AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1404720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1404720 MtrunA17_Chr3g0127401 98.961 385 4 0 1 385 1 385 0.0 783
Msa1404720 MtrunA17_Chr3g0127431 81.921 354 63 1 5 358 8 360 0.0 595
Msa1404720 MtrunA17_Chr1g0195741 51.211 289 133 3 47 328 905 1192 2.89e-91 298
Msa1404720 MtrunA17_Chr1g0195731 51.211 289 133 3 47 328 901 1188 7.81e-91 296
Msa1404720 MtrunA17_Chr8g0387641 55.378 251 110 2 63 312 503 752 4.71e-90 289
Msa1404720 MtrunA17_Chr3g0116131 52.290 262 124 1 43 303 864 1125 4.34e-87 286
Msa1404720 MtrunA17_Chr4g0038101 45.062 324 164 4 41 359 690 1004 1.43e-85 280
Msa1404720 MtrunA17_Chr5g0397121 53.600 250 114 2 63 311 495 743 1.94e-85 276
Msa1404720 MtrunA17_Chr6g0462581 53.629 248 112 3 63 309 482 727 4.95e-82 267
Msa1404720 MtrunA17_Chr1g0202371 43.505 331 155 4 63 364 379 706 1.24e-79 258
Msa1404720 MtrunA17_Chr1g0202381 43.675 332 154 5 63 364 450 778 1.32e-77 254
Msa1404720 MtrunA17_Chr1g0204031 51.613 248 118 2 63 309 539 785 7.40e-76 251
Msa1404720 MtrunA17_Chr7g0246111 41.924 291 155 6 40 318 162 450 2.32e-62 208
Msa1404720 MtrunA17_Chr6g0459561 41.852 270 148 6 80 344 381 646 1.12e-56 196
Msa1404720 MtrunA17_Chr4g0052271 39.350 277 152 7 80 345 118 389 1.80e-55 187
Msa1404720 MtrunA17_Chr6g0459541 38.667 300 140 9 80 344 41 331 1.62e-52 178
Msa1404720 MtrunA17_Chr4g0004121 37.736 265 150 5 81 332 242 504 2.59e-50 176
Msa1404720 MtrunA17_Chr2g0321241 40.435 230 130 5 80 306 131 356 4.00e-49 171
Msa1404720 MtrunA17_Chr4g0026631 40.435 230 130 5 80 306 126 351 7.21e-48 168
Msa1404720 MtrunA17_Chr6g0459551 36.545 301 145 10 80 344 101 391 3.86e-46 163
Msa1404720 MtrunA17_Chr3g0145011 38.525 244 142 4 67 305 125 365 4.17e-46 162
Msa1404720 MtrunA17_Chr3g0141901 38.115 244 143 4 67 305 122 362 1.38e-45 161
Msa1404720 MtrunA17_Chr1g0180791 40.000 235 131 5 77 306 200 429 3.24e-45 166
Msa1404720 MtrunA17_Chr1g0180791 35.547 256 149 6 80 325 477 726 2.09e-43 161
Msa1404720 MtrunA17_Chr7g0264521 39.394 231 131 4 80 306 205 430 2.32e-44 164
Msa1404720 MtrunA17_Chr7g0264521 35.606 264 153 7 80 333 478 734 8.90e-44 162
Msa1404720 MtrunA17_Chr2g0327121 36.255 251 146 5 80 322 479 723 3.27e-44 163
Msa1404720 MtrunA17_Chr2g0327121 39.301 229 134 3 80 306 206 431 6.76e-43 159
Msa1404720 MtrunA17_Chr4g0050561 39.316 234 131 5 80 306 155 384 7.29e-43 154
Msa1404720 MtrunA17_Chr8g0345461 39.056 233 130 6 80 305 164 391 4.52e-42 152
Msa1404720 MtrunA17_Chr6g0459531 34.926 272 137 7 80 344 66 304 2.37e-40 145
Msa1404720 MtrunA17_Chr1g0200081 38.627 233 130 7 80 305 174 400 1.94e-39 145
Msa1404720 MtrunA17_Chr1g0192151 37.339 233 130 7 82 305 168 393 1.42e-38 143
Msa1404720 MtrunA17_Chr4g0014731 37.339 233 130 7 82 305 169 394 2.12e-38 142
Msa1404720 MtrunA17_Chr7g0262801 37.391 230 134 5 83 306 189 414 4.62e-37 139
Msa1404720 MtrunA17_Chr7g0255901 33.803 284 159 10 36 311 611 873 7.23e-37 142
Msa1404720 MtrunA17_Chr1g0182711 36.957 230 135 5 83 306 190 415 8.46e-37 138
Msa1404720 MtrunA17_Chr3g0108321 44.324 185 93 5 80 258 158 338 2.07e-36 136
Msa1404720 MtrunA17_Chr7g0255721 34.335 233 140 6 81 306 685 911 1.09e-35 139
Msa1404720 MtrunA17_Chr7g0255721 32.889 225 123 7 120 326 422 636 7.50e-27 112
Msa1404720 MtrunA17_Chr7g0255641 33.906 233 141 6 81 306 658 884 8.78e-35 136
Msa1404720 MtrunA17_Chr7g0255641 30.800 250 158 8 86 331 401 639 1.29e-23 103
Msa1404720 MtrunA17_Chr2g0277831 35.685 241 144 6 83 317 245 480 1.10e-34 135
Msa1404720 MtrunA17_Chr2g0277831 30.043 233 156 4 80 308 532 761 2.22e-33 132
Msa1404720 MtrunA17_Chr7g0260601 37.815 238 126 8 81 305 240 468 1.95e-34 134
Msa1404720 MtrunA17_Chr4g0033451 37.295 244 138 8 74 306 371 610 2.01e-34 135
Msa1404720 MtrunA17_Chr7g0217421 37.768 233 130 6 81 305 39 264 7.89e-34 129
Msa1404720 MtrunA17_Chr6g0456351 36.752 234 140 4 76 305 312 541 5.98e-33 130
Msa1404720 MtrunA17_Chr4g0052411 32.573 307 177 9 78 368 226 518 6.81e-33 130
Msa1404720 MtrunA17_Chr7g0248361 38.494 239 123 10 81 305 192 420 7.08e-33 130
Msa1404720 MtrunA17_Chr2g0289231 31.615 291 177 8 80 357 296 577 9.87e-33 129
Msa1404720 MtrunA17_Chr7g0255651 35.021 237 150 3 81 314 282 517 1.03e-32 129
Msa1404720 MtrunA17_Chr7g0255651 33.790 219 131 7 94 305 30 241 1.07e-21 97.1
Msa1404720 MtrunA17_Chr4g0043381 32.342 269 173 6 83 348 839 1101 1.75e-32 129
Msa1404720 MtrunA17_Chr3g0143721 33.119 311 174 13 81 379 249 537 2.13e-32 129
Msa1404720 MtrunA17_Chr5g0432631 33.681 288 170 8 80 363 228 498 4.92e-32 128
Msa1404720 MtrunA17_Chr3g0135761 32.827 329 178 10 44 363 197 491 5.70e-32 127
Msa1404720 MtrunA17_Chr4g0031821 36.402 239 128 9 81 305 320 548 7.59e-32 127
Msa1404720 MtrunA17_Chr6g0476861 37.238 239 126 9 81 305 197 425 1.33e-31 126
Msa1404720 MtrunA17_Chr2g0297281 35.622 233 135 6 81 305 286 511 1.64e-31 126
Msa1404720 MtrunA17_Chr3g0135721 33.449 287 170 8 81 363 224 493 3.62e-31 125
Msa1404720 MtrunA17_Chr2g0316851 32.075 265 158 8 83 330 596 855 8.27e-31 124
Msa1404720 MtrunA17_Chr3g0086411 29.719 249 152 5 80 308 214 459 4.86e-30 120
Msa1404720 MtrunA17_Chr3g0086411 29.936 157 100 4 170 317 7 162 2.26e-12 68.2
Msa1404720 MtrunA17_Chr3g0094871 34.894 235 136 8 81 305 11 238 6.80e-30 119
Msa1404720 MtrunA17_Chr7g0255691 34.127 252 151 5 81 320 286 534 2.39e-29 119
Msa1404720 MtrunA17_Chr7g0255691 36.726 226 127 8 84 299 20 239 1.15e-27 114
Msa1404720 MtrunA17_Chr1g0158881 33.681 288 163 10 83 363 331 597 3.38e-29 119
Msa1404720 MtrunA17_Chr2g0327231 39.286 168 90 4 80 241 345 506 3.85e-29 118
Msa1404720 MtrunA17_Chr2g0327231 39.362 94 48 3 80 171 152 238 2.14e-11 65.5
Msa1404720 MtrunA17_Chr5g0429571 36.402 239 130 8 81 306 313 542 9.76e-29 118
Msa1404720 MtrunA17_Chr3g0104211 36.820 239 129 8 81 306 304 533 1.57e-28 117
Msa1404720 MtrunA17_Chr8g0362771 31.959 291 172 10 80 363 236 507 2.04e-28 117
Msa1404720 MtrunA17_Chr8g0388371 34.310 239 140 5 81 306 404 638 2.40e-28 117
Msa1404720 MtrunA17_Chr2g0331161 30.992 242 140 7 79 306 413 641 4.56e-28 116
Msa1404720 MtrunA17_Chr3g0086401 32.922 243 136 7 80 299 384 622 5.75e-28 115
Msa1404720 MtrunA17_Chr3g0086401 30.233 215 135 6 104 308 116 325 1.61e-20 93.6
Msa1404720 MtrunA17_Chr3g0129971 35.246 244 133 9 81 308 296 530 4.11e-27 113
Msa1404720 MtrunA17_Chr5g0432641 32.154 311 181 11 62 363 171 460 1.07e-26 112
Msa1404720 MtrunA17_Chr3g0135781 38.788 165 93 4 80 242 54 212 1.31e-22 94.7
Msa1404720 MtrunA17_Chr8g0357301 33.333 201 111 7 120 305 507 699 3.93e-22 98.6
Msa1404720 MtrunA17_Chr1g0190401 27.178 287 152 12 13 262 594 860 1.79e-18 87.8
Msa1404720 MtrunA17_Chr4g0047411 31.280 211 116 8 120 308 214 417 1.34e-17 84.7
Msa1404720 MtrunA17_Chr5g0404291 36.735 147 80 6 117 258 386 524 2.41e-15 77.8
Msa1404720 MtrunA17_Chr1g0168321 37.086 151 77 7 167 305 211 355 4.09e-15 76.6
Msa1404720 MtrunA17_Chr6g0450161 32.911 158 87 4 117 266 361 507 7.98e-15 76.3
Msa1404720 MtrunA17_Chr4g0062081 48.750 80 35 3 86 162 12 88 3.07e-14 68.2
Msa1404720 MtrunA17_Chr4g0039781 34.810 158 84 6 117 266 367 513 3.69e-14 73.9
Msa1404720 MtrunA17_Chr1g0204051 35.526 76 48 1 210 285 1 75 3.38e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1404720 AT4G27680.1 75.452 387 93 1 1 385 1 387 0.0 605
