Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0907060 | XP_013451084.1 | 90.258 | 503 | 40 | 1 | 1 | 503 | 1 | 494 | 0.0 | 875 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0907060 | sp|O49432|QRT3_ARATH | 60.976 | 451 | 173 | 3 | 53 | 501 | 32 | 481 | 0.0 | 549 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0907060 | Msa0976260 | 0.961891 | 3.135834e-120 | -8.615850e-47 |
| Msa0907060 | Msa1362870 | 0.996770 | 5.580961e-232 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0907060 | MtrunA17_Chr6g0455291 | 90.258 | 503 | 40 | 1 | 1 | 503 | 1 | 494 | 0.0 | 875 |
| Msa0907060 | MtrunA17_Chr2g0296981 | 69.034 | 507 | 139 | 4 | 5 | 503 | 1 | 497 | 0.0 | 665 |
| Msa0907060 | MtrunA17_Chr4g0052711 | 47.523 | 444 | 207 | 6 | 77 | 499 | 42 | 480 | 2.06e-134 | 397 |
| Msa0907060 | MtrunA17_Chr2g0297001 | 53.590 | 390 | 158 | 7 | 101 | 471 | 78 | 463 | 8.23e-132 | 391 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0907060 | AT4G20050.5 | 61.111 | 450 | 172 | 3 | 54 | 501 | 58 | 506 | 0.0 | 550 |
| Msa0907060 | AT4G20050.7 | 60.976 | 451 | 173 | 3 | 53 | 501 | 32 | 481 | 0.0 | 549 |
| Msa0907060 | AT4G20050.6 | 60.976 | 451 | 173 | 3 | 53 | 501 | 32 | 481 | 0.0 | 549 |
| Msa0907060 | AT4G20050.2 | 60.976 | 451 | 173 | 3 | 53 | 501 | 32 | 481 | 0.0 | 549 |
| Msa0907060 | AT4G20050.1 | 60.976 | 451 | 173 | 3 | 53 | 501 | 32 | 481 | 0.0 | 549 |
| Msa0907060 | AT4G20050.4 | 65.365 | 384 | 130 | 3 | 120 | 501 | 1 | 383 | 1.95e-179 | 509 |
| Msa0907060 | AT4G20050.3 | 65.365 | 384 | 130 | 3 | 120 | 501 | 1 | 383 | 1.95e-179 | 509 |
| Msa0907060 | AT4G20040.1 | 49.512 | 410 | 183 | 4 | 102 | 493 | 74 | 477 | 2.66e-131 | 390 |
Find 85 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAATTGATTTGTCAAATTT+TGG | 0.107009 | 6_2:+5657871 | Msa0907060:CDS |
| ACTTGTTCAATTTGTTTAAA+AGG | 0.165481 | 6_2:-5659269 | None:intergenic |
| AATATTGAACATTTCTAATA+AGG | 0.212684 | 6_2:-5659412 | None:intergenic |
| TTACCTTTAAGCACTATTTC+TGG | 0.223377 | 6_2:+5656403 | Msa0907060:CDS |
| CCACCAGAAATAGTGCTTAA+AGG | 0.277659 | 6_2:-5656406 | None:intergenic |
| GGTCAAGCTAACATAATTTC+TGG | 0.300088 | 6_2:+5658222 | Msa0907060:CDS |
| TGTGAATGGTATGAATTTAA+AGG | 0.300917 | 6_2:+5659310 | Msa0907060:CDS |
| TATAATAAAGCTAGTGGATT+TGG | 0.307725 | 6_2:+5658255 | Msa0907060:CDS |
| TATATTAGAAACACTTTCAT+TGG | 0.350508 | 6_2:+5658069 | Msa0907060:CDS |
| TCAATCAAAGGCATAGTTAA+TGG | 0.354427 | 6_2:+5659170 | Msa0907060:CDS |
| ATAACACATTTCACTACAAA+TGG | 0.355300 | 6_2:+5658018 | Msa0907060:CDS |
| ATGATATCTATGCATGGAAA+TGG | 0.386160 | 6_2:+5659344 | Msa0907060:CDS |
| TGAACATTTCTAATAAGGTT+AGG | 0.388575 | 6_2:-5659407 | None:intergenic |
| ATTGTTGACAACATGTTCTC+TGG | 0.409396 | 6_2:+5659200 | Msa0907060:CDS |
| GGAATCATGTTTGGTTAAAG+AGG | 0.421087 | 6_2:-5656470 | None:intergenic |
| CTTGAGATGTGAAGTTGAAC+AGG | 0.422590 | 6_2:-5659110 | None:intergenic |
