AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0906320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0906320 MtrunA17_Chr6g0454231 47.486 358 91 7 3 274 29 375 8.56e-95 287
Msa0906320 MtrunA17_Chr6g0454211 52.584 329 77 8 1 274 121 425 2.84e-92 288
Msa0906320 MtrunA17_Chr6g0454211 73.913 92 23 1 2 93 539 629 8.13e-37 138
Msa0906320 MtrunA17_Chr6g0454211 70.667 75 22 0 94 168 693 767 1.02e-29 117
Msa0906320 MtrunA17_Chr6g0454321 68.664 217 20 2 94 262 404 620 3.22e-91 283
Msa0906320 MtrunA17_Chr6g0454321 93.548 93 6 0 1 93 248 340 1.05e-53 184
Msa0906320 MtrunA17_Chr6g0454321 66.667 111 34 1 164 274 28 135 1.62e-42 154
Msa0906320 MtrunA17_Chr6g0454301 41.071 392 109 11 1 274 1 388 2.23e-77 248
Msa0906320 MtrunA17_Chr6g0454301 88.172 93 11 0 1 93 501 593 1.42e-51 179
Msa0906320 MtrunA17_Chr6g0454301 81.333 75 14 0 94 168 657 731 7.92e-34 129
Msa0906320 MtrunA17_Chr6g0454221 96.774 93 3 0 1 93 1 93 5.87e-60 192
Msa0906320 MtrunA17_Chr6g0454221 68.421 95 29 1 91 185 154 247 3.17e-35 128
Msa0906320 MtrunA17_Chr6g0453951 50.216 231 51 6 1 168 298 527 8.68e-55 185
Msa0906320 MtrunA17_Chr6g0453951 67.568 111 36 0 164 274 75 185 8.04e-47 164
Msa0906320 MtrunA17_Chr8g0336331 90.323 93 9 0 1 93 247 339 8.50e-54 181
Msa0906320 MtrunA17_Chr8g0336331 63.063 111 37 2 164 274 28 134 1.35e-40 146
Msa0906320 MtrunA17_Chr8g0336331 85.333 75 11 0 94 168 403 477 1.40e-36 135
Msa0906320 MtrunA17_Chr6g0454281 72.072 111 31 0 164 274 28 138 4.24e-53 172
Msa0906320 MtrunA17_Chr6g0453981 89.130 92 9 1 1 92 121 211 7.86e-53 171
Msa0906320 MtrunA17_Chr6g0454341 92.308 91 7 0 3 93 250 340 9.58e-53 178
Msa0906320 MtrunA17_Chr6g0454341 65.766 111 35 1 164 274 28 135 2.50e-44 156
Msa0906320 MtrunA17_Chr6g0454341 86.076 79 11 0 90 168 400 478 1.87e-39 143
Msa0906320 MtrunA17_Chr3g0118751 44.828 203 76 3 3 169 244 446 6.35e-52 175
Msa0906320 MtrunA17_Chr3g0118751 48.649 111 52 2 164 274 24 129 5.77e-24 100
Msa0906320 MtrunA17_Chr6g0454291 77.885 104 23 0 171 274 32 135 6.28e-51 173
Msa0906320 MtrunA17_Chr6g0454291 77.174 92 20 1 2 93 249 339 2.08e-40 145
Msa0906320 MtrunA17_Chr6g0454291 74.684 79 20 0 90 168 399 477 6.32e-35 130
Msa0906320 MtrunA17_Chr6g0454251 70.270 111 33 0 164 274 25 135 6.40e-51 171
Msa0906320 MtrunA17_Chr6g0454251 75.000 92 22 1 2 93 249 339 2.41e-39 141
Msa0906320 MtrunA17_Chr6g0454141 48.485 231 55 9 1 168 251 480 8.79e-51 173
Msa0906320 MtrunA17_Chr6g0454141 67.568 111 36 0 164 274 28 138 3.80e-45 158
Msa0906320 MtrunA17_Chr3g0078841 87.097 93 12 0 1 93 248 340 4.31e-50 171
Msa0906320 MtrunA17_Chr3g0078841 69.369 111 31 1 164 274 28 135 5.19e-46 160
Msa0906320 MtrunA17_Chr3g0078841 79.747 79 16 0 90 168 400 478 2.45e-37 137
Msa0906320 MtrunA17_Chr6g0454401 75.000 112 27 1 164 274 28 139 8.20e-50 171
Msa0906320 MtrunA17_Chr6g0454401 86.022 93 12 1 1 93 252 343 4.46e-47 163
Msa0906320 MtrunA17_Chr6g0454401 77.215 79 18 0 90 168 403 481 1.09e-34 130
Msa0906320 MtrunA17_Chr5g0426401 42.489 233 68 5 2 170 83 313 1.06e-49 166
Msa0906320 MtrunA17_Chr6g0454351 71.171 111 32 0 164 274 30 140 4.43e-49 168
Msa0906320 MtrunA17_Chr6g0454351 76.000 75 18 0 94 168 391 465 3.84e-33 125
Msa0906320 MtrunA17_Chr6g0454351 64.516 93 15 2 1 93 253 327 7.30e-29 114
Msa0906320 MtrunA17_Chr5g0426431 42.241 232 68 5 1 168 249 478 5.60e-49 168
Msa0906320 MtrunA17_Chr5g0426431 54.464 112 45 3 164 274 30 136 2.00e-28 113
Msa0906320 MtrunA17_Chr3g0118721 39.149 235 78 3 3 172 60 294 2.22e-48 162
Msa0906320 MtrunA17_Chr6g0454201 45.415 229 61 5 3 168 254 481 7.79e-48 165
Msa0906320 MtrunA17_Chr6g0454201 72.115 104 29 0 171 274 36 139 2.57e-44 156
Msa0906320 MtrunA17_Chr6g0454331 68.142 113 34 1 164 274 25 137 1.12e-47 165
Msa0906320 MtrunA17_Chr6g0454331 76.087 92 21 1 2 93 251 341 6.69e-40 144
Msa0906320 MtrunA17_Chr6g0454331 80.000 75 15 0 94 168 405 479 2.24e-35 132
Msa0906320 MtrunA17_Chr6g0454361 75.962 104 25 0 171 274 36 139 1.18e-47 165
Msa0906320 MtrunA17_Chr6g0454361 78.261 92 19 1 2 93 253 343 9.74e-41 146
Msa0906320 MtrunA17_Chr6g0454361 76.000 75 18 0 94 168 407 481 6.79e-33 125
Msa0906320 MtrunA17_Chr6g0453941 84.946 93 13 1 1 93 174 265 3.38e-47 158
Msa0906320 MtrunA17_Chr5g0423981 70.370 108 32 0 164 271 28 135 6.77e-47 162
Msa0906320 MtrunA17_Chr5g0423981 79.570 93 18 1 1 93 216 307 1.25e-42 151
Msa0906320 MtrunA17_Chr5g0423981 68.354 79 25 0 90 168 367 445 1.03e-30 119
Msa0906320 MtrunA17_Chr6g0453961 69.369 111 34 0 164 274 37 147 1.34e-46 162
Msa0906320 MtrunA17_Chr6g0453961 79.570 93 18 1 1 93 261 352 3.69e-42 150
Msa0906320 MtrunA17_Chr6g0453961 67.089 79 26 0 90 168 412 490 2.33e-30 118
Msa0906320 MtrunA17_Chr3g0118711 39.224 232 76 3 3 169 251 482 3.03e-46 161
