AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0906340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0906340 MtrunA17_Chr6g0454231 47.486 358 91 7 3 274 29 375 8.56e-95 287
Msa0906340 MtrunA17_Chr6g0454211 52.584 329 77 8 1 274 121 425 2.84e-92 288
Msa0906340 MtrunA17_Chr6g0454211 73.913 92 23 1 2 93 539 629 8.13e-37 138
Msa0906340 MtrunA17_Chr6g0454211 70.667 75 22 0 94 168 693 767 1.02e-29 117
Msa0906340 MtrunA17_Chr6g0454321 68.664 217 20 2 94 262 404 620 3.22e-91 283
Msa0906340 MtrunA17_Chr6g0454321 93.548 93 6 0 1 93 248 340 1.05e-53 184
Msa0906340 MtrunA17_Chr6g0454321 66.667 111 34 1 164 274 28 135 1.62e-42 154
Msa0906340 MtrunA17_Chr6g0454301 41.071 392 109 11 1 274 1 388 2.23e-77 248
Msa0906340 MtrunA17_Chr6g0454301 88.172 93 11 0 1 93 501 593 1.42e-51 179
Msa0906340 MtrunA17_Chr6g0454301 81.333 75 14 0 94 168 657 731 7.92e-34 129
Msa0906340 MtrunA17_Chr6g0454221 96.774 93 3 0 1 93 1 93 5.87e-60 192
Msa0906340 MtrunA17_Chr6g0454221 68.421 95 29 1 91 185 154 247 3.17e-35 128
Msa0906340 MtrunA17_Chr6g0453951 50.216 231 51 6 1 168 298 527 8.68e-55 185
Msa0906340 MtrunA17_Chr6g0453951 67.568 111 36 0 164 274 75 185 8.04e-47 164
Msa0906340 MtrunA17_Chr8g0336331 90.323 93 9 0 1 93 247 339 8.50e-54 181
Msa0906340 MtrunA17_Chr8g0336331 63.063 111 37 2 164 274 28 134 1.35e-40 146
Msa0906340 MtrunA17_Chr8g0336331 85.333 75 11 0 94 168 403 477 1.40e-36 135
Msa0906340 MtrunA17_Chr6g0454281 72.072 111 31 0 164 274 28 138 4.24e-53 172
Msa0906340 MtrunA17_Chr6g0453981 89.130 92 9 1 1 92 121 211 7.86e-53 171
Msa0906340 MtrunA17_Chr6g0454341 92.308 91 7 0 3 93 250 340 9.58e-53 178
Msa0906340 MtrunA17_Chr6g0454341 65.766 111 35 1 164 274 28 135 2.50e-44 156
Msa0906340 MtrunA17_Chr6g0454341 86.076 79 11 0 90 168 400 478 1.87e-39 143
Msa0906340 MtrunA17_Chr3g0118751 44.828 203 76 3 3 169 244 446 6.35e-52 175
Msa0906340 MtrunA17_Chr3g0118751 48.649 111 52 2 164 274 24 129 5.77e-24 100
Msa0906340 MtrunA17_Chr6g0454291 77.885 104 23 0 171 274 32 135 6.28e-51 173
Msa0906340 MtrunA17_Chr6g0454291 77.174 92 20 1 2 93 249 339 2.08e-40 145
Msa0906340 MtrunA17_Chr6g0454291 74.684 79 20 0 90 168 399 477 6.32e-35 130
Msa0906340 MtrunA17_Chr6g0454251 70.270 111 33 0 164 274 25 135 6.40e-51 171
Msa0906340 MtrunA17_Chr6g0454251 75.000 92 22 1 2 93 249 339 2.41e-39 141
Msa0906340 MtrunA17_Chr6g0454141 48.485 231 55 9 1 168 251 480 8.79e-51 173
Msa0906340 MtrunA17_Chr6g0454141 67.568 111 36 0 164 274 28 138 3.80e-45 158
Msa0906340 MtrunA17_Chr3g0078841 87.097 93 12 0 1 93 248 340 4.31e-50 171
Msa0906340 MtrunA17_Chr3g0078841 69.369 111 31 1 164 274 28 135 5.19e-46 160
Msa0906340 MtrunA17_Chr3g0078841 79.747 79 16 0 90 168 400 478 2.45e-37 137
Msa0906340 MtrunA17_Chr6g0454401 75.000 112 27 1 164 274 28 139 8.20e-50 171
Msa0906340 MtrunA17_Chr6g0454401 86.022 93 12 1 1 93 252 343 4.46e-47 163
Msa0906340 MtrunA17_Chr6g0454401 77.215 79 18 0 90 168 403 481 1.09e-34 130
Msa0906340 MtrunA17_Chr5g0426401 42.489 233 68 5 2 170 83 313 1.06e-49 166
Msa0906340 MtrunA17_Chr6g0454351 71.171 111 32 0 164 274 30 140 4.43e-49 168
Msa0906340 MtrunA17_Chr6g0454351 76.000 75 18 0 94 168 391 465 3.84e-33 125
Msa0906340 MtrunA17_Chr6g0454351 64.516 93 15 2 1 93 253 327 7.30e-29 114
Msa0906340 MtrunA17_Chr5g0426431 42.241 232 68 5 1 168 249 478 5.60e-49 168
Msa0906340 MtrunA17_Chr5g0426431 54.464 112 45 3 164 274 30 136 2.00e-28 113
Msa0906340 MtrunA17_Chr3g0118721 39.149 235 78 3 3 172 60 294 2.22e-48 162
Msa0906340 MtrunA17_Chr6g0454201 45.415 229 61 5 3 168 254 481 7.79e-48 165
Msa0906340 MtrunA17_Chr6g0454201 72.115 104 29 0 171 274 36 139 2.57e-44 156
Msa0906340 MtrunA17_Chr6g0454331 68.142 113 34 1 164 274 25 137 1.12e-47 165
Msa0906340 MtrunA17_Chr6g0454331 76.087 92 21 1 2 93 251 341 6.69e-40 144
Msa0906340 MtrunA17_Chr6g0454331 80.000 75 15 0 94 168 405 479 2.24e-35 132
Msa0906340 MtrunA17_Chr6g0454361 75.962 104 25 0 171 274 36 139 1.18e-47 165
Msa0906340 MtrunA17_Chr6g0454361 78.261 92 19 1 2 93 253 343 9.74e-41 146
Msa0906340 MtrunA17_Chr6g0454361 76.000 75 18 0 94 168 407 481 6.79e-33 125
Msa0906340 MtrunA17_Chr6g0453941 84.946 93 13 1 1 93 174 265 3.38e-47 158
Msa0906340 MtrunA17_Chr5g0423981 70.370 108 32 0 164 271 28 135 6.77e-47 162
Msa0906340 MtrunA17_Chr5g0423981 79.570 93 18 1 1 93 216 307 1.25e-42 151
Msa0906340 MtrunA17_Chr5g0423981 68.354 79 25 0 90 168 367 445 1.03e-30 119
Msa0906340 MtrunA17_Chr6g0453961 69.369 111 34 0 164 274 37 147 1.34e-46 162
Msa0906340 MtrunA17_Chr6g0453961 79.570 93 18 1 1 93 261 352 3.69e-42 150
Msa0906340 MtrunA17_Chr6g0453961 67.089 79 26 0 90 168 412 490 2.33e-30 118
Msa0906340 MtrunA17_Chr3g0118711 39.224 232 76 3 3 169 251 482 3.03e-46 161
