AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1440830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440830 MtrunA17_Chr6g0453531 78.199 422 27 8 1 407 1 372 6.33e-155 442
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440830 AT3G29075.1 55.245 143 44 5 1 142 1 124 1.31e-33 127
Msa1440830 AT1G11440.1 56.000 50 22 0 3 52 117 166 1.24e-11 66.2

Find 204 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTATTTAGTAGGTAATTA+TGG 0.163812 tig0029127:+13437 None:intergenic
AGGAAGCAAGATTCTGAATT+TGG 0.188299 tig0029127:-16114 Msa1440830:CDS
AAGAATGAGGAAAGTGATTA+TGG 0.218432 tig0029127:-15985 Msa1440830:CDS
AGAGCAACATTAACCTATTA+AGG 0.236673 tig0029127:-13082 Msa1440830:three_prime_UTR
AAGAATGAGGAAAGTGAATA+TGG 0.238375 tig0029127:-16075 Msa1440830:CDS
CATAATTACCTACTAAATAA+AGG 0.239439 tig0029127:-13436 Msa1440830:three_prime_UTR
CTGCTTATAACAAACTTCTT+TGG 0.255755 tig0029127:+13146 None:intergenic
GGGGCCCAGGAGTCTGAATA+TGG 0.261491 tig0029127:-16012 Msa1440830:CDS
AGGAGGAGAGTGAGGGTTAT+GGG 0.265325 tig0029127:-15864 Msa1440830:CDS
AGGAGGAGAGTGAGGGTTAT+GGG 0.265325 tig0029127:-15897 Msa1440830:CDS
TGATATCTTCCTTTCTTGTT+TGG 0.267494 tig0029127:-13399 Msa1440830:three_prime_UTR
TATGCTCAACCTTCTGCTTA+TGG 0.272182 tig0029127:-16387 Msa1440830:CDS
GAGGAGGAGAGTGAGGGTTA+TGG 0.279009 tig0029127:-15865 Msa1440830:CDS
GAGGAGGAGAGTGAGGGTTA+TGG 0.279009 tig0029127:-15898 Msa1440830:CDS
TTCTCCCATATTCAGACTCC+TGG 0.294396 tig0029127:+16007 None:intergenic
GGGGCCCAGGAGGGTGAATA+TGG 0.303637 tig0029127:-16153 Msa1440830:CDS
GGATCTGGGTATGGTGGTGG+TGG 0.312300 tig0029127:-16174 Msa1440830:CDS
TCTTGAGCTTTCAGAACTAT+TGG 0.315272 tig0029127:-13362 Msa1440830:three_prime_UTR
GGGAGGAAGAAGAGTGGTTA+TGG 0.316323 tig0029127:-15844 Msa1440830:CDS
GCATCTAATACAACCTTAAT+AGG 0.317590 tig0029127:+13069 None:intergenic
AGGAAGCAAGAGGGTGAATA+TGG 0.323037 tig0029127:-16195 Msa1440830:CDS
AGGAAGCAAGAATCTGGATA+TGG 0.323483 tig0029127:-15946 Msa1440830:CDS
TTACACTATTTCTCTCTGTT+TGG 0.329174 tig0029127:-13271 Msa1440830:three_prime_UTR
GAGGAAGAAGGGTATGGAGG+AGG 0.335243 tig0029127:-15820 Msa1440830:CDS
CAAGATTCTGAATTTGGATC+TGG 0.338180 tig0029127:-16108 Msa1440830:CDS
CAAGAATCTGAAATTGGATC+TGG 0.346947 tig0029127:-16228 Msa1440830:CDS
GTGGTGGTGGTGGGTATGGG+AGG 0.347122 tig0029127:-16275 Msa1440830:CDS
GTATGGTGGTGGTGGGGCCC+AGG 0.347593 tig0029127:-16166 Msa1440830:CDS
AAACTAAATGTATTGCTGTT+TGG 0.348124 tig0029127:-13336 Msa1440830:three_prime_UTR
TCTGGATATGGGTCTGGATA+TGG 0.349878 tig0029127:-15934 Msa1440830:CDS
AGTGAATATGGGTCTGGTTA+TGG 0.355805 tig0029127:-16063 Msa1440830:CDS
TTTATTTAGTAGGTAATTAT+GGG 0.359554 tig0029127:+13438 None:intergenic
AACACAACAACTCAAACATT+AGG 0.363929 tig0029127:+13292 None:intergenic
TGGTGGTGGTGGGGCCCAGG+AGG 0.366945 tig0029127:-16163 Msa1440830:CDS
GGTGGTCAAGAATCTGAAAT+TGG 0.368013 tig0029127:-16234 Msa1440830:CDS
AGTGATTATGGGTCTGGTTA+TGG 0.375957 tig0029127:-15973 Msa1440830:CDS
CTAGGAGCAGGTCTAGGTTT+AGG 0.380180 tig0029127:+16324 None:intergenic
ATCTGGGTATGGTGGTGGTG+GGG 0.380832 tig0029127:-16172 Msa1440830:CDS
GGAGGAAGAAGAGTGGTTAT+GGG 0.380985 tig0029127:-15843 Msa1440830:CDS
GTTTCATCGGAAGGTGGAAT+TGG 0.386796 tig0029127:+16471 None:intergenic
CAAGAGGGTGAATATGGATC+TGG 0.396904 tig0029127:-16189 Msa1440830:CDS
GAGTCAACCCTTTATTTAGT+AGG 0.398541 tig0029127:+13428 None:intergenic
ACACAACAACTCAAACATTA+GGG 0.410366 tig0029127:+13293 None:intergenic
GGGGAGGAAGAAGGGTATGG+AGG 0.410870 tig0029127:-15823 Msa1440830:CDS
CAAAGAAGTTTGTTATAAGC+AGG 0.415186 tig0029127:-13145 Msa1440830:three_prime_UTR
GGTGGGAGGAAGCAAGAATC+TGG 0.415415 tig0029127:-15952 Msa1440830:CDS
CCTGAATCTGGTGGTGGTGG+TGG 0.415997 tig0029127:-16291 Msa1440830:CDS
GATCTGGGTATGGTGGTGGT+GGG 0.416482 tig0029127:-16173 Msa1440830:CDS
AGTGGTTATGGGGAGGAAGA+AGG 0.417130 tig0029127:-15832 Msa1440830:CDS
TATGGATCTGGGTATGGTGG+TGG 0.422719 tig0029127:-16177 Msa1440830:CDS
AGGAAGAAGGGTATGGAGGA+GGG 0.425811 tig0029127:-15819 Msa1440830:CDS
CAGGAGGGTGAATATGGATC+TGG 0.427850 tig0029127:-16147 Msa1440830:CDS
TCTGAATTTGGATCTGGGTA+TGG 0.428612 tig0029127:-16102 Msa1440830:CDS
GGAGGAAGGAAGCAAGAATC+AGG 0.431165 tig0029127:-16042 Msa1440830:CDS
GAAGAATGAGGAGGAGAGTG+AGG 0.433066 tig0029127:-15872 Msa1440830:CDS
GAAGAATGAGGAGGAGAGTG+AGG 0.433066 tig0029127:-15905 Msa1440830:CDS
ATAATTACCTACTAAATAAA+GGG 0.436075 tig0029127:-13435 Msa1440830:three_prime_UTR
GACTGTCGTTGCTGTTTGAA+TGG 0.441452 tig0029127:-13468 Msa1440830:three_prime_UTR
AGGAAGCAAGAATCAGGATA+TGG 0.443503 tig0029127:-16036 Msa1440830:CDS
GTGGTTATGGGGAGGAAGAA+GGG 0.452123 tig0029127:-15831 Msa1440830:CDS
GAGGAAAGTGATTATGGGTC+TGG 0.452777 tig0029127:-15979 Msa1440830:CDS
GGTGGTGGTGGGGCCCAGGA+GGG 0.455266 tig0029127:-16162 Msa1440830:CDS
CAGATCCATATTCACCCTCC+TGG 0.458005 tig0029127:+16148 None:intergenic
GAGGAGGAGAAGCCGAGCTA+TGG 0.460470 tig0029127:-15703 Msa1440830:CDS
TATGGGAGGAAACAAGGATC+TGG 0.464076 tig0029127:-16261 Msa1440830:CDS
CATCTGTGGGATGCATTAGC+AGG 0.466729 tig0029127:+13212 None:intergenic
ATGGGTCTGGTTATGGAGGA+AGG 0.469449 tig0029127:-16056 Msa1440830:CDS
CTGAATTTGGATCTGGGTAT+GGG 0.471206 tig0029127:-16101 Msa1440830:CDS