Msa0906320 MtrunA17_Chr3g0118711 43.243 111 58 2 164 274 31 136 2.62e-20 90.1
Msa0906320 MtrunA17_Chr3g0118771 38.793 232 77 3 3 169 259 490 3.89e-46 161
Msa0906320 MtrunA17_Chr3g0118771 47.748 111 53 2 164 274 39 144 2.46e-23 99.0
Msa0906320 MtrunA17_Chr6g0454181 67.568 111 36 0 164 274 28 138 4.27e-46 160
Msa0906320 MtrunA17_Chr6g0454181 78.495 93 19 1 1 93 251 342 5.92e-44 155
Msa0906320 MtrunA17_Chr6g0454181 70.886 79 23 0 90 168 402 480 3.31e-32 123
Msa0906320 MtrunA17_Chr7g0217881 71.845 103 29 0 172 274 36 138 1.35e-45 159
Msa0906320 MtrunA17_Chr7g0217881 82.796 93 15 1 1 93 233 324 1.03e-42 151
Msa0906320 MtrunA17_Chr7g0217881 75.641 78 19 0 91 168 385 462 8.19e-33 125
Msa0906320 MtrunA17_Chr6g0454191 70.536 112 32 1 164 274 28 139 1.35e-45 159
Msa0906320 MtrunA17_Chr6g0454191 80.645 93 17 1 1 93 252 343 3.43e-44 155
Msa0906320 MtrunA17_Chr6g0454191 72.152 79 22 0 90 168 403 481 5.75e-32 122
Msa0906320 MtrunA17_Chr6g0454121 82.796 93 15 1 1 93 250 341 3.34e-45 158
Msa0906320 MtrunA17_Chr6g0454121 63.462 104 37 1 171 274 35 137 6.05e-35 131
Msa0906320 MtrunA17_Chr6g0454121 67.089 79 26 0 90 168 401 479 6.09e-30 117
Msa0906320 MtrunA17_Chr6g0454151 71.154 104 30 0 171 274 35 138 4.35e-45 158
Msa0906320 MtrunA17_Chr6g0454151 78.495 93 19 1 1 93 249 340 1.65e-42 151
Msa0906320 MtrunA17_Chr6g0454151 72.000 75 21 0 94 168 404 478 7.53e-29 114
Msa0906320 MtrunA17_Chr6g0452771 62.712 118 44 0 157 274 21 138 4.63e-45 158
Msa0906320 MtrunA17_Chr6g0452771 76.344 93 21 1 1 93 251 342 3.24e-40 145
Msa0906320 MtrunA17_Chr6g0452771 77.333 75 17 0 94 168 406 480 1.88e-31 121
Msa0906320 MtrunA17_Chr6g0454261 68.468 111 35 0 164 274 28 138 2.25e-44 156
Msa0906320 MtrunA17_Chr6g0454261 78.495 93 19 1 1 93 251 342 2.03e-42 151
Msa0906320 MtrunA17_Chr6g0454261 76.000 75 18 0 94 168 406 480 6.08e-33 125
Msa0906320 MtrunA17_Chr6g0454131 80.645 93 17 1 1 93 250 341 3.73e-44 155
Msa0906320 MtrunA17_Chr6g0454131 64.423 104 36 1 171 274 35 137 2.25e-37 137
Msa0906320 MtrunA17_Chr6g0454131 65.823 79 27 0 90 168 401 479 1.17e-28 114
Msa0906320 MtrunA17_Chr3g0118671 36.864 236 84 3 3 173 244 479 3.47e-43 153
Msa0906320 MtrunA17_Chr3g0118671 47.748 111 53 2 164 274 24 129 4.10e-23 98.2
Msa0906320 MtrunA17_Chr8g0359821 73.786 103 26 1 1 103 249 350 4.34e-43 153
Msa0906320 MtrunA17_Chr8g0359821 67.568 111 34 2 164 274 28 136 5.05e-40 144
Msa0906320 MtrunA17_Chr8g0359821 72.000 75 21 0 94 168 404 478 1.12e-30 119
Msa0906320 MtrunA17_Chr6g0454171 44.749 219 65 7 1 168 97 310 5.84e-43 149
Msa0906320 MtrunA17_Chr8g0336271 63.063 111 37 2 164 274 28 134 4.98e-42 145
Msa0906320 MtrunA17_Chr3g0118701 36.207 232 83 3 3 169 253 484 1.07e-41 149
Msa0906320 MtrunA17_Chr3g0118701 45.763 118 55 3 157 274 30 138 2.84e-22 95.9
Msa0906320 MtrunA17_Chr6g0454271 67.961 103 32 1 1 103 58 159 3.48e-41 143
Msa0906320 MtrunA17_Chr6g0454271 70.667 75 22 0 94 168 213 287 3.12e-32 120
Msa0906320 MtrunA17_Chr4g0050341 36.522 230 79 3 2 164 258 487 2.45e-40 145
Msa0906320 MtrunA17_Chr4g0050341 44.144 111 59 2 164 274 37 144 1.22e-19 88.2
Msa0906320 MtrunA17_Chr5g0427561 81.579 76 14 0 93 168 10 85 4.81e-38 129
Msa0906320 MtrunA17_Chr3g0118691 35.865 237 83 5 3 172 253 487 4.60e-36 134
Msa0906320 MtrunA17_Chr3g0118691 44.068 118 57 3 157 274 30 138 2.12e-21 93.2
Msa0906320 MtrunA17_Chr3g0092641 63.736 91 32 1 1 91 249 338 4.34e-33 125
Msa0906320 MtrunA17_Chr3g0092641 52.679 112 47 3 164 274 30 136 7.68e-27 108
Msa0906320 MtrunA17_Chr3g0092641 48.000 75 37 2 95 168 405 478 3.09e-16 78.2
Msa0906320 MtrunA17_Chr6g0454111 70.370 81 23 1 1 81 104 183 1.06e-32 118
Msa0906320 MtrunA17_Chr6g0454371 72.000 75 21 0 94 168 97 171 8.78e-31 113
Msa0906320 MtrunA17_Chr6g0454371 84.848 33 5 0 61 93 1 33 3.53e-12 63.5
Msa0906320 MtrunA17_Chr8g0355011 66.667 78 26 0 91 168 285 362 2.62e-30 116
Msa0906320 MtrunA17_Chr8g0355011 75.000 48 12 0 46 93 177 224 6.10e-16 77.0
Msa0906320 MtrunA17_Chr5g0426411 51.786 112 48 3 164 274 30 136 5.32e-29 108
Msa0906320 MtrunA17_Chr2g0278711 55.789 95 42 0 1 95 244 338 7.17e-29 114
Msa0906320 MtrunA17_Chr2g0278711 52.252 111 45 2 164 274 29 131 1.26e-27 110
Msa0906320 MtrunA17_Chr3g0118661 50.485 103 46 2 3 104 251 349 2.18e-24 101
Msa0906320 MtrunA17_Chr3g0118661 43.220 118 58 3 157 274 28 136 4.91e-20 89.4
Msa0906320 MtrunA17_Chr3g0118661 46.667 75 40 0 95 169 407 481 2.47e-11 63.5
Msa0906320 MtrunA17_Chr5g0412111 53.409 88 40 1 2 89 236 322 3.00e-21 92.8
Msa0906320 MtrunA17_Chr7g0218841 28.761 226 84 7 3 164 225 437 9.64e-19 85.5
Msa0906320 MtrunA17_Chr7g0218831 27.876 226 86 7 3 164 224 436 1.01e-18 85.5
Msa0906320 MtrunA17_Chr5g0412131 50.562 89 42 1 3 89 242 330 1.36e-16 79.3
Msa0906320 MtrunA17_Chr3g0112771 43.333 90 38 2 5 91 231 310 6.95e-16 77.0
