Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362870 | XP_013451084.1 | 90.258 | 503 | 40 | 1 | 1 | 503 | 1 | 494 | 0.0 | 875 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362870 | sp|O49432|QRT3_ARATH | 60.976 | 451 | 173 | 3 | 53 | 501 | 32 | 481 | 0.0 | 549 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362870 | A0A072U5U5 | 90.258 | 503 | 40 | 1 | 1 | 503 | 1 | 494 | 0.0 | 875 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1160670 | Msa1362870 | 0.801942 | 7.096500e-49 | -8.615850e-47 |
| Msa0907060 | Msa1362870 | 0.996770 | 5.580961e-232 | -8.615850e-47 |
| Msa0976260 | Msa1362870 | 0.963225 | 7.966948e-122 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362870 | MtrunA17_Chr6g0455291 | 90.258 | 503 | 40 | 1 | 1 | 503 | 1 | 494 | 0.0 | 875 |
| Msa1362870 | MtrunA17_Chr2g0296981 | 69.034 | 507 | 139 | 4 | 5 | 503 | 1 | 497 | 0.0 | 665 |
| Msa1362870 | MtrunA17_Chr4g0052711 | 47.523 | 444 | 207 | 6 | 77 | 499 | 42 | 480 | 2.06e-134 | 397 |
| Msa1362870 | MtrunA17_Chr2g0297001 | 53.590 | 390 | 158 | 7 | 101 | 471 | 78 | 463 | 8.23e-132 | 391 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362870 | AT4G20050.5 | 61.111 | 450 | 172 | 3 | 54 | 501 | 58 | 506 | 0.0 | 550 |
| Msa1362870 | AT4G20050.7 | 60.976 | 451 | 173 | 3 | 53 | 501 | 32 | 481 | 0.0 | 549 |
| Msa1362870 | AT4G20050.6 | 60.976 | 451 | 173 | 3 | 53 | 501 | 32 | 481 | 0.0 | 549 |
| Msa1362870 | AT4G20050.2 | 60.976 | 451 | 173 | 3 | 53 | 501 | 32 | 481 | 0.0 | 549 |
| Msa1362870 | AT4G20050.1 | 60.976 | 451 | 173 | 3 | 53 | 501 | 32 | 481 | 0.0 | 549 |
| Msa1362870 | AT4G20050.4 | 65.365 | 384 | 130 | 3 | 120 | 501 | 1 | 383 | 1.95e-179 | 509 |
| Msa1362870 | AT4G20050.3 | 65.365 | 384 | 130 | 3 | 120 | 501 | 1 | 383 | 1.95e-179 | 509 |
| Msa1362870 | AT4G20040.1 | 49.512 | 410 | 183 | 4 | 102 | 493 | 74 | 477 | 2.66e-131 | 390 |
Find 85 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAATTGATTTGTCAAATTT+TGG | 0.107009 | tig0017975:+6270 | Msa1362870:CDS |
| ACTTGTTCAATTTGTTTAAA+AGG | 0.165481 | tig0017975:-7670 | None:intergenic |
| AATATTGAACATTTCTAATA+AGG | 0.212684 | tig0017975:-7813 | None:intergenic |
| TTACCTTTAAGCACTATTTC+TGG | 0.223377 | tig0017975:+4800 | Msa1362870:CDS |
| CCACCAGAAATAGTGCTTAA+AGG | 0.277659 | tig0017975:-4803 | None:intergenic |
| GGTCAAGCTAACATAATTTC+TGG | 0.300088 | tig0017975:+6621 | Msa1362870:CDS |
| TGTGAATGGTATGAATTTAA+AGG | 0.300917 | tig0017975:+7711 | Msa1362870:CDS |
| TATAATAAAGCTAGTGGATT+TGG | 0.307725 | tig0017975:+6654 | Msa1362870:CDS |
| TATATTAGAAACACTTTCAT+TGG | 0.350508 | tig0017975:+6468 | Msa1362870:CDS |
| TCAATCAAAGGCATAGTTAA+TGG | 0.354427 | tig0017975:+7571 | Msa1362870:CDS |
| ATAACACATTTCACTACAAA+TGG | 0.355300 | tig0017975:+6417 | Msa1362870:CDS |
| ATGATATCTATGCATGGAAA+TGG | 0.386160 | tig0017975:+7745 | Msa1362870:CDS |
| TGAACATTTCTAATAAGGTT+AGG | 0.388575 | tig0017975:-7808 | None:intergenic |