Msa0906340 MtrunA17_Chr3g0118711 43.243 111 58 2 164 274 31 136 2.62e-20 90.1
Msa0906340 MtrunA17_Chr3g0118771 38.793 232 77 3 3 169 259 490 3.89e-46 161
Msa0906340 MtrunA17_Chr3g0118771 47.748 111 53 2 164 274 39 144 2.46e-23 99.0
Msa0906340 MtrunA17_Chr6g0454181 67.568 111 36 0 164 274 28 138 4.27e-46 160
Msa0906340 MtrunA17_Chr6g0454181 78.495 93 19 1 1 93 251 342 5.92e-44 155
Msa0906340 MtrunA17_Chr6g0454181 70.886 79 23 0 90 168 402 480 3.31e-32 123
Msa0906340 MtrunA17_Chr7g0217881 71.845 103 29 0 172 274 36 138 1.35e-45 159
Msa0906340 MtrunA17_Chr7g0217881 82.796 93 15 1 1 93 233 324 1.03e-42 151
Msa0906340 MtrunA17_Chr7g0217881 75.641 78 19 0 91 168 385 462 8.19e-33 125
Msa0906340 MtrunA17_Chr6g0454191 70.536 112 32 1 164 274 28 139 1.35e-45 159
Msa0906340 MtrunA17_Chr6g0454191 80.645 93 17 1 1 93 252 343 3.43e-44 155
Msa0906340 MtrunA17_Chr6g0454191 72.152 79 22 0 90 168 403 481 5.75e-32 122
Msa0906340 MtrunA17_Chr6g0454121 82.796 93 15 1 1 93 250 341 3.34e-45 158
Msa0906340 MtrunA17_Chr6g0454121 63.462 104 37 1 171 274 35 137 6.05e-35 131
Msa0906340 MtrunA17_Chr6g0454121 67.089 79 26 0 90 168 401 479 6.09e-30 117
Msa0906340 MtrunA17_Chr6g0454151 71.154 104 30 0 171 274 35 138 4.35e-45 158
Msa0906340 MtrunA17_Chr6g0454151 78.495 93 19 1 1 93 249 340 1.65e-42 151
Msa0906340 MtrunA17_Chr6g0454151 72.000 75 21 0 94 168 404 478 7.53e-29 114
Msa0906340 MtrunA17_Chr6g0452771 62.712 118 44 0 157 274 21 138 4.63e-45 158
Msa0906340 MtrunA17_Chr6g0452771 76.344 93 21 1 1 93 251 342 3.24e-40 145
Msa0906340 MtrunA17_Chr6g0452771 77.333 75 17 0 94 168 406 480 1.88e-31 121
Msa0906340 MtrunA17_Chr6g0454261 68.468 111 35 0 164 274 28 138 2.25e-44 156
Msa0906340 MtrunA17_Chr6g0454261 78.495 93 19 1 1 93 251 342 2.03e-42 151
Msa0906340 MtrunA17_Chr6g0454261 76.000 75 18 0 94 168 406 480 6.08e-33 125
Msa0906340 MtrunA17_Chr6g0454131 80.645 93 17 1 1 93 250 341 3.73e-44 155
Msa0906340 MtrunA17_Chr6g0454131 64.423 104 36 1 171 274 35 137 2.25e-37 137
Msa0906340 MtrunA17_Chr6g0454131 65.823 79 27 0 90 168 401 479 1.17e-28 114
Msa0906340 MtrunA17_Chr3g0118671 36.864 236 84 3 3 173 244 479 3.47e-43 153
Msa0906340 MtrunA17_Chr3g0118671 47.748 111 53 2 164 274 24 129 4.10e-23 98.2
Msa0906340 MtrunA17_Chr8g0359821 73.786 103 26 1 1 103 249 350 4.34e-43 153
Msa0906340 MtrunA17_Chr8g0359821 67.568 111 34 2 164 274 28 136 5.05e-40 144
Msa0906340 MtrunA17_Chr8g0359821 72.000 75 21 0 94 168 404 478 1.12e-30 119
Msa0906340 MtrunA17_Chr6g0454171 44.749 219 65 7 1 168 97 310 5.84e-43 149
Msa0906340 MtrunA17_Chr8g0336271 63.063 111 37 2 164 274 28 134 4.98e-42 145
Msa0906340 MtrunA17_Chr3g0118701 36.207 232 83 3 3 169 253 484 1.07e-41 149
Msa0906340 MtrunA17_Chr3g0118701 45.763 118 55 3 157 274 30 138 2.84e-22 95.9
Msa0906340 MtrunA17_Chr6g0454271 67.961 103 32 1 1 103 58 159 3.48e-41 143
Msa0906340 MtrunA17_Chr6g0454271 70.667 75 22 0 94 168 213 287 3.12e-32 120
Msa0906340 MtrunA17_Chr4g0050341 36.522 230 79 3 2 164 258 487 2.45e-40 145
Msa0906340 MtrunA17_Chr4g0050341 44.144 111 59 2 164 274 37 144 1.22e-19 88.2
Msa0906340 MtrunA17_Chr5g0427561 81.579 76 14 0 93 168 10 85 4.81e-38 129
Msa0906340 MtrunA17_Chr3g0118691 35.865 237 83 5 3 172 253 487 4.60e-36 134
Msa0906340 MtrunA17_Chr3g0118691 44.068 118 57 3 157 274 30 138 2.12e-21 93.2
Msa0906340 MtrunA17_Chr3g0092641 63.736 91 32 1 1 91 249 338 4.34e-33 125
Msa0906340 MtrunA17_Chr3g0092641 52.679 112 47 3 164 274 30 136 7.68e-27 108
Msa0906340 MtrunA17_Chr3g0092641 48.000 75 37 2 95 168 405 478 3.09e-16 78.2
Msa0906340 MtrunA17_Chr6g0454111 70.370 81 23 1 1 81 104 183 1.06e-32 118
Msa0906340 MtrunA17_Chr6g0454371 72.000 75 21 0 94 168 97 171 8.78e-31 113
Msa0906340 MtrunA17_Chr6g0454371 84.848 33 5 0 61 93 1 33 3.53e-12 63.5
Msa0906340 MtrunA17_Chr8g0355011 66.667 78 26 0 91 168 285 362 2.62e-30 116
Msa0906340 MtrunA17_Chr8g0355011 75.000 48 12 0 46 93 177 224 6.10e-16 77.0
Msa0906340 MtrunA17_Chr5g0426411 51.786 112 48 3 164 274 30 136 5.32e-29 108
Msa0906340 MtrunA17_Chr2g0278711 55.789 95 42 0 1 95 244 338 7.17e-29 114
Msa0906340 MtrunA17_Chr2g0278711 52.252 111 45 2 164 274 29 131 1.26e-27 110
Msa0906340 MtrunA17_Chr3g0118661 50.485 103 46 2 3 104 251 349 2.18e-24 101
Msa0906340 MtrunA17_Chr3g0118661 43.220 118 58 3 157 274 28 136 4.91e-20 89.4
Msa0906340 MtrunA17_Chr3g0118661 46.667 75 40 0 95 169 407 481 2.47e-11 63.5
Msa0906340 MtrunA17_Chr5g0412111 53.409 88 40 1 2 89 236 322 3.00e-21 92.8
Msa0906340 MtrunA17_Chr7g0218841 28.761 226 84 7 3 164 225 437 9.64e-19 85.5
Msa0906340 MtrunA17_Chr7g0218831 27.876 226 86 7 3 164 224 436 1.01e-18 85.5
Msa0906340 MtrunA17_Chr5g0412131 50.562 89 42 1 3 89 242 330 1.36e-16 79.3
Msa0906340 MtrunA17_Chr3g0112771 43.333 90 38 2 5 91 231 310 6.95e-16 77.0