Msa0906320 MtrunA17_Chr6g0454241 62.963 54 19 1 127 179 1 54 1.99e-15 69.7
Msa0906320 MtrunA17_Chr5g0412101 46.667 90 46 1 2 89 242 331 3.58e-15 75.1
Msa0906320 MtrunA17_Chr7g0218791 27.434 226 85 10 3 164 231 441 6.40e-15 74.3
Msa0906320 MtrunA17_Chr7g0249961 24.464 233 112 6 1 170 31 262 8.96e-15 72.4
Msa0906320 MtrunA17_Chr3g0112761 52.632 57 27 0 35 91 251 307 1.39e-14 73.2
Msa0906320 MtrunA17_Chr7g0249981 24.609 256 124 8 1 192 238 488 2.56e-14 72.4
Msa0906320 MtrunA17_Chr7g0218821 41.667 84 39 1 3 86 235 308 2.76e-14 72.4
Msa0906320 MtrunA17_Chr8g0336261 73.171 41 11 0 94 134 97 137 4.46e-14 67.8
Msa0906320 MtrunA17_Chr8g0336261 87.879 33 4 0 61 93 1 33 1.07e-13 66.6
Msa0906320 MtrunA17_Chr5g0393591 25.405 185 86 2 35 167 251 435 6.34e-14 71.2
Msa0906320 MtrunA17_Chr1g0207981 40.230 87 45 3 1 85 242 323 3.45e-13 69.3
Msa0906320 MtrunA17_Chr7g0218811 42.857 84 38 1 3 86 234 307 6.08e-13 68.2
Msa0906320 MtrunA17_Chr3g0118731 46.753 77 36 2 198 274 28 99 1.10e-12 64.7
Msa0906320 MtrunA17_Chr4g0053501 35.714 84 48 2 5 86 232 311 1.62e-12 67.0
Msa0906320 MtrunA17_Chr7g0250001 38.636 88 50 3 1 86 219 304 2.80e-12 66.2
Msa0906320 MtrunA17_Chr4g0053321 35.714 84 48 2 5 86 247 326 3.83e-12 66.2
Msa0906320 MtrunA17_Chr8g0365811 40.244 82 44 2 5 85 723 800 5.87e-12 65.9
Msa0906320 MtrunA17_Chr6g0464881 38.554 83 50 1 4 85 228 310 8.29e-12 65.1
Msa0906320 MtrunA17_Chr4g0044511 54.902 51 23 0 35 85 294 344 9.03e-12 65.1
Msa0906320 MtrunA17_Chr5g0401721 37.931 87 47 2 5 88 240 322 1.35e-11 64.3
Msa0906320 MtrunA17_Chr8g0336691 39.286 84 38 2 3 85 1145 1216 5.19e-11 63.2
Msa0906320 MtrunA17_Chr5g0414331 39.535 86 50 2 1 85 224 308 5.29e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0906320 AT1G22370.1 38.197 233 79 5 1 168 74 306 6.68e-40 141
Msa0906320 AT1G22400.1 35.193 233 86 4 1 168 250 482 1.10e-39 144
Msa0906320 AT1G22400.1 51.351 111 49 2 164 274 31 136 8.65e-29 114
Msa0906320 AT1G22370.2 38.197 233 79 5 1 168 244 476 3.07e-38 140
Msa0906320 AT1G22370.2 49.550 111 51 2 164 274 31 136 8.84e-28 111
Msa0906320 AT1G22360.1 36.052 233 84 4 1 168 246 478 1.44e-37 138
Msa0906320 AT1G22360.1 48.649 111 52 2 164 274 28 133 8.82e-27 108
Msa0906320 AT1G78270.1 32.906 234 91 4 1 168 248 481 2.73e-36 135
Msa0906320 AT1G78270.1 50.450 111 50 2 164 274 31 136 1.11e-27 111
Msa0906320 AT1G22380.1 35.745 235 82 6 1 168 249 481 4.13e-35 132
Msa0906320 AT1G22380.1 50.450 111 50 3 164 274 31 136 9.79e-26 105
Msa0906320 AT1G22360.2 34.335 233 76 5 1 168 246 466 1.20e-30 119
Msa0906320 AT1G22360.2 48.649 111 52 2 164 274 28 133 1.02e-26 108
Msa0906320 AT1G22340.1 48.649 111 52 2 164 274 31 136 9.03e-28 111
Msa0906320 AT1G22340.1 51.087 92 44 1 1 91 249 340 6.19e-25 103
Msa0906320 AT1G22340.1 46.753 77 40 1 93 168 406 482 1.41e-16 79.7
Msa0906320 AT3G46720.1 27.064 218 91 3 5 164 230 437 1.80e-21 93.6
Msa0906320 AT1G05680.1 27.350 234 99 7 4 170 222 451 1.27e-18 85.5
Msa0906320 AT5G59580.1 44.828 87 38 1 5 91 230 306 1.69e-17 82.0
Msa0906320 AT3G46650.1 40.909 88 42 1 4 91 214 291 2.75e-17 81.6
Msa0906320 AT1G05675.1 27.083 192 77 4 36 164 258 449 5.39e-17 80.9
Msa0906320 AT2G31750.1 25.439 228 104 6 8 169 229 456 7.01e-17 80.5
Msa0906320 AT2G31750.2 25.439 228 104 6 8 169 229 456 7.63e-17 80.5
Msa0906320 AT2G23250.1 28.261 230 92 6 5 167 212 435 1.05e-16 79.7
Msa0906320 AT5G59590.1 40.909 88 42 1 5 92 232 309 1.14e-16 79.7
Msa0906320 AT3G46700.1 42.045 88 40 2 5 91 226 303 1.80e-16 79.3
Msa0906320 AT3G46690.1 41.379 87 42 2 5 91 231 308 1.17e-15 76.6
Msa0906320 AT2G15490.3 28.511 235 92 6 6 167 246 477 3.01e-15 75.9
Msa0906320 AT3G46680.1 41.379 87 41 1 5 91 232 308 6.00e-15 74.7
Msa0906320 AT2G15490.1 28.151 238 92 6 6 167 246 480 7.85e-15 74.3
Msa0906320 AT2G15480.1 28.085 235 93 6 6 167 249 480 8.38e-15 74.3
Msa0906320 AT5G38010.1 36.957 92 49 2 5 96 236 318 2.92e-14 72.8
Msa0906320 AT5G38040.1 35.227 88 48 1 5 92 232 310 9.39e-14 71.2
Msa0906320 AT5G05870.1 40.230 87 44 1 5 91 235 313 1.35e-13 70.9
Msa0906320 AT5G05900.1 42.424 66 38 0 28 93 250 315 1.74e-13 70.5
Msa0906320 AT2G15480.2 27.572 243 90 7 8 167 251 490 1.74e-13 70.5
Msa0906320 AT5G37950.2 35.870 92 50 2 5 96 202 284 3.97e-13 68.9
Msa0906320 AT5G37950.1 35.870 92 50 2 5 96 208 290 4.33e-13 68.9
Msa0906320 AT3G46660.1 37.500 88 45 1 5 92 238 315 7.19e-13 68.6
Msa0906320 AT3G02100.1 27.477 222 91 8 3 164 245 456 1.27e-12 67.8
Msa0906320 AT2G28080.1 24.576 236 101 7 5 173 252 477 1.42e-12 67.8
Msa0906320 AT3G11340.1 47.368 57 30 0 35 91 247 303 1.86e-12 67.4
Msa0906320 AT2G26480.1 37.079 89 44 2 5 91 225 303 2.34e-12 67.0
Msa0906320 AT3G55700.1 38.636 88 41 3 5 91 234 309 4.13e-12 66.2
