AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0471790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471790 MtrunA17_Chr3g0127401 98.961 385 4 0 1 385 1 385 0.0 783
Msa0471790 MtrunA17_Chr3g0127431 81.921 354 63 1 5 358 8 360 0.0 595
Msa0471790 MtrunA17_Chr1g0195741 51.211 289 133 3 47 328 905 1192 2.89e-91 298
Msa0471790 MtrunA17_Chr1g0195731 51.211 289 133 3 47 328 901 1188 7.81e-91 296
Msa0471790 MtrunA17_Chr8g0387641 55.378 251 110 2 63 312 503 752 4.71e-90 289
Msa0471790 MtrunA17_Chr3g0116131 52.290 262 124 1 43 303 864 1125 4.34e-87 286
Msa0471790 MtrunA17_Chr4g0038101 45.062 324 164 4 41 359 690 1004 1.43e-85 280
Msa0471790 MtrunA17_Chr5g0397121 53.600 250 114 2 63 311 495 743 1.94e-85 276
Msa0471790 MtrunA17_Chr6g0462581 53.629 248 112 3 63 309 482 727 4.95e-82 267
Msa0471790 MtrunA17_Chr1g0202371 43.505 331 155 4 63 364 379 706 1.24e-79 258
Msa0471790 MtrunA17_Chr1g0202381 43.675 332 154 5 63 364 450 778 1.32e-77 254
Msa0471790 MtrunA17_Chr1g0204031 51.613 248 118 2 63 309 539 785 7.40e-76 251
Msa0471790 MtrunA17_Chr7g0246111 41.924 291 155 6 40 318 162 450 2.32e-62 208
Msa0471790 MtrunA17_Chr6g0459561 41.852 270 148 6 80 344 381 646 1.12e-56 196
Msa0471790 MtrunA17_Chr4g0052271 39.350 277 152 7 80 345 118 389 1.80e-55 187
Msa0471790 MtrunA17_Chr6g0459541 38.667 300 140 9 80 344 41 331 1.62e-52 178
Msa0471790 MtrunA17_Chr4g0004121 37.736 265 150 5 81 332 242 504 2.59e-50 176
Msa0471790 MtrunA17_Chr2g0321241 40.435 230 130 5 80 306 131 356 4.00e-49 171
Msa0471790 MtrunA17_Chr4g0026631 40.435 230 130 5 80 306 126 351 7.21e-48 168
Msa0471790 MtrunA17_Chr6g0459551 36.545 301 145 10 80 344 101 391 3.86e-46 163
Msa0471790 MtrunA17_Chr3g0145011 38.525 244 142 4 67 305 125 365 4.17e-46 162
Msa0471790 MtrunA17_Chr3g0141901 38.115 244 143 4 67 305 122 362 1.38e-45 161
Msa0471790 MtrunA17_Chr1g0180791 40.000 235 131 5 77 306 200 429 3.24e-45 166
Msa0471790 MtrunA17_Chr1g0180791 35.547 256 149 6 80 325 477 726 2.09e-43 161
Msa0471790 MtrunA17_Chr7g0264521 39.394 231 131 4 80 306 205 430 2.32e-44 164
Msa0471790 MtrunA17_Chr7g0264521 35.606 264 153 7 80 333 478 734 8.90e-44 162
Msa0471790 MtrunA17_Chr2g0327121 36.255 251 146 5 80 322 479 723 3.27e-44 163
Msa0471790 MtrunA17_Chr2g0327121 39.301 229 134 3 80 306 206 431 6.76e-43 159
Msa0471790 MtrunA17_Chr4g0050561 39.316 234 131 5 80 306 155 384 7.29e-43 154
Msa0471790 MtrunA17_Chr8g0345461 39.056 233 130 6 80 305 164 391 4.52e-42 152
Msa0471790 MtrunA17_Chr6g0459531 34.926 272 137 7 80 344 66 304 2.37e-40 145
Msa0471790 MtrunA17_Chr1g0200081 38.627 233 130 7 80 305 174 400 1.94e-39 145
Msa0471790 MtrunA17_Chr1g0192151 37.339 233 130 7 82 305 168 393 1.42e-38 143
Msa0471790 MtrunA17_Chr4g0014731 37.339 233 130 7 82 305 169 394 2.12e-38 142
Msa0471790 MtrunA17_Chr7g0262801 37.391 230 134 5 83 306 189 414 4.62e-37 139
Msa0471790 MtrunA17_Chr7g0255901 33.803 284 159 10 36 311 611 873 7.23e-37 142
Msa0471790 MtrunA17_Chr1g0182711 36.957 230 135 5 83 306 190 415 8.46e-37 138
Msa0471790 MtrunA17_Chr3g0108321 44.324 185 93 5 80 258 158 338 2.07e-36 136
Msa0471790 MtrunA17_Chr7g0255721 34.335 233 140 6 81 306 685 911 1.09e-35 139