GATGAGGAGAAGCCGAGCTA+TGG 0.471950 tig0029127:-15568 Msa1440830:CDS
CAAGAATCTGGATATGGGTC+TGG 0.473527 tig0029127:-15940 Msa1440830:CDS
GATGAGGAGAAGCCGAGCTA+TGG 0.479965 tig0029127:-15754 Msa1440830:CDS
TGAGCATAAGATTCAAATTG+AGG 0.480996 tig0029127:+16402 None:intergenic
TACTTCACTCGTGGCGGAAA+CGG 0.482929 tig0029127:-16576 Msa1440830:CDS
AGAATGAGGAAAGTGATTAT+GGG 0.485627 tig0029127:-15984 Msa1440830:CDS
TTGTATTAGATGCACTTTGA+GGG 0.486368 tig0029127:-13059 Msa1440830:three_prime_UTR
GATGAGGAGAAGCCAAGCTA+TGG 0.490330 tig0029127:-15637 Msa1440830:CDS
GATGAAACATGTTACCCATC+AGG 0.490672 tig0029127:-16456 Msa1440830:CDS
GGTGAATATGGATCTGGGTA+TGG 0.490996 tig0029127:-16141 Msa1440830:CDS
GAATATGGATCTGGGTATGG+TGG 0.492676 tig0029127:-16180 Msa1440830:CDS
AGGAGGAGAAGCCGAGCTAT+GGG 0.492768 tig0029127:-15702 Msa1440830:CDS
GATGATGATGATGAGGGATA+TGG 0.494555 tig0029127:-15481 Msa1440830:CDS
GAGGGAGGAGTGAGTATGAG+AGG 0.495733 tig0029127:-15801 Msa1440830:CDS
ATGGATCTGGGTATGGTGGA+AGG 0.498189 tig0029127:-16134 Msa1440830:CDS
GAGGAAAGTGAATATGGGTC+TGG 0.499294 tig0029127:-16069 Msa1440830:CDS
TCATCACTCCTTCCATAGCT+AGG 0.506102 tig0029127:+15589 None:intergenic
TCATCACTCCTTCCATAGCT+AGG 0.506102 tig0029127:+15658 None:intergenic
TCAGCAGTCCTCCCATAGCT+TGG 0.506372 tig0029127:+15625 None:intergenic
TATGGGGAGGAAGAAGGGTA+TGG 0.507252 tig0029127:-15826 Msa1440830:CDS
ATCAGGATATGGTGGGGCCC+AGG 0.508854 tig0029127:-16025 Msa1440830:CDS
TACTCAGTCCTCCCATAGCT+CGG 0.510767 tig0029127:+15691 None:intergenic
ATGAGGAGAAGCCGAGCTAT+GGG 0.513016 tig0029127:-15567 Msa1440830:CDS
GATTATGGGTCTGGTTATGG+TGG 0.514342 tig0029127:-15970 Msa1440830:CDS
GAATATGGATCTGGGTATGG+TGG 0.514465 tig0029127:-16138 Msa1440830:CDS
ATGAGGAGAAGCCGAGCTAT+GGG 0.515456 tig0029127:-15753 Msa1440830:CDS
TCTCCCATATTCAGACTCCT+GGG 0.524313 tig0029127:+16008 None:intergenic
CATCCTGAATCTGGTGGTGG+TGG 0.525129 tig0029127:-16294 Msa1440830:CDS
GGTGAATATGGATCTGGGTA+TGG 0.528384 tig0029127:-16183 Msa1440830:CDS
GTTGTATTAGATGCACTTTG+AGG 0.528494 tig0029127:-13060 Msa1440830:three_prime_UTR
TCGTCACTCCTTCCATAGCT+AGG 0.528757 tig0029127:+15775 None:intergenic
GAATATGGGTCTGGTTATGG+AGG 0.534629 tig0029127:-16060 Msa1440830:CDS
TAATATAGTCCAAACAAGAA+AGG 0.537089 tig0029127:+13390 None:intergenic
GGATATGGGTCTGGATATGG+TGG 0.537207 tig0029127:-15931 Msa1440830:CDS
AGGAAACAAGGATCTGGGTA+TGG 0.537850 tig0029127:-16255 Msa1440830:CDS
CTTCCTCCCCTCATCATCAT+CGG 0.538297 tig0029127:+13546 None:intergenic
GGTGGGTATGGGAGGAAACA+AGG 0.539324 tig0029127:-16267 Msa1440830:CDS
GGGTTATGGGAGGAAGAATG+AGG 0.539364 tig0029127:-15884 Msa1440830:CDS
ACGACGCAGGGAGGAGATGA+AGG 0.539747 tig0029127:-13571 Msa1440830:intron
AAACAAGCATGGTGCATCTG+TGG 0.541420 tig0029127:+13198 None:intergenic
GTTTGTTATAAGCAGGAGTG+AGG 0.544454 tig0029127:-13138 Msa1440830:three_prime_UTR
AGAATGAGGAAAGTGAATAT+GGG 0.544489 tig0029127:-16074 Msa1440830:CDS
TATGAGAGGAAGCCTAGCTA+TGG 0.544851 tig0029127:-15787 Msa1440830:CDS
GGAAGCAAGAATCTGGATAT+GGG 0.545271 tig0029127:-15945 Msa1440830:CDS
TATCCACCACCGTATGGTGT+TGG 0.548698 tig0029127:+16519 None:intergenic
ATATGGTGGGAGGAAGAATG+AGG 0.551005 tig0029127:-15917 Msa1440830:CDS
ATGAGGAGAAGCCAAGCTAT+GGG 0.551651 tig0029127:-15636 Msa1440830:CDS
TATGGGAGGAAAACTAGCTA+TGG 0.553310 tig0029127:-15550 Msa1440830:CDS
CGCCTCTCATAACCATAGCT+CGG 0.553721 tig0029127:+15505 None:intergenic
ATGGGTCTGGTTATGGTGGG+AGG 0.553742 tig0029127:-15966 Msa1440830:CDS
AAGATTCTGAATTTGGATCT+GGG 0.554398 tig0029127:-16107 Msa1440830:CDS
TTTCATCCTGAATCTGGTGG+TGG 0.554661 tig0029127:-16297 Msa1440830:CDS
TGTTTGAATTTGATTACACC+TGG 0.555743 tig0029127:-13245 Msa1440830:three_prime_UTR
AAATTGGATCTGGGTATGGT+GGG 0.556092 tig0029127:-16218 Msa1440830:CDS
TTGGATCTGGGTATGGTGGG+AGG 0.557126 tig0029127:-16215 Msa1440830:CDS
AAACCACTAGGAGCAGGTCT+AGG 0.558052 tig0029127:+16318 None:intergenic
GGATGAAAACCACTAGGAGC+AGG 0.558809 tig0029127:+16312 None:intergenic
GAATTGGTCTACCGTAGGTA+AGG 0.559097 tig0029127:+16487 None:intergenic
ATTATGGGTCTGGTTATGGT+GGG 0.561999 tig0029127:-15969 Msa1440830:CDS
TGAAGGCTCCGATGATGATG+AGG 0.563468 tig0029127:-13554 Msa1440830:CDS
AGGAGAGTGAGGGTTATGGG+AGG 0.563885 tig0029127:-15861 Msa1440830:CDS
AGGAGAGTGAGGGTTATGGG+AGG 0.563885 tig0029127:-15894 Msa1440830:CDS
GGGCCCAGGAGTCTGAATAT+GGG 0.564705 tig0029127:-16011 Msa1440830:CDS
CTATGGAAGGAGTGATGATG+AGG 0.564747 tig0029127:-15533 Msa1440830:CDS
CTATGGAAGGAGTGATGATG+AGG 0.564747 tig0029127:-15584 Msa1440830:CDS
CTATGGAAGGAGTGATGATG+AGG 0.564747 tig0029127:-15653 Msa1440830:CDS
TGGGTATGGGAGAAAGAATG+AGG 0.565655 tig0029127:-16088 Msa1440830:CDS
TGAATATGGGAGAAAGAATG+AGG 0.566293 tig0029127:-15998 Msa1440830:CDS
AAGAATGAGGAGGAGAGTGA+GGG 0.570080 tig0029127:-15871 Msa1440830:CDS
AAGAATGAGGAGGAGAGTGA+GGG 0.570080 tig0029127:-15904 Msa1440830:CDS
GAAATTGGATCTGGGTATGG+TGG 0.570260 tig0029127:-16219 Msa1440830:CDS
AAGAATCTGAAATTGGATCT+GGG 0.570455 tig0029127:-16227 Msa1440830:CDS
GAAGGCTCCGATGATGATGA+GGG 0.571314 tig0029127:-13553 Msa1440830:CDS
TATGAGAGGAAACCTAGCTA+TGG 0.572094 tig0029127:-15670 Msa1440830:CDS
AGATCCATATTCACCCTCCT+GGG 0.572216 tig0029127:+16149 None:intergenic
ACTCGTCATCATAACTCTTG+CGG 0.572679 tig0029127:+13500 None:intergenic