Msa0906320 AT4G01070.1 40.964 83 38 1 3 85 234 305 5.60e-12 65.9
Msa0906320 AT5G05880.1 38.356 73 45 0 19 91 235 307 6.35e-12 65.9
Msa0906320 AT4G01070.2 40.964 83 38 1 3 85 234 305 8.41e-12 65.1
Msa0906320 AT5G05860.1 43.548 62 35 0 31 92 246 307 2.27e-11 63.9
Msa0906320 AT4G15500.1 36.585 82 47 1 7 88 240 316 2.60e-11 63.9
Msa0906320 AT3G46670.1 35.227 88 47 1 5 92 231 308 2.74e-11 63.9
Msa0906320 AT4G34135.2 49.020 51 26 0 35 85 276 326 5.02e-11 62.8
Msa0906320 AT4G34131.1 38.554 83 48 2 8 90 251 330 8.08e-11 62.4
Msa0906320 AT4G34135.1 49.020 51 26 0 35 85 276 326 8.71e-11 62.4

Find 76 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAACCATTAAGAGAATT+AGG 0.152420 6_2:+4910912 None:intergenic
AGAGACCCTAATTCTCTTAA+TGG 0.232417 6_2:-4910918 Msa0906320:CDS
ATTCATCAATTGGATTCTTT+AGG 0.307043 6_2:-4913645 Msa0906320:CDS
TCCGTTGTTTATGTGAATTT+TGG 0.307503 6_2:-4913561 Msa0906320:CDS
CAAATAAATCTACAGTTTGT+TGG 0.321938 6_2:+4913235 None:intergenic
ATTCTTTAGGTTCCAACCTT+TGG 0.323441 6_2:-4913632 Msa0906320:CDS
ATTGATGAATTTGTGGAGTT+TGG 0.329616 6_2:+4913658 None:intergenic
AGGTTATGTAAAAGCCTCTT+AGG 0.341194 6_2:+4910982 None:intergenic
AACTCCACAAATTCATCAAT+TGG 0.344444 6_2:-4913655 Msa0906320:CDS
ATTTGTAATGAATGGGAGAT+TGG 0.359619 6_2:-4913217 Msa0906320:CDS
GAACCTGGACAAAGTGATTA+AGG 0.362862 6_2:-4913041 Msa0906320:CDS
GTTGGAATTTGCTTGGGGTT+TGG 0.365245 6_2:-4913508 Msa0906320:CDS
TCATAAACTAAGCAAGTAAC+TGG 0.367424 6_2:+4910720 None:intergenic
GCAACTGTTGGAATTTGCTT+GGG 0.371369 6_2:-4913514 Msa0906320:CDS
GTAGATTTATTTGTAATGAA+TGG 0.382641 6_2:-4913225 Msa0906320:CDS
TTTCCTTCTCTTTACCCCAT+TGG 0.392683 6_2:-4913702 Msa0906320:CDS
TAGATTTATTTGTAATGAAT+GGG 0.407079 6_2:-4913224 Msa0906320:CDS
AGCAACTGTTGGAATTTGCT+TGG 0.413433 6_2:-4913515 Msa0906320:CDS
ACATCACCATCACCATCTAT+TGG 0.415465 6_2:+4910852 None:intergenic
TGAAACCATTAAGAGAATTA+GGG 0.419442 6_2:+4910913 None:intergenic
GAAGTGATAGCTGGAGATAA+AGG 0.430452 6_2:-4913142 Msa0906320:CDS
ATTAGGCCTGATCTTGTCAT+TGG 0.431441 6_2:-4913456 Msa0906320:CDS
GAATCCAATTGATGAATTTG+TGG 0.435101 6_2:+4913651 None:intergenic
GGAGTTTGGTTTAATAATGA+AGG 0.439181 6_2:+4913672 None:intergenic
GGTTTAATAATGAAGGTAAA+GGG 0.442151 6_2:+4913679 None:intergenic
GATGGTTTAACTCCAATAGA+TGG 0.442286 6_2:-4910864 Msa0906320:CDS
AATGAAGGTAAAGGGCCAAT+GGG 0.442908 6_2:+4913687 None:intergenic
CTCCATGAGTCTTCCACTGC+TGG 0.449582 6_2:-4910753 Msa0906320:CDS
GCAAAGGTTCTTCACCTAAG+AGG 0.455739 6_2:-4910996 Msa0906320:intron
TCTATTGGAGTTAAACCATC+TGG 0.456927 6_2:+4910867 None:intergenic
TGCCATCTTCTTCAACTCCA+TGG 0.457949 6_2:+4913099 None:intergenic
AGGCCTGATCTTGTCATTGG+TGG 0.464524 6_2:-4913453 Msa0906320:CDS
TGGTTTAATAATGAAGGTAA+AGG 0.468725 6_2:+4913678 None:intergenic
TTAAGCAACTTGTATAGTAA+AGG 0.469755 6_2:+4910686 None:intergenic
TTACTTGCTTAGTTTATGAC+TGG 0.469984 6_2:-4910716 Msa0906320:CDS
AGTATCTACTTTCCAAAGGT+TGG 0.470062 6_2:+4913620 None:intergenic
GCAAATTCCAACAGTTGCTC+TGG 0.484462 6_2:+4913519 None:intergenic
AACAACGGATCCCGGCTCCT+TGG 0.486045 6_2:+4913575 None:intergenic
GAGCCACCAATGACAAGATC+AGG 0.496376 6_2:+4913450 None:intergenic
CTAGCAAGAAGTTCGCGAAA+TGG 0.501554 6_2:+4910777 None:intergenic
AGGAAAGAAGATGAGGCAAA+AGG 0.504752 6_2:-4913122 Msa0906320:CDS
CTGATCAATGAAGTGATAGC+TGG 0.507213 6_2:-4913151 Msa0906320:CDS
CAAGAAGTTCGCGAAATGGT+TGG 0.507665 6_2:+4910781 None:intergenic
TTCACATAAACAACGGATCC+CGG 0.510656 6_2:+4913567 None:intergenic
TCTTGAATGGCTTGAATCCA+AGG 0.512622 6_2:-4913592 Msa0906320:CDS
TAATGAAGGTAAAGGGCCAA+TGG 0.517365 6_2:+4913686 None:intergenic
CCTCCTTAATCACTTTGTCC+AGG 0.523405 6_2:+4913038 None:intergenic
ATGGCTTGAATCCAAGGAGC+CGG 0.525604 6_2:-4913586 Msa0906320:CDS
TAATGAATGGGAGATTGGTA+TGG 0.527344 6_2:-4913212 Msa0906320:CDS
GACCAGCAGTGGAAGACTCA+TGG 0.537771 6_2:+4910751 None:intergenic
CGATACAAATGTGAAGAGAA+AGG 0.538783 6_2:-4913185 Msa0906320:CDS
GGCCATGGAGTTGAAGAAGA+TGG 0.539500 6_2:-4913101 Msa0906320:CDS
GAAGATGAGGCAAAAGGCCA+TGG 0.548548 6_2:-4913116 Msa0906320:CDS
TGGCTTGAATCCAAGGAGCC+GGG 0.553822 6_2:-4913585 Msa0906320:CDS
AAATGTGAAGAGAAAGGAGT+TGG 0.554578 6_2:-4913179 Msa0906320:CDS
CAACTGTTGGAATTTGCTTG+GGG 0.557924 6_2:-4913513 Msa0906320:CDS
TAGATACTGAGTGTCTTGAA+TGG 0.573247 6_2:-4913605 Msa0906320:CDS
TGCTTCGAGACTATTCCAGA+TGG 0.574422 6_2:-4910882 Msa0906320:CDS
GAAGTTCGCGAAATGGTTGG+AGG 0.595139 6_2:+4910784 None:intergenic
TGGAGGGATAAGACCAGCAG+TGG 0.600705 6_2:+4910740 None:intergenic
GGGCCAATGGGGTAAAGAGA+AGG 0.608383 6_2:+4913699 None:intergenic
GGAGTTGAAGAAGATGGCAA+TGG 0.609106 6_2:-4913095 Msa0906320:CDS
TGGTTGTTCATACATGAACC+TGG 0.610957 6_2:-4913056 Msa0906320:CDS
GCCAAAATTCACATAAACAA+CGG 0.615682 6_2:+4913560 None:intergenic
TATGACACCAGAGCAACTGT+TGG 0.617761 6_2:-4913526 Msa0906320:CDS