Msa0906340 MtrunA17_Chr6g0454241 62.963 54 19 1 127 179 1 54 1.99e-15 69.7
Msa0906340 MtrunA17_Chr5g0412101 46.667 90 46 1 2 89 242 331 3.58e-15 75.1
Msa0906340 MtrunA17_Chr7g0218791 27.434 226 85 10 3 164 231 441 6.40e-15 74.3
Msa0906340 MtrunA17_Chr7g0249961 24.464 233 112 6 1 170 31 262 8.96e-15 72.4
Msa0906340 MtrunA17_Chr3g0112761 52.632 57 27 0 35 91 251 307 1.39e-14 73.2
Msa0906340 MtrunA17_Chr7g0249981 24.609 256 124 8 1 192 238 488 2.56e-14 72.4
Msa0906340 MtrunA17_Chr7g0218821 41.667 84 39 1 3 86 235 308 2.76e-14 72.4
Msa0906340 MtrunA17_Chr8g0336261 73.171 41 11 0 94 134 97 137 4.46e-14 67.8
Msa0906340 MtrunA17_Chr8g0336261 87.879 33 4 0 61 93 1 33 1.07e-13 66.6
Msa0906340 MtrunA17_Chr5g0393591 25.405 185 86 2 35 167 251 435 6.34e-14 71.2
Msa0906340 MtrunA17_Chr1g0207981 40.230 87 45 3 1 85 242 323 3.45e-13 69.3
Msa0906340 MtrunA17_Chr7g0218811 42.857 84 38 1 3 86 234 307 6.08e-13 68.2
Msa0906340 MtrunA17_Chr3g0118731 46.753 77 36 2 198 274 28 99 1.10e-12 64.7
Msa0906340 MtrunA17_Chr4g0053501 35.714 84 48 2 5 86 232 311 1.62e-12 67.0
Msa0906340 MtrunA17_Chr7g0250001 38.636 88 50 3 1 86 219 304 2.80e-12 66.2
Msa0906340 MtrunA17_Chr4g0053321 35.714 84 48 2 5 86 247 326 3.83e-12 66.2
Msa0906340 MtrunA17_Chr8g0365811 40.244 82 44 2 5 85 723 800 5.87e-12 65.9
Msa0906340 MtrunA17_Chr6g0464881 38.554 83 50 1 4 85 228 310 8.29e-12 65.1
Msa0906340 MtrunA17_Chr4g0044511 54.902 51 23 0 35 85 294 344 9.03e-12 65.1
Msa0906340 MtrunA17_Chr5g0401721 37.931 87 47 2 5 88 240 322 1.35e-11 64.3
Msa0906340 MtrunA17_Chr8g0336691 39.286 84 38 2 3 85 1145 1216 5.19e-11 63.2
Msa0906340 MtrunA17_Chr5g0414331 39.535 86 50 2 1 85 224 308 5.29e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0906340 AT1G22370.1 38.197 233 79 5 1 168 74 306 6.68e-40 141
Msa0906340 AT1G22400.1 35.193 233 86 4 1 168 250 482 1.10e-39 144
Msa0906340 AT1G22400.1 51.351 111 49 2 164 274 31 136 8.65e-29 114
Msa0906340 AT1G22370.2 38.197 233 79 5 1 168 244 476 3.07e-38 140
Msa0906340 AT1G22370.2 49.550 111 51 2 164 274 31 136 8.84e-28 111
Msa0906340 AT1G22360.1 36.052 233 84 4 1 168 246 478 1.44e-37 138
Msa0906340 AT1G22360.1 48.649 111 52 2 164 274 28 133 8.82e-27 108
Msa0906340 AT1G78270.1 32.906 234 91 4 1 168 248 481 2.73e-36 135
Msa0906340 AT1G78270.1 50.450 111 50 2 164 274 31 136 1.11e-27 111
Msa0906340 AT1G22380.1 35.745 235 82 6 1 168 249 481 4.13e-35 132
Msa0906340 AT1G22380.1 50.450 111 50 3 164 274 31 136 9.79e-26 105
Msa0906340 AT1G22360.2 34.335 233 76 5 1 168 246 466 1.20e-30 119
Msa0906340 AT1G22360.2 48.649 111 52 2 164 274 28 133 1.02e-26 108
Msa0906340 AT1G22340.1 48.649 111 52 2 164 274 31 136 9.03e-28 111
Msa0906340 AT1G22340.1 51.087 92 44 1 1 91 249 340 6.19e-25 103
Msa0906340 AT1G22340.1 46.753 77 40 1 93 168 406 482 1.41e-16 79.7
Msa0906340 AT3G46720.1 27.064 218 91 3 5 164 230 437 1.80e-21 93.6
Msa0906340 AT1G05680.1 27.350 234 99 7 4 170 222 451 1.27e-18 85.5
Msa0906340 AT5G59580.1 44.828 87 38 1 5 91 230 306 1.69e-17 82.0
Msa0906340 AT3G46650.1 40.909 88 42 1 4 91 214 291 2.75e-17 81.6
Msa0906340 AT1G05675.1 27.083 192 77 4 36 164 258 449 5.39e-17 80.9
Msa0906340 AT2G31750.1 25.439 228 104 6 8 169 229 456 7.01e-17 80.5
Msa0906340 AT2G31750.2 25.439 228 104 6 8 169 229 456 7.63e-17 80.5
Msa0906340 AT2G23250.1 28.261 230 92 6 5 167 212 435 1.05e-16 79.7
Msa0906340 AT5G59590.1 40.909 88 42 1 5 92 232 309 1.14e-16 79.7
Msa0906340 AT3G46700.1 42.045 88 40 2 5 91 226 303 1.80e-16 79.3
Msa0906340 AT3G46690.1 41.379 87 42 2 5 91 231 308 1.17e-15 76.6
Msa0906340 AT2G15490.3 28.511 235 92 6 6 167 246 477 3.01e-15 75.9
Msa0906340 AT3G46680.1 41.379 87 41 1 5 91 232 308 6.00e-15 74.7
Msa0906340 AT2G15490.1 28.151 238 92 6 6 167 246 480 7.85e-15 74.3
Msa0906340 AT2G15480.1 28.085 235 93 6 6 167 249 480 8.38e-15 74.3
Msa0906340 AT5G38010.1 36.957 92 49 2 5 96 236 318 2.92e-14 72.8
Msa0906340 AT5G38040.1 35.227 88 48 1 5 92 232 310 9.39e-14 71.2
Msa0906340 AT5G05870.1 40.230 87 44 1 5 91 235 313 1.35e-13 70.9
Msa0906340 AT5G05900.1 42.424 66 38 0 28 93 250 315 1.74e-13 70.5
Msa0906340 AT2G15480.2 27.572 243 90 7 8 167 251 490 1.74e-13 70.5
Msa0906340 AT5G37950.2 35.870 92 50 2 5 96 202 284 3.97e-13 68.9
Msa0906340 AT5G37950.1 35.870 92 50 2 5 96 208 290 4.33e-13 68.9
Msa0906340 AT3G46660.1 37.500 88 45 1 5 92 238 315 7.19e-13 68.6
Msa0906340 AT3G02100.1 27.477 222 91 8 3 164 245 456 1.27e-12 67.8
Msa0906340 AT2G28080.1 24.576 236 101 7 5 173 252 477 1.42e-12 67.8
Msa0906340 AT3G11340.1 47.368 57 30 0 35 91 247 303 1.86e-12 67.4
Msa0906340 AT2G26480.1 37.079 89 44 2 5 91 225 303 2.34e-12 67.0
Msa0906340 AT3G55700.1 38.636 88 41 3 5 91 234 309 4.13e-12 66.2