Msa1404720 AT5G53540.1 71.503 386 107 2 3 385 6 391 0.0 569
Msa1404720 AT4G02480.1 54.373 263 118 2 47 308 927 1188 2.75e-91 298
Msa1404720 AT1G02890.1 52.593 270 127 1 45 313 905 1174 2.87e-91 298
Msa1404720 AT4G24860.4 53.025 281 126 2 59 333 768 1048 4.62e-90 293
Msa1404720 AT1G64110.1 54.980 251 111 2 63 312 495 744 7.16e-90 288
Msa1404720 AT1G64110.5 54.980 251 111 2 63 312 498 747 7.26e-90 288
Msa1404720 AT1G64110.3 54.980 251 111 2 63 312 498 747 7.26e-90 288
Msa1404720 AT1G64110.2 54.980 251 111 2 63 312 500 749 7.30e-90 288
Msa1404720 AT1G64110.4 54.980 251 111 2 63 312 500 749 7.30e-90 288
Msa1404720 AT4G24860.1 53.025 281 126 2 59 333 795 1075 9.43e-90 293
Msa1404720 AT4G24860.3 53.025 281 126 2 59 333 793 1073 1.06e-89 293
Msa1404720 AT4G24860.2 53.025 281 126 2 59 333 791 1071 1.07e-89 293
Msa1404720 AT3G19740.1 45.427 328 172 4 39 359 657 984 1.30e-85 280
Msa1404720 AT1G50140.2 51.953 256 122 1 60 314 668 923 5.41e-85 278
Msa1404720 AT1G50140.5 51.953 256 122 1 60 314 668 923 5.41e-85 278
Msa1404720 AT1G50140.3 51.953 256 122 1 60 314 690 945 7.29e-85 278
Msa1404720 AT1G50140.1 51.953 256 122 1 60 314 690 945 7.29e-85 278
Msa1404720 AT1G50140.4 51.953 256 122 1 60 314 690 945 7.29e-85 278
Msa1404720 AT5G52882.1 51.894 264 124 3 59 321 492 753 5.52e-84 273
Msa1404720 AT4G28000.3 49.825 285 133 4 63 346 499 774 1.48e-83 271
Msa1404720 AT4G28000.2 49.825 285 133 4 63 346 499 774 3.52e-83 271
Msa1404720 AT4G28000.1 49.825 285 133 4 63 346 497 772 3.59e-83 270
Msa1404720 AT1G62130.2 47.445 274 130 3 39 312 704 963 1.84e-72 244
Msa1404720 AT1G62130.1 47.445 274 130 3 39 312 711 970 2.06e-72 244
Msa1404720 AT1G02890.2 45.926 270 117 2 45 313 905 1146 5.94e-71 241
Msa1404720 AT2G45500.4 44.488 254 131 5 63 310 59 308 8.43e-65 211
Msa1404720 AT2G45500.3 44.488 254 131 5 63 310 59 308 8.43e-65 211
Msa1404720 AT2G45500.2 44.488 254 131 5 63 310 192 441 3.27e-63 210
Msa1404720 AT2G45500.1 44.488 254 131 5 63 310 196 445 3.47e-63 210
Msa1404720 AT2G45500.5 44.488 254 131 5 63 310 202 451 6.80e-63 209
Msa1404720 AT2G34560.1 36.741 313 173 8 38 339 66 364 9.34e-56 188
Msa1404720 AT3G27120.1 44.828 232 122 4 80 308 399 627 1.34e-55 194
Msa1404720 AT2G34560.2 36.741 313 173 8 38 339 75 373 1.58e-55 187
Msa1404720 AT1G80350.1 37.358 265 151 5 81 332 236 498 8.25e-50 176
Msa1404720 AT5G43010.1 38.934 244 141 4 67 305 122 362 2.99e-47 166
Msa1404720 AT1G45000.1 38.934 244 141 4 67 305 122 362 4.13e-47 166
Msa1404720 AT2G27600.1 34.589 292 154 7 80 338 128 415 1.26e-46 165
Msa1404720 AT3G09840.1 39.827 231 130 4 80 306 203 428 3.89e-45 166
Msa1404720 AT3G09840.1 35.019 257 150 6 80 325 476 726 2.12e-42 158
Msa1404720 AT5G03340.1 39.394 231 131 4 80 306 203 428 1.43e-44 164
Msa1404720 AT5G03340.1 36.905 252 141 6 80 319 476 721 1.73e-44 164
Msa1404720 AT3G53230.1 38.961 231 132 4 80 306 204 429 8.95e-44 162
Msa1404720 AT3G53230.1 35.918 245 143 5 80 316 477 715 2.23e-42 158
Msa1404720 AT5G19990.1 39.316 234 131 5 80 306 157 386 1.41e-42 154
Msa1404720 AT5G19990.3 39.316 234 131 5 80 306 157 386 1.41e-42 154
Msa1404720 AT5G19990.2 39.316 234 131 5 80 306 99 328 1.70e-42 152
Msa1404720 AT5G20000.1 39.316 234 131 5 80 306 157 386 1.83e-42 154
Msa1404720 AT1G53750.1 39.056 233 130 6 80 305 164 391 8.77e-42 152
Msa1404720 AT5G58290.1 37.768 233 135 5 80 306 151 379 4.47e-40 147
Msa1404720 AT3G05530.1 37.339 233 130 7 82 305 169 394 1.26e-38 143
Msa1404720 AT1G53780.3 38.197 233 130 6 80 304 335 561 1.40e-38 146
Msa1404720 AT1G53780.1 38.197 233 130 6 80 304 336 562 1.48e-38 146
Msa1404720 AT1G53780.4 38.197 233 130 6 80 304 336 562 1.48e-38 146
Msa1404720 AT1G53780.2 38.197 233 130 6 80 304 357 583 1.77e-38 146
Msa1404720 AT3G56690.1 35.714 238 142 6 81 312 721 953 1.36e-37 145
Msa1404720 AT3G56690.1 29.582 311 203 6 2 308 310 608 5.54e-35 137
Msa1404720 AT1G09100.1 36.910 233 131 7 82 305 168 393 2.56e-37 140
Msa1404720 AT1G03000.1 34.000 250 156 7 76 319 650 896 1.74e-36 141
Msa1404720 AT4G29040.1 36.522 230 136 5 83 306 187 412 3.92e-36 137
Msa1404720 AT2G20140.1 36.522 230 136 5 83 306 187 412 9.65e-36 136
Msa1404720 AT1G05910.1 36.864 236 136 7 80 306 377 608 7.25e-35 137
Msa1404720 AT5G15250.1 37.712 236 126 8 81 305 221 446 6.15e-34 133
Msa1404720 AT1G06430.1 37.288 236 133 6 78 305 214 442 1.52e-33 132
Msa1404720 AT1G06430.3 37.288 236 133 6 78 305 214 442 1.52e-33 132
Msa1404720 AT1G06430.2 37.288 236 133 6 78 305 214 442 1.52e-33 132
Msa1404720 AT3G01610.2 33.610 241 149 5 80 315 524 758 1.70e-33 132
Msa1404720 AT3G01610.2 35.223 247 144 6 83 317 232 474 7.93e-33 130
Msa1404720 AT2G30950.4 37.339 233 131 6 81 305 228 453 1.87e-33 132
Msa1404720 AT2G30950.1 37.339 233 131 6 81 305 224 449 1.89e-33 132
Msa1404720 AT2G30950.2 37.339 233 131 6 81 305 224 449 1.89e-33 132
Msa1404720 AT2G30950.3 37.339 233 131 6 81 305 224 449 1.89e-33 132
Msa1404720 AT3G01610.1 33.610 241 149 5 80 315 524 758 1.90e-33 132
Msa1404720 AT3G01610.1 35.223 247 144 6 83 317 232 474 8.24e-33 130
Msa1404720 AT5G42270.1 33.548 310 174 12 81 379 247 535 2.50e-33 132
Msa1404720 AT1G50250.1 33.548 310 174 12 81 379 259 547 5.07e-33 131
Msa1404720 AT5G08470.3 33.086 269 171 6 83 348 834 1096 6.48e-33 131
Msa1404720 AT5G08470.1 33.086 269 171 6 83 348 843 1105 7.49e-33 130
Msa1404720 AT2G29080.1 37.553 237 127 8 81 305 319 546 4.86e-32 128
Msa1404720 AT1G07510.1 36.820 239 127 9 81 305 324 552 1.07e-31 127
Msa1404720 AT3G02450.1 36.364 231 135 6 81 305 331 555 1.48e-31 126
Msa1404720 AT2G26140.1 33.798 287 169 8 81 363 224 493 1.84e-31 126
Msa1404720 AT2G03670.2 35.426 223 131 7 86 299 24 242 9.12e-31 122
Msa1404720 AT2G03670.2 36.842 114 71 1 81 194 283 395 1.74e-12 68.9
Msa1404720 AT5G58870.1 36.626 243 132 8 77 306 322 555 1.27e-30 124
Msa1404720 AT5G15250.2 34.483 261 123 9 81 305 221 469 1.79e-30 122
Msa1404720 AT4G04180.1 31.174 247 149 6 80 314 315 552 3.05e-30 122
Msa1404720 AT4G04180.2 31.174 247 149 6 80 314 310 547 3.25e-30 122
Msa1404720 AT2G03670.1 35.426 223 131 7 86 299 24 242 4.24e-30 122
Msa1404720 AT2G03670.1 32.174 230 151 3 81 306 283 511 2.87e-26 110
Msa1404720 AT5G53170.1 32.653 294 176 9 74 363 352 627 1.70e-29 120
Msa1404720 AT3G47060.1 34.959 246 138 8 81 313 322 558 7.75e-29 119
Msa1404720 AT4G23940.1 34.959 246 136 7 81 310 427 664 1.55e-28 118
Msa1404720 AT3G15120.1 31.667 240 147 7 83 308 718 954 3.16e-28 117
Msa1404720 AT3G15120.2 31.667 240 147 7 83 308 728 964 3.19e-28 117
Msa1404720 AT3G16290.1 30.992 242 140 7 79 306 405 633 1.10e-26 112
Msa1404720 AT1G45000.2 38.562 153 90 2 67 216 122 273 3.12e-26 108
Msa1404720 AT1G79560.3 35.644 202 107 7 120 306 527 720 8.63e-26 110
Msa1404720 AT1G79560.1 35.644 202 107 7 120 306 527 720 8.87e-26 110
Msa1404720 AT1G79560.2 35.644 202 107 7 120 306 527 720 9.40e-26 110
Msa1404720 AT5G64580.1 34.568 243 136 9 81 308 313 547 1.35e-25 109
Msa1404720 AT3G04340.1 31.658 199 117 8 73 262 776 964 6.04e-17 83.6
Msa1404720 AT5G08470.2 34.161 161 100 5 83 242 843 998 1.28e-16 82.4
Msa1404720 AT4G04910.1 30.806 211 117 8 120 308 251 454 1.31e-16 82.0
Msa1404720 AT5G16930.1 34.969 163 77 7 118 267 397 543 1.85e-14 75.5
Msa1404720 AT2G18330.1 32.877 146 87 4 117 258 383 521 2.38e-14 75.1