GAGATAAAGGAAAGAAGATG+AGG 0.620070 6_2:-4913129 Msa0906320:CDS
TAAACTAAGCAAGTAACTGG+AGG 0.624984 6_2:+4910723 None:intergenic
AAACTAAGCAAGTAACTGGA+GGG 0.625013 6_2:+4910724 None:intergenic
ACTCAGTATCTACTTTCCAA+AGG 0.626825 6_2:+4913616 None:intergenic
GCAATGGAGAACACTAGACC+AGG 0.653200 6_2:-4913079 Msa0906320:CDS
TTCATGTATGAACAACCACC+TGG 0.656051 6_2:+4913061 None:intergenic
TTAACTCCAATAGATGGTGA+TGG 0.675398 6_2:-4910858 Msa0906320:CDS
ATGAAGGTAAAGGGCCAATG+GGG 0.685143 6_2:+4913688 None:intergenic
ATTGTACTCAGTGTTGACAA+AGG 0.709081 6_2:+4910962 None:intergenic
ATGGAGAACACTAGACCAGG+TGG 0.714990 6_2:-4913076 Msa0906320:CDS
CCTGGACAAAGTGATTAAGG+AGG 0.733769 6_2:-4913038 Msa0906320:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTAAAACATATTTTTATA+GGG + chr6_2:4911749-4911768 None:intergenic 10.0%
!!! AAACTAAAACATATTTTTAT+AGG + chr6_2:4911750-4911769 None:intergenic 10.0%
!!! AATATCTAAATTTTTGTTTT+TGG - chr6_2:4911781-4911800 Msa0906320:intron 10.0%
!!! TAAATATGAATAGATTTTAT+AGG - chr6_2:4911929-4911948 Msa0906320:intron 10.0%
!!! AAATATGAATAGATTTTATA+GGG - chr6_2:4911930-4911949 Msa0906320:intron 10.0%
!!! AAATATATAATCTTTTGTTT+TGG + chr6_2:4911977-4911996 None:intergenic 10.0%
!!! AAGATATGTTTATTTTAAAA+TGG + chr6_2:4913129-4913148 None:intergenic 10.0%
!! TAGATTTATTTGTAATGAAT+GGG - chr6_2:4911167-4911186 Msa0906320:intron 15.0%
!! TTGAATATTAAAATAGTACA+TGG + chr6_2:4911507-4911526 None:intergenic 15.0%
!!! TACTATTTTAATATTCAACT+TGG - chr6_2:4911509-4911528 Msa0906320:intron 15.0%
!!! ACTATTTTAATATTCAACTT+GGG - chr6_2:4911510-4911529 Msa0906320:intron 15.0%
!! CAAAAATTTAGATATTTAGA+AGG + chr6_2:4911777-4911796 None:intergenic 15.0%
!! ATACCTTATATACATATTAA+AGG - chr6_2:4912019-4912038 Msa0906320:intron 15.0%
!! CATAAAGACTAAAAAATTAA+AGG - chr6_2:4912051-4912070 Msa0906320:intron 15.0%
!! GAAAATAGAGAAAATAAAAA+AGG + chr6_2:4913176-4913195 None:intergenic 15.0%
!! GTAGATTTATTTGTAATGAA+TGG - chr6_2:4911166-4911185 Msa0906320:intron 20.0%
!!! ATTTTACTACTTTATTTACC+TGG - chr6_2:4911426-4911445 Msa0906320:intron 20.0%
!!! AAGCTTCAAATATTTTTCAT+AGG - chr6_2:4911547-4911566 Msa0906320:intron 20.0%
!!! AGCTTCAAATATTTTTCATA+GGG - chr6_2:4911548-4911567 Msa0906320:intron 20.0%
!!! ATTAATTGAAGCTTTGAATA+AGG - chr6_2:4911590-4911609 Msa0906320:intron 20.0%
!! TTAAGATTCTAATATGCAAA+TGG - chr6_2:4911687-4911706 Msa0906320:intron 20.0%
!!! CAAATTAATATCAAGCATTT+TGG - chr6_2:4911716-4911735 Msa0906320:intron 20.0%
!! CAAATATTCTACATATTACA+AGG + chr6_2:4911859-4911878 None:intergenic 20.0%
!! AGGACTATAATGAATATTAT+CGG - chr6_2:4911898-4911917 Msa0906320:intron 20.0%
!! AGTCCTTTAATATGTATATA+AGG + chr6_2:4912025-4912044 None:intergenic 20.0%
!! TATACAAGTTAAGAGAATTT+AGG - chr6_2:4912110-4912129 Msa0906320:intron 20.0%
!!! ATATGTCAAAATTTTAGAGA+GGG - chr6_2:4912258-4912277 Msa0906320:intron 20.0%
!! TAGTAAACTGAAATTTATGA+GGG - chr6_2:4912404-4912423 Msa0906320:intron 20.0%
!! TGATAATATCTTCTATTGAA+CGG - chr6_2:4912451-4912470 Msa0906320:intron 20.0%
!!! AGATATAGTTTAAGATTTGT+TGG - chr6_2:4912499-4912518 Msa0906320:intron 20.0%
!!! ATTTTGACAATAAAGAAACT+TGG + chr6_2:4912540-4912559 None:intergenic 20.0%
!!! AAAAACAGAAAATATTTTCG+TGG + chr6_2:4912567-4912586 None:intergenic 20.0%
!!! ATACAACAAAACCATTTTTT+TGG - chr6_2:4912826-4912845 Msa0906320:intron 20.0%
!! GAATAATTCAAATCAATTTC+TGG - chr6_2:4913022-4913041 Msa0906320:intron 20.0%
! GGTTTAATAATGAAGGTAAA+GGG + chr6_2:4910715-4910734 None:intergenic 25.0%
! TGGTTTAATAATGAAGGTAA+AGG + chr6_2:4910716-4910735 None:intergenic 25.0%
! ATTCATCAATTGGATTCTTT+AGG - chr6_2:4910746-4910765 Msa0906320:CDS 25.0%
! CAAAAATGGTTTATTGCAAT+TGG + chr6_2:4910909-4910928 None:intergenic 25.0%
!!! ATTGCAATAAACCATTTTTG+TGG - chr6_2:4910909-4910928 Msa0906320:CDS 25.0%
! ACAAATGAAATTTCAGATAG+AGG - chr6_2:4910986-4911005 Msa0906320:CDS 25.0%
! CAAATAAATCTACAGTTTGT+TGG + chr6_2:4911159-4911178 None:intergenic 25.0%
! AAAAATTAGAAACATACACC+AGG + chr6_2:4911447-4911466 None:intergenic 25.0%
! TTCAACTTGGGATTAATATT+AGG - chr6_2:4911522-4911541 Msa0906320:intron 25.0%
!! CAATATCAATCAATTTTGCA+TGG + chr6_2:4911828-4911847 None:intergenic 25.0%
! CATGCAAAATTGATTGATAT+TGG - chr6_2:4911826-4911845 Msa0906320:intron 25.0%
!!! CATTATAGTCCTTATTTTGA+GGG + chr6_2:4911890-4911909 None:intergenic 25.0%
!!! TCATTATAGTCCTTATTTTG+AGG + chr6_2:4911891-4911910 None:intergenic 25.0%
! GGACTATAATGAATATTATC+GGG - chr6_2:4911899-4911918 Msa0906320:intron 25.0%
!! TGTATATAAGGTATCAACTA+AGG + chr6_2:4912013-4912032 None:intergenic 25.0%
! AAAACATTTGTCTTTCAACA+AGG + chr6_2:4912226-4912245 None:intergenic 25.0%
!!! CATATGTCAAAATTTTAGAG+AGG - chr6_2:4912257-4912276 Msa0906320:intron 25.0%