Msa0471790 MtrunA17_Chr7g0255721 32.889 225 123 7 120 326 422 636 7.50e-27 112
Msa0471790 MtrunA17_Chr7g0255641 33.906 233 141 6 81 306 658 884 8.78e-35 136
Msa0471790 MtrunA17_Chr7g0255641 30.800 250 158 8 86 331 401 639 1.29e-23 103
Msa0471790 MtrunA17_Chr2g0277831 35.685 241 144 6 83 317 245 480 1.10e-34 135
Msa0471790 MtrunA17_Chr2g0277831 30.043 233 156 4 80 308 532 761 2.22e-33 132
Msa0471790 MtrunA17_Chr7g0260601 37.815 238 126 8 81 305 240 468 1.95e-34 134
Msa0471790 MtrunA17_Chr4g0033451 37.295 244 138 8 74 306 371 610 2.01e-34 135
Msa0471790 MtrunA17_Chr7g0217421 37.768 233 130 6 81 305 39 264 7.89e-34 129
Msa0471790 MtrunA17_Chr6g0456351 36.752 234 140 4 76 305 312 541 5.98e-33 130
Msa0471790 MtrunA17_Chr4g0052411 32.573 307 177 9 78 368 226 518 6.81e-33 130
Msa0471790 MtrunA17_Chr7g0248361 38.494 239 123 10 81 305 192 420 7.08e-33 130
Msa0471790 MtrunA17_Chr2g0289231 31.615 291 177 8 80 357 296 577 9.87e-33 129
Msa0471790 MtrunA17_Chr7g0255651 35.021 237 150 3 81 314 282 517 1.03e-32 129
Msa0471790 MtrunA17_Chr7g0255651 33.790 219 131 7 94 305 30 241 1.07e-21 97.1
Msa0471790 MtrunA17_Chr4g0043381 32.342 269 173 6 83 348 839 1101 1.75e-32 129
Msa0471790 MtrunA17_Chr3g0143721 33.119 311 174 13 81 379 249 537 2.13e-32 129
Msa0471790 MtrunA17_Chr5g0432631 33.681 288 170 8 80 363 228 498 4.92e-32 128
Msa0471790 MtrunA17_Chr3g0135761 32.827 329 178 10 44 363 197 491 5.70e-32 127
Msa0471790 MtrunA17_Chr4g0031821 36.402 239 128 9 81 305 320 548 7.59e-32 127
Msa0471790 MtrunA17_Chr6g0476861 37.238 239 126 9 81 305 197 425 1.33e-31 126
Msa0471790 MtrunA17_Chr2g0297281 35.622 233 135 6 81 305 286 511 1.64e-31 126
Msa0471790 MtrunA17_Chr3g0135721 33.449 287 170 8 81 363 224 493 3.62e-31 125
Msa0471790 MtrunA17_Chr2g0316851 32.075 265 158 8 83 330 596 855 8.27e-31 124
Msa0471790 MtrunA17_Chr3g0086411 29.719 249 152 5 80 308 214 459 4.86e-30 120
Msa0471790 MtrunA17_Chr3g0086411 29.936 157 100 4 170 317 7 162 2.26e-12 68.2
Msa0471790 MtrunA17_Chr3g0094871 34.894 235 136 8 81 305 11 238 6.80e-30 119
Msa0471790 MtrunA17_Chr7g0255691 34.127 252 151 5 81 320 286 534 2.39e-29 119
Msa0471790 MtrunA17_Chr7g0255691 36.726 226 127 8 84 299 20 239 1.15e-27 114
Msa0471790 MtrunA17_Chr1g0158881 33.681 288 163 10 83 363 331 597 3.38e-29 119
Msa0471790 MtrunA17_Chr2g0327231 39.286 168 90 4 80 241 345 506 3.85e-29 118
Msa0471790 MtrunA17_Chr2g0327231 39.362 94 48 3 80 171 152 238 2.14e-11 65.5
Msa0471790 MtrunA17_Chr5g0429571 36.402 239 130 8 81 306 313 542 9.76e-29 118
Msa0471790 MtrunA17_Chr3g0104211 36.820 239 129 8 81 306 304 533 1.57e-28 117
Msa0471790 MtrunA17_Chr8g0362771 31.959 291 172 10 80 363 236 507 2.04e-28 117
Msa0471790 MtrunA17_Chr8g0388371 34.310 239 140 5 81 306 404 638 2.40e-28 117
Msa0471790 MtrunA17_Chr2g0331161 30.992 242 140 7 79 306 413 641 4.56e-28 116
Msa0471790 MtrunA17_Chr3g0086401 32.922 243 136 7 80 299 384 622 5.75e-28 115
Msa0471790 MtrunA17_Chr3g0086401 30.233 215 135 6 104 308 116 325 1.61e-20 93.6
Msa0471790 MtrunA17_Chr3g0129971 35.246 244 133 9 81 308 296 530 4.11e-27 113
Msa0471790 MtrunA17_Chr5g0432641 32.154 311 181 11 62 363 171 460 1.07e-26 112
Msa0471790 MtrunA17_Chr3g0135781 38.788 165 93 4 80 242 54 212 1.31e-22 94.7