Msa1404720 AT3G03060.1 32.075 159 89 4 117 267 384 531 2.73e-14 74.7
Msa1404720 AT4G36580.1 32.877 146 87 4 117 258 380 518 1.87e-13 72.4

Find 135 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCTCAAGCCTTTGAAAT+TGG 0.177781 tig0023079:-67271 Msa1404720:CDS
ATATATCAGCCCTCTCTTTC+CGG 0.226986 tig0023079:+67239 None:intergenic
CAGGGAATTATCTAAGATTA+TGG 0.229656 tig0023079:-66582 Msa1404720:CDS
TATATTGAAGGTTATCTTAA+AGG 0.231299 tig0023079:-67221 Msa1404720:CDS
CAACACACTTACCAAGCTTT+TGG 0.251388 tig0023079:+70632 None:intergenic
ACCTTTGTCGCAGGCAGATT+TGG 0.252995 tig0023079:-66720 Msa1404720:CDS
AGTGTATAATAATACAAGTT+TGG 0.261791 tig0023079:+66447 None:intergenic
CTAGGGCGGCGCTAAGTTAC+TGG 0.265505 tig0023079:-71542 Msa1404720:CDS
ATGTAGAATTTGACTCTATT+GGG 0.269048 tig0023079:-70882 Msa1404720:CDS
CCCCAAACCATTTGCTCATC+AGG 0.271211 tig0023079:+70659 None:intergenic
ACCTGATGAGCAAATGGTTT+GGG 0.311167 tig0023079:-70660 Msa1404720:CDS
TTATGCAGTATTTCTCTAAT+AGG 0.315812 tig0023079:+67094 None:intergenic
AAGTAATTGCGGTTGCAATC+TGG 0.316109 tig0023079:+66488 None:intergenic
GATGTAGAATTTGACTCTAT+TGG 0.317232 tig0023079:-70883 Msa1404720:CDS
AAACTGAGTTCATGGCTCTA+TGG 0.320401 tig0023079:-67504 Msa1404720:CDS
CTCAGGTTGAAGCTGTAATC+AGG 0.341431 tig0023079:-66601 Msa1404720:CDS
ACATCAAGAACGTCGTTTCA+TGG 0.355841 tig0023079:-66638 Msa1404720:CDS
AAACATGAAAACTGAGTTCA+TGG 0.362291 tig0023079:-67512 Msa1404720:CDS
TACTTCATCGATGAATATAA+TGG 0.362913 tig0023079:+67582 None:intergenic
AATGGGTACCTCATAGGAAT+TGG 0.365618 tig0023079:+71410 None:intergenic
TTCTTCGATGATTCACGGTT+CGG 0.366779 tig0023079:+71489 None:intergenic
AAAACAAGTCTGGTCGTTGC+AGG 0.370845 tig0023079:+70812 None:intergenic
TCTTCGATGATTCACGGTTC+GGG 0.377468 tig0023079:+71490 None:intergenic
AAAGCTATTGCCAAGGAGTC+TGG 0.379922 tig0023079:-70712 Msa1404720:CDS
TTGTATGGACCTCCTGGCAC+TGG 0.386661 tig0023079:-70751 Msa1404720:CDS
ACGTCGTTTCATGGCGAGTC+AGG 0.388975 tig0023079:-66629 Msa1404720:CDS
TAGGAATTGGTTTGAATAAG+AGG 0.390998 tig0023079:+71423 None:intergenic
CAAACTTCTTGGACCACAAA+AGG 0.392804 tig0023079:-70782 Msa1404720:CDS
TGTAGAGAGTGCTCGGGTTA+TGG 0.397237 tig0023079:-67347 Msa1404720:intron
TTTAATCCTGAGCATCTACT+TGG 0.407390 tig0023079:+66546 None:intergenic
ATATTGAAGGTTATCTTAAA+GGG 0.410430 tig0023079:-67220 Msa1404720:CDS
TGCAACCGCAATTACTTCCT+TGG 0.410829 tig0023079:-66482 Msa1404720:three_prime_UTR
TCGAAATTTGAAGTTAAAGT+TGG 0.411898 tig0023079:+71642 None:intergenic
CAGACCACAAATTCGGTAGT+TGG 0.415815 tig0023079:-71682 Msa1404720:five_prime_UTR
GTATCCAACTACCGAATTTG+TGG 0.420668 tig0023079:+71678 None:intergenic
GTGTATAATAATACAAGTTT+GGG 0.426349 tig0023079:+66448 None:intergenic
AACCTGATGAGCAAATGGTT+TGG 0.428222 tig0023079:-70661 Msa1404720:CDS
CACGGTTCGGGTCGAGATAA+CGG 0.430729 tig0023079:+71502 None:intergenic
AGGGAATTATCTAAGATTAT+GGG 0.432152 tig0023079:-66581 Msa1404720:CDS
AGTAATTGCGGTTGCAATCT+GGG 0.435060 tig0023079:+66489 None:intergenic
AAACTTCTTGGACCACAAAA+GGG 0.435723 tig0023079:-70781 Msa1404720:CDS
TTGTTCTTTCGTTCGTTCAA+AGG 0.441863 tig0023079:-71619 Msa1404720:five_prime_UTR
GAGCCTTCTTCGATGATTCA+CGG 0.446293 tig0023079:+71484 None:intergenic
AATGCAGTATTATCTGTTGC+AGG 0.449995 tig0023079:-66243 Msa1404720:three_prime_UTR
TCCAAATCTGCCTGCGACAA+AGG 0.458633 tig0023079:+66719 None:intergenic
CTTTATTTATGATTGTTGTT+CGG 0.460836 tig0023079:-66339 Msa1404720:three_prime_UTR
ATGTCTTCCGCGAAGTAGAA+AGG 0.461125 tig0023079:+66690 None:intergenic
GTTCTGTTGTATGGACCTCC+TGG 0.464854 tig0023079:-70757 Msa1404720:CDS
TTCGCGTAAGTTTCTGAGGT+GGG 0.468999 tig0023079:+71785 None:intergenic
CATGGTACAATATCAAAAGT+AGG 0.470098 tig0023079:+66291 None:intergenic
ATAGATTTCAGTTATATAGC+TGG 0.470990 tig0023079:-67178 Msa1404720:CDS
TCAGCCCTCTCTTTCCGGTC+TGG 0.471982 tig0023079:+67244 None:intergenic
TACTGCATAATGAGAAGAAA+GGG 0.472605 tig0023079:-67081 Msa1404720:CDS
TCACATCCAAGTAGATGCTC+AGG 0.475230 tig0023079:-66552 Msa1404720:CDS
TGGCGAGTCAGGTGATTCTC+AGG 0.479528 tig0023079:-66618 Msa1404720:CDS
AGTGGCTGCCGTATTTAGCT+TGG 0.481021 tig0023079:-67623 Msa1404720:CDS
TCTATTTGATCTTTGCAAGA+AGG 0.483151 tig0023079:-67128 Msa1404720:CDS
TATCAAACCTGATGAGCAAA+TGG 0.483375 tig0023079:-70666 Msa1404720:CDS
GTTGTTGTGTAGAGAGTGCT+CGG 0.484415 tig0023079:-67354 Msa1404720:intron
CCCTAGCCGCGTATAACAAC+AGG 0.485855 tig0023079:+71559 None:intergenic
GAAAACTGCTCCAGACTCCT+TGG 0.486780 tig0023079:+70702 None:intergenic
AATTCTACATCGATGTGGTC+AGG 0.489405 tig0023079:+70895 None:intergenic
TATTCAAACCAATTCCTATG+AGG 0.495023 tig0023079:-71418 Msa1404720:intron
TGCATGAAATTCTGAGCTAA+AGG 0.497231 tig0023079:+66402 None:intergenic
TCTGCCTGCGACAAAGGTCT+AGG 0.503149 tig0023079:+66725 None:intergenic
ATACTGCATAATGAGAAGAA+AGG 0.503244 tig0023079:-67082 Msa1404720:CDS
AAAGAGATTGCTAAACGTCT+TGG 0.508962 tig0023079:-71450 Msa1404720:CDS
TTTGGGGATGCCCAAAAGCT+TGG 0.509153 tig0023079:-70643 Msa1404720:intron
TTGCCATGCGAAAACAAGTC+TGG 0.509217 tig0023079:+70802 None:intergenic
ATGGTACAATATCAAAAGTA+GGG 0.510191 tig0023079:+66292 None:intergenic
GGCGCTAAGTTACTGGGTAT+TGG 0.511795 tig0023079:-71535 Msa1404720:CDS
AACTGAGTTCATGGCTCTAT+GGG 0.515199 tig0023079:-67503 Msa1404720:CDS
TACAATATCAAAAGTAGGGC+GGG 0.522672 tig0023079:+66296 None:intergenic
TTTCGTTCGTTCAAAGGACA+TGG 0.522908 tig0023079:-71613 Msa1404720:exon
AAGTTACTGGGTATTGGTCA+CGG 0.526475 tig0023079:-71529 Msa1404720:CDS
GGGAATTATCTAAGATTATG+GGG 0.530906 tig0023079:-66580 Msa1404720:CDS
TATATAGCTGGTTTATGCAA+GGG 0.532236 tig0023079:-67166 Msa1404720:CDS
TTTATGAGCCAAGCTAAATA+CGG 0.532998 tig0023079:+67615 None:intergenic
AGAGAGGGCTGATATATTGA+AGG 0.534415 tig0023079:-67233 Msa1404720:CDS
TTCTGAGCTAAAGGCAACAC+TGG 0.534510 tig0023079:+66411 None:intergenic
GAACCGTGAATCATCGAAGA+AGG 0.537058 tig0023079:-71487 Msa1404720:CDS
TCCTTTCGCGTAAGTTTCTG+AGG 0.538081 tig0023079:+71781 None:intergenic
TTCTACTTCGCGGAAGACAT+CGG 0.539207 tig0023079:-66687 Msa1404720:CDS
AATTTGACTGCATCATATCA+TGG 0.539356 tig0023079:+66273 None:intergenic
GGTTTATGCAAGGGTTACAC+TGG 0.540877 tig0023079:-67157 Msa1404720:CDS
TGTCTTCCGCGAAGTAGAAA+GGG 0.540884 tig0023079:+66691 None:intergenic
GTCAGGATTTATAACATCAC+AGG 0.543896 tig0023079:+70912 None:intergenic
AGTTACTGGGTATTGGTCAC+GGG 0.546408 tig0023079:-71528 Msa1404720:CDS
TTGAAATTGGATATCCAGAC+CGG 0.547953 tig0023079:-67258 Msa1404720:CDS
TTATATAGCTGGTTTATGCA+AGG 0.548540 tig0023079:-67167 Msa1404720:CDS
GTCTGGATATCCAATTTCAA+AGG 0.556914 tig0023079:+67261 None:intergenic
TAAATAAAGTCTAGTATACA+TGG 0.557154 tig0023079:+66353 None:intergenic
TGTAGAATTTGACTCTATTG+GGG 0.558850 tig0023079:-70881 Msa1404720:CDS
ATTGCTTCATCAAGTTCTGA+AGG 0.564553 tig0023079:+67304 None:intergenic
CCTGTTGTTATACGCGGCTA+GGG 0.564962 tig0023079:-71559 Msa1404720:CDS
GGTTATCTTAAAGGGCGAGA+AGG 0.568954 tig0023079:-67212 Msa1404720:CDS
ACCTGTTGTTATACGCGGCT+AGG 0.569819 tig0023079:-71560 Msa1404720:CDS
TTTCGCGTAAGTTTCTGAGG+TGG 0.571830 tig0023079:+71784 None:intergenic
AAACAAGTCTGGTCGTTGCA+GGG 0.572120 tig0023079:+70813 None:intergenic
GAGTTCATGGCTCTATGGGA+TGG 0.573516 tig0023079:-67499 Msa1404720:CDS
GTCGCAGGCAGATTTGGAGA+AGG 0.576617 tig0023079:-66714 Msa1404720:CDS
TATCCAATTTCAAAGGCTTG+AGG 0.578118 tig0023079:+67268 None:intergenic
AACTTCTTGGACCACAAAAG+GGG 0.581082 tig0023079:-70780 Msa1404720:CDS
