AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0907410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0907410 MtrunA17_Chr6g0455951 94.301 193 11 0 1 193 1 193 1.26e-129 372
Msa0907410 MtrunA17_Chr6g0455911 78.804 184 38 1 11 193 6 189 6.04e-104 306
Msa0907410 MtrunA17_Chr6g0455981 76.630 184 42 1 11 193 8 191 7.86e-93 278
Msa0907410 MtrunA17_Chr6g0455941 72.449 196 51 2 1 193 1 196 6.89e-90 271
Msa0907410 MtrunA17_Chr7g0220531 65.152 198 64 2 1 193 1 198 1.36e-83 254
Msa0907410 MtrunA17_Chr8g0365971 50.000 198 85 3 11 194 4 201 9.18e-56 176
Msa0907410 MtrunA17_Chr8g0366021 60.526 152 59 1 43 193 45 196 2.95e-53 176
Msa0907410 MtrunA17_Chr5g0437951 41.860 172 95 2 27 193 11 182 2.37e-45 155
Msa0907410 MtrunA17_Chr5g0437961 41.765 170 92 2 25 193 5 168 2.45e-40 141
Msa0907410 MtrunA17_Chr3g0114351 42.105 171 92 2 24 193 9 173 9.03e-38 135
Msa0907410 MtrunA17_Chr2g0333321 43.421 152 81 2 43 193 73 220 1.09e-32 122
Msa0907410 MtrunA17_Chr8g0365991 54.867 113 50 1 43 154 45 157 1.17e-32 115
Msa0907410 MtrunA17_Chr3g0114341 47.222 72 38 0 49 120 26 97 1.14e-17 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0907410 AT3G30390.1 57.459 181 74 2 16 193 12 192 3.52e-64 205
Msa0907410 AT3G30390.3 57.459 181 74 2 16 193 12 192 3.52e-64 205
Msa0907410 AT3G30390.2 57.459 181 74 2 16 193 12 192 3.52e-64 205
Msa0907410 AT5G38820.1 56.322 174 75 1 21 193 11 184 1.56e-61 198
Msa0907410 AT5G38820.3 56.322 174 75 1 21 193 11 184 1.56e-61 198
Msa0907410 AT5G38820.2 56.322 174 75 1 21 193 16 189 1.68e-61 198
Msa0907410 AT3G56200.1 40.698 172 98 2 23 193 4 172 4.47e-38 136
Msa0907410 AT2G40420.1 46.667 150 77 3 24 172 5 152 1.44e-34 127
Msa0907410 AT1G80510.1 42.763 152 82 2 43 193 73 220 1.46e-34 127

Find 47 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTATTGGTGCTGGAATTA+TGG 0.156418 6_2:+6012462 Msa0907410:CDS
TTGGCTTCTAATACAGTATT+TGG 0.164209 6_2:+6012155 Msa0907410:five_prime_UTR
AATTTATCAACCACAATTAT+TGG 0.168967 6_2:+6012448 Msa0907410:CDS
ACATCACTTTCTTGTGTCTT+AGG 0.206909 6_2:-6012379 None:intergenic
TTCTTCCTATGGAAGTCTTA+TGG 0.214598 6_2:+6012606 Msa0907410:CDS
ATTGTAGGTGATGTGATTTC+TGG 0.229977 6_2:+6012806 Msa0907410:intron
TATAATATCTTTGGTTTCAT+TGG 0.243885 6_2:+6012136 Msa0907410:five_prime_UTR
TGCTTCTAATATAATATCTT+TGG 0.257664 6_2:+6012127 Msa0907410:five_prime_UTR