Msa0906340 AT4G01070.1 40.964 83 38 1 3 85 234 305 5.60e-12 65.9
Msa0906340 AT5G05880.1 38.356 73 45 0 19 91 235 307 6.35e-12 65.9
Msa0906340 AT4G01070.2 40.964 83 38 1 3 85 234 305 8.41e-12 65.1
Msa0906340 AT5G05860.1 43.548 62 35 0 31 92 246 307 2.27e-11 63.9
Msa0906340 AT4G15500.1 36.585 82 47 1 7 88 240 316 2.60e-11 63.9
Msa0906340 AT3G46670.1 35.227 88 47 1 5 92 231 308 2.74e-11 63.9
Msa0906340 AT4G34135.2 49.020 51 26 0 35 85 276 326 5.02e-11 62.8
Msa0906340 AT4G34131.1 38.554 83 48 2 8 90 251 330 8.08e-11 62.4
Msa0906340 AT4G34135.1 49.020 51 26 0 35 85 276 326 8.71e-11 62.4

Find 76 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAACCATTAAGAGAATT+AGG 0.152420 6_2:+4924705 None:intergenic
AGAGACCCTAATTCTCTTAA+TGG 0.232417 6_2:-4924711 Msa0906340:CDS
ATTCATCAATTGGATTCTTT+AGG 0.307043 6_2:-4927438 Msa0906340:CDS
TCCGTTGTTTATGTGAATTT+TGG 0.307503 6_2:-4927354 Msa0906340:CDS
CAAATAAATCTACAGTTTGT+TGG 0.321938 6_2:+4927028 None:intergenic
ATTCTTTAGGTTCCAACCTT+TGG 0.323441 6_2:-4927425 Msa0906340:CDS
ATTGATGAATTTGTGGAGTT+TGG 0.329616 6_2:+4927451 None:intergenic
AGGTTATGTAAAAGCCTCTT+AGG 0.341194 6_2:+4924775 None:intergenic
AACTCCACAAATTCATCAAT+TGG 0.344444 6_2:-4927448 Msa0906340:CDS
ATTTGTAATGAATGGGAGAT+TGG 0.359619 6_2:-4927010 Msa0906340:CDS
GAACCTGGACAAAGTGATTA+AGG 0.362862 6_2:-4926834 Msa0906340:CDS
GTTGGAATTTGCTTGGGGTT+TGG 0.365245 6_2:-4927301 Msa0906340:CDS
TCATAAACTAAGCAAGTAAC+TGG 0.367424 6_2:+4924513 None:intergenic
GCAACTGTTGGAATTTGCTT+GGG 0.371369 6_2:-4927307 Msa0906340:CDS
GTAGATTTATTTGTAATGAA+TGG 0.382641 6_2:-4927018 Msa0906340:CDS
TTTCCTTCTCTTTACCCCAT+TGG 0.392683 6_2:-4927495 Msa0906340:CDS
TAGATTTATTTGTAATGAAT+GGG 0.407079 6_2:-4927017 Msa0906340:CDS
AGCAACTGTTGGAATTTGCT+TGG 0.413433 6_2:-4927308 Msa0906340:CDS
ACATCACCATCACCATCTAT+TGG 0.415465 6_2:+4924645 None:intergenic
TGAAACCATTAAGAGAATTA+GGG 0.419442 6_2:+4924706 None:intergenic
GAAGTGATAGCTGGAGATAA+AGG 0.430452 6_2:-4926935 Msa0906340:CDS
ATTAGGCCTGATCTTGTCAT+TGG 0.431441 6_2:-4927249 Msa0906340:CDS
GAATCCAATTGATGAATTTG+TGG 0.435101 6_2:+4927444 None:intergenic
GGAGTTTGGTTTAATAATGA+AGG 0.439181 6_2:+4927465 None:intergenic
GGTTTAATAATGAAGGTAAA+GGG 0.442151 6_2:+4927472 None:intergenic
GATGGTTTAACTCCAATAGA+TGG 0.442286 6_2:-4924657 Msa0906340:CDS
AATGAAGGTAAAGGGCCAAT+GGG 0.442908 6_2:+4927480 None:intergenic
CTCCATGAGTCTTCCACTGC+TGG 0.449582 6_2:-4924546 Msa0906340:CDS
GCAAAGGTTCTTCACCTAAG+AGG 0.455739 6_2:-4924789 Msa0906340:intron
TCTATTGGAGTTAAACCATC+TGG 0.456927 6_2:+4924660 None:intergenic
TGCCATCTTCTTCAACTCCA+TGG 0.457949 6_2:+4926892 None:intergenic
AGGCCTGATCTTGTCATTGG+TGG 0.464524 6_2:-4927246 Msa0906340:CDS
TGGTTTAATAATGAAGGTAA+AGG 0.468725 6_2:+4927471 None:intergenic
TTAAGCAACTTGTATAGTAA+AGG 0.469755 6_2:+4924479 None:intergenic
TTACTTGCTTAGTTTATGAC+TGG 0.469984 6_2:-4924509 Msa0906340:CDS
AGTATCTACTTTCCAAAGGT+TGG 0.470062 6_2:+4927413 None:intergenic
GCAAATTCCAACAGTTGCTC+TGG 0.484462 6_2:+4927312 None:intergenic
AACAACGGATCCCGGCTCCT+TGG 0.486045 6_2:+4927368 None:intergenic
GAGCCACCAATGACAAGATC+AGG 0.496376 6_2:+4927243 None:intergenic
CTAGCAAGAAGTTCGCGAAA+TGG 0.501554 6_2:+4924570 None:intergenic
AGGAAAGAAGATGAGGCAAA+AGG 0.504752 6_2:-4926915 Msa0906340:CDS
CTGATCAATGAAGTGATAGC+TGG 0.507213 6_2:-4926944 Msa0906340:CDS
CAAGAAGTTCGCGAAATGGT+TGG 0.507665 6_2:+4924574 None:intergenic
TTCACATAAACAACGGATCC+CGG 0.510656 6_2:+4927360 None:intergenic
TCTTGAATGGCTTGAATCCA+AGG 0.512622 6_2:-4927385 Msa0906340:CDS
TAATGAAGGTAAAGGGCCAA+TGG 0.517365 6_2:+4927479 None:intergenic
CCTCCTTAATCACTTTGTCC+AGG 0.523405 6_2:+4926831 None:intergenic
ATGGCTTGAATCCAAGGAGC+CGG 0.525604 6_2:-4927379 Msa0906340:CDS
TAATGAATGGGAGATTGGTA+TGG 0.527344 6_2:-4927005 Msa0906340:CDS
GACCAGCAGTGGAAGACTCA+TGG 0.537771 6_2:+4924544 None:intergenic
CGATACAAATGTGAAGAGAA+AGG 0.538783 6_2:-4926978 Msa0906340:CDS
GGCCATGGAGTTGAAGAAGA+TGG 0.539500 6_2:-4926894 Msa0906340:CDS
GAAGATGAGGCAAAAGGCCA+TGG 0.548548 6_2:-4926909 Msa0906340:CDS
TGGCTTGAATCCAAGGAGCC+GGG 0.553822 6_2:-4927378 Msa0906340:CDS
AAATGTGAAGAGAAAGGAGT+TGG 0.554578 6_2:-4926972 Msa0906340:CDS
CAACTGTTGGAATTTGCTTG+GGG 0.557924 6_2:-4927306 Msa0906340:CDS
TAGATACTGAGTGTCTTGAA+TGG 0.573247 6_2:-4927398 Msa0906340:CDS
TGCTTCGAGACTATTCCAGA+TGG 0.574422 6_2:-4924675 Msa0906340:CDS
GAAGTTCGCGAAATGGTTGG+AGG 0.595139 6_2:+4924577 None:intergenic
TGGAGGGATAAGACCAGCAG+TGG 0.600705 6_2:+4924533 None:intergenic
GGGCCAATGGGGTAAAGAGA+AGG 0.608383 6_2:+4927492 None:intergenic
GGAGTTGAAGAAGATGGCAA+TGG 0.609106 6_2:-4926888 Msa0906340:CDS
TGGTTGTTCATACATGAACC+TGG 0.610957 6_2:-4926849 Msa0906340:CDS
GCCAAAATTCACATAAACAA+CGG 0.615682 6_2:+4927353 None:intergenic
TATGACACCAGAGCAACTGT+TGG 0.617761 6_2:-4927319 Msa0906340:CDS