TAGGGCGGCGCTAAGTTACT+GGG 0.582080 tig0023079:-71541 Msa1404720:CDS
TTCGTTCGTTCAAAGGACAT+GGG 0.588484 tig0023079:-71612 Msa1404720:exon
TCATCGATGAATATAATGGA+TGG 0.591454 tig0023079:+67586 None:intergenic
GGAACCTAGACCTTTGTCGC+AGG 0.591455 tig0023079:-66729 Msa1404720:CDS
TCAGGTTGAAGCTGTAATCA+GGG 0.595334 tig0023079:-66600 Msa1404720:CDS
ACCTCAGAAACTTACGCGAA+AGG 0.600996 tig0023079:-71782 Msa1404720:five_prime_UTR
AACAAGTCTGGTCGTTGCAG+GGG 0.601495 tig0023079:+70814 None:intergenic
TGTATGGACCTCCTGGCACT+GGG 0.603811 tig0023079:-70750 Msa1404720:CDS
AGAAGGCCCTTTCTACTTCG+CGG 0.604409 tig0023079:-66697 Msa1404720:CDS
TTGTGGTCTGCGAAAATCGA+GGG 0.604495 tig0023079:+71695 None:intergenic
GATATCCAGACCGGAAAGAG+AGG 0.613846 tig0023079:-67249 Msa1404720:CDS
AATAACCAAGGAAGTAATTG+CGG 0.616781 tig0023079:+66477 None:intergenic
TAATATTCAATCAATACTTG+CGG 0.621882 tig0023079:+71742 None:intergenic
AACTTGATGAAGCAATACTT+CGG 0.627940 tig0023079:-67297 Msa1404720:CDS
GTTGTTATACGCGGCTAGGG+CGG 0.629884 tig0023079:-71556 Msa1404720:CDS
TTGCTTCATCAAGTTCTGAA+GGG 0.630399 tig0023079:+67305 None:intergenic
GGAATTATCTAAGATTATGG+GGG 0.631503 tig0023079:-66579 Msa1404720:CDS
TTCTCTAATAGGAAAATATG+CGG 0.632360 tig0023079:+67105 None:intergenic
GCGTCGTTCATCAGATCATG+AGG 0.633325 tig0023079:-67542 Msa1404720:CDS
GTTCGTTCAAAGGACATGGG+AGG 0.635319 tig0023079:-71609 Msa1404720:exon
ACTTCTTGGACCACAAAAGG+GGG 0.638715 tig0023079:-70779 Msa1404720:CDS
TTTGTGGTCTGCGAAAATCG+AGG 0.650455 tig0023079:+71694 None:intergenic
GCTCGCAAAAGCTATTGCCA+AGG 0.654543 tig0023079:-70719 Msa1404720:CDS
ACAAGACCTGTTGTTATACG+CGG 0.658412 tig0023079:-71565 Msa1404720:CDS
ATATCCAGACCGGAAAGAGA+GGG 0.660218 tig0023079:-67248 Msa1404720:CDS
GTACAATATCAAAAGTAGGG+CGG 0.669503 tig0023079:+66295 None:intergenic
TTTGGGAACTAGAATAACCA+AGG 0.669935 tig0023079:+66465 None:intergenic
TTGTTGTGTAGAGAGTGCTC+GGG 0.671596 tig0023079:-67353 Msa1404720:intron
GTAGAATTTGACTCTATTGG+GGG 0.672250 tig0023079:-70880 Msa1404720:CDS
ACTGCATAATGAGAAGAAAG+GGG 0.674597 tig0023079:-67080 Msa1404720:CDS
CCTGATGAGCAAATGGTTTG+GGG 0.676141 tig0023079:-70659 Msa1404720:CDS
AGTCAAATTCTACATCGATG+TGG 0.703743 tig0023079:+70890 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAAAAAAGTATTAAAAAAT+GGG + tig0023079:66644-66663 None:intergenic 10.0%
!!! ATGAAAAAAGTATTAAAAAA+TGG + tig0023079:66645-66664 None:intergenic 10.0%
!! AATTAAATCACTTAAATAAA+AGG + tig0023079:67071-67090 None:intergenic 10.0%
!! AATAAAAGGAAAAGTAATAT+TGG + tig0023079:67057-67076 None:intergenic 15.0%
!!! CATGATCAAAATATTTTTTT+TGG + tig0023079:67531-67550 None:intergenic 15.0%
!!! TAAATTTTTGCTAATACATA+TGG - tig0023079:67554-67573 Msa1404720:CDS 15.0%
!!! ACACTTATATTTTTCATAAA+AGG - tig0023079:67608-67627 Msa1404720:CDS 15.0%
!! TATTAAAGAAAAAGATCAAA+CGG + tig0023079:68784-68803 None:intergenic 15.0%
!!! TTTTATTAGCCAATAAAAAT+AGG + tig0023079:69559-69578 None:intergenic 15.0%
!!! ATTTTTATTGGCTAATAAAA+TGG - tig0023079:69559-69578 Msa1404720:intron 15.0%
!! ATTTGAAAATTGAAATAGAA+GGG - tig0023079:69858-69877 Msa1404720:intron 15.0%
!!! TTATTTATTTTTCACATTTC+AGG - tig0023079:71284-71303 Msa1404720:intron 15.0%
!! TAATATTCAATCAATACTTG+CGG + tig0023079:66295-66314 None:intergenic 20.0%
!!! TAATAAATTATGCTAGTCTT+AGG + tig0023079:66720-66739 None:intergenic 20.0%
!! TAAGACTAGCATAATTTATT+AGG - tig0023079:66719-66738 Msa1404720:CDS 20.0%
!! AAGACTAGCATAATTTATTA+GGG - tig0023079:66720-66739 Msa1404720:CDS 20.0%
!!! CTTTTTCTAGCTTATATATA+GGG - tig0023079:66932-66951 Msa1404720:intron 20.0%
!!! GATCAAAATATTTTTTTTGG+TGG + tig0023079:67528-67547 None:intergenic 20.0%
!!! AAAGCACAATATATTTTGTA+TGG - tig0023079:67940-67959 Msa1404720:intron 20.0%
!!! AAGCACAATATATTTTGTAT+GGG - tig0023079:67941-67960 Msa1404720:intron 20.0%
!!! AGTTTCTCTTAAGTTTTTAT+TGG + tig0023079:68201-68220 None:intergenic 20.0%
!! AAACTTATTAAGATTGATCT+AGG - tig0023079:68216-68235 Msa1404720:intron 20.0%
!! AACTTATTAAGATTGATCTA+GGG - tig0023079:68217-68236 Msa1404720:intron 20.0%
!! TTATACATGATAGAACATTA+TGG - tig0023079:68262-68281 Msa1404720:intron 20.0%
!!! GTTTATTGATTACCTTAAAA+GGG - tig0023079:68409-68428 Msa1404720:intron 20.0%
!! TTTCTTTAATATTGTAACTG+TGG - tig0023079:68793-68812 Msa1404720:intron 20.0%
!!! AGCTATTTTTTTTATATCTG+TGG + tig0023079:69240-69259 None:intergenic 20.0%
!! AAACTATTGGAAATACAATT+AGG + tig0023079:69447-69466 None:intergenic 20.0%
!!! TTAGTTCAGTTTTAAAAAAG+TGG - tig0023079:69610-69629 Msa1404720:intron 20.0%
!! CAGTTCAAAACTATATAAAA+TGG - tig0023079:69635-69654 Msa1404720:intron 20.0%
!! CATTTGAAAATTGAAATAGA+AGG - tig0023079:69857-69876 Msa1404720:intron 20.0%
!!! TTTCTGAAAGAAGTTATTAT+TGG - tig0023079:69963-69982 Msa1404720:intron 20.0%
!! CTTATTATAGCAGTTAATAA+GGG - tig0023079:70225-70244 Msa1404720:intron 20.0%
!! TTGATAAATGAAACATAGTT+AGG + tig0023079:70263-70282 None:intergenic 20.0%
!! ACTTATATTGTATAATCAGT+CGG + tig0023079:70289-70308 None:intergenic 20.0%
!! TATATTGAAGGTTATCTTAA+AGG - tig0023079:70813-70832 Msa1404720:CDS 20.0%
!! ATATTGAAGGTTATCTTAAA+GGG - tig0023079:70814-70833 Msa1404720:CDS 20.0%
!! AATGAAAAATATACTAACAC+AGG + tig0023079:70986-71005 None:intergenic 20.0%
!! AATCAGACAAATATAACTTT+GGG + tig0023079:71146-71165 None:intergenic 20.0%
!! TAATCAGACAAATATAACTT+TGG + tig0023079:71147-71166 None:intergenic 20.0%
!! GTGTATAATAATACAAGTTT+GGG + tig0023079:71589-71608 None:intergenic 20.0%
!! AGTGTATAATAATACAAGTT+TGG + tig0023079:71590-71609 None:intergenic 20.0%
!! TAAATAAAGTCTAGTATACA+TGG + tig0023079:71684-71703 None:intergenic 20.0%
!!! CTTTATTTATGATTGTTGTT+CGG - tig0023079:71695-71714 Msa1404720:five_prime_UTR 20.0%
!! TCGAAATTTGAAGTTAAAGT+TGG + tig0023079:66395-66414 None:intergenic 25.0%
!! TTGAACCAATTTTCAATTGT+TGG - tig0023079:66673-66692 Msa1404720:CDS 25.0%
! TATCACCAACAATTGAAAAT+TGG + tig0023079:66681-66700 None:intergenic 25.0%
! CCTATATATAAGCTAGAAAA+AGG + tig0023079:66934-66953 None:intergenic 25.0%
!!! CCTTTTTCTAGCTTATATAT+AGG - tig0023079:66931-66950 Msa1404720:intron 25.0%
!! ATAGCCTTTGAAAACTAATA+CGG + tig0023079:66965-66984 None:intergenic 25.0%
! AAGCATAAAACTATCATATG+CGG - tig0023079:66988-67007 Msa1404720:intron 25.0%
! ATGTAGAATTTGACTCTATT+GGG - tig0023079:67152-67171 Msa1404720:CDS 25.0%
!!! CAAAATATTTTTTTTGGTGG+TGG + tig0023079:67525-67544 None:intergenic 25.0%
! TAATCAATAAACCAATCTCA+AGG + tig0023079:68401-68420 None:intergenic 25.0%
!! GGTTTATTGATTACCTTAAA+AGG - tig0023079:68408-68427 Msa1404720:intron 25.0%
! TTTCAATGAAGAACAACAAA+TGG + tig0023079:68893-68912 None:intergenic 25.0%
! AGAATCTCACAAGAAATATT+GGG + tig0023079:68916-68935 None:intergenic 25.0%
! GTATTCTTAACAAATGATGT+AGG - tig0023079:69261-69280 Msa1404720:intron 25.0%
! TGTCTTGTGAAATAATATGT+AGG - tig0023079:69375-69394 Msa1404720:intron 25.0%
! TTGGAAATACAATTAGGAAT+TGG + tig0023079:69441-69460 None:intergenic 25.0%
! AATAAAATGGACGTCATATT+AGG - tig0023079:69572-69591 Msa1404720:intron 25.0%
! ATAAAATGGACGTCATATTA+GGG - tig0023079:69573-69592 Msa1404720:intron 25.0%
! AAAGAAGTTATTATTGGAAC+TGG - tig0023079:69969-69988 Msa1404720:intron 25.0%
! CAACCAGAAAAAAACAATAA+GGG + tig0023079:70054-70073 None:intergenic 25.0%
! TCAACCAGAAAAAAACAATA+AGG + tig0023079:70055-70074 None:intergenic 25.0%