Msa0471790 MtrunA17_Chr8g0357301 33.333 201 111 7 120 305 507 699 3.93e-22 98.6
Msa0471790 MtrunA17_Chr1g0190401 27.178 287 152 12 13 262 594 860 1.79e-18 87.8
Msa0471790 MtrunA17_Chr4g0047411 31.280 211 116 8 120 308 214 417 1.34e-17 84.7
Msa0471790 MtrunA17_Chr5g0404291 36.735 147 80 6 117 258 386 524 2.41e-15 77.8
Msa0471790 MtrunA17_Chr1g0168321 37.086 151 77 7 167 305 211 355 4.09e-15 76.6
Msa0471790 MtrunA17_Chr6g0450161 32.911 158 87 4 117 266 361 507 7.98e-15 76.3
Msa0471790 MtrunA17_Chr4g0062081 48.750 80 35 3 86 162 12 88 3.07e-14 68.2
Msa0471790 MtrunA17_Chr4g0039781 34.810 158 84 6 117 266 367 513 3.69e-14 73.9
Msa0471790 MtrunA17_Chr1g0204051 35.526 76 48 1 210 285 1 75 3.38e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471790 AT4G27680.1 75.452 387 93 1 1 385 1 387 0.0 605
Msa0471790 AT5G53540.1 71.503 386 107 2 3 385 6 391 0.0 569
Msa0471790 AT4G02480.1 54.373 263 118 2 47 308 927 1188 2.75e-91 298
Msa0471790 AT1G02890.1 52.593 270 127 1 45 313 905 1174 2.87e-91 298
Msa0471790 AT4G24860.4 53.025 281 126 2 59 333 768 1048 4.62e-90 293
Msa0471790 AT1G64110.1 54.980 251 111 2 63 312 495 744 7.16e-90 288
Msa0471790 AT1G64110.5 54.980 251 111 2 63 312 498 747 7.26e-90 288
Msa0471790 AT1G64110.3 54.980 251 111 2 63 312 498 747 7.26e-90 288
Msa0471790 AT1G64110.2 54.980 251 111 2 63 312 500 749 7.30e-90 288
Msa0471790 AT1G64110.4 54.980 251 111 2 63 312 500 749 7.30e-90 288
Msa0471790 AT4G24860.1 53.025 281 126 2 59 333 795 1075 9.43e-90 293
Msa0471790 AT4G24860.3 53.025 281 126 2 59 333 793 1073 1.06e-89 293
Msa0471790 AT4G24860.2 53.025 281 126 2 59 333 791 1071 1.07e-89 293
Msa0471790 AT3G19740.1 45.427 328 172 4 39 359 657 984 1.30e-85 280
Msa0471790 AT1G50140.2 51.953 256 122 1 60 314 668 923 5.41e-85 278
Msa0471790 AT1G50140.5 51.953 256 122 1 60 314 668 923 5.41e-85 278
Msa0471790 AT1G50140.3 51.953 256 122 1 60 314 690 945 7.29e-85 278
Msa0471790 AT1G50140.1 51.953 256 122 1 60 314 690 945 7.29e-85 278
Msa0471790 AT1G50140.4 51.953 256 122 1 60 314 690 945 7.29e-85 278
Msa0471790 AT5G52882.1 51.894 264 124 3 59 321 492 753 5.52e-84 273
Msa0471790 AT4G28000.3 49.825 285 133 4 63 346 499 774 1.48e-83 271
Msa0471790 AT4G28000.2 49.825 285 133 4 63 346 499 774 3.52e-83 271
Msa0471790 AT4G28000.1 49.825 285 133 4 63 346 497 772 3.59e-83 270
Msa0471790 AT1G62130.2 47.445 274 130 3 39 312 704 963 1.84e-72 244
Msa0471790 AT1G62130.1 47.445 274 130 3 39 312 711 970 2.06e-72 244
Msa0471790 AT1G02890.2 45.926 270 117 2 45 313 905 1146 5.94e-71 241
Msa0471790 AT2G45500.4 44.488 254 131 5 63 310 59 308 8.43e-65 211
Msa0471790 AT2G45500.3 44.488 254 131 5 63 310 59 308 8.43e-65 211
Msa0471790 AT2G45500.2 44.488 254 131 5 63 310 192 441 3.27e-63 210
Msa0471790 AT2G45500.1 44.488 254 131 5 63 310 196 445 3.47e-63 210
Msa0471790 AT2G45500.5 44.488 254 131 5 63 310 202 451 6.80e-63 209
Msa0471790 AT2G34560.1 36.741 313 173 8 38 339 66 364 9.34e-56 188
Msa0471790 AT3G27120.1 44.828 232 122 4 80 308 399 627 1.34e-55 194
Msa0471790 AT2G34560.2 36.741 313 173 8 38 339 75 373 1.58e-55 187
Msa0471790 AT1G80350.1 37.358 265 151 5 81 332 236 498 8.25e-50 176