| GGAGAGGGTGAGAGTGAAGA+TGG | 0.434607 | 6_2:-5656505 | None:intergenic |
| ACATTTCTAAGAGCATGATT+AGG | 0.437297 | 6_2:-5659461 | None:intergenic |
| GTGCTATCTGAATTTCCTGT+TGG | 0.443841 | 6_2:-5656743 | None:intergenic |
| TAATTGCATTATCATTCCCT+TGG | 0.444714 | 6_2:-5658155 | None:intergenic |
| ATCTCAAGTAGTTTCTTCCT+TGG | 0.448224 | 6_2:+5659125 | Msa0907060:CDS |
| CTGCAAAAGGTCCAAGTAAA+GGG | 0.456444 | 6_2:+5656795 | Msa0907060:CDS |
| GGTGCTCAAATTAATCTTCA+AGG | 0.476483 | 6_2:+5656848 | Msa0907060:CDS |
| TATATGTTTCATGACCACTT+TGG | 0.482051 | 6_2:-5658050 | None:intergenic |
| TGAAGCAATGGAATCATGTT+TGG | 0.485230 | 6_2:-5656479 | None:intergenic |
| CTCATAATTGTAGGAGGGTG+AGG | 0.486040 | 6_2:-5657899 | None:intergenic |
| TGCATGGAAATGGAACTTCA+TGG | 0.488929 | 6_2:+5659354 | Msa0907060:CDS |
| GTTGCAAGAAATGTTGTGAA+TGG | 0.497121 | 6_2:+5659296 | Msa0907060:CDS |
| GCTGCAAAAGGTCCAAGTAA+AGG | 0.500398 | 6_2:+5656794 | Msa0907060:CDS |
| TCATATGGTGCTGATCCAAC+AGG | 0.501553 | 6_2:+5656728 | Msa0907060:CDS |
| AAGGATTGTAAATTCTTACA+TGG | 0.506307 | 6_2:+5659061 | Msa0907060:CDS |
| GTTTGATGGAAAATCGTTTG+AGG | 0.510842 | 6_2:-5657842 | None:intergenic |
| AATAAAGCTAGTGGATTTGG+TGG | 0.511486 | 6_2:+5658258 | Msa0907060:CDS |
| GCCATAGCTGATGCTGCAAA+AGG | 0.511601 | 6_2:+5656782 | Msa0907060:CDS |
| TGGACTTATTCTTGCCATTG+TGG | 0.512010 | 6_2:-5656320 | None:intergenic |
| TGTTATGTACTCATAATTGT+AGG | 0.514253 | 6_2:-5657908 | None:intergenic |
| ATGAATGGCATAATTGACCT+TGG | 0.516824 | 6_2:+5656824 | Msa0907060:CDS |
| GCTAGTGGATTTGGTGGCAC+AGG | 0.519295 | 6_2:+5658264 | Msa0907060:CDS |
| ATGTTCTCTGGATCAAATCA+TGG | 0.519341 | 6_2:+5659212 | Msa0907060:CDS |
| GACTCAAACTTCAAAGGTGG+AGG | 0.519564 | 6_2:+5657949 | Msa0907060:CDS |
| TTCTCCTATGTCATCATCAC+AGG | 0.523692 | 6_2:+5656558 | Msa0907060:CDS |
| GATATTGGAATTATGATTAG+TGG | 0.527008 | 6_2:+5658201 | Msa0907060:CDS |
| GGCATTGGAATTAGTCTCCA+AGG | 0.529041 | 6_2:+5658138 | Msa0907060:CDS |
| GAGTACCTTGTGACATCATA+TGG | 0.530416 | 6_2:+5656713 | Msa0907060:CDS |
| TTTCTAGACTCAAACTTCAA+AGG | 0.534336 | 6_2:+5657943 | Msa0907060:CDS |
| CAATATTCTTTAAGTGCTAG+TGG | 0.539169 | 6_2:+5659428 | Msa0907060:CDS |
| CCTTTAAGCACTATTTCTGG+TGG | 0.542078 | 6_2:+5656406 | Msa0907060:CDS |
| TGAAGATGGTGGTGAAGCAA+TGG | 0.546527 | 6_2:-5656491 | None:intergenic |
| CTAGGAGATGACATAGGAGA+AGG | 0.548634 | 6_2:-5656532 | None:intergenic |
| CAACAGGTTTAACACAAACA+AGG | 0.552410 | 6_2:+5659042 | Msa0907060:intron |
| ATTTGATGTTAACAGATACA+TGG | 0.552529 | 6_2:+5657805 | Msa0907060:intron |
| ATTGGTCAACACATAACTGC+AGG | 0.563405 | 6_2:+5658087 | Msa0907060:CDS |
| AGATTTCCAAAACCAGCCAC+TGG | 0.570556 | 6_2:-5656905 | None:intergenic |
| TATGTACTCATAATTGTAGG+AGG | 0.570702 | 6_2:-5657905 | None:intergenic |
| CATTGCTATAATAAAGCTAG+TGG | 0.574442 | 6_2:+5658249 | Msa0907060:CDS |
| ATAGGAGAAGGGCTAGGAGA+GGG | 0.577444 | 6_2:-5656520 | None:intergenic |