GTTAAGTTTGATGAATTTAA+TGG 0.259661 6_2:+6012400 Msa0907410:CDS
GGAGATGCCTATGGGAAATA+TGG 0.268974 6_2:+6012628 Msa0907410:CDS
TCTTCCTATGGAAGTCTTAT+GGG 0.297191 6_2:+6012607 Msa0907410:CDS
ATTATTGGTGCTGGAATTAT+GGG 0.320496 6_2:+6012463 Msa0907410:CDS
ATCATGTACATGATCATTAT+TGG 0.324628 6_2:+6012697 Msa0907410:CDS
ATTTGTTGTGGTTGCACCTT+TGG 0.333916 6_2:+6012925 Msa0907410:CDS
CAACCTTTGATACACATTAA+AGG 0.338751 6_2:-6012187 None:intergenic
AGTCAATTGATTTCATAATC+AGG 0.357461 6_2:+6012563 Msa0907410:CDS
TTTGGTGTCCATTGGTGGAC+TGG 0.358328 6_2:+6012875 Msa0907410:CDS
TCAACCACAATTATTGGTGC+TGG 0.417512 6_2:+6012454 Msa0907410:CDS
TTGGTGTCCATTGGTGGACT+GGG 0.426711 6_2:+6012876 Msa0907410:CDS
GGTGTCCTTGAAGGATGGTT+TGG 0.437155 6_2:+6012857 Msa0907410:CDS
GCAGGGAAACTTTCTTCCTA+TGG 0.440225 6_2:+6012595 Msa0907410:CDS
AGTCTTATGGGAGATGCCTA+TGG 0.447015 6_2:+6012619 Msa0907410:CDS
TCTCTGTCAATAAAGCTGTT+AGG 0.455879 6_2:-6012540 None:intergenic
TTGGTCAGCTTTAAGCGGAT+TGG 0.477571 6_2:+6012944 Msa0907410:CDS
AAGGATGGTTTGGTGTCCAT+TGG 0.478302 6_2:+6012867 Msa0907410:CDS
GATGGTTTGGTGTCCATTGG+TGG 0.485337 6_2:+6012870 Msa0907410:CDS
CACCATGTTGGTGTCCTTGA+AGG 0.487937 6_2:+6012848 Msa0907410:CDS
TACTTTCGCAACATTTGTTG+TGG 0.503291 6_2:+6012913 Msa0907410:CDS
TGACCTTTAATGTGTATCAA+AGG 0.513941 6_2:+6012184 Msa0907410:five_prime_UTR
GGACACCAAACCATCCTTCA+AGG 0.514169 6_2:-6012862 None:intergenic
GAAATATGGAAAAGCGTCGT+TGG 0.541918 6_2:+6012642 Msa0907410:CDS
CACCTTTGGTCAGCTTTAAG+CGG 0.542192 6_2:+6012939 Msa0907410:CDS
ATTTCTGGAACAACTTCAAG+TGG 0.544374 6_2:+6012821 Msa0907410:CDS
ATGTTGGTGTCCTTGAAGGA+TGG 0.557320 6_2:+6012852 Msa0907410:CDS
GTCTTATGGGAGATGCCTAT+GGG 0.561627 6_2:+6012620 Msa0907410:CDS
TCTTGTGTCTTAGGTAACAA+AGG 0.569279 6_2:-6012370 None:intergenic
ATGTACGCCCAGTCCACCAA+TGG 0.578995 6_2:-6012883 None:intergenic
AATTCCAGCACCAATAATTG+TGG 0.583355 6_2:-6012458 None:intergenic
ATCTCCCATAAGACTTCCAT+AGG 0.587673 6_2:-6012611 None:intergenic
TCAAGTGGAATTCACCATGT+TGG 0.600654 6_2:+6012836 Msa0907410:CDS
TAGAAGCAAGAGAAAATGAG+TGG 0.619382 6_2:-6012112 None:intergenic
AGGACTATGACAATAAGTCC+AGG 0.632772 6_2:-6012520 None:intergenic
AAGCAAGAGAAAATGAGTGG+TGG 0.632943 6_2:-6012109 None:intergenic
ATCCTTCAAGGACACCAACA+TGG 0.633511 6_2:-6012850 None:intergenic
TGAAAAGTGAAAATGACTAG+TGG 0.635089 6_2:+6012280 Msa0907410:exon