Msa0471790 AT5G43010.1 38.934 244 141 4 67 305 122 362 2.99e-47 166
Msa0471790 AT1G45000.1 38.934 244 141 4 67 305 122 362 4.13e-47 166
Msa0471790 AT2G27600.1 34.589 292 154 7 80 338 128 415 1.26e-46 165
Msa0471790 AT3G09840.1 39.827 231 130 4 80 306 203 428 3.89e-45 166
Msa0471790 AT3G09840.1 35.019 257 150 6 80 325 476 726 2.12e-42 158
Msa0471790 AT5G03340.1 39.394 231 131 4 80 306 203 428 1.43e-44 164
Msa0471790 AT5G03340.1 36.905 252 141 6 80 319 476 721 1.73e-44 164
Msa0471790 AT3G53230.1 38.961 231 132 4 80 306 204 429 8.95e-44 162
Msa0471790 AT3G53230.1 35.918 245 143 5 80 316 477 715 2.23e-42 158
Msa0471790 AT5G19990.1 39.316 234 131 5 80 306 157 386 1.41e-42 154
Msa0471790 AT5G19990.3 39.316 234 131 5 80 306 157 386 1.41e-42 154
Msa0471790 AT5G19990.2 39.316 234 131 5 80 306 99 328 1.70e-42 152
Msa0471790 AT5G20000.1 39.316 234 131 5 80 306 157 386 1.83e-42 154
Msa0471790 AT1G53750.1 39.056 233 130 6 80 305 164 391 8.77e-42 152
Msa0471790 AT5G58290.1 37.768 233 135 5 80 306 151 379 4.47e-40 147
Msa0471790 AT3G05530.1 37.339 233 130 7 82 305 169 394 1.26e-38 143
Msa0471790 AT1G53780.3 38.197 233 130 6 80 304 335 561 1.40e-38 146
Msa0471790 AT1G53780.1 38.197 233 130 6 80 304 336 562 1.48e-38 146
Msa0471790 AT1G53780.4 38.197 233 130 6 80 304 336 562 1.48e-38 146
Msa0471790 AT1G53780.2 38.197 233 130 6 80 304 357 583 1.77e-38 146
Msa0471790 AT3G56690.1 35.714 238 142 6 81 312 721 953 1.36e-37 145
Msa0471790 AT3G56690.1 29.582 311 203 6 2 308 310 608 5.54e-35 137
Msa0471790 AT1G09100.1 36.910 233 131 7 82 305 168 393 2.56e-37 140
Msa0471790 AT1G03000.1 34.000 250 156 7 76 319 650 896 1.74e-36 141
Msa0471790 AT4G29040.1 36.522 230 136 5 83 306 187 412 3.92e-36 137
Msa0471790 AT2G20140.1 36.522 230 136 5 83 306 187 412 9.65e-36 136
Msa0471790 AT1G05910.1 36.864 236 136 7 80 306 377 608 7.25e-35 137
Msa0471790 AT5G15250.1 37.712 236 126 8 81 305 221 446 6.15e-34 133
Msa0471790 AT1G06430.1 37.288 236 133 6 78 305 214 442 1.52e-33 132
Msa0471790 AT1G06430.3 37.288 236 133 6 78 305 214 442 1.52e-33 132
Msa0471790 AT1G06430.2 37.288 236 133 6 78 305 214 442 1.52e-33 132
Msa0471790 AT3G01610.2 33.610 241 149 5 80 315 524 758 1.70e-33 132
Msa0471790 AT3G01610.2 35.223 247 144 6 83 317 232 474 7.93e-33 130
Msa0471790 AT2G30950.4 37.339 233 131 6 81 305 228 453 1.87e-33 132
Msa0471790 AT2G30950.1 37.339 233 131 6 81 305 224 449 1.89e-33 132
Msa0471790 AT2G30950.2 37.339 233 131 6 81 305 224 449 1.89e-33 132
Msa0471790 AT2G30950.3 37.339 233 131 6 81 305 224 449 1.89e-33 132
Msa0471790 AT3G01610.1 33.610 241 149 5 80 315 524 758 1.90e-33 132
Msa0471790 AT3G01610.1 35.223 247 144 6 83 317 232 474 8.24e-33 130
Msa0471790 AT5G42270.1 33.548 310 174 12 81 379 247 535 2.50e-33 132
Msa0471790 AT1G50250.1 33.548 310 174 12 81 379 259 547 5.07e-33 131
Msa0471790 AT5G08470.3 33.086 269 171 6 83 348 834 1096 6.48e-33 131
Msa0471790 AT5G08470.1 33.086 269 171 6 83 348 843 1105 7.49e-33 130
Msa0471790 AT2G29080.1 37.553 237 127 8 81 305 319 546 4.86e-32 128
Msa0471790 AT1G07510.1 36.820 239 127 9 81 305 324 552 1.07e-31 127
Msa0471790 AT3G02450.1 36.364 231 135 6 81 305 331 555 1.48e-31 126
Msa0471790 AT2G26140.1 33.798 287 169 8 81 363 224 493 1.84e-31 126