| TGTGATGATGACATAGGAGA+AGG | 0.592994 | 6_2:-5656556 | None:intergenic |
| GATTAATTTGAGCACCTCCA+AGG | 0.593703 | 6_2:-5656841 | None:intergenic |
| GGAATTTACTTGAAACTACC+AGG | 0.595914 | 6_2:+5658285 | Msa0907060:CDS |
| ATTCTTCTAAAATCAATCAA+AGG | 0.599646 | 6_2:+5659158 | Msa0907060:CDS |
| GATGACATAGGAGAAGGGCT+AGG | 0.601891 | 6_2:-5656526 | None:intergenic |
| CTAGACTCAAACTTCAAAGG+TGG | 0.602601 | 6_2:+5657946 | Msa0907060:CDS |
| GATGACATAGGAGAAGGGCT+AGG | 0.609601 | 6_2:-5656550 | None:intergenic |
| CCAGCCACTGGAAAATGCAA+AGG | 0.626588 | 6_2:-5656893 | None:intergenic |
| GAGGGTGAGAGTGAAGATGG+TGG | 0.629564 | 6_2:-5656502 | None:intergenic |
| TAGGAGATGACATAGGAGAA+GGG | 0.631480 | 6_2:-5656531 | None:intergenic |
| ATTACCTGTGATGATGACAT+AGG | 0.631918 | 6_2:-5656562 | None:intergenic |
| GTGATGATGACATAGGAGAA+GGG | 0.635434 | 6_2:-5656555 | None:intergenic |
| ATCAGAAGCATGAACCACAA+TGG | 0.637219 | 6_2:-5656340 | None:intergenic |
| TCAGCAATGATATCTATGCA+TGG | 0.639349 | 6_2:+5659338 | Msa0907060:CDS |
| GCATTGGAATTAGTCTCCAA+GGG | 0.641926 | 6_2:+5658139 | Msa0907060:CDS |
| CATAGGAGAAGGGCTAGGAG+AGG | 0.643169 | 6_2:-5656521 | None:intergenic |
| CAGCACCATATGATGTCACA+AGG | 0.645343 | 6_2:-5656718 | None:intergenic |
| GAAGAATCTTTGCATCACCA+AGG | 0.647203 | 6_2:-5659142 | None:intergenic |
| GAAGGGCTAGGAGATGACAT+AGG | 0.651600 | 6_2:-5656538 | None:intergenic |
| ATGTACTCATAATTGTAGGA+GGG | 0.651633 | 6_2:-5657904 | None:intergenic |
| GCTCAAATTAATCTTCAAGG+TGG | 0.652201 | 6_2:+5656851 | Msa0907060:CDS |
| TGGCAAGAATAAGTCCATTG+TGG | 0.661515 | 6_2:+5656326 | Msa0907060:CDS |
| GCATGAGTTACAAAGAAACA+AGG | 0.666734 | 6_2:-5656367 | None:intergenic |
| GGTCAACACATAACTGCAGG+AGG | 0.681897 | 6_2:+5658090 | Msa0907060:CDS |
| AATGGCATAATTGACCTTGG+AGG | 0.687495 | 6_2:+5656827 | Msa0907060:CDS |
| GATGTCACAAGGTACTCATG+TGG | 0.688833 | 6_2:-5656707 | None:intergenic |
| TGTTGTGATTGAAACAAGTG+TGG | 0.691769 | 6_2:+5659496 | Msa0907060:CDS |
| TCACCAAATGAAAACCACAA+TGG | 0.717638 | 6_2:+5656306 | None:intergenic |
| TGATGTTAACAGATACATGG+AGG | 0.722635 | 6_2:+5657808 | Msa0907060:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTAATTTTGTTAAAATTTA+AGG | + | chr6_2:5657027-5657046 | Msa0907060:intron | 10.0% |
| !! | GATTATTTATATTAAAGTTA+AGG | + | chr6_2:5658330-5658349 | Msa0907060:intron | 10.0% |
| !!! | AAAAATGAAAGAAAATTTTC+AGG | + | chr6_2:5658117-5658136 | Msa0907060:CDS | 15.0% |
| !!! | TTATAATGTCAAACTTTTAT+CGG | - | chr6_2:5658446-5658465 | None:intergenic | 15.0% |
| !!! | GTTTGACATTATAATTTTAA+AGG | + | chr6_2:5658452-5658471 | Msa0907060:intron | 15.0% |
| !! | AGAAATTATCATTAATTAAG+TGG | - | chr6_2:5658516-5658535 | None:intergenic | 15.0% |
| !! | AATGTTTAAAAAAAAATGGA+AGG | - | chr6_2:5658539-5658558 | None:intergenic | 15.0% |
| !! | GTTGAATGTTTAAAAAAAAA+TGG | - | chr6_2:5658543-5658562 | None:intergenic | 15.0% |