GGGTAACATGTTTCATCGGA+AGG 0.578559 tig0029127:+16462 None:intergenic
GATGAGGAGAAACCGAGCTA+TGG 0.578916 tig0029127:-15517 Msa1440830:CDS
GAAGAAGAGTGGTTATGGGG+AGG 0.579031 tig0029127:-15839 Msa1440830:CDS
TACGAGAGGAAACCTAGCTA+TGG 0.580456 tig0029127:-15601 Msa1440830:CDS
AGGAGGGTGAATATGGATCT+GGG 0.581883 tig0029127:-16146 Msa1440830:CDS
AAGAGGGTGAATATGGATCT+GGG 0.581883 tig0029127:-16188 Msa1440830:CDS
AAGAAGGGTATGGAGGAGGG+AGG 0.581914 tig0029127:-15816 Msa1440830:CDS
TATGGGAGGAAAACTAGCTA+TGG 0.582880 tig0029127:-15736 Msa1440830:CDS
GAGGAAGAAGAGTGGTTATG+GGG 0.583125 tig0029127:-15842 Msa1440830:CDS
AGCAAGAATCAGGATATGGT+GGG 0.583623 tig0029127:-16032 Msa1440830:CDS
TCTGAAATTGGATCTGGGTA+TGG 0.586258 tig0029127:-16222 Msa1440830:CDS
AAGCAAGAATCAGGATATGG+TGG 0.586655 tig0029127:-16033 Msa1440830:CDS
TATGGTGGGAGGAAGCAAGA+GGG 0.587340 tig0029127:-16204 Msa1440830:CDS
GATCCAACACCATACGGTGG+TGG 0.587938 tig0029127:-16522 Msa1440830:CDS
AATTAAATATTAAACAAGCA+TGG 0.599782 tig0029127:+13187 None:intergenic
ATGGGAGGAAACAAGGATCT+GGG 0.600433 tig0029127:-16260 Msa1440830:CDS
TACGACATTCACCTTACCTA+CGG 0.602527 tig0029127:-16498 Msa1440830:CDS
ATGGGAGGACTGAGTATGAG+AGG 0.603391 tig0029127:-15684 Msa1440830:CDS
ATGTCGTATCCACCACCGTA+TGG 0.603594 tig0029127:+16513 None:intergenic
TGATGGGTAACATGTTTCAT+CGG 0.604030 tig0029127:+16458 None:intergenic
GGAGGAAAACTAGCTATGGA+AGG 0.608209 tig0029127:-15546 Msa1440830:CDS
GAATACGATCCAACACCATA+CGG 0.609449 tig0029127:-16528 Msa1440830:CDS
AGAGGAAGCCTAGCTATGGA+AGG 0.611158 tig0029127:-15783 Msa1440830:CDS
GAGGCGTGATGATGATGATG+AGG 0.615292 tig0029127:-15488 Msa1440830:CDS
CGTCATCATAACTCTTGCGG+TGG 0.615697 tig0029127:+13503 None:intergenic
AACAAGCATGGTGCATCTGT+GGG 0.617266 tig0029127:+13199 None:intergenic
GGTTATGGGAGGAAGAAGAG+TGG 0.619008 tig0029127:-15850 Msa1440830:CDS
GTATGGTGGGAGGAAGCAAG+AGG 0.619865 tig0029127:-16205 Msa1440830:CDS
TCTTGCGGTGGTGACTCTTG+TGG 0.620902 tig0029127:+13515 None:intergenic
TGGTGGGAGGAAGAATGAGG+AGG 0.621895 tig0029127:-15914 Msa1440830:CDS
AGAGGAAACCTAGCTATGGA+AGG 0.622082 tig0029127:-15666 Msa1440830:CDS
TTAGCAGGCAATATCATACC+AGG 0.628023 tig0029127:+13227 None:intergenic
CTATGGACGGAGTGATGAGG+AGG 0.628211 tig0029127:-15719 Msa1440830:CDS
AAACAAGGATCTGGGTATGG+TGG 0.631712 tig0029127:-16252 Msa1440830:CDS
TTATGGGAGGAAGAATGAGG+AGG 0.633158 tig0029127:-15881 Msa1440830:CDS
TAACATGTTTCATCGGAAGG+TGG 0.634933 tig0029127:+16465 None:intergenic
CATTGTTTGATGAACCTGAT+GGG 0.635614 tig0029127:+16442 None:intergenic
GCTTCATCACCATAAGCAGA+AGG 0.635872 tig0029127:+16378 None:intergenic
AGAGGAAACCTAGCTATGGA+AGG 0.637235 tig0029127:-15597 Msa1440830:CDS
AACCGAGCTATGGTTATGAG+AGG 0.637534 tig0029127:-15507 Msa1440830:CDS
GGAGGACTGCTGAGTACGAG+AGG 0.638304 tig0029127:-15615 Msa1440830:CDS
GATATGGGTCTGGATATGGT+GGG 0.639585 tig0029127:-15930 Msa1440830:CDS
CTATGGAAGGAGTGACGATG+AGG 0.639792 tig0029127:-15770 Msa1440830:CDS
ATGTCATACTTCACTCGTGG+CGG 0.640823 tig0029127:-16582 Msa1440830:CDS
AGGTGGAATTGGTCTACCGT+AGG 0.641004 tig0029127:+16482 None:intergenic
ATGGGTCTGGATATGGTGGG+AGG 0.642952 tig0029127:-15927 Msa1440830:CDS
TAGCTATGGACGGAGTGATG+AGG 0.653663 tig0029127:-15722 Msa1440830:CDS
AGGAGAAGCCGAGCTATGGG+AGG 0.655067 tig0029127:-15699 Msa1440830:CDS
GCAAGAATCAGGATATGGTG+GGG 0.656360 tig0029127:-16031 Msa1440830:CDS
GGAGGAAAACTAGCTATGGA+CGG 0.657547 tig0029127:-15732 Msa1440830:CDS
AGGAGAAGCCGAGCTATGGG+AGG 0.661652 tig0029127:-15564 Msa1440830:CDS
AGGAGAAGCCGAGCTATGGG+AGG 0.661652 tig0029127:-15750 Msa1440830:CDS
GATTCAGGATGAAAACCACT+AGG 0.664066 tig0029127:+16306 None:intergenic
GCTCCGATGATGATGAGGGG+AGG 0.668807 tig0029127:-13549 Msa1440830:CDS
TCATTGTTTGATGAACCTGA+TGG 0.670564 tig0029127:+16441 None:intergenic
AGGAGAAGCCAAGCTATGGG+AGG 0.672917 tig0029127:-15633 Msa1440830:CDS
AAAATGTCATACTTCACTCG+TGG 0.675477 tig0029127:-16585 Msa1440830:CDS
AAGGCTCCGATGATGATGAG+GGG 0.691166 tig0029127:-13552 Msa1440830:CDS
AAACCTAGACCTGCTCCTAG+TGG 0.693441 tig0029127:-16321 Msa1440830:CDS
TACGATCCAACACCATACGG+TGG 0.709648 tig0029127:-16525 Msa1440830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATGTTGTTTTCATATATA+TGG - tig0029127:14273-14292 Msa1440830:intron 15.0%
!!! TATGTTGTTTTCATATATAT+GGG - tig0029127:14274-14293 Msa1440830:intron 15.0%
!! TGAATTAATAATCACAAAAT+TGG - tig0029127:14478-14497 Msa1440830:intron 15.0%
!! TACTCATAAATAATAATCAA+AGG + tig0029127:15043-15062 None:intergenic 15.0%
!! TAGAAGATTTAAGAAATTAA+AGG + tig0029127:15068-15087 None:intergenic 15.0%
!!! ATAAATCTTTGAAATTATCA+GGG - tig0029127:15456-15475 Msa1440830:intron 15.0%
!! TTTATTTAGTAGGTAATTAT+GGG + tig0029127:16192-16211 None:intergenic 15.0%
!! ATAATTACCTACTAAATAAA+GGG - tig0029127:16192-16211 Msa1440830:CDS 15.0%
!! AATTAAATATTAAACAAGCA+TGG + tig0029127:16443-16462 None:intergenic 15.0%
!!! TATTCTTACTTATGGTTTTA+TGG - tig0029127:14187-14206 Msa1440830:intron 20.0%
!! TGTTTAATCTTCTAATTTAG+AGG - tig0029127:14231-14250 Msa1440830:intron 20.0%
!! CACTATAATAATGATTTATG+AGG + tig0029127:14585-14604 None:intergenic 20.0%
!! TACAGTTACAATTTAAAAAC+GGG + tig0029127:14931-14950 None:intergenic 20.0%