| ATTGTTGACAACATGTTCTC+TGG | 0.409396 | tig0017975:+7601 | Msa1362870:CDS |
| GGAATCATGTTTGGTTAAAG+AGG | 0.421087 | tig0017975:-4867 | None:intergenic |
| CTTGAGATGTGAAGTTGAAC+AGG | 0.422590 | tig0017975:-7511 | None:intergenic |
| GGAGAGGGTGAGAGTGAAGA+TGG | 0.434607 | tig0017975:-4902 | None:intergenic |
| ACATTTCTAAGAGCATGATT+AGG | 0.437297 | tig0017975:-7862 | None:intergenic |
| GTGCTATCTGAATTTCCTGT+TGG | 0.443841 | tig0017975:-5140 | None:intergenic |
| TAATTGCATTATCATTCCCT+TGG | 0.444714 | tig0017975:-6554 | None:intergenic |
| ATCTCAAGTAGTTTCTTCCT+TGG | 0.448224 | tig0017975:+7526 | Msa1362870:CDS |
| CTGCAAAAGGTCCAAGTAAA+GGG | 0.456444 | tig0017975:+5192 | Msa1362870:CDS |
| GGTGCTCAAATTAATCTTCA+AGG | 0.476483 | tig0017975:+5245 | Msa1362870:CDS |
| TATATGTTTCATGACCACTT+TGG | 0.482051 | tig0017975:-6449 | None:intergenic |
| TGAAGCAATGGAATCATGTT+TGG | 0.485230 | tig0017975:-4876 | None:intergenic |
| CTCATAATTGTAGGAGGGTG+AGG | 0.486040 | tig0017975:-6298 | None:intergenic |
| TGCATGGAAATGGAACTTCA+TGG | 0.488929 | tig0017975:+7755 | Msa1362870:CDS |
| GTTGCAAGAAATGTTGTGAA+TGG | 0.497121 | tig0017975:+7697 | Msa1362870:CDS |
| GCTGCAAAAGGTCCAAGTAA+AGG | 0.500398 | tig0017975:+5191 | Msa1362870:CDS |
| TCATATGGTGCTGATCCAAC+AGG | 0.501553 | tig0017975:+5125 | Msa1362870:CDS |
| AAGGATTGTAAATTCTTACA+TGG | 0.506307 | tig0017975:+7462 | Msa1362870:CDS |
| GTTTGATGGAAAATCGTTTG+AGG | 0.510842 | tig0017975:-6241 | None:intergenic |
| AATAAAGCTAGTGGATTTGG+TGG | 0.511486 | tig0017975:+6657 | Msa1362870:CDS |
| GCCATAGCTGATGCTGCAAA+AGG | 0.511601 | tig0017975:+5179 | Msa1362870:CDS |
| TGGACTTATTCTTGCCATTG+TGG | 0.512010 | tig0017975:-4717 | None:intergenic |
| TGTTATGTACTCATAATTGT+AGG | 0.514253 | tig0017975:-6307 | None:intergenic |
| ATGAATGGCATAATTGACCT+TGG | 0.516824 | tig0017975:+5221 | Msa1362870:CDS |
| GCTAGTGGATTTGGTGGCAC+AGG | 0.519295 | tig0017975:+6663 | Msa1362870:CDS |
| ATGTTCTCTGGATCAAATCA+TGG | 0.519341 | tig0017975:+7613 | Msa1362870:CDS |
| GACTCAAACTTCAAAGGTGG+AGG | 0.519564 | tig0017975:+6348 | Msa1362870:CDS |
| TTCTCCTATGTCATCATCAC+AGG | 0.523692 | tig0017975:+4955 | Msa1362870:CDS |
| GATATTGGAATTATGATTAG+TGG | 0.527008 | tig0017975:+6600 | Msa1362870:CDS |
| GGCATTGGAATTAGTCTCCA+AGG | 0.529041 | tig0017975:+6537 | Msa1362870:CDS |
| GAGTACCTTGTGACATCATA+TGG | 0.530416 | tig0017975:+5110 | Msa1362870:CDS |
| TTTCTAGACTCAAACTTCAA+AGG | 0.534336 | tig0017975:+6342 | Msa1362870:CDS |
| CAATATTCTTTAAGTGCTAG+TGG | 0.539169 | tig0017975:+7829 | Msa1362870:CDS |
| CCTTTAAGCACTATTTCTGG+TGG | 0.542078 | tig0017975:+4803 | Msa1362870:CDS |
| TGAAGATGGTGGTGAAGCAA+TGG | 0.546527 | tig0017975:-4888 | None:intergenic |
| CTAGGAGATGACATAGGAGA+AGG | 0.548634 | tig0017975:-4929 | None:intergenic |
| CAACAGGTTTAACACAAACA+AGG | 0.552410 | tig0017975:+7443 | Msa1362870:intron |
| ATTTGATGTTAACAGATACA+TGG | 0.552529 | tig0017975:+6204 | Msa1362870:intron |