| !! | ATAGTGATTAAAATAAAACA+AGG | - | chr6_2:5658580-5658599 | None:intergenic | 15.0% |
| !!! | ACTTTTTTTAAGTAGTTTAA+TGG | - | chr6_2:5658922-5658941 | None:intergenic | 15.0% |
| !! | AATATTGAACATTTCTAATA+AGG | - | chr6_2:5659415-5659434 | None:intergenic | 15.0% |
| !! | TTAGAAAAATATGGATGATA+CGG | + | chr6_2:5656614-5656633 | Msa0907060:intron | 20.0% |
| !!! | TAGAATTTTAATGTTAATGC+AGG | + | chr6_2:5656673-5656692 | Msa0907060:intron | 20.0% |
| !!! | AATTTTTGTAAAAACCACTA+TGG | + | chr6_2:5657169-5657188 | Msa0907060:intron | 20.0% |
| !!! | AAAGTCTTTTGTCTATAAAA+AGG | - | chr6_2:5657253-5657272 | None:intergenic | 20.0% |
| !! | ATTTCAAACATATATCTGTT+TGG | - | chr6_2:5657486-5657505 | None:intergenic | 20.0% |
| !!! | TCAATTAGATTTTTGTTTGA+TGG | - | chr6_2:5657859-5657878 | None:intergenic | 20.0% |
| !!! | CTAATTGATTTGTCAAATTT+TGG | + | chr6_2:5657871-5657890 | Msa0907060:CDS | 20.0% |
| !! | TATATTAGAAACACTTTCAT+TGG | + | chr6_2:5658069-5658088 | Msa0907060:CDS | 20.0% |
| !! | TATAATCAAAAACAATTACC+TGG | - | chr6_2:5658306-5658325 | None:intergenic | 20.0% |
| !! | AAAACATGATATATTTGCAA+TGG | - | chr6_2:5658372-5658391 | None:intergenic | 20.0% |
| !!! | CATTATAATTTTAAAGGATG+AGG | + | chr6_2:5658458-5658477 | Msa0907060:intron | 20.0% |
| !!! | ATTCTTCTAAAATCAATCAA+AGG | + | chr6_2:5659158-5659177 | Msa0907060:CDS | 20.0% |
| !!! | ACTTGTTCAATTTGTTTAAA+AGG | - | chr6_2:5659272-5659291 | None:intergenic | 20.0% |
| !!! | TATTTTTCTAAGGATGAGTT+AGG | - | chr6_2:5656605-5656624 | None:intergenic | 25.0% |
| ! | AACTCATCCTTAGAAAAATA+TGG | + | chr6_2:5656605-5656624 | Msa0907060:intron | 25.0% |
| !! | GTATCATCCATATTTTTCTA+AGG | - | chr6_2:5656615-5656634 | None:intergenic | 25.0% |
| ! | ACCATTCTTGGTAAATTATT+AGG | + | chr6_2:5656946-5656965 | Msa0907060:intron | 25.0% |
| ! | ACCTAATAATTTACCAAGAA+TGG | - | chr6_2:5656950-5656969 | None:intergenic | 25.0% |
| ! | CGATTTCAAACATATTTGTT+TGG | - | chr6_2:5657095-5657114 | None:intergenic | 25.0% |
| ! | AAAATTATGGTATACCATAG+TGG | - | chr6_2:5657186-5657205 | None:intergenic | 25.0% |
| ! | CGTTTCGATTGAAAAAATTA+TGG | - | chr6_2:5657199-5657218 | None:intergenic | 25.0% |
| !!! | TATTGACTCAAGAAAAGAAA+GGG | - | chr6_2:5657332-5657351 | None:intergenic | 25.0% |
| !!! | ATATTGACTCAAGAAAAGAA+AGG | - | chr6_2:5657333-5657352 | None:intergenic | 25.0% |
| !! | ATGTCAAATTTGATGTCTTT+TGG | - | chr6_2:5657368-5657387 | None:intergenic | 25.0% |
| !! | CAAGGTAAAGTACATTATTT+TGG | + | chr6_2:5657709-5657728 | Msa0907060:intron | 25.0% |
| !! | ATGTCAAATTTGATGTCTTT+TGG | - | chr6_2:5657368-5657387 | None:intergenic | 25.0% |
| ! | ATTTGATGTTAACAGATACA+TGG | + | chr6_2:5657805-5657824 | Msa0907060:intron | 25.0% |
| ! | TGTTATGTACTCATAATTGT+AGG | - | chr6_2:5657911-5657930 | None:intergenic | 25.0% |
| ! | ATAACACATTTCACTACAAA+TGG | + | chr6_2:5658018-5658037 | Msa0907060:CDS | 25.0% |