Msa0471790 AT2G03670.2 35.426 223 131 7 86 299 24 242 9.12e-31 122
Msa0471790 AT2G03670.2 36.842 114 71 1 81 194 283 395 1.74e-12 68.9
Msa0471790 AT5G58870.1 36.626 243 132 8 77 306 322 555 1.27e-30 124
Msa0471790 AT5G15250.2 34.483 261 123 9 81 305 221 469 1.79e-30 122
Msa0471790 AT4G04180.1 31.174 247 149 6 80 314 315 552 3.05e-30 122
Msa0471790 AT4G04180.2 31.174 247 149 6 80 314 310 547 3.25e-30 122
Msa0471790 AT2G03670.1 35.426 223 131 7 86 299 24 242 4.24e-30 122
Msa0471790 AT2G03670.1 32.174 230 151 3 81 306 283 511 2.87e-26 110
Msa0471790 AT5G53170.1 32.653 294 176 9 74 363 352 627 1.70e-29 120
Msa0471790 AT3G47060.1 34.959 246 138 8 81 313 322 558 7.75e-29 119
Msa0471790 AT4G23940.1 34.959 246 136 7 81 310 427 664 1.55e-28 118
Msa0471790 AT3G15120.1 31.667 240 147 7 83 308 718 954 3.16e-28 117
Msa0471790 AT3G15120.2 31.667 240 147 7 83 308 728 964 3.19e-28 117
Msa0471790 AT3G16290.1 30.992 242 140 7 79 306 405 633 1.10e-26 112
Msa0471790 AT1G45000.2 38.562 153 90 2 67 216 122 273 3.12e-26 108
Msa0471790 AT1G79560.3 35.644 202 107 7 120 306 527 720 8.63e-26 110
Msa0471790 AT1G79560.1 35.644 202 107 7 120 306 527 720 8.87e-26 110
Msa0471790 AT1G79560.2 35.644 202 107 7 120 306 527 720 9.40e-26 110
Msa0471790 AT5G64580.1 34.568 243 136 9 81 308 313 547 1.35e-25 109
Msa0471790 AT3G04340.1 31.658 199 117 8 73 262 776 964 6.04e-17 83.6
Msa0471790 AT5G08470.2 34.161 161 100 5 83 242 843 998 1.28e-16 82.4
Msa0471790 AT4G04910.1 30.806 211 117 8 120 308 251 454 1.31e-16 82.0
Msa0471790 AT5G16930.1 34.969 163 77 7 118 267 397 543 1.85e-14 75.5
Msa0471790 AT2G18330.1 32.877 146 87 4 117 258 383 521 2.38e-14 75.1
Msa0471790 AT3G03060.1 32.075 159 89 4 117 267 384 531 2.73e-14 74.7
Msa0471790 AT4G36580.1 32.877 146 87 4 117 258 380 518 1.87e-13 72.4

Find 135 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCTCAAGCCTTTGAAAT+TGG 0.177781 3_3:-74184077 Msa0471790:CDS
ATATATCAGCCCTCTCTTTC+CGG 0.226986 3_3:+74184045 None:intergenic
CAGGGAATTATCTAAGATTA+TGG 0.229656 3_3:-74183388 Msa0471790:CDS
TATATTGAAGGTTATCTTAA+AGG 0.231299 3_3:-74184027 Msa0471790:CDS
CAACACACTTACCAAGCTTT+TGG 0.251388 3_3:+74187442 None:intergenic
ACCTTTGTCGCAGGCAGATT+TGG 0.252995 3_3:-74183526 Msa0471790:CDS
AGTGTATAATAATACAAGTT+TGG 0.261791 3_3:+74183253 None:intergenic
CTAGGGCGGCGCTAAGTTAC+TGG 0.265505 3_3:-74188355 Msa0471790:CDS
ATGTAGAATTTGACTCTATT+GGG 0.269048 3_3:-74187692 Msa0471790:CDS
CCCCAAACCATTTGCTCATC+AGG 0.271211 3_3:+74187469 None:intergenic
ACCTGATGAGCAAATGGTTT+GGG 0.311167 3_3:-74187470 Msa0471790:CDS
TTATGCAGTATTTCTCTAAT+AGG 0.315812 3_3:+74183900 None:intergenic
AAGTAATTGCGGTTGCAATC+TGG 0.316109 3_3:+74183294 None:intergenic
GATGTAGAATTTGACTCTAT+TGG 0.317232 3_3:-74187693 Msa0471790:CDS
AAACTGAGTTCATGGCTCTA+TGG 0.320401 3_3:-74184312 Msa0471790:CDS
CTCAGGTTGAAGCTGTAATC+AGG 0.341431 3_3:-74183407 Msa0471790:CDS
ACATCAAGAACGTCGTTTCA+TGG 0.355841 3_3:-74183444 Msa0471790:CDS
AAACATGAAAACTGAGTTCA+TGG 0.362291 3_3:-74184320 Msa0471790:CDS
TACTTCATCGATGAATATAA+TGG 0.362913 3_3:+74184390 None:intergenic
AATGGGTACCTCATAGGAAT+TGG 0.365618 3_3:+74188223 None:intergenic
TTCTTCGATGATTCACGGTT+CGG 0.366779 3_3:+74188302 None:intergenic