| ATTGGTCAACACATAACTGC+AGG | 0.563405 | tig0017975:+6486 | Msa1362870:CDS |
| AGATTTCCAAAACCAGCCAC+TGG | 0.570556 | tig0017975:-5302 | None:intergenic |
| TATGTACTCATAATTGTAGG+AGG | 0.570702 | tig0017975:-6304 | None:intergenic |
| CATTGCTATAATAAAGCTAG+TGG | 0.574442 | tig0017975:+6648 | Msa1362870:CDS |
| ATAGGAGAAGGGCTAGGAGA+GGG | 0.577444 | tig0017975:-4917 | None:intergenic |
| TGTGATGATGACATAGGAGA+AGG | 0.592994 | tig0017975:-4953 | None:intergenic |
| GATTAATTTGAGCACCTCCA+AGG | 0.593703 | tig0017975:-5238 | None:intergenic |
| GGAATTTACTTGAAACTACC+AGG | 0.595914 | tig0017975:+6684 | Msa1362870:CDS |
| ATTCTTCTAAAATCAATCAA+AGG | 0.599646 | tig0017975:+7559 | Msa1362870:CDS |
| GATGACATAGGAGAAGGGCT+AGG | 0.601891 | tig0017975:-4923 | None:intergenic |
| CTAGACTCAAACTTCAAAGG+TGG | 0.602601 | tig0017975:+6345 | Msa1362870:CDS |
| GATGACATAGGAGAAGGGCT+AGG | 0.609601 | tig0017975:-4947 | None:intergenic |
| CCAGCCACTGGAAAATGCAA+AGG | 0.626588 | tig0017975:-5290 | None:intergenic |
| GAGGGTGAGAGTGAAGATGG+TGG | 0.629564 | tig0017975:-4899 | None:intergenic |
| TAGGAGATGACATAGGAGAA+GGG | 0.631480 | tig0017975:-4928 | None:intergenic |
| ATTACCTGTGATGATGACAT+AGG | 0.631918 | tig0017975:-4959 | None:intergenic |
| GTGATGATGACATAGGAGAA+GGG | 0.635434 | tig0017975:-4952 | None:intergenic |
| ATCAGAAGCATGAACCACAA+TGG | 0.637219 | tig0017975:-4737 | None:intergenic |
| TCAGCAATGATATCTATGCA+TGG | 0.639349 | tig0017975:+7739 | Msa1362870:CDS |
| GCATTGGAATTAGTCTCCAA+GGG | 0.641926 | tig0017975:+6538 | Msa1362870:CDS |
| CATAGGAGAAGGGCTAGGAG+AGG | 0.643169 | tig0017975:-4918 | None:intergenic |
| CAGCACCATATGATGTCACA+AGG | 0.645343 | tig0017975:-5115 | None:intergenic |
| GAAGAATCTTTGCATCACCA+AGG | 0.647203 | tig0017975:-7543 | None:intergenic |
| GAAGGGCTAGGAGATGACAT+AGG | 0.651600 | tig0017975:-4935 | None:intergenic |
| ATGTACTCATAATTGTAGGA+GGG | 0.651633 | tig0017975:-6303 | None:intergenic |
| GCTCAAATTAATCTTCAAGG+TGG | 0.652201 | tig0017975:+5248 | Msa1362870:CDS |
| TGGCAAGAATAAGTCCATTG+TGG | 0.661515 | tig0017975:+4723 | Msa1362870:CDS |
| GCATGAGTTACAAAGAAACA+AGG | 0.666734 | tig0017975:-4764 | None:intergenic |
| GGTCAACACATAACTGCAGG+AGG | 0.681897 | tig0017975:+6489 | Msa1362870:CDS |
| AATGGCATAATTGACCTTGG+AGG | 0.687495 | tig0017975:+5224 | Msa1362870:CDS |
| GATGTCACAAGGTACTCATG+TGG | 0.688833 | tig0017975:-5104 | None:intergenic |
| TGTTGTGATTGAAACAAGTG+TGG | 0.691769 | tig0017975:+7897 | Msa1362870:CDS |
| TCACCAAATGAAAACCACAA+TGG | 0.717638 | tig0017975:+4703 | None:intergenic |
| TGATGTTAACAGATACATGG+AGG | 0.722635 | tig0017975:+6207 | Msa1362870:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAATTTTGTTAAAATTTTA+AGG | + | tig0017975:5425-5444 | Msa1362870:intron | 10.0% |
| !! | GATTATTTATATTAAAGTTA+AGG | + | tig0017975:6729-6748 | Msa1362870:intron | 10.0% |
| !! | TTGAATGTTTAAAAAAAAAT+TGG | - | tig0017975:6942-6961 | None:intergenic | 10.0% |