| ! | GATATTGGAATTATGATTAG+TGG | + | chr6_2:5658201-5658220 | Msa0907060:CDS | 25.0% |
| !!! | TATAATAAAGCTAGTGGATT+TGG | + | chr6_2:5658255-5658274 | Msa0907060:CDS | 25.0% |
| ! | TTATCGGTAAAAAAAAACAG+TGG | - | chr6_2:5658430-5658449 | None:intergenic | 25.0% |
| ! | GACTAAAATGGATATTAAGA+GGG | + | chr6_2:5658663-5658682 | Msa0907060:intron | 25.0% |
| !! | CAACTTTGTCAAATTTTACA+AGG | + | chr6_2:5658693-5658712 | Msa0907060:intron | 25.0% |
| ! | GACATGTAATAAATTCATGT+AGG | - | chr6_2:5659014-5659033 | None:intergenic | 25.0% |
| ! | AAGGATTGTAAATTCTTACA+TGG | + | chr6_2:5659061-5659080 | Msa0907060:CDS | 25.0% |
| ! | TGTGAATGGTATGAATTTAA+AGG | + | chr6_2:5659310-5659329 | Msa0907060:CDS | 25.0% |
| ! | TGAACATTTCTAATAAGGTT+AGG | - | chr6_2:5659410-5659429 | None:intergenic | 25.0% |
| TTACCTTTAAGCACTATTTC+TGG | + | chr6_2:5656403-5656422 | Msa0907060:CDS | 30.0% | |
| TTCATCAAAAACCCTTTACT+TGG | - | chr6_2:5656809-5656828 | None:intergenic | 30.0% | |
| ! | AGTAAAGGGTTTTTGATGAA+TGG | + | chr6_2:5656809-5656828 | Msa0907060:CDS | 30.0% |
| AAGTTTGAAGAAACCATTCT+TGG | + | chr6_2:5656934-5656953 | Msa0907060:intron | 30.0% | |
| TCGCTGTAAAAACTTTATGA+AGG | - | chr6_2:5657004-5657023 | None:intergenic | 30.0% | |
| AAGTGAGTTTGACAAAATCA+TGG | - | chr6_2:5657596-5657615 | None:intergenic | 30.0% | |
| ! | TCAAATTTGATGTCTTTTGG+AGG | - | chr6_2:5657365-5657384 | None:intergenic | 30.0% |
| ATGTACTCATAATTGTAGGA+GGG | - | chr6_2:5657907-5657926 | None:intergenic | 30.0% | |
| TATGTACTCATAATTGTAGG+AGG | - | chr6_2:5657908-5657927 | None:intergenic | 30.0% | |
| TTTCTAGACTCAAACTTCAA+AGG | + | chr6_2:5657943-5657962 | Msa0907060:CDS | 30.0% | |
| !! | AATGGAATTTTAGTCCAAAG+TGG | + | chr6_2:5658036-5658055 | Msa0907060:CDS | 30.0% |
| TATATGTTTCATGACCACTT+TGG | - | chr6_2:5658053-5658072 | None:intergenic | 30.0% | |
| !! | GAAAGAAAATTTTCAGGCAT+TGG | + | chr6_2:5658123-5658142 | Msa0907060:CDS | 30.0% |
| TAATTGCATTATCATTCCCT+TGG | - | chr6_2:5658158-5658177 | None:intergenic | 30.0% | |
| !!! | GTGATTTTTTCTGCTGATAT+TGG | + | chr6_2:5658186-5658205 | Msa0907060:CDS | 30.0% |
| CATTGCTATAATAAAGCTAG+TGG | + | chr6_2:5658249-5658268 | Msa0907060:CDS | 30.0% | |
| GGTTCAAATCTCATTTAAGA+CGG | + | chr6_2:5658479-5658498 | Msa0907060:intron | 30.0% | |
| GGACTAAAATGGATATTAAG+AGG | + | chr6_2:5658662-5658681 | Msa0907060:intron | 30.0% | |
| TATCAACTAAGCTACACTTA+CGG | - | chr6_2:5658815-5658834 | None:intergenic | 30.0% | |
| ! | AAAATTTGGGGTTCAAATCT+CGG | - | chr6_2:5658866-5658885 | None:intergenic | 30.0% |
| TGTGGAGAAGTGAAAAATTT+GGG | - | chr6_2:5658879-5658898 | None:intergenic | 30.0% | |
| ATGTGGAGAAGTGAAAAATT+TGG | - | chr6_2:5658880-5658899 | None:intergenic | 30.0% | |
| ! | TTTTCACTTCTCCACATTTA+AGG | + | chr6_2:5658883-5658902 | Msa0907060:intron | 30.0% |
| AAATTTGCACACCTTAAATG+TGG | - | chr6_2:5658897-5658916 | None:intergenic | 30.0% | |