! GTAGTAAACTGAAATTTATG+AGG - chr6_2:4912403-4912422 Msa0906320:intron 25.0%
!! TTTTTGCTTGTTCTTTTGTT+TGG - chr6_2:4912582-4912601 Msa0906320:intron 25.0%
!!! AAAATGGTTTTGTTGTATCA+TGG + chr6_2:4912824-4912843 None:intergenic 25.0%
!!! ACTCTTTTCTTTTTCACTAA+GGG - chr6_2:4912942-4912961 Msa0906320:intron 25.0%
! TCACAATTTATGTTTCGAAT+CGG + chr6_2:4913004-4913023 None:intergenic 25.0%
! GTTTCAAAGTCAATAATCTT+TGG - chr6_2:4913061-4913080 Msa0906320:CDS 25.0%
! AAGGATCAAATTGTGTTAAT+TGG - chr6_2:4913096-4913115 Msa0906320:CDS 25.0%
! TATCTCAATTATTAAACCAC+TGG - chr6_2:4913226-4913245 Msa0906320:CDS 25.0%
! ATATGAAGTATAGAGACAAA+GGG + chr6_2:4913257-4913276 None:intergenic 25.0%
! AATTGGAAATGGAATCAATA+CGG + chr6_2:4913336-4913355 None:intergenic 25.0%
! ATATTTCCTTGAATTGGAAA+TGG + chr6_2:4913347-4913366 None:intergenic 25.0%
! TGAAACCATTAAGAGAATTA+GGG + chr6_2:4913481-4913500 None:intergenic 25.0%
! TTAAGCAACTTGTATAGTAA+AGG + chr6_2:4913708-4913727 None:intergenic 25.0%
! GGAGTTTGGTTTAATAATGA+AGG + chr6_2:4910722-4910741 None:intergenic 30.0%
ATTGATGAATTTGTGGAGTT+TGG + chr6_2:4910736-4910755 None:intergenic 30.0%
AACTCCACAAATTCATCAAT+TGG - chr6_2:4910736-4910755 Msa0906320:CDS 30.0%
GAATCCAATTGATGAATTTG+TGG + chr6_2:4910743-4910762 None:intergenic 30.0%
! TCCGTTGTTTATGTGAATTT+TGG - chr6_2:4910830-4910849 Msa0906320:CDS 30.0%
GCCAAAATTCACATAAACAA+CGG + chr6_2:4910834-4910853 None:intergenic 30.0%
!! AACCATTTTTGTGGATCATT+AGG - chr6_2:4910918-4910937 Msa0906320:CDS 30.0%
TGGTTTAATACTTTCTCTTG+TGG + chr6_2:4911033-4911052 None:intergenic 30.0%
ATTTGTAATGAATGGGAGAT+TGG - chr6_2:4911174-4911193 Msa0906320:intron 30.0%
TAACCTATAGTAACTGTGAA+AGG + chr6_2:4911617-4911636 None:intergenic 30.0%
!! GATTTTAGTCCCTCAAAATA+AGG - chr6_2:4911878-4911897 Msa0906320:intron 30.0%
!! TCATTCAGGTTGTGATTTAT+GGG + chr6_2:4912080-4912099 None:intergenic 30.0%
! TATATGTTTTCACCTCATTC+AGG + chr6_2:4912094-4912113 None:intergenic 30.0%
TCCAAATTTACCAATCAAGA+GGG + chr6_2:4912167-4912186 None:intergenic 30.0%
ATCCAAATTTACCAATCAAG+AGG + chr6_2:4912168-4912187 None:intergenic 30.0%
! ATTTTATGCAACTGTGACTT+TGG - chr6_2:4912186-4912205 Msa0906320:intron 30.0%
GTGATATCCAAAAAAAAGAG+TGG - chr6_2:4912293-4912312 Msa0906320:intron 30.0%
GCAAATTGATTAAACAACAC+TGG + chr6_2:4912320-4912339 None:intergenic 30.0%
TTCTGTACAACTAGAATCTT+TGG - chr6_2:4912350-4912369 Msa0906320:intron 30.0%
AATATCTTCTATTGAACGGT+TGG - chr6_2:4912455-4912474 Msa0906320:intron 30.0%
ATATCTTACCAATACTTGCA+CGG + chr6_2:4912485-4912504 None:intergenic 30.0%
!! AGCAATCACAAGTTCTAAAA+TGG - chr6_2:4912684-4912703 Msa0906320:intron 30.0%
!!! GCTTTAATGTGGTTTTTTAG+CGG + chr6_2:4912746-4912765 None:intergenic 30.0%
TTGTTGTATCATGGATAACA+AGG + chr6_2:4912815-4912834 None:intergenic 30.0%
TCGTAAGGAAACCAAAAAAA+TGG + chr6_2:4912840-4912859 None:intergenic 30.0%
!! TGTAACACCATTCGTTTTTA+AGG + chr6_2:4912902-4912921 None:intergenic 30.0%
! GGTGTTACAAATACTGTTAT+AGG - chr6_2:4912913-4912932 Msa0906320:intron 30.0%
ACAAATACTGTTATAGGACT+TGG - chr6_2:4912919-4912938 Msa0906320:intron 30.0%
!! GACTCTTTTCTTTTTCACTA+AGG - chr6_2:4912941-4912960 Msa0906320:intron 30.0%
CAATAATCTTTGGCATAATG+AGG - chr6_2:4913071-4913090 Msa0906320:CDS 30.0%
GATATGAAGTATAGAGACAA+AGG + chr6_2:4913258-4913277 None:intergenic 30.0%
TTGATTCCATTTCCAATTCA+AGG - chr6_2:4913338-4913357 Msa0906320:intron 30.0%
GGATTGATATTTCCTTGAAT+TGG + chr6_2:4913353-4913372 None:intergenic 30.0%
GTGAAACCATTAAGAGAATT+AGG + chr6_2:4913482-4913501 None:intergenic 30.0%
TCATAAACTAAGCAAGTAAC+TGG + chr6_2:4913674-4913693 None:intergenic 30.0%
TTACTTGCTTAGTTTATGAC+TGG - chr6_2:4913675-4913694 Msa0906320:CDS 30.0%
! ATTCTTTAGGTTCCAACCTT+TGG - chr6_2:4910759-4910778 Msa0906320:CDS 35.0%
AGTATCTACTTTCCAAAGGT+TGG + chr6_2:4910774-4910793 None:intergenic 35.0%
ACTCAGTATCTACTTTCCAA+AGG + chr6_2:4910778-4910797 None:intergenic 35.0%
TAGATACTGAGTGTCTTGAA+TGG - chr6_2:4910786-4910805 Msa0906320:CDS 35.0%
GTATTAAACCACCCTTCAAT+CGG - chr6_2:4911042-4911061 Msa0906320:intron 35.0%
AAAAATGGCCAACACAACAT+CGG + chr6_2:4911126-4911145 None:intergenic 35.0%
!! TAAATCTACAGTTTGTTGGC+TGG + chr6_2:4911155-4911174 None:intergenic 35.0%
TAATGAATGGGAGATTGGTA+TGG - chr6_2:4911179-4911198 Msa0906320:intron 35.0%
CGATACAAATGTGAAGAGAA+AGG - chr6_2:4911206-4911225 Msa0906320:intron 35.0%
AAATGTGAAGAGAAAGGAGT+TGG - chr6_2:4911212-4911231 Msa0906320:intron 35.0%
GAGATAAAGGAAAGAAGATG+AGG - chr6_2:4911262-4911281 Msa0906320:intron 35.0%
! ATTAGTCTGTATCGCATACA+TGG + chr6_2:4911652-4911671 None:intergenic 35.0%
GGGACTAAAACAAAACATCT+AGG - chr6_2:4911950-4911969 Msa0906320:intron 35.0%
!! CTCATTCAGGTTGTGATTTA+TGG + chr6_2:4912081-4912100 None:intergenic 35.0%
CATAAATCACAACCTGAATG+AGG - chr6_2:4912079-4912098 Msa0906320:intron 35.0%