!! CTACAGTTACAATTTAAAAA+CGG + tig0029127:14932-14951 None:intergenic 20.0%
!!! TTCTTAAATCTTCTATTTTG+AGG - tig0029127:15073-15092 Msa1440830:intron 20.0%
!! AAGCTGTATATCATATATTA+CGG + tig0029127:15258-15277 None:intergenic 20.0%
!!! GATAAATCTTTGAAATTATC+AGG - tig0029127:15455-15474 Msa1440830:intron 20.0%
!!! TAAATCTTTGAAATTATCAG+GGG - tig0029127:15457-15476 Msa1440830:intron 20.0%
!!! AAGTCAAAACAATTTTGAAA+TGG + tig0029127:15769-15788 None:intergenic 20.0%
!!! CTTTATTTAGTAGGTAATTA+TGG + tig0029127:16193-16212 None:intergenic 20.0%
!! CATAATTACCTACTAAATAA+AGG - tig0029127:16191-16210 Msa1440830:CDS 20.0%
! TATGTGAGTATTCTTACTTA+TGG - tig0029127:14179-14198 Msa1440830:intron 25.0%
! CTTTGAATTCTTGAGAAAAT+TGG - tig0029127:14505-14524 Msa1440830:intron 25.0%
! GTGTAATTATGTGAACTAAT+TGG - tig0029127:14602-14621 Msa1440830:intron 25.0%
!! ATGTGAACTAATTGGTAATT+TGG - tig0029127:14610-14629 Msa1440830:intron 25.0%
! GATTGTTACTACAATCAATA+GGG + tig0029127:14735-14754 None:intergenic 25.0%
! AGATTGTTACTACAATCAAT+AGG + tig0029127:14736-14755 None:intergenic 25.0%
! TGCATAATAGCATTAGAATT+AGG + tig0029127:14865-14884 None:intergenic 25.0%
!!! TTTTGAGGTTTTAATGTGTA+TGG - tig0029127:15088-15107 Msa1440830:intron 25.0%
!! TTTTAATGTGTATGGTACTA+TGG - tig0029127:15096-15115 Msa1440830:intron 25.0%
! TAGATATAATTGAGTTTGAG+TGG - tig0029127:15377-15396 Msa1440830:intron 25.0%
! AAAGATTTATCAGAGTAAGT+TGG + tig0029127:15446-15465 None:intergenic 25.0%
!!! CATTTACCTATTTTTCTTCT+CGG + tig0029127:15602-15621 None:intergenic 25.0%
! GAGAAGAAAAATAGGTAAAT+GGG - tig0029127:15601-15620 Msa1440830:CDS 25.0%
!!! TCAAAATTGTTTTGACTTGT+TGG - tig0029127:15771-15790 Msa1440830:CDS 25.0%
! CGATATATGGATTTAATGTT+TGG - tig0029127:15866-15885 Msa1440830:CDS 25.0%
!! TTCCAACAATGTACATTTTA+TGG - tig0029127:15967-15986 Msa1440830:CDS 25.0%
! ATCCATAAAATGTACATTGT+TGG + tig0029127:15972-15991 None:intergenic 25.0%
!! TACATTTTATGGATTTTGCA+AGG - tig0029127:15978-15997 Msa1440830:CDS 25.0%
! TAATATAGTCCAAACAAGAA+AGG + tig0029127:16240-16259 None:intergenic 25.0%
!! AAACTAAATGTATTGCTGTT+TGG - tig0029127:16291-16310 Msa1440830:CDS 25.0%
TGAGCATAAGATTCAAATTG+AGG + tig0029127:13228-13247 None:intergenic 30.0%
! AAGAATCTGAAATTGGATCT+GGG - tig0029127:13400-13419 Msa1440830:three_prime_UTR 30.0%
AAGATTCTGAATTTGGATCT+GGG - tig0029127:13520-13539 Msa1440830:CDS 30.0%
AAGAATGAGGAAAGTGAATA+TGG - tig0029127:13552-13571 Msa1440830:CDS 30.0%
AGAATGAGGAAAGTGAATAT+GGG - tig0029127:13553-13572 Msa1440830:CDS 30.0%
AAGAATGAGGAAAGTGATTA+TGG - tig0029127:13642-13661 Msa1440830:intron 30.0%
AGAATGAGGAAAGTGATTAT+GGG - tig0029127:13643-13662 Msa1440830:intron 30.0%
TCAAACTCTATATCCTACTT+AGG + tig0029127:14447-14466 None:intergenic 30.0%
AGGTACATATAATATCAGAG+TGG + tig0029127:14565-14584 None:intergenic 30.0%
AAGTTTCACACAATTGTTGA+TGG - tig0029127:14686-14705 Msa1440830:intron 30.0%
! CAATTGTTGATGGAAATATG+TGG - tig0029127:14696-14715 Msa1440830:intron 30.0%
TAGCATTAGAATTAGGCATT+AGG + tig0029127:14858-14877 None:intergenic 30.0%
AGAGTGAACAACTATAAGTT+GGG + tig0029127:14998-15017 None:intergenic 30.0%
TGTGGTATGATTGAAGTTTA+GGG + tig0029127:15142-15161 None:intergenic 30.0%
TATCAGTGTAGACAATAAAG+TGG + tig0029127:15317-15336 None:intergenic 30.0%
TAAAGAAATAATGCAGCTAG+CGG + tig0029127:15355-15374 None:intergenic 30.0%
! ATTTTTCTTCTCGGCAAATT+GGG + tig0029127:15593-15612 None:intergenic 30.0%
! TATTTTTCTTCTCGGCAAAT+TGG + tig0029127:15594-15613 None:intergenic 30.0%
AATTTGCCGAGAAGAAAAAT+AGG - tig0029127:15593-15612 Msa1440830:CDS 30.0%
CGAGAAGAAAAATAGGTAAA+TGG - tig0029127:15600-15619 Msa1440830:CDS 30.0%
CAGAAAGTGATAGAATGAAT+GGG + tig0029127:15656-15675 None:intergenic 30.0%
ATGTACATTGTTGGAATGTT+AGG + tig0029127:15963-15982 None:intergenic 30.0%
TGATATCTTCCTTTCTTGTT+TGG - tig0029127:16228-16247 Msa1440830:CDS 30.0%
ACACAACAACTCAAACATTA+GGG + tig0029127:16337-16356 None:intergenic 30.0%
AACACAACAACTCAAACATT+AGG + tig0029127:16338-16357 None:intergenic 30.0%
! TTACACTATTTCTCTCTGTT+TGG - tig0029127:16356-16375 Msa1440830:CDS 30.0%
TGTTTGAATTTGATTACACC+TGG - tig0029127:16382-16401 Msa1440830:CDS 30.0%
CTGCTTATAACAAACTTCTT+TGG + tig0029127:16484-16503 None:intergenic 30.0%
!! CAAAGAAGTTTGTTATAAGC+AGG - tig0029127:16482-16501 Msa1440830:CDS 30.0%
AGAGCAACATTAACCTATTA+AGG - tig0029127:16545-16564 Msa1440830:CDS 30.0%
GCATCTAATACAACCTTAAT+AGG + tig0029127:16561-16580 None:intergenic 30.0%
TTGTATTAGATGCACTTTGA+GGG - tig0029127:16568-16587 Msa1440830:CDS 30.0%
! TGATGGGTAACATGTTTCAT+CGG + tig0029127:13172-13191 None:intergenic 35.0%
CATTGTTTGATGAACCTGAT+GGG + tig0029127:13188-13207 None:intergenic 35.0%
TCATTGTTTGATGAACCTGA+TGG + tig0029127:13189-13208 None:intergenic 35.0%
! CAAGAATCTGAAATTGGATC+TGG - tig0029127:13399-13418 Msa1440830:three_prime_UTR 35.0%
AGGAAGCAAGATTCTGAATT+TGG - tig0029127:13513-13532 Msa1440830:CDS 35.0%
CAAGATTCTGAATTTGGATC+TGG - tig0029127:13519-13538 Msa1440830:CDS 35.0%
TGAATATGGGAGAAAGAATG+AGG - tig0029127:13629-13648 Msa1440830:intron 35.0%
!! GAATATTTTTGCCCTTTGCT+AGG - tig0029127:14319-14338 Msa1440830:intron 35.0%
GATCATAAGATCCTAGCAAA+GGG + tig0029127:14333-14352 None:intergenic 35.0%