ATCCGCTTAAAGCTGACCAA+AGG 0.647778 6_2:-6012941 None:intergenic
GTACATGATCAGACTACCGA+TGG 0.672010 6_2:-6012683 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTTATTCAAAAAATAAAAA+AGG + chr6_2:6012249-6012268 Msa0907410:five_prime_UTR 10.0%
!! GTTTATTCAAAAAATAAAAA+AGG + chr6_2:6012249-6012268 Msa0907410:five_prime_UTR 10.0%
!! TGCTTCTAATATAATATCTT+TGG + chr6_2:6012127-6012146 Msa0907410:five_prime_UTR 20.0%
!!! TATAATATCTTTGGTTTCAT+TGG + chr6_2:6012136-6012155 Msa0907410:five_prime_UTR 20.0%
!!! ATATTTTTCAAGCTGAAAAA+CGG + chr6_2:6012226-6012245 Msa0907410:five_prime_UTR 20.0%
!! GTTAAGTTTGATGAATTTAA+TGG + chr6_2:6012400-6012419 Msa0907410:CDS 20.0%
!! AATTTATCAACCACAATTAT+TGG + chr6_2:6012448-6012467 Msa0907410:CDS 20.0%
!! TATCATTAGAGAAGAATTTA+AGG + chr6_2:6012754-6012773 Msa0907410:intron 20.0%
!!! TTTGTTTTTGTTCATATTGT+AGG + chr6_2:6012791-6012810 Msa0907410:intron 20.0%
!! TGCTTCTAATATAATATCTT+TGG + chr6_2:6012127-6012146 Msa0907410:five_prime_UTR 20.0%
!!! TATAATATCTTTGGTTTCAT+TGG + chr6_2:6012136-6012155 Msa0907410:five_prime_UTR 20.0%
!!! ATATTTTTCAAGCTGAAAAA+CGG + chr6_2:6012226-6012245 Msa0907410:five_prime_UTR 20.0%
!! GTTAAGTTTGATGAATTTAA+TGG + chr6_2:6012400-6012419 Msa0907410:CDS 20.0%
!! AATTTATCAACCACAATTAT+TGG + chr6_2:6012448-6012467 Msa0907410:CDS 20.0%
!! TATCATTAGAGAAGAATTTA+AGG + chr6_2:6012754-6012773 Msa0907410:intron 20.0%
!!! TTTGTTTTTGTTCATATTGT+AGG + chr6_2:6012791-6012810 Msa0907410:intron 20.0%
!!! TATTTTTCAAGCTGAAAAAC+GGG + chr6_2:6012227-6012246 Msa0907410:five_prime_UTR 25.0%
!!! TTTAATGGAGCTTCATTTTT+TGG + chr6_2:6012415-6012434 Msa0907410:CDS 25.0%
!! AGTCAATTGATTTCATAATC+AGG + chr6_2:6012563-6012582 Msa0907410:CDS 25.0%
!! ATTTCATAATCAGGTTTTCT+AGG + chr6_2:6012572-6012591 Msa0907410:CDS 25.0%
!! TTTCATAATCAGGTTTTCTA+GGG + chr6_2:6012573-6012592 Msa0907410:CDS 25.0%
!!! ATATGTGTTTTAAGTACCAT+CGG + chr6_2:6012667-6012686 Msa0907410:CDS 25.0%
! ATCATGTACATGATCATTAT+TGG + chr6_2:6012697-6012716 Msa0907410:CDS 25.0%
! AAAGTCTAGACTTAAGAATA+TGG - chr6_2:6012728-6012747 None:intergenic 25.0%
!!! TATTTTTCAAGCTGAAAAAC+GGG + chr6_2:6012227-6012246 Msa0907410:five_prime_UTR 25.0%
!!! TTTAATGGAGCTTCATTTTT+TGG + chr6_2:6012415-6012434 Msa0907410:CDS 25.0%
!! AGTCAATTGATTTCATAATC+AGG + chr6_2:6012563-6012582 Msa0907410:CDS 25.0%