! GCTTATTATAGCAGTTAATA+AGG - tig0023079:70224-70243 Msa1404720:intron 25.0%
! CTTATATTGTATAATCAGTC+GGG + tig0023079:70288-70307 None:intergenic 25.0%
! TACTTCATCGATGAATATAA+TGG + tig0023079:70455-70474 None:intergenic 25.0%
! ACTACTTAAAAACTTACGAT+CGG + tig0023079:70569-70588 None:intergenic 25.0%
! ATAGATTTCAGTTATATAGC+TGG - tig0023079:70856-70875 Msa1404720:CDS 25.0%
! TTCTCTAATAGGAAAATATG+CGG + tig0023079:70932-70951 None:intergenic 25.0%
! TTATGCAGTATTTCTCTAAT+AGG + tig0023079:70943-70962 None:intergenic 25.0%
!! AGGGAATTATCTAAGATTAT+GGG - tig0023079:71453-71472 Msa1404720:CDS 25.0%
! ATGGTACAATATCAAAAGTA+GGG + tig0023079:71745-71764 None:intergenic 25.0%
!! TAGGAATTGGTTTGAATAAG+AGG + tig0023079:66614-66633 None:intergenic 30.0%
TATTCAAACCAATTCCTATG+AGG - tig0023079:66616-66635 Msa1404720:CDS 30.0%
TTAAAAAATGGGTACCTCAT+AGG + tig0023079:66633-66652 None:intergenic 30.0%
TTGAAAACTAATACGGAACA+TGG + tig0023079:66958-66977 None:intergenic 30.0%
!!! TGTTCCGTATTAGTTTTCAA+AGG - tig0023079:66958-66977 Msa1404720:intron 30.0%
!!! GCATATGATAGTTTTATGCT+TGG + tig0023079:66989-67008 None:intergenic 30.0%
AGCATAAAACTATCATATGC+GGG - tig0023079:66989-67008 Msa1404720:intron 30.0%
GATGTAGAATTTGACTCTAT+TGG - tig0023079:67151-67170 Msa1404720:CDS 30.0%
TGTAGAATTTGACTCTATTG+GGG - tig0023079:67153-67172 Msa1404720:CDS 30.0%
GACAATGCATAATATATGCA+AGG - tig0023079:67480-67499 Msa1404720:intron 30.0%
!!! AGAAAGCATCGACAATTTTA+TGG + tig0023079:67653-67672 None:intergenic 30.0%
TACAGTGTGATTACAATAGT+TGG + tig0023079:67702-67721 None:intergenic 30.0%
! ATAGTTTCTTTTGCTGAGAA+GGG - tig0023079:67862-67881 Msa1404720:intron 30.0%
ATATATTGTGCTTTACCACT+GGG + tig0023079:67934-67953 None:intergenic 30.0%
AATATATTGTGCTTTACCAC+TGG + tig0023079:67935-67954 None:intergenic 30.0%
!! TGCTTGATTTATTTTCGTGT+TGG + tig0023079:67990-68009 None:intergenic 30.0%
ATAAGAATACTGTGCTTAAG+TGG - tig0023079:68018-68037 Msa1404720:intron 30.0%
AGAGGTTTACAAGCATAAAT+AGG + tig0023079:68512-68531 None:intergenic 30.0%
GGTTCGTTAGTTAATTAAAG+AGG + tig0023079:68530-68549 None:intergenic 30.0%
GATGTCATTCTCTTAATGTT+AGG + tig0023079:68551-68570 None:intergenic 30.0%
ATTATGATGTACGTTACTGT+AGG - tig0023079:68672-68691 Msa1404720:intron 30.0%
TTCTTCATATTCCATTTGCT+TGG - tig0023079:68711-68730 Msa1404720:intron 30.0%
TCTTCATATTCCATTTGCTT+GGG - tig0023079:68712-68731 Msa1404720:intron 30.0%
TTCTACTATAACCTTTGCTT+AGG + tig0023079:68757-68776 None:intergenic 30.0%
TATTGTAACTGTGGTCAATT+TGG - tig0023079:68802-68821 Msa1404720:intron 30.0%
ATTGTAACTGTGGTCAATTT+GGG - tig0023079:68803-68822 Msa1404720:intron 30.0%
! GATGTGGGTTTTTATATGTT+GGG + tig0023079:68864-68883 None:intergenic 30.0%
CAGAATCTCACAAGAAATAT+TGG + tig0023079:68917-68936 None:intergenic 30.0%
TTATTTCACAAGACAAAGCA+AGG + tig0023079:69370-69389 None:intergenic 30.0%
TGCACAGAAAACAAAACTAT+TGG + tig0023079:69460-69479 None:intergenic 30.0%
!!! TCTAGGGTTCCTATTTTTAT+TGG - tig0023079:69547-69566 Msa1404720:intron 30.0%
ATGGATAACAACCTTACATT+GGG - tig0023079:69808-69827 Msa1404720:intron 30.0%
TTCTTCCATCCATCTATTTA+AGG - tig0023079:69889-69908 Msa1404720:intron 30.0%
! ACGCTAGAAATTTTGTCAAA+TGG + tig0023079:69915-69934 None:intergenic 30.0%
TCTTTCAGAAATAGTGCATT+CGG + tig0023079:69954-69973 None:intergenic 30.0%
!!! TGGAACTGGTTTTTGAAATA+AGG - tig0023079:69983-70002 Msa1404720:intron 30.0%
TCCAGTTTAGAAAGAGTAAA+AGG - tig0023079:70025-70044 Msa1404720:intron 30.0%
! ACCTTTTACTCTTTCTAAAC+TGG + tig0023079:70029-70048 None:intergenic 30.0%
!!! TCTCCCTTATTGTTTTTTTC+TGG - tig0023079:70048-70067 Msa1404720:intron 30.0%
AGTGTATATATGCTTAGTGA+TGG - tig0023079:70106-70125 Msa1404720:intron 30.0%
TGTTGTTATAGAACCAATAC+AGG + tig0023079:70137-70156 None:intergenic 30.0%
!! ATGTGTGGTTATTTCTTTGA+AGG - tig0023079:70169-70188 Msa1404720:intron 30.0%
TAACTGCTATAATAAGCACT+TGG + tig0023079:70221-70240 None:intergenic 30.0%
TTTATGAGCCAAGCTAAATA+CGG + tig0023079:70422-70441 None:intergenic 30.0%
! TCATCGATGAATATAATGGA+TGG + tig0023079:70451-70470 None:intergenic 30.0%
!!! GATGAAGTAGACAGTTTTTT+GGG - tig0023079:70466-70485 Msa1404720:intron 30.0%
AAACATGAAAACTGAGTTCA+TGG - tig0023079:70522-70541 Msa1404720:intron 30.0%
AACTTGATGAAGCAATACTT+CGG - tig0023079:70737-70756 Msa1404720:CDS 30.0%
! TTATATAGCTGGTTTATGCA+AGG - tig0023079:70867-70886 Msa1404720:CDS 30.0%
! TATATAGCTGGTTTATGCAA+GGG - tig0023079:70868-70887 Msa1404720:CDS 30.0%
TCTATTTGATCTTTGCAAGA+AGG - tig0023079:70906-70925 Msa1404720:CDS 30.0%
ATACTGCATAATGAGAAGAA+AGG - tig0023079:70952-70971 Msa1404720:intron 30.0%
TACTGCATAATGAGAAGAAA+GGG - tig0023079:70953-70972 Msa1404720:intron 30.0%
CTGGGAAAATTCAAAAAACA+TGG + tig0023079:71029-71048 None:intergenic 30.0%
! AACAGCATATTTTCACTTCT+GGG + tig0023079:71047-71066 None:intergenic 30.0%
! AAACAGCATATTTTCACTTC+TGG + tig0023079:71048-71067 None:intergenic 30.0%
! CAGGGAATTATCTAAGATTA+TGG - tig0023079:71452-71471 Msa1404720:CDS 30.0%
! GGGAATTATCTAAGATTATG+GGG - tig0023079:71454-71473 Msa1404720:CDS 30.0%
! GGAATTATCTAAGATTATGG+GGG - tig0023079:71455-71474 Msa1404720:CDS 30.0%
AATAACCAAGGAAGTAATTG+CGG + tig0023079:71560-71579 None:intergenic 30.0%
CATGGTACAATATCAAAAGT+AGG + tig0023079:71746-71765 None:intergenic 30.0%
AATTTGACTGCATCATATCA+TGG + tig0023079:71764-71783 None:intergenic 30.0%
! ATTTTCGCAGACCACAAATT+CGG - tig0023079:66345-66364 Msa1404720:three_prime_UTR 35.0%
TTGTTCTTTCGTTCGTTCAA+AGG - tig0023079:66415-66434 Msa1404720:three_prime_UTR 35.0%
AAAGAGATTGCTAAACGTCT+TGG - tig0023079:66584-66603 Msa1404720:CDS 35.0%
!! AAATTATGCTAGTCTTAGGC+AGG + tig0023079:66716-66735 None:intergenic 35.0%
! TTTATTAGGGATGAGAGCAT+AGG - tig0023079:66733-66752 Msa1404720:intron 35.0%
GAAAACTGCAGCACTAATTT+CGG - tig0023079:66787-66806 Msa1404720:intron 35.0%
AAAACTGCAGCACTAATTTC+GGG - tig0023079:66788-66807 Msa1404720:intron 35.0%
!!! TGGTTTTATGCAAAAACTCC+AGG + tig0023079:67016-67035 None:intergenic 35.0%
GGAGATAAGTTAGCATAGAA+TGG + tig0023079:67036-67055 None:intergenic 35.0%
GTCAGGATTTATAACATCAC+AGG + tig0023079:67125-67144 None:intergenic 35.0%
AGTCAAATTCTACATCGATG+TGG + tig0023079:67147-67166 None:intergenic 35.0%
GTAGAATTTGACTCTATTGG+GGG - tig0023079:67154-67173 Msa1404720:CDS 35.0%
AAACTTCTTGGACCACAAAA+GGG - tig0023079:67253-67272 Msa1404720:CDS 35.0%
! GAGCAGTTTTCATTAATGTG+AGG - tig0023079:67344-67363 Msa1404720:CDS 35.0%
TATCAAACCTGATGAGCAAA+TGG - tig0023079:67368-67387 Msa1404720:intron 35.0%
! AACACACTTACCAAGCTTTT+GGG + tig0023079:67404-67423 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+CGG - tig0023079:67485-67504 Msa1404720:CDS 35.0%
TATGCGAGTGTATAAAAGCT+TGG - tig0023079:67672-67691 Msa1404720:intron 35.0%
AAAGAAACTATGTTGGTCGT+TGG + tig0023079:67853-67872 None:intergenic 35.0%
CTCAGCAAAAGAAACTATGT+TGG + tig0023079:67860-67879 None:intergenic 35.0%
! CATAGTTTCTTTTGCTGAGA+AGG - tig0023079:67861-67880 Msa1404720:intron 35.0%
!!! AGTTTCCACCCTCTTTTTTA+CGG + tig0023079:68076-68095 None:intergenic 35.0%
TAAAAAAGAGGGTGGAAACT+AGG - tig0023079:68076-68095 Msa1404720:intron 35.0%
AGTAAGAAGAGTAGATCAGA+TGG - tig0023079:68143-68162 Msa1404720:intron 35.0%
! AAGCTAATTTGCCTTGAGAT+TGG - tig0023079:68387-68406 Msa1404720:intron 35.0%
ACAAGCATAAATAGGACACA+GGG + tig0023079:68504-68523 None:intergenic 35.0%