AGATCATAAGATCCTAGCAA+AGG + tig0029127:14334-14353 None:intergenic 35.0%
CTCTATATCCTACTTAGGAT+CGG + tig0029127:14442-14461 None:intergenic 35.0%
ACTACAATCAATAGGGAACA+AGG + tig0029127:14728-14747 None:intergenic 35.0%
! AGTGAACAACTATAAGTTGG+GGG + tig0029127:14996-15015 None:intergenic 35.0%
GAGTGAACAACTATAAGTTG+GGG + tig0029127:14997-15016 None:intergenic 35.0%
CAGAGTGAACAACTATAAGT+TGG + tig0029127:14999-15018 None:intergenic 35.0%
TGGTATGATTGAAGTTTAGG+GGG + tig0029127:15140-15159 None:intergenic 35.0%
GTGGTATGATTGAAGTTTAG+GGG + tig0029127:15141-15160 None:intergenic 35.0%
GTGTGGTATGATTGAAGTTT+AGG + tig0029127:15143-15162 None:intergenic 35.0%
ACTACATGATAGCTGACATA+CGG - tig0029127:15161-15180 Msa1440830:intron 35.0%
CACTTAAGCTGTGTAGTAAA+TGG + tig0029127:15210-15229 None:intergenic 35.0%
AAAGAAATAATGCAGCTAGC+GGG + tig0029127:15354-15373 None:intergenic 35.0%
TTGAAATTATCAGGGGTGAT+AGG - tig0029127:15464-15483 Msa1440830:intron 35.0%
!! TGAACTAGTCTGACTTTTAC+TGG - tig0029127:15552-15571 Msa1440830:CDS 35.0%
! TTTTTCTTCTCGGCAAATTG+GGG + tig0029127:15592-15611 None:intergenic 35.0%
AATAGGTAAATGGGATGCTA+TGG - tig0029127:15610-15629 Msa1440830:CDS 35.0%
GTGATAGAATGAATGGGAAT+GGG + tig0029127:15650-15669 None:intergenic 35.0%
AGTGATAGAATGAATGGGAA+TGG + tig0029127:15651-15670 None:intergenic 35.0%
GCAGAAAGTGATAGAATGAA+TGG + tig0029127:15657-15676 None:intergenic 35.0%
ACTTAGGACTTTCATGTATG+AGG + tig0029127:15826-15845 None:intergenic 35.0%
GAAAACTGCAACATGTACTT+AGG + tig0029127:15842-15861 None:intergenic 35.0%
! GCAGTTTTCAAAGCGATATA+TGG - tig0029127:15853-15872 Msa1440830:CDS 35.0%
! GAGTCAACCCTTTATTTAGT+AGG + tig0029127:16202-16221 None:intergenic 35.0%
TCTTGAGCTTTCAGAACTAT+TGG - tig0029127:16265-16284 Msa1440830:CDS 35.0%
GTTGTATTAGATGCACTTTG+AGG - tig0029127:16567-16586 Msa1440830:CDS 35.0%
GAATACGATCCAACACCATA+CGG - tig0029127:13099-13118 Msa1440830:three_prime_UTR 40.0%
TACGACATTCACCTTACCTA+CGG - tig0029127:13129-13148 Msa1440830:three_prime_UTR 40.0%
TAACATGTTTCATCGGAAGG+TGG + tig0029127:13165-13184 None:intergenic 40.0%
GATGAAACATGTTACCCATC+AGG - tig0029127:13171-13190 Msa1440830:three_prime_UTR 40.0%
TATGCTCAACCTTCTGCTTA+TGG - tig0029127:13240-13259 Msa1440830:three_prime_UTR 40.0%
GATTCAGGATGAAAACCACT+AGG + tig0029127:13324-13343 None:intergenic 40.0%
! AGTGGTTTTCATCCTGAATC+TGG - tig0029127:13324-13343 Msa1440830:three_prime_UTR 40.0%
! GGTGGTCAAGAATCTGAAAT+TGG - tig0029127:13393-13412 Msa1440830:three_prime_UTR 40.0%
! TCTGAAATTGGATCTGGGTA+TGG - tig0029127:13405-13424 Msa1440830:three_prime_UTR 40.0%
AAATTGGATCTGGGTATGGT+GGG - tig0029127:13409-13428 Msa1440830:three_prime_UTR 40.0%
AAGAGGGTGAATATGGATCT+GGG - tig0029127:13439-13458 Msa1440830:three_prime_UTR 40.0%
TCTGAATTTGGATCTGGGTA+TGG - tig0029127:13525-13544 Msa1440830:CDS 40.0%
CTGAATTTGGATCTGGGTAT+GGG - tig0029127:13526-13545 Msa1440830:CDS 40.0%
AGTGAATATGGGTCTGGTTA+TGG - tig0029127:13564-13583 Msa1440830:CDS 40.0%
AGGAAGCAAGAATCAGGATA+TGG - tig0029127:13591-13610 Msa1440830:intron 40.0%
AAGCAAGAATCAGGATATGG+TGG - tig0029127:13594-13613 Msa1440830:intron 40.0%
AGCAAGAATCAGGATATGGT+GGG - tig0029127:13595-13614 Msa1440830:intron 40.0%
AGTGATTATGGGTCTGGTTA+TGG - tig0029127:13654-13673 Msa1440830:intron 40.0%
ATTATGGGTCTGGTTATGGT+GGG - tig0029127:13658-13677 Msa1440830:intron 40.0%
AGGAAGCAAGAATCTGGATA+TGG - tig0029127:13681-13700 Msa1440830:intron 40.0%
GGAAGCAAGAATCTGGATAT+GGG - tig0029127:13682-13701 Msa1440830:intron 40.0%
TATGGGAGGAAAACTAGCTA+TGG - tig0029127:13891-13910 Msa1440830:intron 40.0%
TATGAGAGGAAACCTAGCTA+TGG - tig0029127:13957-13976 Msa1440830:intron 40.0%
TATGGGAGGAAAACTAGCTA+TGG - tig0029127:13891-13910 Msa1440830:intron 40.0%
! GATGATGATGATGAGGGATA+TGG - tig0029127:14146-14165 Msa1440830:intron 40.0%
TATCCTACTTAGGATCGGAA+GGG + tig0029127:14437-14456 None:intergenic 40.0%
ATATCCTACTTAGGATCGGA+AGG + tig0029127:14438-14457 None:intergenic 40.0%
ACTATTGTCTAGTAGGCAAG+GGG + tig0029127:14537-14556 None:intergenic 40.0%
CACTATTGTCTAGTAGGCAA+GGG + tig0029127:14538-14557 None:intergenic 40.0%
ACACTATTGTCTAGTAGGCA+AGG + tig0029127:14539-14558 None:intergenic 40.0%
GGAGTACACTATTGTCTAGT+AGG + tig0029127:14544-14563 None:intergenic 40.0%
TCCATAGTTGCATTGCATAG+TGG - tig0029127:14886-14905 Msa1440830:intron 40.0%
TCCACTATGCAATGCAACTA+TGG + tig0029127:14890-14909 None:intergenic 40.0%
ACAAGAGCTTCCCTATATAG+CGG + tig0029127:14958-14977 None:intergenic 40.0%
GGTATGATTGAAGTTTAGGG+GGG + tig0029127:15139-15158 None:intergenic 40.0%
ATGTCAGCTATCATGTAGTG+TGG + tig0029127:15160-15179 None:intergenic 40.0%
GAATGAATGGGAATGGGAAT+GGG + tig0029127:15644-15663 None:intergenic 40.0%
AGAATGAATGGGAATGGGAA+TGG + tig0029127:15645-15664 None:intergenic 40.0%
! CCTAAAGGGCATGTTTGTAT+TGG + tig0029127:15679-15698 None:intergenic 40.0%
CCAATACAAACATGCCCTTT+AGG - tig0029127:15676-15695 Msa1440830:CDS 40.0%
TAAGAAACCGCAAGCCTAAA+GGG + tig0029127:15693-15712 None:intergenic 40.0%
TTAAGAAACCGCAAGCCTAA+AGG + tig0029127:15694-15713 None:intergenic 40.0%
ACTCGTCATCATAACTCTTG+CGG + tig0029127:16130-16149 None:intergenic 40.0%
TTAGCAGGCAATATCATACC+AGG + tig0029127:16403-16422 None:intergenic 40.0%
!! GTTTGTTATAAGCAGGAGTG+AGG - tig0029127:16489-16508 Msa1440830:CDS 40.0%