| ! | CTTAAAAAAAGTGCGAAACA+TGG | + | chr6_2:5658930-5658949 | Msa0907060:intron | 30.0% |
| ! | TACATGTCTAACTTTTCAAC+AGG | + | chr6_2:5659026-5659045 | Msa0907060:intron | 30.0% |
| ! | TCAATCAAAGGCATAGTTAA+TGG | + | chr6_2:5659170-5659189 | Msa0907060:CDS | 30.0% |
| ATGATATCTATGCATGGAAA+TGG | + | chr6_2:5659344-5659363 | Msa0907060:CDS | 30.0% | |
| CAATATTCTTTAAGTGCTAG+TGG | + | chr6_2:5659428-5659447 | Msa0907060:CDS | 30.0% | |
| ! | ACATTTCTAAGAGCATGATT+AGG | - | chr6_2:5659464-5659483 | None:intergenic | 30.0% |
| !! | TGCAAATGTTTTTGTCAAAG+TGG | + | chr6_2:5659526-5659545 | Msa0907060:CDS | 30.0% |
| GCATGAGTTACAAAGAAACA+AGG | - | chr6_2:5656370-5656389 | None:intergenic | 35.0% | |
| GGAATCATGTTTGGTTAAAG+AGG | - | chr6_2:5656473-5656492 | None:intergenic | 35.0% | |
| TGAAGCAATGGAATCATGTT+TGG | - | chr6_2:5656482-5656501 | None:intergenic | 35.0% | |
| ! | ATTACCTGTGATGATGACAT+AGG | - | chr6_2:5656565-5656584 | None:intergenic | 35.0% |
| ATGAATGGCATAATTGACCT+TGG | + | chr6_2:5656824-5656843 | Msa0907060:CDS | 35.0% | |
| GGTGCTCAAATTAATCTTCA+AGG | + | chr6_2:5656848-5656867 | Msa0907060:CDS | 35.0% | |
| GCTCAAATTAATCTTCAAGG+TGG | + | chr6_2:5656851-5656870 | Msa0907060:CDS | 35.0% | |
| TAAGAAGTTGCAGCAAAACA+AGG | + | chr6_2:5657288-5657307 | Msa0907060:intron | 35.0% | |
| TAAGAAGTTGCAGCATATCA+AGG | + | chr6_2:5657691-5657710 | Msa0907060:intron | 35.0% | |
| TGATGTTAACAGATACATGG+AGG | + | chr6_2:5657808-5657827 | Msa0907060:intron | 35.0% | |
| GTTTGATGGAAAATCGTTTG+AGG | - | chr6_2:5657845-5657864 | None:intergenic | 35.0% | |
| GGTCAAGCTAACATAATTTC+TGG | + | chr6_2:5658222-5658241 | Msa0907060:CDS | 35.0% | |
| !! | AATAAAGCTAGTGGATTTGG+TGG | + | chr6_2:5658258-5658277 | Msa0907060:CDS | 35.0% |
| GGAATTTACTTGAAACTACC+AGG | + | chr6_2:5658285-5658304 | Msa0907060:CDS | 35.0% | |
| AGAATCAAGTGCATGTTACA+AGG | - | chr6_2:5658628-5658647 | None:intergenic | 35.0% | |
| TGATTCTAGTCCTCAAAATG+AGG | + | chr6_2:5658641-5658660 | Msa0907060:intron | 35.0% | |
| !! | CCATTTTAGTCCTCATTTTG+AGG | - | chr6_2:5658654-5658673 | None:intergenic | 35.0% |
| CCTCAAAATGAGGACTAAAA+TGG | + | chr6_2:5658651-5658670 | Msa0907060:intron | 35.0% | |
| ATCAACTAAGCTACACTTAC+GGG | - | chr6_2:5658814-5658833 | None:intergenic | 35.0% | |
| GTGGAGAAGTGAAAAATTTG+GGG | - | chr6_2:5658878-5658897 | None:intergenic | 35.0% | |
| CAACAGGTTTAACACAAACA+AGG | + | chr6_2:5659042-5659061 | Msa0907060:intron | 35.0% | |
| ATCTCAAGTAGTTTCTTCCT+TGG | + | chr6_2:5659125-5659144 | Msa0907060:CDS | 35.0% | |
| ATTGTTGACAACATGTTCTC+TGG | + | chr6_2:5659200-5659219 | Msa0907060:CDS | 35.0% | |
| ATGTTCTCTGGATCAAATCA+TGG | + | chr6_2:5659212-5659231 | Msa0907060:CDS | 35.0% | |
| GTTGCAAGAAATGTTGTGAA+TGG | + | chr6_2:5659296-5659315 | Msa0907060:CDS | 35.0% | |
| TCAGCAATGATATCTATGCA+TGG | + | chr6_2:5659338-5659357 | Msa0907060:CDS | 35.0% | |
| TGTTGTGATTGAAACAAGTG+TGG | + | chr6_2:5659496-5659515 | Msa0907060:CDS | 35.0% | |