| !!! | AAAAATGAAAGAAAATTTTC+AGG | + | tig0017975:6516-6535 | Msa1362870:CDS | 15.0% |
| !!! | TTATAATGTCAAACTTTTAT+CGG | - | tig0017975:6845-6864 | None:intergenic | 15.0% |
| !!! | GTTTGACATTATAATTTTAA+AGG | + | tig0017975:6851-6870 | Msa1362870:intron | 15.0% |
| !! | AGAAATTATCATTAATTAAG+TGG | - | tig0017975:6915-6934 | None:intergenic | 15.0% |
| !! | ATGTTTAAAAAAAAATTGGA+AGG | - | tig0017975:6938-6957 | None:intergenic | 15.0% |
| !! | ATAGTGATTAAAATAAAACA+AGG | - | tig0017975:6980-6999 | None:intergenic | 15.0% |
| !!! | ACTTTTTTTAAGTAGTTTAA+TGG | - | tig0017975:7322-7341 | None:intergenic | 15.0% |
| !! | AATATTGAACATTTCTAATA+AGG | - | tig0017975:7816-7835 | None:intergenic | 15.0% |
| !! | TTAGAAAAATATGGATGATA+CGG | + | tig0017975:5011-5030 | Msa1362870:intron | 20.0% |
| !!! | TAGAATTTTAATGTTAATGC+AGG | + | tig0017975:5070-5089 | Msa1362870:intron | 20.0% |
| !!! | AATTTTTGTAAAAACCACTA+TGG | + | tig0017975:5567-5586 | Msa1362870:intron | 20.0% |
| !!! | AAAGTCTTTTGTCTATAAAA+AGG | - | tig0017975:5651-5670 | None:intergenic | 20.0% |
| !! | ATTTCAAACATATATCTGTT+TGG | - | tig0017975:5886-5905 | None:intergenic | 20.0% |
| !!! | TCAATTAGATTTTTGTTTGA+TGG | - | tig0017975:6258-6277 | None:intergenic | 20.0% |
| !!! | CTAATTGATTTGTCAAATTT+TGG | + | tig0017975:6270-6289 | Msa1362870:CDS | 20.0% |
| !! | TATATTAGAAACACTTTCAT+TGG | + | tig0017975:6468-6487 | Msa1362870:CDS | 20.0% |
| !! | TATAATCAAAAACAATTACC+TGG | - | tig0017975:6705-6724 | None:intergenic | 20.0% |
| !! | AAAACATGATATATTTGCAA+TGG | - | tig0017975:6771-6790 | None:intergenic | 20.0% |
| !!! | CATTATAATTTTAAAGGATG+AGG | + | tig0017975:6857-6876 | Msa1362870:intron | 20.0% |
| !!! | ATTCTTCTAAAATCAATCAA+AGG | + | tig0017975:7559-7578 | Msa1362870:CDS | 20.0% |
| !!! | ACTTGTTCAATTTGTTTAAA+AGG | - | tig0017975:7673-7692 | None:intergenic | 20.0% |
| !!! | TATTTTTCTAAGGATGAGTT+AGG | - | tig0017975:5002-5021 | None:intergenic | 25.0% |
| ! | AACTCATCCTTAGAAAAATA+TGG | + | tig0017975:5002-5021 | Msa1362870:intron | 25.0% |
| !! | GTATCATCCATATTTTTCTA+AGG | - | tig0017975:5012-5031 | None:intergenic | 25.0% |
| ! | ACCATTCTTGGTAAATTATT+AGG | + | tig0017975:5343-5362 | Msa1362870:intron | 25.0% |
| ! | ACCTAATAATTTACCAAGAA+TGG | - | tig0017975:5347-5366 | None:intergenic | 25.0% |
| ! | CGATTTCAAACATATTTGTT+TGG | - | tig0017975:5493-5512 | None:intergenic | 25.0% |
| ! | AAAATTATGGTATACCATAG+TGG | - | tig0017975:5584-5603 | None:intergenic | 25.0% |
| ! | CGTTTCGATTGAAAAAATTA+TGG | - | tig0017975:5597-5616 | None:intergenic | 25.0% |
| !!! | TATTGACTCAAGAAAAGAAA+GGG | - | tig0017975:5732-5751 | None:intergenic | 25.0% |
| !!! | ATATTGACTCAAGAAAAGAA+AGG | - | tig0017975:5733-5752 | None:intergenic | 25.0% |
| !! | ATGTCAAATTTGATGTCTTT+TGG | - | tig0017975:5768-5787 | None:intergenic | 25.0% |
| !! | CAAGGTAAAGTACATTATTT+TGG | + | tig0017975:6108-6127 | Msa1362870:intron | 25.0% |