! AGCAGGAGTGAGGTAATTTT+AGG - tig0029127:16499-16518 Msa1440830:CDS 40.0%
ATGTCATACTTCACTCGTGG+CGG - tig0029127:13045-13064 Msa1440830:three_prime_UTR 45.0%
! GAATTGGTCTACCGTAGGTA+AGG + tig0029127:13143-13162 None:intergenic 45.0%
GTTTCATCGGAAGGTGGAAT+TGG + tig0029127:13159-13178 None:intergenic 45.0%
GGGTAACATGTTTCATCGGA+AGG + tig0029127:13168-13187 None:intergenic 45.0%
GCTTCATCACCATAAGCAGA+AGG + tig0029127:13252-13271 None:intergenic 45.0%
! GGTTTTCATCCTGAATCTGG+TGG - tig0029127:13327-13346 Msa1440830:three_prime_UTR 45.0%
TTTCATCCTGAATCTGGTGG+TGG - tig0029127:13330-13349 Msa1440830:three_prime_UTR 45.0%
TATGGGAGGAAACAAGGATC+TGG - tig0029127:13366-13385 Msa1440830:three_prime_UTR 45.0%
ATGGGAGGAAACAAGGATCT+GGG - tig0029127:13367-13386 Msa1440830:three_prime_UTR 45.0%
AGGAAACAAGGATCTGGGTA+TGG - tig0029127:13372-13391 Msa1440830:three_prime_UTR 45.0%
AAACAAGGATCTGGGTATGG+TGG - tig0029127:13375-13394 Msa1440830:three_prime_UTR 45.0%
GAAATTGGATCTGGGTATGG+TGG - tig0029127:13408-13427 Msa1440830:three_prime_UTR 45.0%
AGGAAGCAAGAGGGTGAATA+TGG - tig0029127:13432-13451 Msa1440830:three_prime_UTR 45.0%
CAAGAGGGTGAATATGGATC+TGG - tig0029127:13438-13457 Msa1440830:three_prime_UTR 45.0%
GGTGAATATGGATCTGGGTA+TGG - tig0029127:13444-13463 Msa1440830:three_prime_UTR 45.0%
GAATATGGATCTGGGTATGG+TGG - tig0029127:13447-13466 Msa1440830:three_prime_UTR 45.0%
AGATCCATATTCACCCTCCT+GGG + tig0029127:13481-13500 None:intergenic 45.0%
AGGAGGGTGAATATGGATCT+GGG - tig0029127:13481-13500 Msa1440830:exon 45.0%
GGTGAATATGGATCTGGGTA+TGG - tig0029127:13444-13463 Msa1440830:three_prime_UTR 45.0%
GAATATGGATCTGGGTATGG+TGG - tig0029127:13447-13466 Msa1440830:three_prime_UTR 45.0%
TGGGTATGGGAGAAAGAATG+AGG - tig0029127:13539-13558 Msa1440830:CDS 45.0%
GAGGAAAGTGAATATGGGTC+TGG - tig0029127:13558-13577 Msa1440830:CDS 45.0%
GAATATGGGTCTGGTTATGG+AGG - tig0029127:13567-13586 Msa1440830:intron 45.0%
GCAAGAATCAGGATATGGTG+GGG - tig0029127:13596-13615 Msa1440830:intron 45.0%
TCTCCCATATTCAGACTCCT+GGG + tig0029127:13622-13641 None:intergenic 45.0%
TTCTCCCATATTCAGACTCC+TGG + tig0029127:13623-13642 None:intergenic 45.0%
GAGGAAAGTGATTATGGGTC+TGG - tig0029127:13648-13667 Msa1440830:intron 45.0%
GATTATGGGTCTGGTTATGG+TGG - tig0029127:13657-13676 Msa1440830:intron 45.0%
CAAGAATCTGGATATGGGTC+TGG - tig0029127:13687-13706 Msa1440830:intron 45.0%
TCTGGATATGGGTCTGGATA+TGG - tig0029127:13693-13712 Msa1440830:intron 45.0%
GATATGGGTCTGGATATGGT+GGG - tig0029127:13697-13716 Msa1440830:intron 45.0%
! ATATGGTGGGAGGAAGAATG+AGG - tig0029127:13710-13729 Msa1440830:intron 45.0%
AAGAATGAGGAGGAGAGTGA+GGG - tig0029127:13723-13742 Msa1440830:intron 45.0%
TTATGGGAGGAAGAATGAGG+AGG - tig0029127:13746-13765 Msa1440830:intron 45.0%
AAGAATGAGGAGGAGAGTGA+GGG - tig0029127:13723-13742 Msa1440830:intron 45.0%
GGAGGAAGAAGAGTGGTTAT+GGG - tig0029127:13784-13803 Msa1440830:intron 45.0%
GAGGAAGAAGAGTGGTTATG+GGG - tig0029127:13785-13804 Msa1440830:intron 45.0%
TATGAGAGGAAGCCTAGCTA+TGG - tig0029127:13840-13859 Msa1440830:intron 45.0%
!! CTAGTTTTCCTCCCATAGCT+CGG + tig0029127:13888-13907 None:intergenic 45.0%
GGAGGAAAACTAGCTATGGA+CGG - tig0029127:13895-13914 Msa1440830:intron 45.0%
AGAGGAAACCTAGCTATGGA+AGG - tig0029127:13961-13980 Msa1440830:intron 45.0%
TCATCACTCCTTCCATAGCT+AGG + tig0029127:13972-13991 None:intergenic 45.0%
! CTATGGAAGGAGTGATGATG+AGG - tig0029127:13974-13993 Msa1440830:intron 45.0%
ATGAGGAGAAGCCAAGCTAT+GGG - tig0029127:13991-14010 Msa1440830:intron 45.0%
TACGAGAGGAAACCTAGCTA+TGG - tig0029127:14026-14045 Msa1440830:intron 45.0%
AGAGGAAACCTAGCTATGGA+AGG - tig0029127:13961-13980 Msa1440830:intron 45.0%
TCATCACTCCTTCCATAGCT+AGG + tig0029127:13972-13991 None:intergenic 45.0%
! CTATGGAAGGAGTGATGATG+AGG - tig0029127:13974-13993 Msa1440830:intron 45.0%
!! CTAGTTTTCCTCCCATAGCT+CGG + tig0029127:13888-13907 None:intergenic 45.0%
GGAGGAAAACTAGCTATGGA+AGG - tig0029127:13895-13914 Msa1440830:intron 45.0%
! CTATGGAAGGAGTGATGATG+AGG - tig0029127:13974-13993 Msa1440830:intron 45.0%
AACCGAGCTATGGTTATGAG+AGG - tig0029127:14120-14139 Msa1440830:intron 45.0%
! AGGCGTGATGATGATGATGA+GGG - tig0029127:14140-14159 Msa1440830:intron 45.0%
ATCCTACTTAGGATCGGAAG+GGG + tig0029127:14436-14455 None:intergenic 45.0%
CTATTGTCTAGTAGGCAAGG+GGG + tig0029127:14536-14555 None:intergenic 45.0%
! TGCTGCAATTGAAGAGTGTG+TGG + tig0029127:14772-14791 None:intergenic 45.0%
!! TGCATTGCATAGTGGATCCT+AGG - tig0029127:14894-14913 Msa1440830:intron 45.0%
AACTGTAGCGACCGCTATAT+AGG - tig0029127:14944-14963 Msa1440830:intron 45.0%
ACTGTAGCGACCGCTATATA+GGG - tig0029127:14945-14964 Msa1440830:intron 45.0%
GGCAAATTGGGGTTAAGGAA+TGG + tig0029127:15581-15600 None:intergenic 45.0%
TTCTCGGCAAATTGGGGTTA+AGG + tig0029127:15586-15605 None:intergenic 45.0%
ATGGGAATGGGAATGGGAAT+GGG + tig0029127:15638-15657 None:intergenic 45.0%
AATGGGAATGGGAATGGGAA+TGG + tig0029127:15639-15658 None:intergenic 45.0%
AAACATGCCCTTTAGGCTTG+CGG - tig0029127:15683-15702 Msa1440830:CDS 45.0%
! ATGATGTTTTCGTACGACGC+AGG - tig0029127:16043-16062 Msa1440830:CDS 45.0%
! TGATGTTTTCGTACGACGCA+GGG - tig0029127:16044-16063 Msa1440830:CDS 45.0%