AAAACAAGTCTGGTCGTTGC+AGG 0.370845 3_3:+74187622 None:intergenic
TCTTCGATGATTCACGGTTC+GGG 0.377468 3_3:+74188303 None:intergenic
AAAGCTATTGCCAAGGAGTC+TGG 0.379922 3_3:-74187522 Msa0471790:CDS
TTGTATGGACCTCCTGGCAC+TGG 0.386661 3_3:-74187561 Msa0471790:CDS
ACGTCGTTTCATGGCGAGTC+AGG 0.388975 3_3:-74183435 Msa0471790:CDS
TAGGAATTGGTTTGAATAAG+AGG 0.390998 3_3:+74188236 None:intergenic
CAAACTTCTTGGACCACAAA+AGG 0.392804 3_3:-74187592 Msa0471790:CDS
TGTAGAGAGTGCTCGGGTTA+TGG 0.397237 3_3:-74184153 Msa0471790:intron
TTTAATCCTGAGCATCTACT+TGG 0.407390 3_3:+74183352 None:intergenic
ATATTGAAGGTTATCTTAAA+GGG 0.410430 3_3:-74184026 Msa0471790:CDS
TGCAACCGCAATTACTTCCT+TGG 0.410829 3_3:-74183288 Msa0471790:three_prime_UTR
TCGAAATTTGAAGTTAAAGT+TGG 0.411898 3_3:+74188459 None:intergenic
GTGTATAATAATACAAGTTT+GGG 0.426349 3_3:+74183254 None:intergenic
AACCTGATGAGCAAATGGTT+TGG 0.428222 3_3:-74187471 Msa0471790:CDS
CACGGTTCGGGTCGAGATAA+CGG 0.430729 3_3:+74188315 None:intergenic
AGGGAATTATCTAAGATTAT+GGG 0.432152 3_3:-74183387 Msa0471790:CDS
TCGTTCGTTCGTTCGTTCAA+AGG 0.433188 3_3:-74188432 Msa0471790:five_prime_UTR
AGTAATTGCGGTTGCAATCT+GGG 0.435060 3_3:+74183295 None:intergenic
GTATCCAACCACCGAATTTG+TGG 0.435521 3_3:+74188495 None:intergenic
AAACTTCTTGGACCACAAAA+GGG 0.435723 3_3:-74187591 Msa0471790:CDS
GAGCCTTCTTCGATGATTCA+CGG 0.446293 3_3:+74188297 None:intergenic
AATGCAGTATTATCTGTTGC+AGG 0.449995 3_3:-74183049 Msa0471790:three_prime_UTR
TCCAAATCTGCCTGCGACAA+AGG 0.458633 3_3:+74183525 None:intergenic
CTTTATTTATGATTGTTGTT+CGG 0.460836 3_3:-74183145 Msa0471790:three_prime_UTR
ATGTCTTCCGCGAAGTAGAA+AGG 0.461125 3_3:+74183496 None:intergenic
GTTCTGTTGTATGGACCTCC+TGG 0.464854 3_3:-74187567 Msa0471790:CDS
TTCGCGTAAGTTTCTGAGGT+GGG 0.468999 3_3:+74188602 None:intergenic
CATGGTACAATATCAAAAGT+AGG 0.470098 3_3:+74183097 None:intergenic
ATAGATTTCAGTTATATAGC+TGG 0.470990 3_3:-74183984 Msa0471790:CDS
TCAGCCCTCTCTTTCCGGTC+TGG 0.471982 3_3:+74184050 None:intergenic
TACTGCATAATGAGAAGAAA+GGG 0.472605 3_3:-74183887 Msa0471790:CDS
TCACATCCAAGTAGATGCTC+AGG 0.475230 3_3:-74183358 Msa0471790:CDS
TGGCGAGTCAGGTGATTCTC+AGG 0.479528 3_3:-74183424 Msa0471790:CDS
AGTGGCTGCCGTATTTAGCT+TGG 0.481021 3_3:-74184431 Msa0471790:CDS
TCTATTTGATCTTTGCAAGA+AGG 0.483151 3_3:-74183934 Msa0471790:CDS
TATCAAACCTGATGAGCAAA+TGG 0.483375 3_3:-74187476 Msa0471790:CDS
GTTGTTGTGTAGAGAGTGCT+CGG 0.484415 3_3:-74184160 Msa0471790:intron
CCCTAGCCGCGTATAACAAC+AGG 0.485855 3_3:+74188372 None:intergenic
GAAAACTGCTCCAGACTCCT+TGG 0.486780 3_3:+74187512 None:intergenic
AATTCTACATCGATGTGGTC+AGG 0.489405 3_3:+74187705 None:intergenic
GTTCGTTCGTTCAAAGGACA+TGG 0.493707 3_3:-74188426 Msa0471790:exon
TATTCAAACCAATTCCTATG+AGG 0.495023 3_3:-74188231 Msa0471790:intron
TGCATGAAATTCTGAGCTAA+AGG 0.497231 3_3:+74183208 None:intergenic
TCTGCCTGCGACAAAGGTCT+AGG 0.503149 3_3:+74183531 None:intergenic
ATACTGCATAATGAGAAGAA+AGG 0.503244 3_3:-74183888 Msa0471790:CDS
GAGACCACAAATTCGGTGGT+TGG 0.507880 3_3:-74188499 Msa0471790:five_prime_UTR
AAAGAGATTGCTAAACGTCT+TGG 0.508962 3_3:-74188263 Msa0471790:CDS
TTTGGGGATGCCCAAAAGCT+TGG 0.509153 3_3:-74187453 Msa0471790:intron