| !! | ATGTCAAATTTGATGTCTTT+TGG | - | tig0017975:5768-5787 | None:intergenic | 25.0% |
| ! | ATTTGATGTTAACAGATACA+TGG | + | tig0017975:6204-6223 | Msa1362870:intron | 25.0% |
| ! | TGTTATGTACTCATAATTGT+AGG | - | tig0017975:6310-6329 | None:intergenic | 25.0% |
| ! | ATAACACATTTCACTACAAA+TGG | + | tig0017975:6417-6436 | Msa1362870:CDS | 25.0% |
| ! | GATATTGGAATTATGATTAG+TGG | + | tig0017975:6600-6619 | Msa1362870:CDS | 25.0% |
| !!! | TATAATAAAGCTAGTGGATT+TGG | + | tig0017975:6654-6673 | Msa1362870:CDS | 25.0% |
| ! | TTATCGGTAAAAAAAAACAG+TGG | - | tig0017975:6829-6848 | None:intergenic | 25.0% |
| ! | GACTAAAATGGATATTAAGA+GGG | + | tig0017975:7063-7082 | Msa1362870:intron | 25.0% |
| !! | CAACTTTGTCAAATTTTACA+AGG | + | tig0017975:7093-7112 | Msa1362870:intron | 25.0% |
| ! | GACATGTAATAAATTCATGT+AGG | - | tig0017975:7415-7434 | None:intergenic | 25.0% |
| ! | AAGGATTGTAAATTCTTACA+TGG | + | tig0017975:7462-7481 | Msa1362870:CDS | 25.0% |
| ! | TGTGAATGGTATGAATTTAA+AGG | + | tig0017975:7711-7730 | Msa1362870:CDS | 25.0% |
| ! | TGAACATTTCTAATAAGGTT+AGG | - | tig0017975:7811-7830 | None:intergenic | 25.0% |
| TTACCTTTAAGCACTATTTC+TGG | + | tig0017975:4800-4819 | Msa1362870:CDS | 30.0% | |
| TTCATCAAAAACCCTTTACT+TGG | - | tig0017975:5206-5225 | None:intergenic | 30.0% | |
| ! | AGTAAAGGGTTTTTGATGAA+TGG | + | tig0017975:5206-5225 | Msa1362870:CDS | 30.0% |
| AAGTTTGAAGAAACCATTCT+TGG | + | tig0017975:5331-5350 | Msa1362870:intron | 30.0% | |
| TCGCTGTAAAAACTTTATGA+AGG | - | tig0017975:5401-5420 | None:intergenic | 30.0% | |
| AAGTGAGTTTGACAAAATCA+TGG | - | tig0017975:5996-6015 | None:intergenic | 30.0% | |
| ! | TCAAATTTGATGTCTTTTGG+AGG | - | tig0017975:5765-5784 | None:intergenic | 30.0% |
| ATGTACTCATAATTGTAGGA+GGG | - | tig0017975:6306-6325 | None:intergenic | 30.0% | |
| TATGTACTCATAATTGTAGG+AGG | - | tig0017975:6307-6326 | None:intergenic | 30.0% | |
| TTTCTAGACTCAAACTTCAA+AGG | + | tig0017975:6342-6361 | Msa1362870:CDS | 30.0% | |
| !! | AATGGAATTTTAGTCCAAAG+TGG | + | tig0017975:6435-6454 | Msa1362870:CDS | 30.0% |
| TATATGTTTCATGACCACTT+TGG | - | tig0017975:6452-6471 | None:intergenic | 30.0% | |
| !! | GAAAGAAAATTTTCAGGCAT+TGG | + | tig0017975:6522-6541 | Msa1362870:CDS | 30.0% |
| TAATTGCATTATCATTCCCT+TGG | - | tig0017975:6557-6576 | None:intergenic | 30.0% | |
| !!! | GTGATTTTTTCTGCTGATAT+TGG | + | tig0017975:6585-6604 | Msa1362870:CDS | 30.0% |
| CATTGCTATAATAAAGCTAG+TGG | + | tig0017975:6648-6667 | Msa1362870:CDS | 30.0% | |
| GGTTCAAATCTCATTTAAGA+CGG | + | tig0017975:6878-6897 | Msa1362870:intron | 30.0% | |
| GGACTAAAATGGATATTAAG+AGG | + | tig0017975:7062-7081 | Msa1362870:intron | 30.0% | |
| TATCAACTAAGCTACACTTA+CGG | - | tig0017975:7215-7234 | None:intergenic | 30.0% | |
| ! | AAAATTTGGGGTTCAAATCT+CGG | - | tig0017975:7266-7285 | None:intergenic | 30.0% |
| TGTGGAGAAGTGAAAAATTT+GGG | - | tig0017975:7279-7298 | None:intergenic | 30.0% | |
