3:20511571-20511590 Msa0445750:three_prime_UTR 60.0%
! ATCAGGATATGGTGGGGCCC+AGG - chr3_3:20511720-20511739 Msa0445750:intron 60.0%
GGGGCCCAGGAGTCTGAATA+TGG - chr3_3:20511733-20511752 Msa0445750:intron 60.0%
! GGGGAGGAAGAAGGGTATGG+AGG - chr3_3:20511922-20511941 Msa0445750:intron 60.0%
AGGAGAAGCCGAGCTATGGG+AGG - chr3_3:20511995-20512014 Msa0445750:intron 60.0%
GAGGAGGAGAAGCCGAGCTA+TGG - chr3_3:20512042-20512061 Msa0445750:intron 60.0%
AGGAGAAGCCGAGCTATGGG+AGG - chr3_3:20511995-20512014 Msa0445750:intron 60.0%
GGAGGACTGCTGAGTACGAG+AGG - chr3_3:20512130-20512149 Msa0445750:intron 60.0%
AGGAGAAGCCGAGCTATGGG+AGG - chr3_3:20511995-20512014 Msa0445750:intron 60.0%
ACGACGCAGGGAGGAGATGA+AGG - chr3_3:20514172-20514191 Msa0445750:CDS 60.0%
! GCTCCGATGATGATGAGGGG+AGG - chr3_3:20514194-20514213 Msa0445750:CDS 60.0%
!! TCTGGTGGTGGTGGTGGTGG+TGG - chr3_3:20511460-20511479 Msa0445750:three_prime_UTR 65.0%
!! CTGGTGGTGGTGGTGGTGGT+GGG - chr3_3:20511461-20511480 Msa0445750:three_prime_UTR 65.0%
!! GGTGGTGGTGGTGGTGGGTA+TGG - chr3_3:20511466-20511485 Msa0445750:three_prime_UTR 65.0%
!! GTGGTGGTGGTGGGTATGGG+AGG - chr3_3:20511470-20511489 Msa0445750:three_prime_UTR 65.0%
GGGGCCCAGGAGGGTGAATA+TGG - chr3_3:20511592-20511611 Msa0445750:three_prime_UTR 65.0%
!! GTATGGTGGTGGTGGGGCCC+AGG - chr3_3:20511579-20511598 Msa0445750:three_prime_UTR 70.0%
!! TGGTGGTGGTGGGGCCCAGG+AGG - chr3_3:20511582-20511601 Msa0445750:three_prime_UTR 75.0%
!! GGTGGTGGTGGGGCCCAGGA+GGG - chr3_3:20511583-20511602 Msa0445750:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 20511163 20514720 20511163 ID=Msa0445750;Name=Msa0445750
chr3_3 mRNA 20511163 20514720 20511163 ID=Msa0445750-mRNA-1;Parent=Msa0445750;Name=Msa0445750-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|453|407
chr3_3 exon 20511163 20511702 20511163 ID=Msa0445750-mRNA-1:exon:4290;Parent=Msa0445750-mRNA-1
chr3_3 exon 20513584 20514720 20513584 ID=Msa0445750-mRNA-1:exon:4289;Parent=Msa0445750-mRNA-1
chr3_3 CDS 20513584 20514720 20513584 ID=Msa0445750-mRNA-1:cds;Parent=Msa0445750-mRNA-1
chr3_3 CDS 20511616 20511702 20511616 ID=Msa0445750-mRNA-1:cds;Parent=Msa0445750-mRNA-1
chr3_3 three_prime_UTR 20511163 20511615 20511163 ID=Msa0445750-mRNA-1:three_prime_utr;Parent=Msa0445750-mRNA-1
Gene Sequence

>Msa0445750

ATGTCATACTTCACTCGTGGCGGAAACGGCGACGAAAGCGTCGACGATTTCGACGAATACGATCCAACACCATACGGTGGTGGATACGACATTCACCTTACCTACGGTAGACCAATTCCACCTTCCGATGAAACATGTTACCCATCAGGTTCATCAAACAATGATTTTGATTATGATCGTCCTCAATTTGAATCTTATGCTCAACCTTCTGCTTATGGTGATGAAGCTCTTGCTACTGAGTATAGTAGCTATTCTAGACCTAAACCTAGACCTGCTCCTAGTGGTTTTCATCCTGAATCTGGTGGTGGTGGTGGTGGTGGGTATGGGAGGAAACAAGGATCTGGGTATGGTGGTCAAGAATCTGAAATTGGATCTGGGTATGGTGGGAGGAAGCAAGAGGGTGAATATGGATCTGGGTATGGTGGTGGTGGGGCCCAGGAGGGTGAATATGGATCTGGGTATGGTGGAAGGAAGCAAGATTCTGAATTTGGATCTGGGTATGGGAGAAAGAATGAGGAAAGTGAATATGGGTCTGGTTATGGAGGAAGGAAGCAAGAATCAGGATATGGTGGGGCCCAGGAGTCTGAATATGGGAGAAAGAATGAGGAAAGTGATTATGGGTCTGGTTATGGTGGGAGGAAGCAAGAATCTGGATATGGGTCTGGATATGGTGGGAGGAAGAATGAGGAGGAGAGTGAGGGTTATGGGAGGAAGAATGAGGAGGAGAGTGAGGGTTATGGGAGGAAGAAGAGTGGTTATGGGGAGGAAGAAGGGTATGGAGGAGGGAGGAGTGAGTATGAGAGGAAGCCTAGCTATGGAAGGAGTGACGATGAGGAGAAGCCGAGCTATGGGAGGAAAACTAGCTATGGACGGAGTGATGAGGAGGAGAAGCCGAGCTATGGGAGGACTGAGTATGAGAGGAAACCTAGCTATGGAAGGAGTGATGATGAGGAGAAGCCAAGCTATGGGAGGACTGCTGAGTACGAGAGGAAACCTAGCTATGGAAGGAGTGATGATGAGGAGAAGCCGAGCTATGGGAGGAAAACTAGCTATGGAAGGAGTGATGATGAGGAGAAACCGAGCTATGGTTATGAGAGGCGTGATGATGATGATGAGGGATATGGTCGTAAGAAATATGGAGGAGATGAAGGCTCCGATGATGATGAGGGGAGGAAGAAGCATCACCACAAGAGTCACCACCGCAAGAGTTATGATGACGAGTAA
Protein sequence

>Msa0445750

MSYFTRGGNGDESVDDFDEYDPTPYGGGYDIHLTYGRPIPPSDETCYPSGSSNNDFDYDRPQFESYAQPSAYGDEALATEYSSYSRPKPRPAPSGFHPESGGGGGGGYGRKQGSGYGGQESEIGSGYGGRKQEGEYGSGYGGGGAQEGEYGSGYGGRKQDSEFGSGYGRKNEESEYGSGYGGRKQESGYGGAQESEYGRKNEESDYGSGYGGRKQESGYGSGYGGRKNEEESEGYGRKNEEESEGYGRKKSGYGEEEGYGGGRSEYERKPSYGRSDDEEKPSYGRKTSYGRSDEEEKPSYGRTEYERKPSYGRSDDEEKPSYGRTAEYERKPSYGRSDDEEKPSYGRKTSYGRSDDEEKPSYGYERRDDDDEGYGRKKYGGDEGSDDDEGRKKHHHKSHHRKSYDDE*