GAGATAAAGGAAAGAAGATG+AGG 0.620070 6_2:-4926922 Msa0906340:CDS
TAAACTAAGCAAGTAACTGG+AGG 0.624984 6_2:+4924516 None:intergenic
AAACTAAGCAAGTAACTGGA+GGG 0.625013 6_2:+4924517 None:intergenic
ACTCAGTATCTACTTTCCAA+AGG 0.626825 6_2:+4927409 None:intergenic
GCAATGGAGAACACTAGACC+AGG 0.653200 6_2:-4926872 Msa0906340:CDS
TTCATGTATGAACAACCACC+TGG 0.656051 6_2:+4926854 None:intergenic
TTAACTCCAATAGATGGTGA+TGG 0.675398 6_2:-4924651 Msa0906340:CDS
ATGAAGGTAAAGGGCCAATG+GGG 0.685143 6_2:+4927481 None:intergenic
ATTGTACTCAGTGTTGACAA+AGG 0.709081 6_2:+4924755 None:intergenic
ATGGAGAACACTAGACCAGG+TGG 0.714990 6_2:-4926869 Msa0906340:CDS
CCTGGACAAAGTGATTAAGG+AGG 0.733769 6_2:-4926831 Msa0906340:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTAAAACATATTTTTATA+GGG + chr6_2:4925542-4925561 None:intergenic 10.0%
!!! AAACTAAAACATATTTTTAT+AGG + chr6_2:4925543-4925562 None:intergenic 10.0%
!!! AATATCTAAATTTTTGTTTT+TGG - chr6_2:4925574-4925593 Msa0906340:intron 10.0%
!!! TAAATATGAATAGATTTTAT+AGG - chr6_2:4925722-4925741 Msa0906340:intron 10.0%
!!! AAATATGAATAGATTTTATA+GGG - chr6_2:4925723-4925742 Msa0906340:intron 10.0%
!!! AAATATATAATCTTTTGTTT+TGG + chr6_2:4925770-4925789 None:intergenic 10.0%
!!! AAGATATGTTTATTTTAAAA+TGG + chr6_2:4926922-4926941 None:intergenic 10.0%
!! TAGATTTATTTGTAATGAAT+GGG - chr6_2:4924960-4924979 Msa0906340:intron 15.0%
!! TTGAATATTAAAATAGTACA+TGG + chr6_2:4925300-4925319 None:intergenic 15.0%
!!! TACTATTTTAATATTCAACT+TGG - chr6_2:4925302-4925321 Msa0906340:intron 15.0%
!!! ACTATTTTAATATTCAACTT+GGG - chr6_2:4925303-4925322 Msa0906340:intron 15.0%
!! CAAAAATTTAGATATTTAGA+AGG + chr6_2:4925570-4925589 None:intergenic 15.0%
!! ATACCTTATATACATATTAA+AGG - chr6_2:4925812-4925831 Msa0906340:intron 15.0%
!! CATAAAGAGTAAAAAATTAA+AGG - chr6_2:4925844-4925863 Msa0906340:intron 15.0%
!! GAAAATAGAGAAAATAAAAA+AGG + chr6_2:4926969-4926988 None:intergenic 15.0%
!! GTAGATTTATTTGTAATGAA+TGG - chr6_2:4924959-4924978 Msa0906340:intron 20.0%
!!! ATTTTACTACTTTATTTACC+TGG - chr6_2:4925219-4925238 Msa0906340:intron 20.0%
!!! AAGCTTCAAATATTTTTCAT+AGG - chr6_2:4925340-4925359 Msa0906340:intron 20.0%
!!! AGCTTCAAATATTTTTCATA+GGG - chr6_2:4925341-4925360 Msa0906340:intron 20.0%
!!! ATTAATTGAAGCTTTGAATA+AGG - chr6_2:4925383-4925402 Msa0906340:intron 20.0%
!! TTAAGATTCTAATATGCAAA+TGG - chr6_2:4925480-4925499 Msa0906340:intron 20.0%
!!! CAAATTAATATCAAGCATTT+TGG - chr6_2:4925509-4925528 Msa0906340:intron 20.0%
!! CAAATATTCTACATATTACA+AGG + chr6_2:4925652-4925671 None:intergenic 20.0%
!! AGGACTATAATGAATATTAT+CGG - chr6_2:4925691-4925710 Msa0906340:intron 20.0%
!! AGTCCTTTAATATGTATATA+AGG + chr6_2:4925818-4925837 None:intergenic 20.0%
!! TATACAAGTTAAGAGAATTT+AGG - chr6_2:4925903-4925922 Msa0906340:intron 20.0%
!!! ATATGTCAAAATTTTAGAGA+GGG - chr6_2:4926051-4926070 Msa0906340:intron 20.0%
!! TAGTAAACTGAAATTTATGA+GGG - chr6_2:4926197-4926216 Msa0906340:intron 20.0%
!! TGATAATATCTTCTATTGAA+CGG - chr6_2:4926244-4926263 Msa0906340:intron 20.0%
!!! AGATATAGTTTAAGATTTGT+TGG - chr6_2:4926292-4926311 Msa0906340:intron 20.0%
!!! ATTTTGACAATAAAGAAACT+TGG + chr6_2:4926333-4926352 None:intergenic 20.0%
!!! AAAAACAGAAAATATTTTCG+TGG + chr6_2:4926360-4926379 None:intergenic 20.0%
!!! ATACAACAAAACCATTTTTT+TGG - chr6_2:4926619-4926638 Msa0906340:intron 20.0%
!! GAATAATTCAAATCAATTTC+TGG - chr6_2:4926815-4926834 Msa0906340:intron 20.0%
! GGTTTAATAATGAAGGTAAA+GGG + chr6_2:4924508-4924527 None:intergenic 25.0%
! TGGTTTAATAATGAAGGTAA+AGG + chr6_2:4924509-4924528 None:intergenic 25.0%
! ATTCATCAATTGGATTCTTT+AGG - chr6_2:4924539-4924558 Msa0906340:CDS 25.0%
! CAAAAATGGTTTATTGCAAT+TGG + chr6_2:4924702-4924721 None:intergenic 25.0%
!!! ATTGCAATAAACCATTTTTG+TGG - chr6_2:4924702-4924721 Msa0906340:CDS 25.0%
! ACAAATGAAATTTCAGATAG+AGG - chr6_2:4924779-4924798 Msa0906340:CDS 25.0%
! CAAATAAATCTACAGTTTGT+TGG + chr6_2:4924952-4924971 None:intergenic 25.0%
! AAAAATTAGAAACATACACC+AGG + chr6_2:4925240-4925259 None:intergenic 25.0%
! TTCAACTTGGGATTAATATT+AGG - chr6_2:4925315-4925334 Msa0906340:intron 25.0%
!! CAATATCAATCAATTTTGCA+TGG + chr6_2:4925621-4925640 None:intergenic 25.0%
! CATGCAAAATTGATTGATAT+TGG - chr6_2:4925619-4925638 Msa0906340:intron 25.0%
!!! CATTATAGTCCTTATTTTGA+GGG + chr6_2:4925683-4925702 None:intergenic 25.0%
!!! TCATTATAGTCCTTATTTTG+AGG + chr6_2:4925684-4925703 None:intergenic 25.0%
! GGACTATAATGAATATTATC+GGG - chr6_2:4925692-4925711 Msa0906340:intron 25.0%
!! TGTATATAAGGTATCAACTA+AGG + chr6_2:4925806-4925825 None:intergenic 25.0%
! AAAACATTTGTCTTTCAACA+AGG + chr6_2:4926019-4926038 None:intergenic 25.0%
!!! CATATGTCAAAATTTTAGAG+AGG - chr6_2:4926050-4926069 Msa0906340:intron 25.0%