!! GACTGTCGTTGCTGTTTGAA+TGG - tig0029127:16159-16178 Msa1440830:CDS 45.0%
AACAAGCATGGTGCATCTGT+GGG + tig0029127:16431-16450 None:intergenic 45.0%
AAACAAGCATGGTGCATCTG+TGG + tig0029127:16432-16451 None:intergenic 45.0%
! TACTTCACTCGTGGCGGAAA+CGG - tig0029127:13051-13070 Msa1440830:three_prime_UTR 50.0%
TACGATCCAACACCATACGG+TGG - tig0029127:13102-13121 Msa1440830:three_prime_UTR 50.0%
TATCCACCACCGTATGGTGT+TGG + tig0029127:13111-13130 None:intergenic 50.0%
ATGTCGTATCCACCACCGTA+TGG + tig0029127:13117-13136 None:intergenic 50.0%
! AGGTGGAATTGGTCTACCGT+AGG + tig0029127:13148-13167 None:intergenic 50.0%
CTAGGAGCAGGTCTAGGTTT+AGG + tig0029127:13306-13325 None:intergenic 50.0%
AAACCTAGACCTGCTCCTAG+TGG - tig0029127:13306-13325 Msa1440830:three_prime_UTR 50.0%
AAACCACTAGGAGCAGGTCT+AGG + tig0029127:13312-13331 None:intergenic 50.0%
GGATGAAAACCACTAGGAGC+AGG + tig0029127:13318-13337 None:intergenic 50.0%
! TATGGTGGGAGGAAGCAAGA+GGG - tig0029127:13423-13442 Msa1440830:three_prime_UTR 50.0%
TATGGATCTGGGTATGGTGG+TGG - tig0029127:13450-13469 Msa1440830:three_prime_UTR 50.0%
CAGATCCATATTCACCCTCC+TGG + tig0029127:13482-13501 None:intergenic 50.0%
CAGGAGGGTGAATATGGATC+TGG - tig0029127:13480-13499 Msa1440830:exon 50.0%
! ATGGATCTGGGTATGGTGGA+AGG - tig0029127:13493-13512 Msa1440830:exon 50.0%
ATGGGTCTGGTTATGGAGGA+AGG - tig0029127:13571-13590 Msa1440830:intron 50.0%
GGAGGAAGGAAGCAAGAATC+AGG - tig0029127:13585-13604 Msa1440830:intron 50.0%
GGATATGGGTCTGGATATGG+TGG - tig0029127:13696-13715 Msa1440830:intron 50.0%
GAAGAATGAGGAGGAGAGTG+AGG - tig0029127:13722-13741 Msa1440830:intron 50.0%
AGGAGGAGAGTGAGGGTTAT+GGG - tig0029127:13730-13749 Msa1440830:intron 50.0%
GGGTTATGGGAGGAAGAATG+AGG - tig0029127:13743-13762 Msa1440830:intron 50.0%
GAAGAATGAGGAGGAGAGTG+AGG - tig0029127:13722-13741 Msa1440830:intron 50.0%
AGGAGGAGAGTGAGGGTTAT+GGG - tig0029127:13730-13749 Msa1440830:intron 50.0%
GGTTATGGGAGGAAGAAGAG+TGG - tig0029127:13777-13796 Msa1440830:intron 50.0%
GGGAGGAAGAAGAGTGGTTA+TGG - tig0029127:13783-13802 Msa1440830:intron 50.0%
GAAGAAGAGTGGTTATGGGG+AGG - tig0029127:13788-13807 Msa1440830:intron 50.0%
AGTGGTTATGGGGAGGAAGA+AGG - tig0029127:13795-13814 Msa1440830:intron 50.0%
GTGGTTATGGGGAGGAAGAA+GGG - tig0029127:13796-13815 Msa1440830:intron 50.0%
TATGGGGAGGAAGAAGGGTA+TGG - tig0029127:13801-13820 Msa1440830:intron 50.0%
! AGGAAGAAGGGTATGGAGGA+GGG - tig0029127:13808-13827 Msa1440830:intron 50.0%
AGAGGAAGCCTAGCTATGGA+AGG - tig0029127:13844-13863 Msa1440830:intron 50.0%
TCGTCACTCCTTCCATAGCT+AGG + tig0029127:13855-13874 None:intergenic 50.0%
CTATGGAAGGAGTGACGATG+AGG - tig0029127:13857-13876 Msa1440830:intron 50.0%
ATGAGGAGAAGCCGAGCTAT+GGG - tig0029127:13874-13893 Msa1440830:intron 50.0%
TAGCTATGGACGGAGTGATG+AGG - tig0029127:13905-13924 Msa1440830:intron 50.0%
TACTCAGTCCTCCCATAGCT+CGG + tig0029127:13939-13958 None:intergenic 50.0%
ATGGGAGGACTGAGTATGAG+AGG - tig0029127:13943-13962 Msa1440830:intron 50.0%
GATGAGGAGAAGCCAAGCTA+TGG - tig0029127:13990-14009 Msa1440830:intron 50.0%
ATGAGGAGAAGCCGAGCTAT+GGG - tig0029127:13874-13893 Msa1440830:intron 50.0%
GATGAGGAGAAACCGAGCTA+TGG - tig0029127:14110-14129 Msa1440830:intron 50.0%
CGCCTCTCATAACCATAGCT+CGG + tig0029127:14125-14144 None:intergenic 50.0%
! GAGGCGTGATGATGATGATG+AGG - tig0029127:14139-14158 Msa1440830:intron 50.0%
! GGGCTGTAACTTGTCACACA+AGG + tig0029127:14416-14435 None:intergenic 50.0%
! TGAAGGCTCCGATGATGATG+AGG - tig0029127:16073-16092 Msa1440830:CDS 50.0%
! GAAGGCTCCGATGATGATGA+GGG - tig0029127:16074-16093 Msa1440830:CDS 50.0%
! AAGGCTCCGATGATGATGAG+GGG - tig0029127:16075-16094 Msa1440830:CDS 50.0%
CTTCCTCCCCTCATCATCAT+CGG + tig0029127:16084-16103 None:intergenic 50.0%
CGTCATCATAACTCTTGCGG+TGG + tig0029127:16127-16146 None:intergenic 50.0%
CATCTGTGGGATGCATTAGC+AGG + tig0029127:16418-16437 None:intergenic 50.0%
GATCCAACACCATACGGTGG+TGG - tig0029127:13105-13124 Msa1440830:three_prime_UTR 55.0%
!! CATCCTGAATCTGGTGGTGG+TGG - tig0029127:13333-13352 Msa1440830:three_prime_UTR 55.0%
GGTGGGTATGGGAGGAAACA+AGG - tig0029127:13360-13379 Msa1440830:three_prime_UTR 55.0%
! TTGGATCTGGGTATGGTGGG+AGG - tig0029127:13412-13431 Msa1440830:three_prime_UTR 55.0%
! GTATGGTGGGAGGAAGCAAG+AGG - tig0029127:13422-13441 Msa1440830:three_prime_UTR 55.0%
!! GATCTGGGTATGGTGGTGGT+GGG - tig0029127:13454-13473 Msa1440830:three_prime_UTR 55.0%
!! ATCTGGGTATGGTGGTGGTG+GGG - tig0029127:13455-13474 Msa1440830:three_prime_UTR 55.0%
GGGCCCAGGAGTCTGAATAT+GGG - tig0029127:13616-13635 Msa1440830:intron 55.0%
! ATGGGTCTGGTTATGGTGGG+AGG - tig0029127:13661-13680 Msa1440830:intron 55.0%
GGTGGGAGGAAGCAAGAATC+TGG - tig0029127:13675-13694 Msa1440830:intron 55.0%
! ATGGGTCTGGATATGGTGGG+AGG - tig0029127:13700-13719 Msa1440830:intron 55.0%
TGGTGGGAGGAAGAATGAGG+AGG - tig0029127:13713-13732 Msa1440830:intron 55.0%
GAGGAGGAGAGTGAGGGTTA+TGG - tig0029127:13729-13748 Msa1440830:intron 55.0%
AGGAGAGTGAGGGTTATGGG+AGG - tig0029127:13733-13752 Msa1440830:intron 55.0%
GAGGAGGAGAGTGAGGGTTA+TGG - tig0029127:13729-13748 Msa1440830:intron 55.0%
AGGAGAGTGAGGGTTATGGG+AGG - tig0029127:13733-13752 Msa1440830:intron 55.0%
! GAGGAAGAAGGGTATGGAGG+AGG - tig0029127:13807-13826 Msa1440830:intron 55.0%