TTGCCATGCGAAAACAAGTC+TGG 0.509217 3_3:+74187612 None:intergenic
ATGGTACAATATCAAAAGTA+GGG 0.510191 3_3:+74183098 None:intergenic
GGCGCTAAGTTACTGGGTAT+TGG 0.511795 3_3:-74188348 Msa0471790:CDS
AACTGAGTTCATGGCTCTAT+GGG 0.515199 3_3:-74184311 Msa0471790:CDS
AAGTTACTGGGTATTGGTCA+CGG 0.526475 3_3:-74188342 Msa0471790:CDS
GGGAATTATCTAAGATTATG+GGG 0.530906 3_3:-74183386 Msa0471790:CDS
TATATAGCTGGTTTATGCAA+GGG 0.532236 3_3:-74183972 Msa0471790:CDS
TTTATGAGCCAAGCTAAATA+CGG 0.532998 3_3:+74184423 None:intergenic
AGAGAGGGCTGATATATTGA+AGG 0.534415 3_3:-74184039 Msa0471790:CDS
TTCTGAGCTAAAGGCAACAC+TGG 0.534510 3_3:+74183217 None:intergenic
GAACCGTGAATCATCGAAGA+AGG 0.537058 3_3:-74188300 Msa0471790:CDS
TCCTTTCGCGTAAGTTTCTG+AGG 0.538081 3_3:+74188598 None:intergenic
TTCTACTTCGCGGAAGACAT+CGG 0.539207 3_3:-74183493 Msa0471790:CDS
AATTTGACTGCATCATATCA+TGG 0.539356 3_3:+74183079 None:intergenic
GGTTTATGCAAGGGTTACAC+TGG 0.540877 3_3:-74183963 Msa0471790:CDS
TGTCTTCCGCGAAGTAGAAA+GGG 0.540884 3_3:+74183497 None:intergenic
GTCAGGATTTATAACATCAC+AGG 0.543896 3_3:+74187722 None:intergenic
AGTTACTGGGTATTGGTCAC+GGG 0.546408 3_3:-74188341 Msa0471790:CDS
TTGAAATTGGATATCCAGAC+CGG 0.547953 3_3:-74184064 Msa0471790:CDS
TTATATAGCTGGTTTATGCA+AGG 0.548540 3_3:-74183973 Msa0471790:CDS
GTCTGGATATCCAATTTCAA+AGG 0.556914 3_3:+74184067 None:intergenic
TAAATAAAGTCTAGTATACA+TGG 0.557154 3_3:+74183159 None:intergenic
TGTAGAATTTGACTCTATTG+GGG 0.558850 3_3:-74187691 Msa0471790:CDS
ATTGCTTCATCAAGTTCTGA+AGG 0.564553 3_3:+74184110 None:intergenic
CCTGTTGTTATACGCGGCTA+GGG 0.564962 3_3:-74188372 Msa0471790:CDS
GGTTATCTTAAAGGGCGAGA+AGG 0.568954 3_3:-74184018 Msa0471790:CDS
ACCTGTTGTTATACGCGGCT+AGG 0.569819 3_3:-74188373 Msa0471790:CDS
TTTCGCGTAAGTTTCTGAGG+TGG 0.571830 3_3:+74188601 None:intergenic
AAACAAGTCTGGTCGTTGCA+GGG 0.572120 3_3:+74187623 None:intergenic
GAGTTCATGGCTCTATGGGA+TGG 0.573516 3_3:-74184307 Msa0471790:CDS
GTCGCAGGCAGATTTGGAGA+AGG 0.576617 3_3:-74183520 Msa0471790:CDS
TATCCAATTTCAAAGGCTTG+AGG 0.578118 3_3:+74184074 None:intergenic
AACTTCTTGGACCACAAAAG+GGG 0.581082 3_3:-74187590 Msa0471790:CDS
TAGGGCGGCGCTAAGTTACT+GGG 0.582080 3_3:-74188354 Msa0471790:CDS
TTCGTTCGTTCAAAGGACAT+GGG 0.587190 3_3:-74188425 Msa0471790:exon
TCATCGATGAATATAATGGA+TGG 0.591454 3_3:+74184394 None:intergenic
GGAACCTAGACCTTTGTCGC+AGG 0.591455 3_3:-74183535 Msa0471790:CDS
TTCGGAGACCACAAATTCGG+TGG 0.591564 3_3:-74188503 Msa0471790:five_prime_UTR
TCAGGTTGAAGCTGTAATCA+GGG 0.595334 3_3:-74183406 Msa0471790:CDS
ACCTCAGAAACTTACGCGAA+AGG 0.600996 3_3:-74188599 Msa0471790:five_prime_UTR
AACAAGTCTGGTCGTTGCAG+GGG 0.601495 3_3:+74187624 None:intergenic
TGTATGGACCTCCTGGCACT+GGG 0.603811 3_3:-74187560 Msa0471790:CDS
AGAAGGCCCTTTCTACTTCG+CGG 0.604409 3_3:-74183503 Msa0471790:CDS
GATATCCAGACCGGAAAGAG+AGG 0.613846 3_3:-74184055 Msa0471790:CDS
AATAACCAAGGAAGTAATTG+CGG 0.616781 3_3:+74183283 None:intergenic
TAATATTCAATCAATACTTG+CGG 0.621882 3_3:+74188559 None:intergenic
AACTTGATGAAGCAATACTT+CGG 0.627940 3_3:-74184103 Msa0471790:CDS
GTTGTTATACGCGGCTAGGG+CGG 0.629884 3_3:-74188369 Msa0471790:CDS
TTGCTTCATCAAGTTCTGAA+GGG 0.630399 3_3:+74184111 None:intergenic
GGAATTATCTAAGATTATGG+GGG 0.631503 3_3:-74183385 Msa0471790:CDS