! GTAGTAAACTGAAATTTATG+AGG - chr6_2:4926196-4926215 Msa0906340:intron 25.0%
!! TTTTTGCTTGTTCTTTTGTT+TGG - chr6_2:4926375-4926394 Msa0906340:intron 25.0%
!!! AAAATGGTTTTGTTGTATCA+TGG + chr6_2:4926617-4926636 None:intergenic 25.0%
!!! ACTCTTTTCTTTTTCACTAA+GGG - chr6_2:4926735-4926754 Msa0906340:intron 25.0%
! TCACAATTTATGTTTCGAAT+CGG + chr6_2:4926797-4926816 None:intergenic 25.0%
! GTTTCAAAGTCAATAATCTT+TGG - chr6_2:4926854-4926873 Msa0906340:CDS 25.0%
! AAGGATCAAATTGTGTTAAT+TGG - chr6_2:4926889-4926908 Msa0906340:CDS 25.0%
! TATCTCAATTATTAAACCAC+TGG - chr6_2:4927019-4927038 Msa0906340:CDS 25.0%
! ATATGAAGTATAGAGACAAA+GGG + chr6_2:4927050-4927069 None:intergenic 25.0%
! AATTGGAAATGGAATCAATA+CGG + chr6_2:4927129-4927148 None:intergenic 25.0%
! ATATTTCCTTGAATTGGAAA+TGG + chr6_2:4927140-4927159 None:intergenic 25.0%
! TGAAACCATTAAGAGAATTA+GGG + chr6_2:4927274-4927293 None:intergenic 25.0%
! TTAAGCAACTTGTATAGTAA+AGG + chr6_2:4927501-4927520 None:intergenic 25.0%
! GGAGTTTGGTTTAATAATGA+AGG + chr6_2:4924515-4924534 None:intergenic 30.0%
ATTGATGAATTTGTGGAGTT+TGG + chr6_2:4924529-4924548 None:intergenic 30.0%
AACTCCACAAATTCATCAAT+TGG - chr6_2:4924529-4924548 Msa0906340:CDS 30.0%
GAATCCAATTGATGAATTTG+TGG + chr6_2:4924536-4924555 None:intergenic 30.0%
! TCCGTTGTTTATGTGAATTT+TGG - chr6_2:4924623-4924642 Msa0906340:CDS 30.0%
GCCAAAATTCACATAAACAA+CGG + chr6_2:4924627-4924646 None:intergenic 30.0%
!! AACCATTTTTGTGGATCATT+AGG - chr6_2:4924711-4924730 Msa0906340:CDS 30.0%
TGGTTTAATACTTTCTCTTG+TGG + chr6_2:4924826-4924845 None:intergenic 30.0%
ATTTGTAATGAATGGGAGAT+TGG - chr6_2:4924967-4924986 Msa0906340:intron 30.0%
TAACCTATAGTAACTGTGAA+AGG + chr6_2:4925410-4925429 None:intergenic 30.0%
!! GATTTTAGTCCCTCAAAATA+AGG - chr6_2:4925671-4925690 Msa0906340:intron 30.0%
!! TCATTCAGGTTGTGATTTAT+GGG + chr6_2:4925873-4925892 None:intergenic 30.0%
! TATATGTTTTCACCTCATTC+AGG + chr6_2:4925887-4925906 None:intergenic 30.0%
TCCAAATTTACCAATCAAGA+GGG + chr6_2:4925960-4925979 None:intergenic 30.0%
ATCCAAATTTACCAATCAAG+AGG + chr6_2:4925961-4925980 None:intergenic 30.0%
! ATTTTATGCAACTGTGACTT+TGG - chr6_2:4925979-4925998 Msa0906340:intron 30.0%
GTGATATCCAAAAAAAAGAG+TGG - chr6_2:4926086-4926105 Msa0906340:intron 30.0%
GCAAATTGATTAAACAACAC+TGG + chr6_2:4926113-4926132 None:intergenic 30.0%
TTCTGTACAACTAGAATCTT+TGG - chr6_2:4926143-4926162 Msa0906340:intron 30.0%
AATATCTTCTATTGAACGGT+TGG - chr6_2:4926248-4926267 Msa0906340:intron 30.0%
ATATCTTACCAATACTTGCA+CGG + chr6_2:4926278-4926297 None:intergenic 30.0%
!! AGCAATCACAAGTTCTAAAA+TGG - chr6_2:4926477-4926496 Msa0906340:intron 30.0%
!!! GCTTTAATGTGGTTTTTTAG+CGG + chr6_2:4926539-4926558 None:intergenic 30.0%
TTGTTGTATCATGGATAACA+AGG + chr6_2:4926608-4926627 None:intergenic 30.0%
TCGTAAGGAAACCAAAAAAA+TGG + chr6_2:4926633-4926652 None:intergenic 30.0%
!! TGTAACACCATTCGTTTTTA+AGG + chr6_2:4926695-4926714 None:intergenic 30.0%
! GGTGTTACAAATACTGTTAT+AGG - chr6_2:4926706-4926725 Msa0906340:intron 30.0%
ACAAATACTGTTATAGGACT+TGG - chr6_2:4926712-4926731 Msa0906340:intron 30.0%
!! GACTCTTTTCTTTTTCACTA+AGG - chr6_2:4926734-4926753 Msa0906340:intron 30.0%
CAATAATCTTTGGCATAATG+AGG - chr6_2:4926864-4926883 Msa0906340:CDS 30.0%
GATATGAAGTATAGAGACAA+AGG + chr6_2:4927051-4927070 None:intergenic 30.0%
TTGATTCCATTTCCAATTCA+AGG - chr6_2:4927131-4927150 Msa0906340:intron 30.0%
GGATTGATATTTCCTTGAAT+TGG + chr6_2:4927146-4927165 None:intergenic 30.0%
GTGAAACCATTAAGAGAATT+AGG + chr6_2:4927275-4927294 None:intergenic 30.0%
TCATAAACTAAGCAAGTAAC+TGG + chr6_2:4927467-4927486 None:intergenic 30.0%
TTACTTGCTTAGTTTATGAC+TGG - chr6_2:4927468-4927487 Msa0906340:CDS 30.0%
! ATTCTTTAGGTTCCAACCTT+TGG - chr6_2:4924552-4924571 Msa0906340:CDS 35.0%
AGTATCTACTTTCCAAAGGT+TGG + chr6_2:4924567-4924586 None:intergenic 35.0%
ACTCAGTATCTACTTTCCAA+AGG + chr6_2:4924571-4924590 None:intergenic 35.0%
TAGATACTGAGTGTCTTGAA+TGG - chr6_2:4924579-4924598 Msa0906340:CDS 35.0%
GTATTAAACCACCCTTCAAT+CGG - chr6_2:4924835-4924854 Msa0906340:intron 35.0%
AAAAATGGCCAACACAACAT+CGG + chr6_2:4924919-4924938 None:intergenic 35.0%
!! TAAATCTACAGTTTGTTGGC+TGG + chr6_2:4924948-4924967 None:intergenic 35.0%
TAATGAATGGGAGATTGGTA+TGG - chr6_2:4924972-4924991 Msa0906340:intron 35.0%
CGATACAAATGTGAAGAGAA+AGG - chr6_2:4924999-4925018 Msa0906340:intron 35.0%
AAATGTGAAGAGAAAGGAGT+TGG - chr6_2:4925005-4925024 Msa0906340:intron 35.0%
GAGATAAAGGAAAGAAGATG+AGG - chr6_2:4925055-4925074 Msa0906340:intron 35.0%
! ATTAGTCTGTATCGCATACA+TGG + chr6_2:4925445-4925464 None:intergenic 35.0%
GGGACTAAAACAAAACATCT+AGG - chr6_2:4925743-4925762 Msa0906340:intron 35.0%
!! CTCATTCAGGTTGTGATTTA+TGG + chr6_2:4925874-4925893 None:intergenic 35.0%
CATAAATCACAACCTGAATG+AGG - chr6_2:4925872-4925891 Msa0906340:intron 35.0%