!! ATTTCATAATCAGGTTTTCT+AGG + chr6_2:6012572-6012591 Msa0907410:CDS 25.0%
!! TTTCATAATCAGGTTTTCTA+GGG + chr6_2:6012573-6012592 Msa0907410:CDS 25.0%
!!! ATATGTGTTTTAAGTACCAT+CGG + chr6_2:6012667-6012686 Msa0907410:CDS 25.0%
! ATCATGTACATGATCATTAT+TGG + chr6_2:6012697-6012716 Msa0907410:CDS 25.0%
! AAAGTCTAGACTTAAGAATA+TGG - chr6_2:6012728-6012747 None:intergenic 25.0%
TTGGCTTCTAATACAGTATT+TGG + chr6_2:6012155-6012174 Msa0907410:five_prime_UTR 30.0%
TGACCTTTAATGTGTATCAA+AGG + chr6_2:6012184-6012203 Msa0907410:five_prime_UTR 30.0%
CAACCTTTGATACACATTAA+AGG - chr6_2:6012190-6012209 None:intergenic 30.0%
TGAAAAGTGAAAATGACTAG+TGG + chr6_2:6012280-6012299 Msa0907410:exon 30.0%
!!! GATTTTTTCTTCTCAGCATT+AGG - chr6_2:6012316-6012335 None:intergenic 30.0%
!! AATTATTGGTGCTGGAATTA+TGG + chr6_2:6012462-6012481 Msa0907410:CDS 30.0%
!! ATTATTGGTGCTGGAATTAT+GGG + chr6_2:6012463-6012482 Msa0907410:CDS 30.0%
ATGTGTGAAAAAGTTAGGAA+TGG + chr6_2:6012495-6012514 Msa0907410:CDS 30.0%
TTGGCTTCTAATACAGTATT+TGG + chr6_2:6012155-6012174 Msa0907410:five_prime_UTR 30.0%
TGACCTTTAATGTGTATCAA+AGG + chr6_2:6012184-6012203 Msa0907410:five_prime_UTR 30.0%
CAACCTTTGATACACATTAA+AGG - chr6_2:6012190-6012209 None:intergenic 30.0%
TGAAAAGTGAAAATGACTAG+TGG + chr6_2:6012280-6012299 Msa0907410:exon 30.0%
!!! GATTTTTTCTTCTCAGCATT+AGG - chr6_2:6012316-6012335 None:intergenic 30.0%
!! AATTATTGGTGCTGGAATTA+TGG + chr6_2:6012462-6012481 Msa0907410:CDS 30.0%
!! ATTATTGGTGCTGGAATTAT+GGG + chr6_2:6012463-6012482 Msa0907410:CDS 30.0%
ATGTGTGAAAAAGTTAGGAA+TGG + chr6_2:6012495-6012514 Msa0907410:CDS 30.0%
TAGAAGCAAGAGAAAATGAG+TGG - chr6_2:6012115-6012134 None:intergenic 35.0%
TCTTGTGTCTTAGGTAACAA+AGG - chr6_2:6012373-6012392 None:intergenic 35.0%
ACATCACTTTCTTGTGTCTT+AGG - chr6_2:6012382-6012401 None:intergenic 35.0%
AATTCCAGCACCAATAATTG+TGG - chr6_2:6012461-6012480 None:intergenic 35.0%
!!! CCTAACTTTTTCACACATAC+AGG - chr6_2:6012493-6012512 None:intergenic 35.0%
CCTGTATGTGTGAAAAAGTT+AGG + chr6_2:6012490-6012509 Msa0907410:CDS 35.0%
TCTCTGTCAATAAAGCTGTT+AGG - chr6_2:6012543-6012562 None:intergenic 35.0%
TTCTTCCTATGGAAGTCTTA+TGG + chr6_2:6012606-6012625 Msa0907410:CDS 35.0%
! TCTTCCTATGGAAGTCTTAT+GGG + chr6_2:6012607-6012626 Msa0907410:CDS 35.0%
ATTGTAGGTGATGTGATTTC+TGG + chr6_2:6012806-6012825 Msa0907410:intron 35.0%