| ATGTGGAGAAGTGAAAAATT+TGG | - | tig0017975:7280-7299 | None:intergenic | 30.0% | |
| ! | TTTTCACTTCTCCACATTTA+AGG | + | tig0017975:7283-7302 | Msa1362870:intron | 30.0% |
| AAATTTGCACACCTTAAATG+TGG | - | tig0017975:7297-7316 | None:intergenic | 30.0% | |
| ! | CTTAAAAAAAGTGCGAAACA+TGG | + | tig0017975:7330-7349 | Msa1362870:intron | 30.0% |
| ! | TACATGTCTAACTTTTCAAC+AGG | + | tig0017975:7427-7446 | Msa1362870:intron | 30.0% |
| ! | TCAATCAAAGGCATAGTTAA+TGG | + | tig0017975:7571-7590 | Msa1362870:CDS | 30.0% |
| ATGATATCTATGCATGGAAA+TGG | + | tig0017975:7745-7764 | Msa1362870:CDS | 30.0% | |
| CAATATTCTTTAAGTGCTAG+TGG | + | tig0017975:7829-7848 | Msa1362870:CDS | 30.0% | |
| ! | ACATTTCTAAGAGCATGATT+AGG | - | tig0017975:7865-7884 | None:intergenic | 30.0% |
| !! | TGCAAATGTTTTTGTCAAAG+TGG | + | tig0017975:7927-7946 | Msa1362870:CDS | 30.0% |
| GCATGAGTTACAAAGAAACA+AGG | - | tig0017975:4767-4786 | None:intergenic | 35.0% | |
| GGAATCATGTTTGGTTAAAG+AGG | - | tig0017975:4870-4889 | None:intergenic | 35.0% | |
| TGAAGCAATGGAATCATGTT+TGG | - | tig0017975:4879-4898 | None:intergenic | 35.0% | |
| ! | ATTACCTGTGATGATGACAT+AGG | - | tig0017975:4962-4981 | None:intergenic | 35.0% |
| ATGAATGGCATAATTGACCT+TGG | + | tig0017975:5221-5240 | Msa1362870:CDS | 35.0% | |
| GGTGCTCAAATTAATCTTCA+AGG | + | tig0017975:5245-5264 | Msa1362870:CDS | 35.0% | |
| GCTCAAATTAATCTTCAAGG+TGG | + | tig0017975:5248-5267 | Msa1362870:CDS | 35.0% | |
| TAAGAAGTTGCAGCAAAACA+AGG | + | tig0017975:5688-5707 | Msa1362870:intron | 35.0% | |
| TAAGAAGTTGCAGCATATCA+AGG | + | tig0017975:6090-6109 | Msa1362870:intron | 35.0% | |
| TGATGTTAACAGATACATGG+AGG | + | tig0017975:6207-6226 | Msa1362870:intron | 35.0% | |
| GTTTGATGGAAAATCGTTTG+AGG | - | tig0017975:6244-6263 | None:intergenic | 35.0% | |
| GGTCAAGCTAACATAATTTC+TGG | + | tig0017975:6621-6640 | Msa1362870:CDS | 35.0% | |
| !! | AATAAAGCTAGTGGATTTGG+TGG | + | tig0017975:6657-6676 | Msa1362870:CDS | 35.0% |
| GGAATTTACTTGAAACTACC+AGG | + | tig0017975:6684-6703 | Msa1362870:CDS | 35.0% | |
| AGAATCAAGTGCATGTTACA+AGG | - | tig0017975:7028-7047 | None:intergenic | 35.0% | |
| TGATTCTAGTCCTCAAAATG+AGG | + | tig0017975:7041-7060 | Msa1362870:intron | 35.0% | |
| !! | CCATTTTAGTCCTCATTTTG+AGG | - | tig0017975:7054-7073 | None:intergenic | 35.0% |
| CCTCAAAATGAGGACTAAAA+TGG | + | tig0017975:7051-7070 | Msa1362870:intron | 35.0% | |
| ATCAACTAAGCTACACTTAC+GGG | - | tig0017975:7214-7233 | None:intergenic | 35.0% | |
| GTGGAGAAGTGAAAAATTTG+GGG | - | tig0017975:7278-7297 | None:intergenic | 35.0% | |
| CAACAGGTTTAACACAAACA+AGG | + | tig0017975:7443-7462 | Msa1362870:intron | 35.0% | |
| ATCTCAAGTAGTTTCTTCCT+TGG | + | tig0017975:7526-7545 | Msa1362870:CDS | 35.0% | |
| ATTGTTGACAACATGTTCTC+TGG | + | tig0017975:7601-7620 | Msa1362870:CDS | 35.0% | |
| ATGTTCTCTGGATCAAATCA+TGG | + | tig0017975:7613-7632 | Msa1362870:CDS | 35.0% | |