! TTTAGGTCTGTCTTGATGAT+AGG - chr6_2:4925920-4925939 Msa0906340:intron 35.0%
! TTAGGTCTGTCTTGATGATA+GGG - chr6_2:4925921-4925940 Msa0906340:intron 35.0%
AATTTACCAATCAAGAGGGA+TGG + chr6_2:4925956-4925975 None:intergenic 35.0%
TCCCTCTTGATTGGTAAATT+TGG - chr6_2:4925956-4925975 Msa0906340:intron 35.0%
! TTAGAGAGGGACTGATATTT+TGG - chr6_2:4926064-4926083 Msa0906340:intron 35.0%
AATCTCTCTATCTCGAGTAT+TGG + chr6_2:4926437-4926456 None:intergenic 35.0%
!!! TAATGTGGTTTTTTAGCGGT+GGG + chr6_2:4926535-4926554 None:intergenic 35.0%
!!! TTAATGTGGTTTTTTAGCGG+TGG + chr6_2:4926536-4926555 None:intergenic 35.0%
AAATTGTTCACCTCCACTAT+CGG + chr6_2:4926571-4926590 None:intergenic 35.0%
TGTATCATGGATAACAAGGA+AGG + chr6_2:4926604-4926623 None:intergenic 35.0%
TGTGACACCTTAAAAACGAA+TGG - chr6_2:4926685-4926704 Msa0906340:intron 35.0%
!! TTCTGGCTTCAATTATTGTG+AGG - chr6_2:4926832-4926851 Msa0906340:CDS 35.0%
TCTTTGGCATAATGAGGATA+AGG - chr6_2:4926870-4926889 Msa0906340:CDS 35.0%
! TTTTCCATTCCACAAATCCA+AGG - chr6_2:4926984-4927003 Msa0906340:CDS 35.0%
TTTCCATTCCACAAATCCAA+GGG - chr6_2:4926985-4927004 Msa0906340:CDS 35.0%
AAGTATAGAGACAAAGGGAT+AGG + chr6_2:4927045-4927064 None:intergenic 35.0%
! AGACTGGCAAGTTTGATTTA+TGG + chr6_2:4927167-4927186 None:intergenic 35.0%
AGGTTATGTAAAAGCCTCTT+AGG + chr6_2:4927205-4927224 None:intergenic 35.0%
!! ATTGTACTCAGTGTTGACAA+AGG + chr6_2:4927225-4927244 None:intergenic 35.0%
AGAGACCCTAATTCTCTTAA+TGG - chr6_2:4927266-4927285 Msa0906340:CDS 35.0%
TCTATTGGAGTTAAACCATC+TGG + chr6_2:4927320-4927339 None:intergenic 35.0%
GATGGTTTAACTCCAATAGA+TGG - chr6_2:4927320-4927339 Msa0906340:CDS 35.0%
TTAACTCCAATAGATGGTGA+TGG - chr6_2:4927326-4927345 Msa0906340:CDS 35.0%
AAACTAAGCAAGTAACTGGA+GGG + chr6_2:4927463-4927482 None:intergenic 35.0%
TAAACTAAGCAAGTAACTGG+AGG + chr6_2:4927464-4927483 None:intergenic 35.0%
TTTCCTTCTCTTTACCCCAT+TGG - chr6_2:4924482-4924501 Msa0906340:CDS 40.0%
AATGAAGGTAAAGGGCCAAT+GGG + chr6_2:4924500-4924519 None:intergenic 40.0%
TAATGAAGGTAAAGGGCCAA+TGG + chr6_2:4924501-4924520 None:intergenic 40.0%
TCTTGAATGGCTTGAATCCA+AGG - chr6_2:4924592-4924611 Msa0906340:CDS 40.0%
TTCACATAAACAACGGATCC+CGG + chr6_2:4924620-4924639 None:intergenic 40.0%
! AGCAACTGTTGGAATTTGCT+TGG - chr6_2:4924669-4924688 Msa0906340:CDS 40.0%
! GCAACTGTTGGAATTTGCTT+GGG - chr6_2:4924670-4924689 Msa0906340:CDS 40.0%
! CAACTGTTGGAATTTGCTTG+GGG - chr6_2:4924671-4924690 Msa0906340:CDS 40.0%
GGCCTAATGATCCACAAAAA+TGG + chr6_2:4924716-4924735 None:intergenic 40.0%
ATTAGGCCTGATCTTGTCAT+TGG - chr6_2:4924728-4924747 Msa0906340:CDS 40.0%
! GCTCAGTGATTTTGTCATCT+GGG - chr6_2:4924753-4924772 Msa0906340:CDS 40.0%
AGAGGCCTATAATAGCAAGT+TGG - chr6_2:4924797-4924816 Msa0906340:intron 40.0%
!! GGACACCAACTTGCTATTAT+AGG + chr6_2:4924805-4924824 None:intergenic 40.0%
TCAAGAATCCTCCGATTGAA+GGG + chr6_2:4924849-4924868 None:intergenic 40.0%
GATTCTTGACTCATTGTGGA+TGG - chr6_2:4924860-4924879 Msa0906340:intron 40.0%
CTGATCAATGAAGTGATAGC+TGG - chr6_2:4925033-4925052 Msa0906340:intron 40.0%
GAAGTGATAGCTGGAGATAA+AGG - chr6_2:4925042-4925061 Msa0906340:intron 40.0%
AGGAAAGAAGATGAGGCAAA+AGG - chr6_2:4925062-4925081 Msa0906340:intron 40.0%
TTCATGTATGAACAACCACC+TGG + chr6_2:4925126-4925145 None:intergenic 40.0%
TGGTTGTTCATACATGAACC+TGG - chr6_2:4925128-4925147 Msa0906340:intron 40.0%
GAACCTGGACAAAGTGATTA+AGG - chr6_2:4925143-4925162 Msa0906340:intron 40.0%
GGTCCTTTCACAGTTACTAT+AGG - chr6_2:4925404-4925423 Msa0906340:intron 40.0%
TCGCATACATGGTTATGAGT+TGG + chr6_2:4925434-4925453 None:intergenic 40.0%
!!! CACTGGACCACTCTTTTTTT+TGG + chr6_2:4926096-4926115 None:intergenic 40.0%
CGTGAAGAACTAGAATTCTC+AGG - chr6_2:4926399-4926418 Msa0906340:intron 40.0%
ATTGCTCTCTTCTTCGTTGA+TGG + chr6_2:4926463-4926482 None:intergenic 40.0%
GAAGATTGCGATCATTCGTA+AGG + chr6_2:4926648-4926667 None:intergenic 40.0%
AGATAAAAGCCAATGTCCCT+TGG + chr6_2:4927004-4927023 None:intergenic 40.0%
AATGGAATCAATACGGCATG+TGG + chr6_2:4927122-4927141 None:intergenic 40.0%
ACATCACCATCACCATCTAT+TGG + chr6_2:4927335-4927354 None:intergenic 40.0%
ATGAAGGTAAAGGGCCAATG+GGG + chr6_2:4924499-4924518 None:intergenic 45.0%
TATGACACCAGAGCAACTGT+TGG - chr6_2:4924658-4924677 Msa0906340:CDS 45.0%
GCAAATTCCAACAGTTGCTC+TGG + chr6_2:4924668-4924687 None:intergenic 45.0%
! GTTGGAATTTGCTTGGGGTT+TGG - chr6_2:4924676-4924695 Msa0906340:CDS 45.0%
! GGCTCAGTGATTTTGTCATC+TGG - chr6_2:4924752-4924771 Msa0906340:CDS 45.0%
TTAAACCACCCTTCAATCGG+AGG - chr6_2:4924838-4924857 Msa0906340:intron 45.0%
GTCAAGAATCCTCCGATTGA+AGG + chr6_2:4924850-4924869 None:intergenic 45.0%
GGAGGATTCTTGACTCATTG+TGG - chr6_2:4924856-4924875 Msa0906340:intron 45.0%
! ACCACTGAAAGCATATGTGC+TGG - chr6_2:4924889-4924908 Msa0906340:intron 45.0%