! AAGAAGGGTATGGAGGAGGG+AGG - tig0029127:13811-13830 Msa1440830:intron 55.0%
GAGGGAGGAGTGAGTATGAG+AGG - tig0029127:13826-13845 Msa1440830:intron 55.0%
GATGAGGAGAAGCCGAGCTA+TGG - tig0029127:13873-13892 Msa1440830:intron 55.0%
CTATGGACGGAGTGATGAGG+AGG - tig0029127:13908-13927 Msa1440830:intron 55.0%
AGGAGGAGAAGCCGAGCTAT+GGG - tig0029127:13925-13944 Msa1440830:intron 55.0%
AGGAGAAGCCAAGCTATGGG+AGG - tig0029127:13994-14013 Msa1440830:intron 55.0%
TCAGCAGTCCTCCCATAGCT+TGG + tig0029127:14005-14024 None:intergenic 55.0%
GATGAGGAGAAGCCGAGCTA+TGG - tig0029127:13873-13892 Msa1440830:intron 55.0%
AGCCCCTTCCGATCCTAAGT+AGG - tig0029127:14431-14450 Msa1440830:intron 55.0%
! AACGGGTTCGTGTAGCACCT+AGG + tig0029127:14914-14933 None:intergenic 55.0%
! TGTTTTCGTACGACGCAGGG+AGG - tig0029127:16047-16066 Msa1440830:CDS 55.0%
TCTTGCGGTGGTGACTCTTG+TGG + tig0029127:16115-16134 None:intergenic 55.0%
CCACCACCACCACCAGATTC+AGG + tig0029127:13339-13358 None:intergenic 60.0%
!! CCTGAATCTGGTGGTGGTGG+TGG - tig0029127:13336-13355 Msa1440830:three_prime_UTR 60.0%
!! GAATCTGGTGGTGGTGGTGG+TGG - tig0029127:13339-13358 Msa1440830:three_prime_UTR 60.0%
!! GTGGTGGTGGTGGTGGGTAT+GGG - tig0029127:13349-13368 Msa1440830:three_prime_UTR 60.0%
!! GGATCTGGGTATGGTGGTGG+TGG - tig0029127:13453-13472 Msa1440830:three_prime_UTR 60.0%
! ATCAGGATATGGTGGGGCCC+AGG - tig0029127:13602-13621 Msa1440830:intron 60.0%
GGGGCCCAGGAGTCTGAATA+TGG - tig0029127:13615-13634 Msa1440830:intron 60.0%
! GGGGAGGAAGAAGGGTATGG+AGG - tig0029127:13804-13823 Msa1440830:intron 60.0%
AGGAGAAGCCGAGCTATGGG+AGG - tig0029127:13877-13896 Msa1440830:intron 60.0%
GAGGAGGAGAAGCCGAGCTA+TGG - tig0029127:13924-13943 Msa1440830:intron 60.0%
AGGAGAAGCCGAGCTATGGG+AGG - tig0029127:13877-13896 Msa1440830:intron 60.0%
GGAGGACTGCTGAGTACGAG+AGG - tig0029127:14012-14031 Msa1440830:intron 60.0%
AGGAGAAGCCGAGCTATGGG+AGG - tig0029127:13877-13896 Msa1440830:intron 60.0%
ACGACGCAGGGAGGAGATGA+AGG - tig0029127:16056-16075 Msa1440830:CDS 60.0%
! GCTCCGATGATGATGAGGGG+AGG - tig0029127:16078-16097 Msa1440830:CDS 60.0%
!! TCTGGTGGTGGTGGTGGTGG+TGG - tig0029127:13342-13361 Msa1440830:three_prime_UTR 65.0%
!! CTGGTGGTGGTGGTGGTGGT+GGG - tig0029127:13343-13362 Msa1440830:three_prime_UTR 65.0%
!! GGTGGTGGTGGTGGTGGGTA+TGG - tig0029127:13348-13367 Msa1440830:three_prime_UTR 65.0%
!! GTGGTGGTGGTGGGTATGGG+AGG - tig0029127:13352-13371 Msa1440830:three_prime_UTR 65.0%
GGGGCCCAGGAGGGTGAATA+TGG - tig0029127:13474-13493 Msa1440830:three_prime_UTR 65.0%
!! GTATGGTGGTGGTGGGGCCC+AGG - tig0029127:13461-13480 Msa1440830:three_prime_UTR 70.0%
!! TGGTGGTGGTGGGGCCCAGG+AGG - tig0029127:13464-13483 Msa1440830:three_prime_UTR 75.0%
!! GGTGGTGGTGGGGCCCAGGA+GGG - tig0029127:13465-13484 Msa1440830:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
tig0029127 gene 13045 16604 13045 ID=Msa1440830;Name=Msa1440830
tig0029127 mRNA 13045 16604 13045 ID=Msa1440830-mRNA-1;Parent=Msa1440830;Name=Msa1440830-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|453|407
tig0029127 exon 13045 13584 13045 ID=Msa1440830-mRNA-1:exon:12468;Parent=Msa1440830-mRNA-1
tig0029127 exon 15468 16604 15468 ID=Msa1440830-mRNA-1:exon:12467;Parent=Msa1440830-mRNA-1
tig0029127 CDS 15468 16604 15468 ID=Msa1440830-mRNA-1:cds;Parent=Msa1440830-mRNA-1
tig0029127 CDS 13498 13584 13498 ID=Msa1440830-mRNA-1:cds;Parent=Msa1440830-mRNA-1
tig0029127 three_prime_UTR 13045 13497 13045 ID=Msa1440830-mRNA-1:three_prime_utr;Parent=Msa1440830-mRNA-1
Gene Sequence

>Msa1440830

ATGTCATACTTCACTCGTGGCGGAAACGGCGACGAAAGCGTCGACGATTTCGACGAATACGATCCAACACCATACGGTGGTGGATACGACATTCACCTTACCTACGGTAGACCAATTCCACCTTCCGATGAAACATGTTACCCATCAGGTTCATCAAACAATGATTTTGATTATGATCGTCCTCAATTTGAATCTTATGCTCAACCTTCTGCTTATGGTGATGAAGCTCTTGCTACTGAGTATAGTAGCTATTCTAGACCTAAACCTAGACCTGCTCCTAGTGGTTTTCATCCTGAATCTGGTGGTGGTGGTGGTGGTGGGTATGGGAGGAAACAAGGATCTGGGTATGGTGGTCAAGAATCTGAAATTGGATCTGGGTATGGTGGGAGGAAGCAAGAGGGTGAATATGGATCTGGGTATGGTGGTGGTGGGGCCCAGGAGGGTGAATATGGATCTGGGTATGGTGGAAGGAAGCAAGATTCTGAATTTGGATCTGGGTATGGGAGAAAGAATGAGGAAAGTGAATATGGGTCTGGTTATGGAGGAAGGAAGCAAGAATCAGGATATGGTGGGGCCCAGGAGTCTGAATATGGGAGAAAGAATGAGGAAAGTGATTATGGGTCTGGTTATGGTGGGAGGAAGCAAGAATCTGGATATGGGTCTGGATATGGTGGGAGGAAGAATGAGGAGGAGAGTGAGGGTTATGGGAGGAAGAATGAGGAGGAGAGTGAGGGTTATGGGAGGAAGAAGAGTGGTTATGGGGAGGAAGAAGGGTATGGAGGAGGGAGGAGTGAGTATGAGAGGAAGCCTAGCTATGGAAGGAGTGACGATGAGGAGAAGCCGAGCTATGGGAGGAAAACTAGCTATGGACGGAGTGATGAGGAGGAGAAGCCGAGCTATGGGAGGACTGAGTATGAGAGGAAACCTAGCTATGGAAGGAGTGATGATGAGGAGAAGCCAAGCTATGGGAGGACTGCTGAGTACGAGAGGAAACCTAGCTATGGAAGGAGTGATGATGAGGAGAAGCCGAGCTATGGGAGGAAAACTAGCTATGGAAGGAGTGATGATGAGGAGAAACCGAGCTATGGTTATGAGAGGCGTGATGATGATGATGAGGGATATGGTCGTAAGAAATATGGAGGAGATGAAGGCTCCGATGATGATGAGGGGAGGAAGAAGCATCACCACAAGAGTCACCACCGCAAGAGTTATGATGACGAGTAA
Protein sequence

>Msa1440830

MSYFTRGGNGDESVDDFDEYDPTPYGGGYDIHLTYGRPIPPSDETCYPSGSSNNDFDYDRPQFESYAQPSAYGDEALATEYSSYSRPKPRPAPSGFHPESGGGGGGGYGRKQGSGYGGQESEIGSGYGGRKQEGEYGSGYGGGGAQEGEYGSGYGGRKQDSEFGSGYGRKNEESEYGSGYGGRKQESGYGGAQESEYGRKNEESDYGSGYGGRKQESGYGSGYGGRKNEEESEGYGRKNEEESEGYGRKKSGYGEEEGYGGGRSEYERKPSYGRSDDEEKPSYGRKTSYGRSDEEEKPSYGRTEYERKPSYGRSDDEEKPSYGRTAEYERKPSYGRSDDEEKPSYGRKTSYGRSDDEEKPSYGYERRDDDDEGYGRKKYGGDEGSDDDEGRKKHHHKSHHRKSYDDE*