!! ATTTCTGGAACAACTTCAAG+TGG + chr6_2:6012821-6012840 Msa0907410:CDS 35.0%
! TACTTTCGCAACATTTGTTG+TGG + chr6_2:6012913-6012932 Msa0907410:CDS 35.0%
! GATTGGTGAGTGATTTTTCT+TGG + chr6_2:6012961-6012980 Msa0907410:exon 35.0%
TAGAAGCAAGAGAAAATGAG+TGG - chr6_2:6012115-6012134 None:intergenic 35.0%
TCTTGTGTCTTAGGTAACAA+AGG - chr6_2:6012373-6012392 None:intergenic 35.0%
ACATCACTTTCTTGTGTCTT+AGG - chr6_2:6012382-6012401 None:intergenic 35.0%
AATTCCAGCACCAATAATTG+TGG - chr6_2:6012461-6012480 None:intergenic 35.0%
!!! CCTAACTTTTTCACACATAC+AGG - chr6_2:6012493-6012512 None:intergenic 35.0%
CCTGTATGTGTGAAAAAGTT+AGG + chr6_2:6012490-6012509 Msa0907410:CDS 35.0%
TCTCTGTCAATAAAGCTGTT+AGG - chr6_2:6012543-6012562 None:intergenic 35.0%
TTCTTCCTATGGAAGTCTTA+TGG + chr6_2:6012606-6012625 Msa0907410:CDS 35.0%
! TCTTCCTATGGAAGTCTTAT+GGG + chr6_2:6012607-6012626 Msa0907410:CDS 35.0%
ATTGTAGGTGATGTGATTTC+TGG + chr6_2:6012806-6012825 Msa0907410:intron 35.0%
!! ATTTCTGGAACAACTTCAAG+TGG + chr6_2:6012821-6012840 Msa0907410:CDS 35.0%
! TACTTTCGCAACATTTGTTG+TGG + chr6_2:6012913-6012932 Msa0907410:CDS 35.0%
AAGCAAGAGAAAATGAGTGG+TGG - chr6_2:6012112-6012131 None:intergenic 40.0%
TCAACCACAATTATTGGTGC+TGG + chr6_2:6012454-6012473 Msa0907410:CDS 40.0%
AAAAAGTTAGGAATGGTGCC+TGG + chr6_2:6012502-6012521 Msa0907410:CDS 40.0%
AGGACTATGACAATAAGTCC+AGG - chr6_2:6012523-6012542 None:intergenic 40.0%
!!! ATAATCAGGTTTTCTAGGGC+AGG + chr6_2:6012577-6012596 Msa0907410:CDS 40.0%
!!! TAATCAGGTTTTCTAGGGCA+GGG + chr6_2:6012578-6012597 Msa0907410:CDS 40.0%
ATCTCCCATAAGACTTCCAT+AGG - chr6_2:6012614-6012633 None:intergenic 40.0%
! CGCTTTTCCATATTTCCCAT+AGG - chr6_2:6012638-6012657 None:intergenic 40.0%
!! GAAATATGGAAAAGCGTCGT+TGG + chr6_2:6012642-6012661 Msa0907410:CDS 40.0%
TCAAGTGGAATTCACCATGT+TGG + chr6_2:6012836-6012855 Msa0907410:CDS 40.0%
!! ATTTGTTGTGGTTGCACCTT+TGG + chr6_2:6012925-6012944 Msa0907410:CDS 40.0%
AAGCAAGAGAAAATGAGTGG+TGG - chr6_2:6012112-6012131 None:intergenic 40.0%
TCAACCACAATTATTGGTGC+TGG + chr6_2:6012454-6012473 Msa0907410:CDS 40.0%
AAAAAGTTAGGAATGGTGCC+TGG + chr6_2:6012502-6012521 Msa0907410:CDS 40.0%
AGGACTATGACAATAAGTCC+AGG - chr6_2:6012523-6012542 None:intergenic 40.0%
!!! ATAATCAGGTTTTCTAGGGC+AGG + chr6_2:6012577-6012596 Msa0907410:CDS 40.0%
!!! TAATCAGGTTTTCTAGGGCA+GGG + chr6_2:6012578-6012597 Msa0907410:CDS 40.0%