TACAAGCATAAATAGGACAC+AGG + tig0023079:68505-68524 None:intergenic 35.0%
TGTACGTTACTGTAGGAATA+TGG - tig0023079:68679-68698 Msa1404720:intron 35.0%
! GGATGTGGGTTTTTATATGT+TGG + tig0023079:68865-68884 None:intergenic 35.0%
ACATATAAAAACCCACATCC+AGG - tig0023079:68865-68884 Msa1404720:intron 35.0%
TGATCGTGAAAAAGGTTAAC+AGG + tig0023079:69054-69073 None:intergenic 35.0%
CGTGAATCAAGATTGTAAGA+AGG - tig0023079:69078-69097 Msa1404720:intron 35.0%
!!! TGTGATGGCAGAGATTTTTT+GGG + tig0023079:69148-69167 None:intergenic 35.0%
!!! ATGTGATGGCAGAGATTTTT+TGG + tig0023079:69149-69168 None:intergenic 35.0%
ATAGATGAAGTAGCATGTGA+TGG + tig0023079:69163-69182 None:intergenic 35.0%
GAATGTCACATGTAACATTG+TGG + tig0023079:69207-69226 None:intergenic 35.0%
CAATGTTACATGTGACATTC+AGG - tig0023079:69207-69226 Msa1404720:intron 35.0%
ACAATAGCCAATCACAAAAG+GGG + tig0023079:69518-69537 None:intergenic 35.0%
CACAATAGCCAATCACAAAA+GGG + tig0023079:69519-69538 None:intergenic 35.0%
ATCACCATTAGATGAACAGA+TGG + tig0023079:69775-69794 None:intergenic 35.0%
GATGGATAACAACCTTACAT+TGG - tig0023079:69807-69826 Msa1404720:intron 35.0%
! AAGCTCATTTTCCCAATGTA+AGG + tig0023079:69822-69841 None:intergenic 35.0%
AAATAGATGGATGGAAGAAG+CGG + tig0023079:69888-69907 None:intergenic 35.0%
! AATGGCCTTAAATAGATGGA+TGG + tig0023079:69897-69916 None:intergenic 35.0%
! GTCAAATGGCCTTAAATAGA+TGG + tig0023079:69901-69920 None:intergenic 35.0%
CATATATACACTCCTCAAGA+AGG + tig0023079:70098-70117 None:intergenic 35.0%
TTATAGAACCAATACAGGAG+TGG + tig0023079:70132-70151 None:intergenic 35.0%
ACAGTAGATTAGCAAATGTG+TGG - tig0023079:70154-70173 Msa1404720:intron 35.0%
AATATTTGTCTGTTCTGCAG+TGG - tig0023079:70393-70412 Msa1404720:intron 35.0%
!!! CGATGAAGTAGACAGTTTTT+TGG - tig0023079:70465-70484 Msa1404720:intron 35.0%
ACTTAAAAACTTACGATCGG+TGG + tig0023079:70566-70585 None:intergenic 35.0%
!! TTGCTTCATCAAGTTCTGAA+GGG + tig0023079:70732-70751 None:intergenic 35.0%
! ATTGCTTCATCAAGTTCTGA+AGG + tig0023079:70733-70752 None:intergenic 35.0%
TATCCAATTTCAAAGGCTTG+AGG + tig0023079:70769-70788 None:intergenic 35.0%
GTCTGGATATCCAATTTCAA+AGG + tig0023079:70776-70795 None:intergenic 35.0%
TTGAAATTGGATATCCAGAC+CGG - tig0023079:70776-70795 Msa1404720:CDS 35.0%
ACTGCATAATGAGAAGAAAG+GGG - tig0023079:70954-70973 Msa1404720:intron 35.0%
! AAGATCAATTTGTGATGACG+TGG - tig0023079:71201-71220 Msa1404720:intron 35.0%
TTTAATCCTGAGCATCTACT+TGG + tig0023079:71491-71510 None:intergenic 35.0%
TTTGGGAACTAGAATAACCA+AGG + tig0023079:71572-71591 None:intergenic 35.0%
TGCATGAAATTCTGAGCTAA+AGG + tig0023079:71635-71654 None:intergenic 35.0%
TACAATATCAAAAGTAGGGC+GGG + tig0023079:71741-71760 None:intergenic 35.0%
GTACAATATCAAAAGTAGGG+CGG + tig0023079:71742-71761 None:intergenic 35.0%
GTATCCAACTACCGAATTTG+TGG + tig0023079:66359-66378 None:intergenic 40.0%
TTTCGTTCGTTCAAAGGACA+TGG - tig0023079:66421-66440 Msa1404720:three_prime_UTR 40.0%
TTCGTTCGTTCAAAGGACAT+GGG - tig0023079:66422-66441 Msa1404720:three_prime_UTR 40.0%
ACAAGACCTGTTGTTATACG+CGG - tig0023079:66469-66488 Msa1404720:three_prime_UTR 40.0%
!! AAGTTACTGGGTATTGGTCA+CGG - tig0023079:66505-66524 Msa1404720:three_prime_UTR 40.0%
TTCTTCGATGATTCACGGTT+CGG + tig0023079:66548-66567 None:intergenic 40.0%
AATGGGTACCTCATAGGAAT+TGG + tig0023079:66627-66646 None:intergenic 40.0%
!! ATGAGAGCATAGGTTGGTTT+CGG - tig0023079:66743-66762 Msa1404720:intron 40.0%
TCGGGCTGAAAATTGTCAAA+CGG - tig0023079:66762-66781 Msa1404720:intron 40.0%
TAGTTGCATAGAGCAACACA+AGG - tig0023079:66831-66850 Msa1404720:intron 40.0%
TTGCGCTCTTTACTGTATAC+AGG - tig0023079:67090-67109 Msa1404720:CDS 40.0%
AATTCTACATCGATGTGGTC+AGG + tig0023079:67142-67161 None:intergenic 40.0%
! TTTTCGCATGGCAAACTTCT+TGG - tig0023079:67241-67260 Msa1404720:CDS 40.0%
CAAACTTCTTGGACCACAAA+AGG - tig0023079:67252-67271 Msa1404720:CDS 40.0%
AACTTCTTGGACCACAAAAG+GGG - tig0023079:67254-67273 Msa1404720:CDS 40.0%
AACCTGATGAGCAAATGGTT+TGG - tig0023079:67373-67392 Msa1404720:intron 40.0%
ACCTGATGAGCAAATGGTTT+GGG - tig0023079:67374-67393 Msa1404720:intron 40.0%
! CAACACACTTACCAAGCTTT+TGG + tig0023079:67405-67424 None:intergenic 40.0%
GCATAATATATGCAAGGTCC+GGG - tig0023079:67486-67505 Msa1404720:CDS 40.0%
CATAATATATGCAAGGTCCG+GGG - tig0023079:67487-67506 Msa1404720:CDS 40.0%
!!! ATTTTTTTTGGTGGTGGCCA+GGG + tig0023079:67519-67538 None:intergenic 40.0%
!!! TATTTTTTTTGGTGGTGGCC+AGG + tig0023079:67520-67539 None:intergenic 40.0%
TGGTATCACTTGCAGTTGTA+AGG - tig0023079:67786-67805 Msa1404720:intron 40.0%
TCAAATACCATTTAGCCCAG+TGG - tig0023079:67916-67935 Msa1404720:intron 40.0%
! TTTTGTATGGGACAGAGTGT+TGG - tig0023079:67953-67972 Msa1404720:intron 40.0%
! TTTGTATGGGACAGAGTGTT+GGG - tig0023079:67954-67973 Msa1404720:intron 40.0%
GCTTAAGTGGTACTCATAGT+AGG - tig0023079:68031-68050 Msa1404720:intron 40.0%
GTACTCATAGTAGGAGAGTT+GGG - tig0023079:68040-68059 Msa1404720:intron 40.0%
TACTCATAGTAGGAGAGTTG+GGG - tig0023079:68041-68060 Msa1404720:intron 40.0%
TAGCACTCACCGTAAAAAAG+AGG - tig0023079:68064-68083 Msa1404720:intron 40.0%
AGCACTCACCGTAAAAAAGA+GGG - tig0023079:68065-68084 Msa1404720:intron 40.0%
AAGAAGAGTAGATCAGATGG+AGG - tig0023079:68146-68165 Msa1404720:intron 40.0%
AATCACATCCCTAGAGACAA+AGG - tig0023079:68171-68190 Msa1404720:intron 40.0%
! TTGGTCTTCCTTTGTCTCTA+GGG + tig0023079:68182-68201 None:intergenic 40.0%
!! ATTGGTCTTCCTTTGTCTCT+AGG + tig0023079:68183-68202 None:intergenic 40.0%
! AAGCCTTATCACAGTATGTG+GGG + tig0023079:68311-68330 None:intergenic 40.0%
! CAAGCCTTATCACAGTATGT+GGG + tig0023079:68312-68331 None:intergenic 40.0%
!! GCAATGAGTTTGTTGCAGAA+CGG + tig0023079:68454-68473 None:intergenic 40.0%
AAGCATAAATAGGACACAGG+GGG + tig0023079:68502-68521 None:intergenic 40.0%
CAAGCATAAATAGGACACAG+GGG + tig0023079:68503-68522 None:intergenic 40.0%
!!! TCCAGCTTTTAGAGCTATGA+GGG + tig0023079:68630-68649 None:intergenic 40.0%
!!! TTCCAGCTTTTAGAGCTATG+AGG + tig0023079:68631-68650 None:intergenic 40.0%
! AACTGTGGTCAATTTGGGTT+TGG - tig0023079:68808-68827 Msa1404720:intron 40.0%
! TATGTTGGGTCTGTTTCTCT+CGG + tig0023079:68850-68869 None:intergenic 40.0%
TCTCTCTCTCTCACATCTTT+GGG + tig0023079:69013-69032 None:intergenic 40.0%
ATCTATGCTTGACCACACTA+GGG - tig0023079:69177-69196 Msa1404720:intron 40.0%
!! AAAAGCATTTGTCACCTGGT+GGG - tig0023079:69324-69343 Msa1404720:intron 40.0%
!! GGTGTTATTAAAATCCCACC+AGG + tig0023079:69341-69360 None:intergenic 40.0%
!! GGTGGGATTTTAATAACACC+AGG - tig0023079:69341-69360 Msa1404720:intron 40.0%
CAATAGCCAATCACAAAAGG+GGG + tig0023079:69517-69536 None:intergenic 40.0%
CCACAATAGCCAATCACAAA+AGG + tig0023079:69520-69539 None:intergenic 40.0%
!! CCTTTTGTGATTGGCTATTG+TGG - tig0023079:69517-69536 Msa1404720:intron 40.0%
AATGGACGTCATATTAGGGT+TGG - tig0023079:69577-69596 Msa1404720:intron 40.0%
!! CATATTAGGGTTGGTTCTAG+TGG - tig0023079:69586-69605 Msa1404720:intron 40.0%
AAGGCCATCTGTTCATCTAA+TGG - tig0023079:69768-69787 Msa1404720:intron 40.0%
!!! GGTGATCTGTTGTTTTCAGA+TGG - tig0023079:69789-69808 Msa1404720:intron 40.0%
TTTGAAGGCTTGAAGCTGTT+CGG - tig0023079:70184-70203 Msa1404720:intron 40.0%
GAAACATAGTTAGGTATGCC+AGG + tig0023079:70254-70273 None:intergenic 40.0%
!!! TTCTGTTGCTTTTTTCTGCG+TGG - tig0023079:70348-70367 Msa1404720:intron 40.0%