TCCAGCACATATGCTTTCAG+TGG + chr6_2:4924893-4924912 None:intergenic 45.0%
! GTTGGCTGGTCAGCAAAAAA+TGG + chr6_2:4924934-4924953 None:intergenic 45.0%
TGCCATCTTCTTCAACTCCA+TGG + chr6_2:4925088-4925107 None:intergenic 45.0%
GGAGTTGAAGAAGATGGCAA+TGG - chr6_2:4925089-4925108 Msa0906340:intron 45.0%
CCTCCTTAATCACTTTGTCC+AGG + chr6_2:4925149-4925168 None:intergenic 45.0%
CCTGGACAAAGTGATTAAGG+AGG - chr6_2:4925146-4925165 Msa0906340:intron 45.0%
ACACATCCATCCCTCTTGAT+TGG - chr6_2:4925947-4925966 Msa0906340:intron 45.0%
TTGGAATGCCGTGCAAGTAT+TGG - chr6_2:4926267-4926286 Msa0906340:intron 45.0%
TGTCCCTTGGATTTGTGGAA+TGG + chr6_2:4926991-4927010 None:intergenic 45.0%
TCCACAAATCCAAGGGACAT+TGG - chr6_2:4926992-4927011 Msa0906340:CDS 45.0%
CAAACTTGCCAGTCTTGCAA+AGG - chr6_2:4927172-4927191 Msa0906340:intron 45.0%
GTGAAGAACCTTTGCAAGAC+TGG + chr6_2:4927183-4927202 None:intergenic 45.0%
GCAAAGGTTCTTCACCTAAG+AGG - chr6_2:4927188-4927207 Msa0906340:intron 45.0%
TGCTTCGAGACTATTCCAGA+TGG - chr6_2:4927302-4927321 Msa0906340:CDS 45.0%
CAAGAAGTTCGCGAAATGGT+TGG + chr6_2:4927406-4927425 None:intergenic 45.0%
CTAGCAAGAAGTTCGCGAAA+TGG + chr6_2:4927410-4927429 None:intergenic 45.0%
ATGGCTTGAATCCAAGGAGC+CGG - chr6_2:4924598-4924617 Msa0906340:CDS 50.0%
AGGCCTGATCTTGTCATTGG+TGG - chr6_2:4924731-4924750 Msa0906340:CDS 50.0%
GAGCCACCAATGACAAGATC+AGG + chr6_2:4924737-4924756 None:intergenic 50.0%
AGAATCCTCCGATTGAAGGG+TGG + chr6_2:4924846-4924865 None:intergenic 50.0%
GAAGATGAGGCAAAAGGCCA+TGG - chr6_2:4925068-4925087 Msa0906340:intron 50.0%
GGCCATGGAGTTGAAGAAGA+TGG - chr6_2:4925083-4925102 Msa0906340:intron 50.0%
GCAATGGAGAACACTAGACC+AGG - chr6_2:4925105-4925124 Msa0906340:intron 50.0%
ATGGAGAACACTAGACCAGG+TGG - chr6_2:4925108-4925127 Msa0906340:intron 50.0%
GGACGCACAACGCTTTAATG+TGG + chr6_2:4926550-4926569 None:intergenic 50.0%
GCCAATGTCCCTTGGATTTG+TGG + chr6_2:4926996-4927015 None:intergenic 50.0%
GAAGTTCGCGAAATGGTTGG+AGG + chr6_2:4927403-4927422 None:intergenic 50.0%
GGGCCAATGGGGTAAAGAGA+AGG + chr6_2:4924488-4924507 None:intergenic 55.0%
TGGCTTGAATCCAAGGAGCC+GGG - chr6_2:4924599-4924618 Msa0906340:CDS 55.0%
!! CTGGAGTGCCGATGTTGTGT+TGG - chr6_2:4924908-4924927 Msa0906340:intron 55.0%
! AAGCGTTGTGCGTCCGATAG+TGG - chr6_2:4926555-4926574 Msa0906340:intron 55.0%
GAGACAAAGGGATAGGCCAG+TGG + chr6_2:4927038-4927057 None:intergenic 55.0%
CTCCATGAGTCTTCCACTGC+TGG - chr6_2:4927431-4927450 Msa0906340:CDS 55.0%
GACCAGCAGTGGAAGACTCA+TGG + chr6_2:4927436-4927455 None:intergenic 55.0%
TGGAGGGATAAGACCAGCAG+TGG + chr6_2:4927447-4927466 None:intergenic 55.0%
AACAACGGATCCCGGCTCCT+TGG + chr6_2:4924612-4924631 None:intergenic 60.0%
! CGTTGTGCGTCCGATAGTGG+AGG - chr6_2:4926558-4926577 Msa0906340:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 4924479 4927520 4924479 ID=Msa0906340;Name=Msa0906340
chr6_2 mRNA 4924479 4927520 4924479 ID=Msa0906340-mRNA-1;Parent=Msa0906340;Name=Msa0906340-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|1|1|3|0|274
chr6_2 exon 4927242 4927520 4927242 ID=Msa0906340-mRNA-1:exon:1472;Parent=Msa0906340-mRNA-1
chr6_2 exon 4926832 4927050 4926832 ID=Msa0906340-mRNA-1:exon:1471;Parent=Msa0906340-mRNA-1
chr6_2 exon 4924479 4924805 4924479 ID=Msa0906340-mRNA-1:exon:1470;Parent=Msa0906340-mRNA-1
chr6_2 CDS 4927242 4927520 4927242 ID=Msa0906340-mRNA-1:cds;Parent=Msa0906340-mRNA-1
chr6_2 CDS 4926832 4927050 4926832 ID=Msa0906340-mRNA-1:cds;Parent=Msa0906340-mRNA-1
chr6_2 CDS 4924479 4924805 4924479 ID=Msa0906340-mRNA-1:cds;Parent=Msa0906340-mRNA-1
Gene Sequence

>Msa0906340

ATGTTTCCTTCTCTTTACCCCATTGGCCCTTTACCTTCATTATTAAACCAAACTCCACAAATTCATCAATTGGATTCTTTAGGTTCCAACCTTTGGAAAGTAGATACTGAGTGTCTTGAATGGCTTGAATCCAAGGAGCCGGGATCCGTTGTTTATGTGAATTTTGGCAGCATTACAGTTATGACACCAGAGCAACTGTTGGAATTTGCTTGGGGTTTGGCCAATTGCAATAAACCATTTTTGTGGATCATTAGGCCTGATCTTGTCATTGGTGGCTCACCAACAAACTGTAGATTTATTTGTAATGAATGGGAGATTGGTATGGAAATCGATACAAATGTGAAGAGAAAGGAGTTGGCGAAGCTGATCAATGAAGTGATAGCTGGAGATAAAGGAAAGAAGATGAGGCAAAAGGCCATGGAGTTGAAGAAGATGGCAATGGAGAACACTAGACCAGGTGGTTGTTCATACATGAACCTGGACAAAGTGATTAAGGAGGTTCTTCACCTAAGAGGCTTTTACATAACCTTTGTCAACACTGAGTACAATCACAAACACTTGCTCAAATCAAGAGACCCTAATTCTCTTAATGGTTTCACTGATTTTTGCTTCGAGACTATTCCAGATGGTTTAACTCCAATAGATGGTGATGGTGATGTTACTCAAGACATAAATTCTCTCTGTAAATCAATCAGAAATAACTTCCTCCAACCATTTCGCGAACTTCTTGCTAGACTCCATGAGTCTTCCACTGCTGGTCTTATCCCTCCAGTTACTTGCTTAGTTTATGACTGGAACATGTCCTTTACTATACAAGTTGCTTAA
Protein sequence

>Msa0906340

MFPSLYPIGPLPSLLNQTPQIHQLDSLGSNLWKVDTECLEWLESKEPGSVVYVNFGSITVMTPEQLLEFAWGLANCNKPFLWIIRPDLVIGGSPTNCRFICNEWEIGMEIDTNVKRKELAKLINEVIAGDKGKKMRQKAMELKKMAMENTRPGGCSYMNLDKVIKEVLHLRGFYITFVNTEYNHKHLLKSRDPNSLNGFTDFCFETIPDGLTPIDGDGDVTQDINSLCKSIRNNFLQPFRELLARLHESSTAGLIPPVTCLVYDWNMSFTIQVA*