ATCTCCCATAAGACTTCCAT+AGG - chr6_2:6012614-6012633 None:intergenic 40.0%
! CGCTTTTCCATATTTCCCAT+AGG - chr6_2:6012638-6012657 None:intergenic 40.0%
!! GAAATATGGAAAAGCGTCGT+TGG + chr6_2:6012642-6012661 Msa0907410:CDS 40.0%
TCAAGTGGAATTCACCATGT+TGG + chr6_2:6012836-6012855 Msa0907410:CDS 40.0%
!! ATTTGTTGTGGTTGCACCTT+TGG + chr6_2:6012925-6012944 Msa0907410:CDS 40.0%
GCAGGGAAACTTTCTTCCTA+TGG + chr6_2:6012595-6012614 Msa0907410:CDS 45.0%
! AGTCTTATGGGAGATGCCTA+TGG + chr6_2:6012619-6012638 Msa0907410:CDS 45.0%
GTCTTATGGGAGATGCCTAT+GGG + chr6_2:6012620-6012639 Msa0907410:CDS 45.0%
GGAGATGCCTATGGGAAATA+TGG + chr6_2:6012628-6012647 Msa0907410:CDS 45.0%
GTACATGATCAGACTACCGA+TGG - chr6_2:6012686-6012705 None:intergenic 45.0%
ATCCTTCAAGGACACCAACA+TGG - chr6_2:6012853-6012872 None:intergenic 45.0%
! ATGTTGGTGTCCTTGAAGGA+TGG + chr6_2:6012852-6012871 Msa0907410:CDS 45.0%
!! AAGGATGGTTTGGTGTCCAT+TGG + chr6_2:6012867-6012886 Msa0907410:CDS 45.0%
!! CACCTTTGGTCAGCTTTAAG+CGG + chr6_2:6012939-6012958 Msa0907410:CDS 45.0%
ATCCGCTTAAAGCTGACCAA+AGG - chr6_2:6012944-6012963 None:intergenic 45.0%
!! TTGGTCAGCTTTAAGCGGAT+TGG + chr6_2:6012944-6012963 Msa0907410:CDS 45.0%
GCAGGGAAACTTTCTTCCTA+TGG + chr6_2:6012595-6012614 Msa0907410:CDS 45.0%
! AGTCTTATGGGAGATGCCTA+TGG + chr6_2:6012619-6012638 Msa0907410:CDS 45.0%
GTCTTATGGGAGATGCCTAT+GGG + chr6_2:6012620-6012639 Msa0907410:CDS 45.0%
GGAGATGCCTATGGGAAATA+TGG + chr6_2:6012628-6012647 Msa0907410:CDS 45.0%
GTACATGATCAGACTACCGA+TGG - chr6_2:6012686-6012705 None:intergenic 45.0%
ATCCTTCAAGGACACCAACA+TGG - chr6_2:6012853-6012872 None:intergenic 45.0%
! ATGTTGGTGTCCTTGAAGGA+TGG + chr6_2:6012852-6012871 Msa0907410:CDS 45.0%
!! AAGGATGGTTTGGTGTCCAT+TGG + chr6_2:6012867-6012886 Msa0907410:CDS 45.0%
!! CACCTTTGGTCAGCTTTAAG+CGG + chr6_2:6012939-6012958 Msa0907410:CDS 45.0%
ATCCGCTTAAAGCTGACCAA+AGG - chr6_2:6012944-6012963 None:intergenic 45.0%
!! TTGGTCAGCTTTAAGCGGAT+TGG + chr6_2:6012944-6012963 Msa0907410:CDS 45.0%
! CACCATGTTGGTGTCCTTGA+AGG + chr6_2:6012848-6012867 Msa0907410:CDS 50.0%
GGTGTCCTTGAAGGATGGTT+TGG + chr6_2:6012857-6012876 Msa0907410:CDS 50.0%
GGACACCAAACCATCCTTCA+AGG - chr6_2:6012865-6012884 None:intergenic 50.0%
!! GATGGTTTGGTGTCCATTGG+TGG + chr6_2:6012870-6012889 Msa0907410:CDS 50.0%
!! TTTGGTGTCCATTGGTGGAC+TGG + chr6_2:6012875-6012894 Msa0907410:CDS 50.0%