! TTTAGGTCTGTCTTGATGAT+AGG - chr6_2:4912127-4912146 Msa0906320:intron 35.0%
! TTAGGTCTGTCTTGATGATA+GGG - chr6_2:4912128-4912147 Msa0906320:intron 35.0%
AATTTACCAATCAAGAGGGA+TGG + chr6_2:4912163-4912182 None:intergenic 35.0%
TCCCTCTTGATTGGTAAATT+TGG - chr6_2:4912163-4912182 Msa0906320:intron 35.0%
! TTAGAGAGGGACTGATATTT+TGG - chr6_2:4912271-4912290 Msa0906320:intron 35.0%
AATCTCTCTATCTCGAGTAT+TGG + chr6_2:4912644-4912663 None:intergenic 35.0%
!!! TAATGTGGTTTTTTAGCGGT+GGG + chr6_2:4912742-4912761 None:intergenic 35.0%
!!! TTAATGTGGTTTTTTAGCGG+TGG + chr6_2:4912743-4912762 None:intergenic 35.0%
AAATTGTTCACCTCCACTAT+CGG + chr6_2:4912778-4912797 None:intergenic 35.0%
TGTATCATGGATAACAAGGA+AGG + chr6_2:4912811-4912830 None:intergenic 35.0%
TGTGACACCTTAAAAACGAA+TGG - chr6_2:4912892-4912911 Msa0906320:intron 35.0%
!! TTCTGGCTTCAATTATTGTG+AGG - chr6_2:4913039-4913058 Msa0906320:CDS 35.0%
TCTTTGGCATAATGAGGATA+AGG - chr6_2:4913077-4913096 Msa0906320:CDS 35.0%
! TTTTCCATTCCACAAATCCA+AGG - chr6_2:4913191-4913210 Msa0906320:CDS 35.0%
TTTCCATTCCACAAATCCAA+GGG - chr6_2:4913192-4913211 Msa0906320:CDS 35.0%
AAGTATAGAGACAAAGGGAT+AGG + chr6_2:4913252-4913271 None:intergenic 35.0%
! AGACTGGCAAGTTTGATTTA+TGG + chr6_2:4913374-4913393 None:intergenic 35.0%
AGGTTATGTAAAAGCCTCTT+AGG + chr6_2:4913412-4913431 None:intergenic 35.0%
!! ATTGTACTCAGTGTTGACAA+AGG + chr6_2:4913432-4913451 None:intergenic 35.0%
AGAGACCCTAATTCTCTTAA+TGG - chr6_2:4913473-4913492 Msa0906320:CDS 35.0%
TCTATTGGAGTTAAACCATC+TGG + chr6_2:4913527-4913546 None:intergenic 35.0%
GATGGTTTAACTCCAATAGA+TGG - chr6_2:4913527-4913546 Msa0906320:CDS 35.0%
TTAACTCCAATAGATGGTGA+TGG - chr6_2:4913533-4913552 Msa0906320:CDS 35.0%
AAACTAAGCAAGTAACTGGA+GGG + chr6_2:4913670-4913689 None:intergenic 35.0%
TAAACTAAGCAAGTAACTGG+AGG + chr6_2:4913671-4913690 None:intergenic 35.0%
TTTCCTTCTCTTTACCCCAT+TGG - chr6_2:4910689-4910708 Msa0906320:CDS 40.0%
AATGAAGGTAAAGGGCCAAT+GGG + chr6_2:4910707-4910726 None:intergenic 40.0%
TAATGAAGGTAAAGGGCCAA+TGG + chr6_2:4910708-4910727 None:intergenic 40.0%
TCTTGAATGGCTTGAATCCA+AGG - chr6_2:4910799-4910818 Msa0906320:CDS 40.0%
TTCACATAAACAACGGATCC+CGG + chr6_2:4910827-4910846 None:intergenic 40.0%
! AGCAACTGTTGGAATTTGCT+TGG - chr6_2:4910876-4910895 Msa0906320:CDS 40.0%
! GCAACTGTTGGAATTTGCTT+GGG - chr6_2:4910877-4910896 Msa0906320:CDS 40.0%
! CAACTGTTGGAATTTGCTTG+GGG - chr6_2:4910878-4910897 Msa0906320:CDS 40.0%
GGCCTAATGATCCACAAAAA+TGG + chr6_2:4910923-4910942 None:intergenic 40.0%
ATTAGGCCTGATCTTGTCAT+TGG - chr6_2:4910935-4910954 Msa0906320:CDS 40.0%
! GCTCAGTGATTTTGTCATCT+GGG - chr6_2:4910960-4910979 Msa0906320:CDS 40.0%
AGAGGCCTATAATAGCAAGT+TGG - chr6_2:4911004-4911023 Msa0906320:intron 40.0%
!! GGACACCAACTTGCTATTAT+AGG + chr6_2:4911012-4911031 None:intergenic 40.0%
TCAAGAATCCTCCGATTGAA+GGG + chr6_2:4911056-4911075 None:intergenic 40.0%
GATTCTTGACTCATTGTGGA+TGG - chr6_2:4911067-4911086 Msa0906320:intron 40.0%
CTGATCAATGAAGTGATAGC+TGG - chr6_2:4911240-4911259 Msa0906320:intron 40.0%
GAAGTGATAGCTGGAGATAA+AGG - chr6_2:4911249-4911268 Msa0906320:intron 40.0%
AGGAAAGAAGATGAGGCAAA+AGG - chr6_2:4911269-4911288 Msa0906320:intron 40.0%
TTCATGTATGAACAACCACC+TGG + chr6_2:4911333-4911352 None:intergenic 40.0%
TGGTTGTTCATACATGAACC+TGG - chr6_2:4911335-4911354 Msa0906320:intron 40.0%
GAACCTGGACAAAGTGATTA+AGG - chr6_2:4911350-4911369 Msa0906320:intron 40.0%
GGTCCTTTCACAGTTACTAT+AGG - chr6_2:4911611-4911630 Msa0906320:intron 40.0%
TCGCATACATGGTTATGAGT+TGG + chr6_2:4911641-4911660 None:intergenic 40.0%
!!! CACTGGACCACTCTTTTTTT+TGG + chr6_2:4912303-4912322 None:intergenic 40.0%
CGTGAAGAACTAGAATTCTC+AGG - chr6_2:4912606-4912625 Msa0906320:intron 40.0%
ATTGCTCTCTTCTTCGTTGA+TGG + chr6_2:4912670-4912689 None:intergenic 40.0%
GAAGATTGCGATCATTCGTA+AGG + chr6_2:4912855-4912874 None:intergenic 40.0%
AGATAAAAGCCAATGTCCCT+TGG + chr6_2:4913211-4913230 None:intergenic 40.0%
AATGGAATCAATACGGCATG+TGG + chr6_2:4913329-4913348 None:intergenic 40.0%
ACATCACCATCACCATCTAT+TGG + chr6_2:4913542-4913561 None:intergenic 40.0%
ATGAAGGTAAAGGGCCAATG+GGG + chr6_2:4910706-4910725 None:intergenic 45.0%
TATGACACCAGAGCAACTGT+TGG - chr6_2:4910865-4910884 Msa0906320:CDS 45.0%
GCAAATTCCAACAGTTGCTC+TGG + chr6_2:4910875-4910894 None:intergenic 45.0%
! GTTGGAATTTGCTTGGGGTT+TGG - chr6_2:4910883-4910902 Msa0906320:CDS 45.0%
! GGCTCAGTGATTTTGTCATC+TGG - chr6_2:4910959-4910978 Msa0906320:CDS 45.0%
TTAAACCACCCTTCAATCGG+AGG - chr6_2:4911045-4911064 Msa0906320:intron 45.0%
GTCAAGAATCCTCCGATTGA+AGG + chr6_2:4911057-4911076 None:intergenic 45.0%
GGAGGATTCTTGACTCATTG+TGG - chr6_2:4911063-4911082 Msa0906320:intron 45.0%
! ACCACTGAAAGCATATGTGC+TGG - chr6_2:4911096-4911115 Msa0906320:intron 45.0%