| TGGACTTATTCTTGCCATTG+TGG | - | chr6_2:5656323-5656342 | None:intergenic | 40.0% | |
| TGGCAAGAATAAGTCCATTG+TGG | + | chr6_2:5656326-5656345 | Msa0907060:CDS | 40.0% | |
| ! | ATCAGAAGCATGAACCACAA+TGG | - | chr6_2:5656343-5656362 | None:intergenic | 40.0% |
| CCACCAGAAATAGTGCTTAA+AGG | - | chr6_2:5656409-5656428 | None:intergenic | 40.0% | |
| !! | CCTTTAAGCACTATTTCTGG+TGG | + | chr6_2:5656406-5656425 | Msa0907060:CDS | 40.0% |
| TAGGAGATGACATAGGAGAA+GGG | - | chr6_2:5656534-5656553 | None:intergenic | 40.0% | |
| ! | GTGATGATGACATAGGAGAA+GGG | - | chr6_2:5656558-5656577 | None:intergenic | 40.0% |
| ! | TGTGATGATGACATAGGAGA+AGG | - | chr6_2:5656559-5656578 | None:intergenic | 40.0% |
| TTCTCCTATGTCATCATCAC+AGG | + | chr6_2:5656558-5656577 | Msa0907060:CDS | 40.0% | |
| GAGTACCTTGTGACATCATA+TGG | + | chr6_2:5656713-5656732 | Msa0907060:CDS | 40.0% | |
| GTGCTATCTGAATTTCCTGT+TGG | - | chr6_2:5656746-5656765 | None:intergenic | 40.0% | |
| CTGCAAAAGGTCCAAGTAAA+GGG | + | chr6_2:5656795-5656814 | Msa0907060:CDS | 40.0% | |
| AATGGCATAATTGACCTTGG+AGG | + | chr6_2:5656827-5656846 | Msa0907060:CDS | 40.0% | |
| ! | GATTAATTTGAGCACCTCCA+AGG | - | chr6_2:5656844-5656863 | None:intergenic | 40.0% |
| ! | CAAACCTTTGCATTTTCCAG+TGG | + | chr6_2:5656889-5656908 | Msa0907060:CDS | 40.0% |
| !!! | GGCTGGTTTTGGAAATCTTA+TGG | + | chr6_2:5656910-5656929 | Msa0907060:CDS | 40.0% |
| TTGCTGCAACTTCTTAGTCT+TGG | - | chr6_2:5657284-5657303 | None:intergenic | 40.0% | |
| CTAGACTCAAACTTCAAAGG+TGG | + | chr6_2:5657946-5657965 | Msa0907060:CDS | 40.0% | |
| ATTGGTCAACACATAACTGC+AGG | + | chr6_2:5658087-5658106 | Msa0907060:CDS | 40.0% | |
| ! | GCATTGGAATTAGTCTCCAA+GGG | + | chr6_2:5658139-5658158 | Msa0907060:CDS | 40.0% |
| ! | CTGAGGTATTATTTGCGCAA+GGG | + | chr6_2:5658840-5658859 | Msa0907060:intron | 40.0% |
| GCGAAACATGGTAAATTTGC+AGG | + | chr6_2:5658942-5658961 | Msa0907060:intron | 40.0% | |
| CTTGAGATGTGAAGTTGAAC+AGG | - | chr6_2:5659113-5659132 | None:intergenic | 40.0% | |
| GAAGAATCTTTGCATCACCA+AGG | - | chr6_2:5659145-5659164 | None:intergenic | 40.0% | |
| TGCATGGAAATGGAACTTCA+TGG | + | chr6_2:5659354-5659373 | Msa0907060:CDS | 40.0% | |
| ! | TGAAGATGGTGGTGAAGCAA+TGG | - | chr6_2:5656494-5656513 | None:intergenic | 45.0% |
| CTAGGAGATGACATAGGAGA+AGG | - | chr6_2:5656535-5656554 | None:intergenic | 45.0% | |
| ! | GATGTCACAAGGTACTCATG+TGG | - | chr6_2:5656710-5656729 | None:intergenic | 45.0% |
| CAGCACCATATGATGTCACA+AGG | - | chr6_2:5656721-5656740 | None:intergenic | 45.0% | |
| !! | TCATATGGTGCTGATCCAAC+AGG | + | chr6_2:5656728-5656747 | Msa0907060:CDS | 45.0% |
| ! | ACCTTTTGCAGCATCAGCTA+TGG | - | chr6_2:5656786-5656805 | None:intergenic | 45.0% |
| GCTGCAAAAGGTCCAAGTAA+AGG | + | chr6_2:5656794-5656813 | Msa0907060:CDS | 45.0% | |
| !!! | CATTTTCCAGTGGCTGGTTT+TGG | + | chr6_2:5656899-5656918 | Msa0907060:CDS | 45.0% |