!! TTGGTGTCCATTGGTGGACT+GGG + chr6_2:6012876-6012895 Msa0907410:CDS 50.0%
! CACCATGTTGGTGTCCTTGA+AGG + chr6_2:6012848-6012867 Msa0907410:CDS 50.0%
GGTGTCCTTGAAGGATGGTT+TGG + chr6_2:6012857-6012876 Msa0907410:CDS 50.0%
GGACACCAAACCATCCTTCA+AGG - chr6_2:6012865-6012884 None:intergenic 50.0%
!! GATGGTTTGGTGTCCATTGG+TGG + chr6_2:6012870-6012889 Msa0907410:CDS 50.0%
!! TTTGGTGTCCATTGGTGGAC+TGG + chr6_2:6012875-6012894 Msa0907410:CDS 50.0%
!! TTGGTGTCCATTGGTGGACT+GGG + chr6_2:6012876-6012895 Msa0907410:CDS 50.0%
ATGTACGCCCAGTCCACCAA+TGG - chr6_2:6012886-6012905 None:intergenic 55.0%
ATGTACGCCCAGTCCACCAA+TGG - chr6_2:6012886-6012905 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 6012071 6012982 6012071 ID=Msa0907410;Name=Msa0907410
chr6_2 mRNA 6012071 6012982 6012071 ID=Msa0907410-mRNA-1;Parent=Msa0907410;Name=Msa0907410-mRNA-1;_AED=0.02;_eAED=0.02;_QI=221|1|1|1|1|1|2|9|195
chr6_2 exon 6012071 6012718 6012071 ID=Msa0907410-mRNA-1:exon:1915;Parent=Msa0907410-mRNA-1
chr6_2 exon 6012813 6012982 6012813 ID=Msa0907410-mRNA-1:exon:1916;Parent=Msa0907410-mRNA-1
chr6_2 five_prime_UTR 6012071 6012291 6012071 ID=Msa0907410-mRNA-1:five_prime_utr;Parent=Msa0907410-mRNA-1
chr6_2 CDS 6012292 6012718 6012292 ID=Msa0907410-mRNA-1:cds;Parent=Msa0907410-mRNA-1
chr6_2 CDS 6012813 6012973 6012813 ID=Msa0907410-mRNA-1:cds;Parent=Msa0907410-mRNA-1
chr6_2 three_prime_UTR 6012974 6012982 6012974 ID=Msa0907410-mRNA-1:three_prime_utr;Parent=Msa0907410-mRNA-1
Gene Sequence

>Msa0907410

ATGACTAGTGGAATTCAAGTACCTAATGCTGAGAAGAAAAAATCAAGAAAGAACAAGACAATTATCGATGTAAATGCACCTTTGTTACCTAAGACACAAGAAAGTGATGTTAAGTTTGATGAATTTAATGGAGCTTCATTTTTTGGTGCTGTTTTCAATTTATCAACCACAATTATTGGTGCTGGAATTATGGGATTGCCTGTATGTGTGAAAAAGTTAGGAATGGTGCCTGGACTTATTGTCATAGTCCTAACAGCTTTATTGACAGAGAAGTCAATTGATTTCATAATCAGGTTTTCTAGGGCAGGGAAACTTTCTTCCTATGGAAGTCTTATGGGAGATGCCTATGGGAAATATGGAAAAGCGTCGTTGGAGATATGTGTTTTAAGTACCATCGGTAGTCTGATCATGTACATGATCATTATTGGTGATGTGATTTCTGGAACAACTTCAAGTGGAATTCACCATGTTGGTGTCCTTGAAGGATGGTTTGGTGTCCATTGGTGGACTGGGCGTACATTTGTTCTTACTTTCGCAACATTTGTTGTGGTTGCACCTTTGGTCAGCTTTAAGCGGATTGGTGAGTGA
Protein sequence

>Msa0907410

MTSGIQVPNAEKKKSRKNKTIIDVNAPLLPKTQESDVKFDEFNGASFFGAVFNLSTTIIGAGIMGLPVCVKKLGMVPGLIVIVLTALLTEKSIDFIIRFSRAGKLSSYGSLMGDAYGKYGKASLEICVLSTIGSLIMYMIIIGDVISGTTSSGIHHVGVLEGWFGVHWWTGRTFVLTFATFVVVAPLVSFKRIGE*