! TTCTGCGTGGTTCTTTGTTT+AGG - tig0023079:70361-70380 Msa1404720:intron 40.0%
! AAACTGAGTTCATGGCTCTA+TGG - tig0023079:70530-70549 Msa1404720:intron 40.0%
! AACTGAGTTCATGGCTCTAT+GGG - tig0023079:70531-70550 Msa1404720:intron 40.0%
!! CTTCCTCAAGCCTTTGAAAT+TGG - tig0023079:70763-70782 Msa1404720:CDS 40.0%
ATATATCAGCCCTCTCTTTC+CGG + tig0023079:70798-70817 None:intergenic 40.0%
AGAGAGGGCTGATATATTGA+AGG - tig0023079:70801-70820 Msa1404720:CDS 40.0%
ACATCAAGAACGTCGTTTCA+TGG - tig0023079:71396-71415 Msa1404720:intron 40.0%
!! TCAGGTTGAAGCTGTAATCA+GGG - tig0023079:71434-71453 Msa1404720:CDS 40.0%
AGTAATTGCGGTTGCAATCT+GGG + tig0023079:71548-71567 None:intergenic 40.0%
AAGTAATTGCGGTTGCAATC+TGG + tig0023079:71549-71568 None:intergenic 40.0%
!! TTCGCGTAAGTTTCTGAGGT+GGG + tig0023079:66252-66271 None:intergenic 45.0%
! TTTCGCGTAAGTTTCTGAGG+TGG + tig0023079:66253-66272 None:intergenic 45.0%
ACCTCAGAAACTTACGCGAA+AGG - tig0023079:66252-66271 Msa1404720:three_prime_UTR 45.0%
TCCTTTCGCGTAAGTTTCTG+AGG + tig0023079:66256-66275 None:intergenic 45.0%
TTGTGGTCTGCGAAAATCGA+GGG + tig0023079:66342-66361 None:intergenic 45.0%
TTTGTGGTCTGCGAAAATCG+AGG + tig0023079:66343-66362 None:intergenic 45.0%
CAGACCACAAATTCGGTAGT+TGG - tig0023079:66352-66371 Msa1404720:three_prime_UTR 45.0%
!! GGGAGGTTTTTCAGATACGA+AGG - tig0023079:66442-66461 Msa1404720:three_prime_UTR 45.0%
!! AGTTACTGGGTATTGGTCAC+GGG - tig0023079:66506-66525 Msa1404720:three_prime_UTR 45.0%
TCTTCGATGATTCACGGTTC+GGG + tig0023079:66547-66566 None:intergenic 45.0%
GAACCGTGAATCATCGAAGA+AGG - tig0023079:66547-66566 Msa1404720:CDS 45.0%
GAGCCTTCTTCGATGATTCA+CGG + tig0023079:66553-66572 None:intergenic 45.0%
! TTAGGGATGAGAGCATAGGT+TGG - tig0023079:66737-66756 Msa1404720:intron 45.0%
!! TGAGAGCATAGGTTGGTTTC+GGG - tig0023079:66744-66763 Msa1404720:intron 45.0%
AAACTATCATATGCGGGACC+TGG - tig0023079:66995-67014 Msa1404720:intron 45.0%
AAACAAGTCTGGTCGTTGCA+GGG + tig0023079:67224-67243 None:intergenic 45.0%
AAAACAAGTCTGGTCGTTGC+AGG + tig0023079:67225-67244 None:intergenic 45.0%
TTGCCATGCGAAAACAAGTC+TGG + tig0023079:67235-67254 None:intergenic 45.0%
ACTTCTTGGACCACAAAAGG+GGG - tig0023079:67255-67274 Msa1404720:CDS 45.0%
! TACAACAGAACCCCCTTTTG+TGG + tig0023079:67268-67287 None:intergenic 45.0%
CAAAAGGGGGTTCTGTTGTA+TGG - tig0023079:67268-67287 Msa1404720:CDS 45.0%
AAAGCTATTGCCAAGGAGTC+TGG - tig0023079:67322-67341 Msa1404720:CDS 45.0%
CCTGATGAGCAAATGGTTTG+GGG - tig0023079:67375-67394 Msa1404720:intron 45.0%
CCAACTGAGCTAAGCTCAAA+AGG + tig0023079:67456-67475 None:intergenic 45.0%
! CCTTTTGAGCTTAGCTCAGT+TGG - tig0023079:67453-67472 Msa1404720:intron 45.0%
TTGAGCTTAGCTCAGTTGGT+AGG - tig0023079:67457-67476 Msa1404720:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG - tig0023079:67458-67477 Msa1404720:intron 45.0%
GTTTCACTCACTGTTACGAG+TGG - tig0023079:67766-67785 Msa1404720:intron 45.0%
TGCTTTACCACTGGGCTAAA+TGG + tig0023079:67926-67945 None:intergenic 45.0%
GGTACTCATAGTAGGAGAGT+TGG - tig0023079:68039-68058 Msa1404720:intron 45.0%
ACTCACCGTAAAAAAGAGGG+TGG - tig0023079:68068-68087 Msa1404720:intron 45.0%
CTTATCACAGTATGTGGGGT+CGG + tig0023079:68307-68326 None:intergenic 45.0%
! CCAAGCCTTATCACAGTATG+TGG + tig0023079:68313-68332 None:intergenic 45.0%
CCACATACTGTGATAAGGCT+TGG - tig0023079:68310-68329 Msa1404720:intron 45.0%
!!! GAGGAGTGTTTGCCCTTTTA+AGG + tig0023079:68424-68443 None:intergenic 45.0%
TAAAAGGGCAAACACTCCTC+AGG - tig0023079:68424-68443 Msa1404720:intron 45.0%
!!! TAGGTTGATTTTGAGGTGGG+CGG + tig0023079:68606-68625 None:intergenic 45.0%
!!! GGCTAGGTTGATTTTGAGGT+GGG + tig0023079:68609-68628 None:intergenic 45.0%
!!! TGAGGGCTAGGTTGATTTTG+AGG + tig0023079:68613-68632 None:intergenic 45.0%
!!! CTTTTAGAGCTATGAGGGCT+AGG + tig0023079:68625-68644 None:intergenic 45.0%
GCTGTGTATGTCCTAAGCAA+AGG - tig0023079:68743-68762 Msa1404720:intron 45.0%
! GGTTTGGCTCATTAGCCATT+AGG - tig0023079:68824-68843 Msa1404720:intron 45.0%
AACAAATGGAGCCTGGATGT+GGG + tig0023079:68879-68898 None:intergenic 45.0%
GAAGAACAACAAATGGAGCC+TGG + tig0023079:68886-68905 None:intergenic 45.0%
TGTGAGATTCTGTTGTAGCC+TGG - tig0023079:68925-68944 Msa1404720:intron 45.0%
GTGAGATTCTGTTGTAGCCT+GGG - tig0023079:68926-68945 Msa1404720:intron 45.0%
TGAGATTCTGTTGTAGCCTG+GGG - tig0023079:68927-68946 Msa1404720:intron 45.0%
CTCTCTCTCTCTCACATCTT+TGG + tig0023079:69014-69033 None:intergenic 45.0%
CACGATCGTGATCGTGAAAA+AGG + tig0023079:69062-69081 None:intergenic 45.0%
!!! TTTTTGGGTCACGGGTATTG+CGG + tig0023079:69133-69152 None:intergenic 45.0%
!!! GCAGAGATTTTTTGGGTCAC+GGG + tig0023079:69141-69160 None:intergenic 45.0%
!!! GGCAGAGATTTTTTGGGTCA+CGG + tig0023079:69142-69161 None:intergenic 45.0%
CATCTATGCTTGACCACACT+AGG - tig0023079:69176-69195 Msa1404720:intron 45.0%
CATTGTGGTTAACCCTAGTG+TGG + tig0023079:69192-69211 None:intergenic 45.0%
!! GCAGAAAAGCATTTGTCACC+TGG - tig0023079:69320-69339 Msa1404720:intron 45.0%
!! GAAAAGCATTTGTCACCTGG+TGG - tig0023079:69323-69342 Msa1404720:intron 45.0%
! TGTGATTGGCTATTGTGGTC+AGG - tig0023079:69522-69541 Msa1404720:intron 45.0%
! GTGATTGGCTATTGTGGTCA+GGG - tig0023079:69523-69542 Msa1404720:intron 45.0%
CTATTGTGGTCAGGGATCTA+GGG - tig0023079:69531-69550 Msa1404720:intron 45.0%
AGAACACCAGCACTCGATAA+GGG + tig0023079:69686-69705 None:intergenic 45.0%
AAGAACACCAGCACTCGATA+AGG + tig0023079:69687-69706 None:intergenic 45.0%
! CTCAGTCTGCTTGATGGATA+AGG - tig0023079:69749-69768 Msa1404720:intron 45.0%
TCGTTGCAAGATCCTTCTTG+AGG - tig0023079:70083-70102 Msa1404720:intron 45.0%
AGCAGTTAATAAGGGCAACC+TGG - tig0023079:70233-70252 Msa1404720:intron 45.0%
!! GTTGTTGTGTAGAGAGTGCT+CGG - tig0023079:70680-70699 Msa1404720:CDS 45.0%
!! TTGTTGTGTAGAGAGTGCTC+GGG - tig0023079:70681-70700 Msa1404720:CDS 45.0%
ATATCCAGACCGGAAAGAGA+GGG - tig0023079:70786-70805 Msa1404720:CDS 45.0%
GGTTATCTTAAAGGGCGAGA+AGG - tig0023079:70822-70841 Msa1404720:CDS 45.0%
GGTTTATGCAAGGGTTACAC+TGG - tig0023079:70877-70896 Msa1404720:CDS 45.0%
TGTCTTCCGCGAAGTAGAAA+GGG + tig0023079:71346-71365 None:intergenic 45.0%
ATGTCTTCCGCGAAGTAGAA+AGG + tig0023079:71347-71366 None:intergenic 45.0%
TTCTACTTCGCGGAAGACAT+CGG - tig0023079:71347-71366 Msa1404720:intron 45.0%
!! CTCAGGTTGAAGCTGTAATC+AGG - tig0023079:71433-71452 Msa1404720:CDS 45.0%
TCACATCCAAGTAGATGCTC+AGG - tig0023079:71482-71501 Msa1404720:CDS 45.0%
TGCAACCGCAATTACTTCCT+TGG - tig0023079:71552-71571 Msa1404720:CDS 45.0%
TTCTGAGCTAAAGGCAACAC+TGG + tig0023079:71626-71645 None:intergenic 45.0%
!! TAATGTAAAAAAAAAAAAAA+AGG + tig0023079:68583-68602 None:intergenic 5.0%
GTTCGTTCAAAGGACATGGG+AGG - tig0023079:66425-66444 Msa1404720:three_prime_UTR 50.0%
ACCTGTTGTTATACGCGGCT+AGG - tig0023079:66474-66493 Msa1404720:three_prime_UTR 50.0%
CCTGTTGTTATACGCGGCTA+GGG - tig0023079:66475-66494 Msa1404720:three_prime_UTR 50.0%
GGCGCTAAGTTACTGGGTAT+TGG - tig0023079:66499-66518 Msa1404720:three_prime_UTR 50.0%
AACAAGTCTGGTCGTTGCAG+GGG + tig0023079:67223-67242 None:intergenic 50.0%
!! CGACCAGACTTGTTTTCGCA+TGG - tig0023079:67229-67248 Msa1404720:CDS 50.0%
GTTCTGTTGTATGGACCTCC+TGG - tig0023079:67277-67296 Msa1404720:CDS 50.0%
! GGCAATAGCTTTTGCGAGCA+TGG + tig0023079:67314-67333 None:intergenic 50.0%
GCTCGCAAAAGCTATTGCCA+AGG - tig0023079:67315-67334 Msa1404720:CDS 50.0%