TCCAGCACATATGCTTTCAG+TGG + chr6_2:4911100-4911119 None:intergenic 45.0%
! GTTGGCTGGTCAGCAAAAAA+TGG + chr6_2:4911141-4911160 None:intergenic 45.0%
TGCCATCTTCTTCAACTCCA+TGG + chr6_2:4911295-4911314 None:intergenic 45.0%
GGAGTTGAAGAAGATGGCAA+TGG - chr6_2:4911296-4911315 Msa0906320:intron 45.0%
CCTCCTTAATCACTTTGTCC+AGG + chr6_2:4911356-4911375 None:intergenic 45.0%
CCTGGACAAAGTGATTAAGG+AGG - chr6_2:4911353-4911372 Msa0906320:intron 45.0%
ACACATCCATCCCTCTTGAT+TGG - chr6_2:4912154-4912173 Msa0906320:intron 45.0%
TTGGAATGCCGTGCAAGTAT+TGG - chr6_2:4912474-4912493 Msa0906320:intron 45.0%
TGTCCCTTGGATTTGTGGAA+TGG + chr6_2:4913198-4913217 None:intergenic 45.0%
TCCACAAATCCAAGGGACAT+TGG - chr6_2:4913199-4913218 Msa0906320:CDS 45.0%
CAAACTTGCCAGTCTTGCAA+AGG - chr6_2:4913379-4913398 Msa0906320:intron 45.0%
GTGAAGAACCTTTGCAAGAC+TGG + chr6_2:4913390-4913409 None:intergenic 45.0%
GCAAAGGTTCTTCACCTAAG+AGG - chr6_2:4913395-4913414 Msa0906320:intron 45.0%
TGCTTCGAGACTATTCCAGA+TGG - chr6_2:4913509-4913528 Msa0906320:CDS 45.0%
CAAGAAGTTCGCGAAATGGT+TGG + chr6_2:4913613-4913632 None:intergenic 45.0%
CTAGCAAGAAGTTCGCGAAA+TGG + chr6_2:4913617-4913636 None:intergenic 45.0%
ATGGCTTGAATCCAAGGAGC+CGG - chr6_2:4910805-4910824 Msa0906320:CDS 50.0%
AGGCCTGATCTTGTCATTGG+TGG - chr6_2:4910938-4910957 Msa0906320:CDS 50.0%
GAGCCACCAATGACAAGATC+AGG + chr6_2:4910944-4910963 None:intergenic 50.0%
AGAATCCTCCGATTGAAGGG+TGG + chr6_2:4911053-4911072 None:intergenic 50.0%
GAAGATGAGGCAAAAGGCCA+TGG - chr6_2:4911275-4911294 Msa0906320:intron 50.0%
GGCCATGGAGTTGAAGAAGA+TGG - chr6_2:4911290-4911309 Msa0906320:intron 50.0%
GCAATGGAGAACACTAGACC+AGG - chr6_2:4911312-4911331 Msa0906320:intron 50.0%
ATGGAGAACACTAGACCAGG+TGG - chr6_2:4911315-4911334 Msa0906320:intron 50.0%
GGACGCACAACGCTTTAATG+TGG + chr6_2:4912757-4912776 None:intergenic 50.0%
GCCAATGTCCCTTGGATTTG+TGG + chr6_2:4913203-4913222 None:intergenic 50.0%
GAAGTTCGCGAAATGGTTGG+AGG + chr6_2:4913610-4913629 None:intergenic 50.0%
GGGCCAATGGGGTAAAGAGA+AGG + chr6_2:4910695-4910714 None:intergenic 55.0%
TGGCTTGAATCCAAGGAGCC+GGG - chr6_2:4910806-4910825 Msa0906320:CDS 55.0%
!! CTGGAGTGCCGATGTTGTGT+TGG - chr6_2:4911115-4911134 Msa0906320:intron 55.0%
! AAGCGTTGTGCGTCCGATAG+TGG - chr6_2:4912762-4912781 Msa0906320:intron 55.0%
GAGACAAAGGGATAGGCCAG+TGG + chr6_2:4913245-4913264 None:intergenic 55.0%
CTCCATGAGTCTTCCACTGC+TGG - chr6_2:4913638-4913657 Msa0906320:CDS 55.0%
GACCAGCAGTGGAAGACTCA+TGG + chr6_2:4913643-4913662 None:intergenic 55.0%
TGGAGGGATAAGACCAGCAG+TGG + chr6_2:4913654-4913673 None:intergenic 55.0%
AACAACGGATCCCGGCTCCT+TGG + chr6_2:4910819-4910838 None:intergenic 60.0%
! CGTTGTGCGTCCGATAGTGG+AGG - chr6_2:4912765-4912784 Msa0906320:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 4910686 4913727 4910686 ID=Msa0906320;Name=Msa0906320
chr6_2 mRNA 4910686 4913727 4910686 ID=Msa0906320-mRNA-1;Parent=Msa0906320;Name=Msa0906320-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|1|1|3|0|274
chr6_2 exon 4913449 4913727 4913449 ID=Msa0906320-mRNA-1:exon:1469;Parent=Msa0906320-mRNA-1
chr6_2 exon 4913039 4913257 4913039 ID=Msa0906320-mRNA-1:exon:1468;Parent=Msa0906320-mRNA-1
chr6_2 exon 4910686 4911012 4910686 ID=Msa0906320-mRNA-1:exon:1467;Parent=Msa0906320-mRNA-1
chr6_2 CDS 4913449 4913727 4913449 ID=Msa0906320-mRNA-1:cds;Parent=Msa0906320-mRNA-1
chr6_2 CDS 4913039 4913257 4913039 ID=Msa0906320-mRNA-1:cds;Parent=Msa0906320-mRNA-1
chr6_2 CDS 4910686 4911012 4910686 ID=Msa0906320-mRNA-1:cds;Parent=Msa0906320-mRNA-1
Gene Sequence

>Msa0906320

ATGTTTCCTTCTCTTTACCCCATTGGCCCTTTACCTTCATTATTAAACCAAACTCCACAAATTCATCAATTGGATTCTTTAGGTTCCAACCTTTGGAAAGTAGATACTGAGTGTCTTGAATGGCTTGAATCCAAGGAGCCGGGATCCGTTGTTTATGTGAATTTTGGCAGCATTACAGTTATGACACCAGAGCAACTGTTGGAATTTGCTTGGGGTTTGGCCAATTGCAATAAACCATTTTTGTGGATCATTAGGCCTGATCTTGTCATTGGTGGCTCACCAACAAACTGTAGATTTATTTGTAATGAATGGGAGATTGGTATGGAAATCGATACAAATGTGAAGAGAAAGGAGTTGGCGAAGCTGATCAATGAAGTGATAGCTGGAGATAAAGGAAAGAAGATGAGGCAAAAGGCCATGGAGTTGAAGAAGATGGCAATGGAGAACACTAGACCAGGTGGTTGTTCATACATGAACCTGGACAAAGTGATTAAGGAGGTTCTTCACCTAAGAGGCTTTTACATAACCTTTGTCAACACTGAGTACAATCACAAACACTTGCTCAAATCAAGAGACCCTAATTCTCTTAATGGTTTCACTGATTTTTGCTTCGAGACTATTCCAGATGGTTTAACTCCAATAGATGGTGATGGTGATGTTACTCAAGACATAAATTCTCTCTGTAAATCAATCAGAAATAACTTCCTCCAACCATTTCGCGAACTTCTTGCTAGACTCCATGAGTCTTCCACTGCTGGTCTTATCCCTCCAGTTACTTGCTTAGTTTATGACTGGAACATGTCCTTTACTATACAAGTTGCTTAA
Protein sequence

>Msa0906320

MFPSLYPIGPLPSLLNQTPQIHQLDSLGSNLWKVDTECLEWLESKEPGSVVYVNFGSITVMTPEQLLEFAWGLANCNKPFLWIIRPDLVIGGSPTNCRFICNEWEIGMEIDTNVKRKELAKLINEVIAGDKGKKMRQKAMELKKMAMENTRPGGCSYMNLDKVIKEVLHLRGFYITFVNTEYNHKHLLKSRDPNSLNGFTDFCFETIPDGLTPIDGDGDVTQDINSLCKSIRNNFLQPFRELLARLHESSTAGLIPPVTCLVYDWNMSFTIQVA*