| AGATTTCCAAAACCAGCCAC+TGG | - | chr6_2:5656908-5656927 | None:intergenic | 45.0% | |
| CTCATAATTGTAGGAGGGTG+AGG | - | chr6_2:5657902-5657921 | None:intergenic | 45.0% | |
| GACTCAAACTTCAAAGGTGG+AGG | + | chr6_2:5657949-5657968 | Msa0907060:CDS | 45.0% | |
| ! | GGCATTGGAATTAGTCTCCA+AGG | + | chr6_2:5658138-5658157 | Msa0907060:CDS | 45.0% |
| !! | GCTTAGTTGATAGCTACCTG+AGG | + | chr6_2:5658823-5658842 | Msa0907060:intron | 45.0% |
| CCTTGCGCAAATAATACCTC+AGG | - | chr6_2:5658842-5658861 | None:intergenic | 45.0% | |
| ! | CCTGAGGTATTATTTGCGCA+AGG | + | chr6_2:5658839-5658858 | Msa0907060:intron | 45.0% |
| !! | AAATTTATTTATATTTGAAT+TGG | + | chr6_2:5658601-5658620 | Msa0907060:intron | 5.0% |
| ATAGGAGAAGGGCTAGGAGA+GGG | - | chr6_2:5656523-5656542 | None:intergenic | 50.0% | |
| GATGACATAGGAGAAGGGCT+AGG | - | chr6_2:5656529-5656548 | None:intergenic | 50.0% | |
| GAAGGGCTAGGAGATGACAT+AGG | - | chr6_2:5656541-5656560 | None:intergenic | 50.0% | |
| GATGACATAGGAGAAGGGCT+AGG | - | chr6_2:5656529-5656548 | None:intergenic | 50.0% | |
| GCCATAGCTGATGCTGCAAA+AGG | + | chr6_2:5656782-5656801 | Msa0907060:CDS | 50.0% | |
| CCAGCCACTGGAAAATGCAA+AGG | - | chr6_2:5656896-5656915 | None:intergenic | 50.0% | |
| ! | CCTTTGCATTTTCCAGTGGC+TGG | + | chr6_2:5656893-5656912 | Msa0907060:CDS | 50.0% |
| GGTCAACACATAACTGCAGG+AGG | + | chr6_2:5658090-5658109 | Msa0907060:CDS | 50.0% | |
| GAGGGTGAGAGTGAAGATGG+TGG | - | chr6_2:5656505-5656524 | None:intergenic | 55.0% | |
| GGAGAGGGTGAGAGTGAAGA+TGG | - | chr6_2:5656508-5656527 | None:intergenic | 55.0% | |
| CATAGGAGAAGGGCTAGGAG+AGG | - | chr6_2:5656524-5656543 | None:intergenic | 55.0% | |
| !! | GCTAGTGGATTTGGTGGCAC+AGG | + | chr6_2:5658264-5658283 | Msa0907060:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 5656313 | 5659568 | 5656313 | ID=Msa0907060;Name=Msa0907060 |
| chr6_2 | mRNA | 5656313 | 5659568 | 5656313 | ID=Msa0907060-mRNA-1;Parent=Msa0907060;Name=Msa0907060-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.66|0.25|1|1|1|4|0|503 |
| chr6_2 | exon | 5656313 | 5656579 | 5656313 | ID=Msa0907060-mRNA-1:exon:1708;Parent=Msa0907060-mRNA-1 |
| chr6_2 | exon | 5656695 | 5656931 | 5656695 | ID=Msa0907060-mRNA-1:exon:1709;Parent=Msa0907060-mRNA-1 |
| chr6_2 | exon | 5657820 | 5658306 | 5657820 | ID=Msa0907060-mRNA-1:exon:1710;Parent=Msa0907060-mRNA-1 |
| chr6_2 | exon | 5659048 | 5659568 | 5659048 | ID=Msa0907060-mRNA-1:exon:1711;Parent=Msa0907060-mRNA-1 |
| chr6_2 | CDS | 5656313 | 5656579 | 5656313 | ID=Msa0907060-mRNA-1:cds;Parent=Msa0907060-mRNA-1 |
| chr6_2 | CDS | 5656695 | 5656931 | 5656695 | ID=Msa0907060-mRNA-1:cds;Parent=Msa0907060-mRNA-1 |
| chr6_2 | CDS | 5657820 | 5658306 | 5657820 | ID=Msa0907060-mRNA-1:cds;Parent=Msa0907060-mRNA-1 |
| chr6_2 | CDS | 5659048 | 5659568 | 5659048 | ID=Msa0907060-mRNA-1:cds;Parent=Msa0907060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