| GTTGCAAGAAATGTTGTGAA+TGG | + | tig0017975:7697-7716 | Msa1362870:CDS | 35.0% | |
| TCAGCAATGATATCTATGCA+TGG | + | tig0017975:7739-7758 | Msa1362870:CDS | 35.0% | |
| TGTTGTGATTGAAACAAGTG+TGG | + | tig0017975:7897-7916 | Msa1362870:CDS | 35.0% | |
| TGGACTTATTCTTGCCATTG+TGG | - | tig0017975:4720-4739 | None:intergenic | 40.0% | |
| TGGCAAGAATAAGTCCATTG+TGG | + | tig0017975:4723-4742 | Msa1362870:CDS | 40.0% | |
| ! | ATCAGAAGCATGAACCACAA+TGG | - | tig0017975:4740-4759 | None:intergenic | 40.0% |
| CCACCAGAAATAGTGCTTAA+AGG | - | tig0017975:4806-4825 | None:intergenic | 40.0% | |
| !! | CCTTTAAGCACTATTTCTGG+TGG | + | tig0017975:4803-4822 | Msa1362870:CDS | 40.0% |
| TAGGAGATGACATAGGAGAA+GGG | - | tig0017975:4931-4950 | None:intergenic | 40.0% | |
| ! | GTGATGATGACATAGGAGAA+GGG | - | tig0017975:4955-4974 | None:intergenic | 40.0% |
| ! | TGTGATGATGACATAGGAGA+AGG | - | tig0017975:4956-4975 | None:intergenic | 40.0% |
| TTCTCCTATGTCATCATCAC+AGG | + | tig0017975:4955-4974 | Msa1362870:CDS | 40.0% | |
| GAGTACCTTGTGACATCATA+TGG | + | tig0017975:5110-5129 | Msa1362870:CDS | 40.0% | |
| GTGCTATCTGAATTTCCTGT+TGG | - | tig0017975:5143-5162 | None:intergenic | 40.0% | |
| CTGCAAAAGGTCCAAGTAAA+GGG | + | tig0017975:5192-5211 | Msa1362870:CDS | 40.0% | |
| AATGGCATAATTGACCTTGG+AGG | + | tig0017975:5224-5243 | Msa1362870:CDS | 40.0% | |
| ! | GATTAATTTGAGCACCTCCA+AGG | - | tig0017975:5241-5260 | None:intergenic | 40.0% |
| ! | CAAACCTTTGCATTTTCCAG+TGG | + | tig0017975:5286-5305 | Msa1362870:CDS | 40.0% |
| !!! | GGCTGGTTTTGGAAATCTTA+TGG | + | tig0017975:5307-5326 | Msa1362870:CDS | 40.0% |
| TTGCTGCAACTTCTTAGTCT+TGG | - | tig0017975:5684-5703 | None:intergenic | 40.0% | |
| CTAGACTCAAACTTCAAAGG+TGG | + | tig0017975:6345-6364 | Msa1362870:CDS | 40.0% | |
| ATTGGTCAACACATAACTGC+AGG | + | tig0017975:6486-6505 | Msa1362870:CDS | 40.0% | |
| ! | GCATTGGAATTAGTCTCCAA+GGG | + | tig0017975:6538-6557 | Msa1362870:CDS | 40.0% |
| ! | CTGAGGTATTATTTGCGCAA+GGG | + | tig0017975:7240-7259 | Msa1362870:intron | 40.0% |
| GCGAAACATGGTAAATTTGC+AGG | + | tig0017975:7342-7361 | Msa1362870:intron | 40.0% | |
| CTTGAGATGTGAAGTTGAAC+AGG | - | tig0017975:7514-7533 | None:intergenic | 40.0% | |
| GAAGAATCTTTGCATCACCA+AGG | - | tig0017975:7546-7565 | None:intergenic | 40.0% | |
| TGCATGGAAATGGAACTTCA+TGG | + | tig0017975:7755-7774 | Msa1362870:CDS | 40.0% | |
| ! | TGAAGATGGTGGTGAAGCAA+TGG | - | tig0017975:4891-4910 | None:intergenic | 45.0% |
| CTAGGAGATGACATAGGAGA+AGG | - | tig0017975:4932-4951 | None:intergenic | 45.0% | |
| ! | GATGTCACAAGGTACTCATG+TGG | - | tig0017975:5107-5126 | None:intergenic | 45.0% |
| CAGCACCATATGATGTCACA+AGG | - | tig0017975:5118-5137 | None:intergenic | 45.0% | |
| !! | TCATATGGTGCTGATCCAAC+AGG | + | tig0017975:5125-5144 | Msa1362870:CDS | 45.0% |
| ! | ACCTTTTGCAGCATCAGCTA+TGG | - | tig0017975:5183-5202 | None:intergenic | 45.0% |
| GCTGCAAAAGGTCCAAGTAA+AGG | + | tig0017975:5191-5210 | Msa1362870:CDS | 45.0% | |