GAAAACTGCTCCAGACTCCT+TGG + tig0023079:67335-67354 None:intergenic 50.0%
CCCCAAACCATTTGCTCATC+AGG + tig0023079:67378-67397 None:intergenic 50.0%
TTTGGGGATGCCCAAAAGCT+TGG - tig0023079:67391-67410 Msa1404720:intron 50.0%
AGAGGGTGGAAACTAGGCTT+AGG - tig0023079:68082-68101 Msa1404720:intron 50.0%
CGACCCCACATACTGTGATA+AGG - tig0023079:68305-68324 Msa1404720:intron 50.0%
AAATAGGACACAGGGGGAGA+GGG + tig0023079:68496-68515 None:intergenic 50.0%
TAAATAGGACACAGGGGGAG+AGG + tig0023079:68497-68516 None:intergenic 50.0%
!!! GGGCTAGGTTGATTTTGAGG+TGG + tig0023079:68610-68629 None:intergenic 50.0%
!! GCCCTCATAGCTCTAAAAGC+TGG - tig0023079:68626-68645 Msa1404720:intron 50.0%
GCAGATCAAGCCCAAGCAAA+TGG + tig0023079:68725-68744 None:intergenic 50.0%
! GTCTGTTTCTCTCGGCCTAA+TGG + tig0023079:68842-68861 None:intergenic 50.0%
CAACAAATGGAGCCTGGATG+TGG + tig0023079:68880-68899 None:intergenic 50.0%
GAGATTCTGTTGTAGCCTGG+GGG - tig0023079:68928-68947 Msa1404720:intron 50.0%
CAAGACAAAGCAAGGCAACC+TGG + tig0023079:69362-69381 None:intergenic 50.0%
! CTCTCTCCCCCTTTTGTGAT+TGG - tig0023079:69508-69527 Msa1404720:intron 50.0%
GCTATTGTGGTCAGGGATCT+AGG - tig0023079:69530-69549 Msa1404720:intron 50.0%
TGAACACCCTTATCGAGTGC+TGG - tig0023079:69677-69696 Msa1404720:intron 50.0%
CGAACTCTCAGTCTGCTTGA+TGG - tig0023079:69743-69762 Msa1404720:intron 50.0%
AGTGATGGCCACTCCTGTAT+TGG - tig0023079:70121-70140 Msa1404720:intron 50.0%
GAAGCTGTTCGGCTGCATAT+AGG - tig0023079:70195-70214 Msa1404720:intron 50.0%
AGTGGCTGCCGTATTTAGCT+TGG - tig0023079:70411-70430 Msa1404720:intron 50.0%
GCGTCGTTCATCAGATCATG+AGG - tig0023079:70492-70511 Msa1404720:intron 50.0%
! GAGTTCATGGCTCTATGGGA+TGG - tig0023079:70535-70554 Msa1404720:intron 50.0%
!! TGTAGAGAGTGCTCGGGTTA+TGG - tig0023079:70687-70706 Msa1404720:CDS 50.0%
GATATCCAGACCGGAAAGAG+AGG - tig0023079:70785-70804 Msa1404720:CDS 50.0%
ACCTTTGTCGCAGGCAGATT+TGG - tig0023079:71314-71333 Msa1404720:intron 50.0%
TCCAAATCTGCCTGCGACAA+AGG + tig0023079:71318-71337 None:intergenic 50.0%
AGAAGGCCCTTTCTACTTCG+CGG - tig0023079:71337-71356 Msa1404720:intron 50.0%
CCCTAGCCGCGTATAACAAC+AGG + tig0023079:66478-66497 None:intergenic 55.0%
GTTGTTATACGCGGCTAGGG+CGG - tig0023079:66478-66497 Msa1404720:three_prime_UTR 55.0%
TAGGGCGGCGCTAAGTTACT+GGG - tig0023079:66493-66512 Msa1404720:three_prime_UTR 55.0%
! CACGGTTCGGGTCGAGATAA+CGG + tig0023079:66535-66554 None:intergenic 55.0%
CCCTCACGCGCACAAAGATT+GGG + tig0023079:66908-66927 None:intergenic 55.0%
CCCAATCTTTGTGCGCGTGA+GGG - tig0023079:66905-66924 Msa1404720:intron 55.0%
CCAATCTTTGTGCGCGTGAG+GGG - tig0023079:66906-66925 Msa1404720:intron 55.0%
TTGTATGGACCTCCTGGCAC+TGG - tig0023079:67283-67302 Msa1404720:CDS 55.0%
TGTATGGACCTCCTGGCACT+GGG - tig0023079:67284-67303 Msa1404720:CDS 55.0%
! ATGGTTTTCCCAGTGCCAGG+AGG + tig0023079:67295-67314 None:intergenic 55.0%
! AGCATGGTTTTCCCAGTGCC+AGG + tig0023079:67298-67317 None:intergenic 55.0%
GTTGCAGAACGGAAAGCCTG+AGG + tig0023079:68443-68462 None:intergenic 55.0%
TTCATGCATCTCTCTCCCCC+AGG + tig0023079:68946-68965 None:intergenic 55.0%
ACTCACCGGCAGTTAGTGGA+CGG + tig0023079:69107-69126 None:intergenic 55.0%
GTCAACTCACCGGCAGTTAG+TGG + tig0023079:69111-69130 None:intergenic 55.0%
! GGGTATTGCGGTCAACTCAC+CGG + tig0023079:69121-69140 None:intergenic 55.0%
GGAACCTAGACCTTTGTCGC+AGG - tig0023079:71305-71324 Msa1404720:intron 55.0%
TCTGCCTGCGACAAAGGTCT+AGG + tig0023079:71312-71331 None:intergenic 55.0%
GTCGCAGGCAGATTTGGAGA+AGG - tig0023079:71320-71339 Msa1404720:intron 55.0%
ACGTCGTTTCATGGCGAGTC+AGG - tig0023079:71405-71424 Msa1404720:intron 55.0%
TGGCGAGTCAGGTGATTCTC+AGG - tig0023079:71416-71435 Msa1404720:intron 55.0%
CTAGGGCGGCGCTAAGTTAC+TGG - tig0023079:66492-66511 Msa1404720:three_prime_UTR 60.0%
GCCCAATCTTTGTGCGCGTG+AGG - tig0023079:66904-66923 Msa1404720:intron 60.0%
CCCCTCACGCGCACAAAGAT+TGG + tig0023079:66909-66928 None:intergenic 60.0%
GATGTGCGAACAGCTCGCAC+AGG - tig0023079:68981-69000 Msa1404720:intron 60.0%
! CTCACCGGCAGTTAGTGGAC+GGG + tig0023079:69106-69125 None:intergenic 60.0%
TCAGCCCTCTCTTTCCGGTC+TGG + tig0023079:70793-70812 None:intergenic 60.0%
AAGGTCCGGGGCTCAAACCC+TGG - tig0023079:67499-67518 Msa1404720:CDS 65.0%
GGCACCCGTCCACTAACTGC+CGG - tig0023079:69099-69118 Msa1404720:intron 65.0%
GGTGGCCAGGGTTTGAGCCC+CGG + tig0023079:67507-67526 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0023079 gene 66243 71813 66243 ID=Msa1404720;Name=Msa1404720
tig0023079 mRNA 66243 71813 66243 ID=Msa1404720-mRNA-1;Parent=Msa1404720;Name=Msa1404720-mRNA-1;_AED=0.30;_eAED=0.30;_QI=197|1|1|1|1|1|5|304|385
tig0023079 exon 66243 66750 66243 ID=Msa1404720-mRNA-1:exon:23766;Parent=Msa1404720-mRNA-1
tig0023079 exon 67069 67364 67069 ID=Msa1404720-mRNA-1:exon:23765;Parent=Msa1404720-mRNA-1
tig0023079 exon 67485 67643 67485 ID=Msa1404720-mRNA-1:exon:23764;Parent=Msa1404720-mRNA-1
tig0023079 exon 70644 70944 70644 ID=Msa1404720-mRNA-1:exon:23763;Parent=Msa1404720-mRNA-1
tig0023079 exon 71419 71813 71419 ID=Msa1404720-mRNA-1:exon:23762;Parent=Msa1404720-mRNA-1
tig0023079 five_prime_UTR 71617 71813 71617 ID=Msa1404720-mRNA-1:five_prime_utr;Parent=Msa1404720-mRNA-1
tig0023079 CDS 71419 71616 71419 ID=Msa1404720-mRNA-1:cds;Parent=Msa1404720-mRNA-1
tig0023079 CDS 70644 70944 70644 ID=Msa1404720-mRNA-1:cds;Parent=Msa1404720-mRNA-1
tig0023079 CDS 67485 67643 67485 ID=Msa1404720-mRNA-1:cds;Parent=Msa1404720-mRNA-1
tig0023079 CDS 67069 67364 67069 ID=Msa1404720-mRNA-1:cds;Parent=Msa1404720-mRNA-1
tig0023079 CDS 66547 66750 66547 ID=Msa1404720-mRNA-1:cds;Parent=Msa1404720-mRNA-1
tig0023079 three_prime_UTR 66243 66546 66243 ID=Msa1404720-mRNA-1:three_prime_utr;Parent=Msa1404720-mRNA-1
Gene Sequence

>Msa1404720

ATGGGAGGTTTTTCAGATACGAAGGTTTTACAAGACCTGTTGTTATACGCGGCTAGGGCGGCGCTAAGTTACTGGGTATTGGTCACGGGTCTCCGTTATCTCGACCCGAACCGTGAATCATCGAAGAAGGCTCTTGAACAGAAGAAAGAGATTGCTAAACGTCTTGGTCGTCCTCTTATTCAAACCAATTCCTATGAGGATGTAATAGCCTGTGATGTTATAAATCCTGACCACATCGATGTAGAATTTGACTCTATTGGGGGTCTTGACACAATTAAACAAACTTTGTTTGAGCTTGTTATTCTACCCCTGCAACGACCAGACTTGTTTTCGCATGGCAAACTTCTTGGACCACAAAAGGGGGTTCTGTTGTATGGACCTCCTGGCACTGGGAAAACCATGCTCGCAAAAGCTATTGCCAAGGAGTCTGGAGCAGTTTTCATTAATGTGAGGATATCAAACCTGATGAGCAAATGGTTTGGGGATGCCCAAAAGCTTGTGGCTGCCGTATTTAGCTTGGCTCATAAACTTCAGCCATCCATTATATTCATCGATGAAGTAGACAGTTTTTTGGGTCAGCGTCGTTCATCAGATCATGAGGCTGTGTTAAACATGAAAACTGAGTTCATGGCTCTATGGGATGGATTCGCCACCGATCAGAGTGCTCGGGTTATGGTACTTGCAGCAACTAATCGCCCTTCAGAACTTGATGAAGCAATACTTCGGCGACTTCCTCAAGCCTTTGAAATTGGATATCCAGACCGGAAAGAGAGGGCTGATATATTGAAGGTTATCTTAAAGGGCGAGAAGGTTGAAGATAACATAGATTTCAGTTATATAGCTGGTTTATGCAAGGGTTACACTGGTTCAGATCTATTTGATCTTTGCAAGAAGGCCGCATATTTTCCTATTAGAGAAATACTGCATAATGAGAAGAAAGGGGAACAGTCCTGTGAACCTAGACCTTTGTCGCAGGCAGATTTGGAGAAGGCCCTTTCTACTTCGCGGAAGACATCGGTTGCTGCAAATGAATACAGTAGAATGACATCAAGAACGTCGTTTCATGGCGAGTCAGGTGATTCTCAGGTTGAAGCTGTAATCAGGGAATTATCTAAGATTATGGGGGTTTCTCACATCCAAGTAGATGCTCAGGATTAA
Protein sequence

>Msa1404720

MGGFSDTKVLQDLLLYAARAALSYWVLVTGLRYLDPNRESSKKALEQKKEIAKRLGRPLIQTNSYEDVIACDVINPDHIDVEFDSIGGLDTIKQTLFELVILPLQRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAHKLQPSIIFIDEVDSFLGQRRSSDHEAVLNMKTEFMALWDGFATDQSARVMVLAATNRPSELDEAILRRLPQAFEIGYPDRKERADILKVILKGEKVEDNIDFSYIAGLCKGYTGSDLFDLCKKAAYFPIREILHNEKKGEQSCEPRPLSQADLEKALSTSRKTSVAANEYSRMTSRTSFHGESGDSQVEAVIRELSKIMGVSHIQVDAQD*