| !!! | CATTTTCCAGTGGCTGGTTT+TGG | + | tig0017975:5296-5315 | Msa1362870:CDS | 45.0% |
| AGATTTCCAAAACCAGCCAC+TGG | - | tig0017975:5305-5324 | None:intergenic | 45.0% | |
| CTCATAATTGTAGGAGGGTG+AGG | - | tig0017975:6301-6320 | None:intergenic | 45.0% | |
| GACTCAAACTTCAAAGGTGG+AGG | + | tig0017975:6348-6367 | Msa1362870:CDS | 45.0% | |
| ! | GGCATTGGAATTAGTCTCCA+AGG | + | tig0017975:6537-6556 | Msa1362870:CDS | 45.0% |
| !! | GCTTAGTTGATAGCTACCTG+AGG | + | tig0017975:7223-7242 | Msa1362870:intron | 45.0% |
| CCTTGCGCAAATAATACCTC+AGG | - | tig0017975:7242-7261 | None:intergenic | 45.0% | |
| ! | CCTGAGGTATTATTTGCGCA+AGG | + | tig0017975:7239-7258 | Msa1362870:intron | 45.0% |
| !! | AAATTTATTTATATTTGAAT+TGG | + | tig0017975:7001-7020 | Msa1362870:intron | 5.0% |
| ATAGGAGAAGGGCTAGGAGA+GGG | - | tig0017975:4920-4939 | None:intergenic | 50.0% | |
| GATGACATAGGAGAAGGGCT+AGG | - | tig0017975:4926-4945 | None:intergenic | 50.0% | |
| GAAGGGCTAGGAGATGACAT+AGG | - | tig0017975:4938-4957 | None:intergenic | 50.0% | |
| GATGACATAGGAGAAGGGCT+AGG | - | tig0017975:4926-4945 | None:intergenic | 50.0% | |
| GCCATAGCTGATGCTGCAAA+AGG | + | tig0017975:5179-5198 | Msa1362870:CDS | 50.0% | |
| CCAGCCACTGGAAAATGCAA+AGG | - | tig0017975:5293-5312 | None:intergenic | 50.0% | |
| ! | CCTTTGCATTTTCCAGTGGC+TGG | + | tig0017975:5290-5309 | Msa1362870:CDS | 50.0% |
| GGTCAACACATAACTGCAGG+AGG | + | tig0017975:6489-6508 | Msa1362870:CDS | 50.0% | |
| GAGGGTGAGAGTGAAGATGG+TGG | - | tig0017975:4902-4921 | None:intergenic | 55.0% | |
| GGAGAGGGTGAGAGTGAAGA+TGG | - | tig0017975:4905-4924 | None:intergenic | 55.0% | |
| CATAGGAGAAGGGCTAGGAG+AGG | - | tig0017975:4921-4940 | None:intergenic | 55.0% | |
| !! | GCTAGTGGATTTGGTGGCAC+AGG | + | tig0017975:6663-6682 | Msa1362870:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0017975 | gene | 4710 | 7969 | 4710 | ID=Msa1362870;Name=Msa1362870 |
| tig0017975 | mRNA | 4710 | 7969 | 4710 | ID=Msa1362870-mRNA-1;Parent=Msa1362870;Name=Msa1362870-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.66|0.25|1|1|1|4|0|503 |
| tig0017975 | exon | 4710 | 4976 | 4710 | ID=Msa1362870-mRNA-1:exon:13275;Parent=Msa1362870-mRNA-1 |
| tig0017975 | exon | 5092 | 5328 | 5092 | ID=Msa1362870-mRNA-1:exon:13276;Parent=Msa1362870-mRNA-1 |
| tig0017975 | exon | 6219 | 6705 | 6219 | ID=Msa1362870-mRNA-1:exon:13277;Parent=Msa1362870-mRNA-1 |
| tig0017975 | exon | 7449 | 7969 | 7449 | ID=Msa1362870-mRNA-1:exon:13278;Parent=Msa1362870-mRNA-1 |
| tig0017975 | CDS | 4710 | 4976 | 4710 | ID=Msa1362870-mRNA-1:cds;Parent=Msa1362870-mRNA-1 |
| tig0017975 | CDS | 5092 | 5328 | 5092 | ID=Msa1362870-mRNA-1:cds;Parent=Msa1362870-mRNA-1 |
| tig0017975 | CDS | 6219 | 6705 | 6219 | ID=Msa1362870-mRNA-1:cds;Parent=Msa1362870-mRNA-1 |
| tig0017975 | CDS | 7449 | 7969 | 7449 | ID=Msa1362870-mRNA-1:cds;Parent=Msa1362870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