TTCTCTAATAGGAAAATATG+CGG 0.632360 3_3:+74183911 None:intergenic
GCGTCGTTCATCAGATCATG+AGG 0.633325 3_3:-74184350 Msa0471790:CDS
TTGTGGTCTCCGAAAATCGA+GGG 0.634586 3_3:+74188512 None:intergenic
GTTCGTTCAAAGGACATGGG+AGG 0.635319 3_3:-74188422 Msa0471790:exon
ACTTCTTGGACCACAAAAGG+GGG 0.638715 3_3:-74187589 Msa0471790:CDS
GCTCGCAAAAGCTATTGCCA+AGG 0.654543 3_3:-74187529 Msa0471790:CDS
ACAAGACCTGTTGTTATACG+CGG 0.658412 3_3:-74188378 Msa0471790:CDS
ATATCCAGACCGGAAAGAGA+GGG 0.660218 3_3:-74184054 Msa0471790:CDS
TTTGGGAACTAGAATAACCA+AGG 0.669935 3_3:+74183271 None:intergenic
TTGTTGTGTAGAGAGTGCTC+GGG 0.671596 3_3:-74184159 Msa0471790:intron
GTAGAATTTGACTCTATTGG+GGG 0.672250 3_3:-74187690 Msa0471790:CDS
ACTGCATAATGAGAAGAAAG+GGG 0.674597 3_3:-74183886 Msa0471790:CDS
CCTGATGAGCAAATGGTTTG+GGG 0.676141 3_3:-74187469 Msa0471790:CDS
TTTGTGGTCTCCGAAAATCG+AGG 0.696009 3_3:+74188511 None:intergenic
AGTCAAATTCTACATCGATG+TGG 0.703743 3_3:+74187700 None:intergenic
GTACAATATCAAAAGTAGGG+CGG 0.723420 3_3:+74183101 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAAAAAAGTATTAAAAAAT+GGG + chr3_3:74183454-74183473 None:intergenic 10.0%
!!! ATGAAAAAAGTATTAAAAAA+TGG + chr3_3:74183455-74183474 None:intergenic 10.0%
!! AATTAAATCACTTAAATAAA+AGG + chr3_3:74183884-74183903 None:intergenic 10.0%
!! AATAAAAGGAAAAGTAATAT+TGG + chr3_3:74183870-74183889 None:intergenic 15.0%
!!! CATGATCAAAATATTTTTTT+TGG + chr3_3:74184344-74184363 None:intergenic 15.0%
!!! TAAATTTTTGCTAATACATA+TGG - chr3_3:74184367-74184386 Msa0471790:CDS 15.0%
!!! ACACTTATATTTTTCATAAA+AGG - chr3_3:74184421-74184440 Msa0471790:CDS 15.0%
!! TTATATATGATAGAACATTA+TGG - chr3_3:74185076-74185095 Msa0471790:intron 15.0%
!! TATTAAAGAAAAAGATCAAA+CGG + chr3_3:74185599-74185618 None:intergenic 15.0%
!!! TTTTATTAGCCAATAAAAAT+AGG + chr3_3:74186374-74186393 None:intergenic 15.0%
!!! ATTTTTATTGGCTAATAAAA+TGG - chr3_3:74186374-74186393 Msa0471790:intron 15.0%
!! ATTTGAAAATTGAAATAGAA+GGG - chr3_3:74186673-74186692 Msa0471790:intron 15.0%
!!! TTATTTATTTTTCACATTTC+AGG - chr3_3:74188101-74188120 Msa0471790:intron 15.0%
!! TAATATTCAATCAATACTTG+CGG + chr3_3:74183101-74183120 None:intergenic 20.0%
!! TAATAAATTATGCTAGACTT+AGG + chr3_3:74183530-74183549 None:intergenic 20.0%
!! TAAGTCTAGCATAATTTATT+AGG - chr3_3:74183529-74183548 Msa0471790:CDS 20.0%
!! AAGTCTAGCATAATTTATTA+GGG - chr3_3:74183530-74183549 Msa0471790:CDS 20.0%
!!! CTTTTTCTAGCTTATATATA+GGG - chr3_3:74183745-74183764 Msa0471790:intron 20.0%
!!! GATCAAAATATTTTTTTTGG+TGG + chr3_3:74184341-74184360 None:intergenic 20.0%
!!! AGTTTCTCTTAAGTTTTTAT+TGG + chr3_3:74185015-74185034 None:intergenic 20.0%
!! AAACTTATTAAGATTGATCT+AGG - chr3_3:74185030-74185049 Msa0471790:intron 20.0%
!! AACTTATTAAGATTGATCTA+GGG - chr3_3:74185031-74185050 Msa0471790:intron 20.0%
!!! GTTTATTGATTACCTTAAAA+GGG - chr3_3:74185223-74185242 Msa0471790:intron 20.0%
!! TTTCTTTAATATTGTAACTG+TGG - chr3_3:74185608-74185627 Msa0471790:intron 20.0%
!!! AGCTATTTTTTTTATATCTG+TGG + chr3_3:74186053-74186072 None:intergenic 20.0%
!! AAACTATTGGAAATACAATT+AGG + chr3_3:74186260-74186279 None:intergenic 20.0%
!!! TTAGTTCAGTTTTAAAAAAG+TGG - chr3_3:74186425-74186444 Msa0471790:intron 20.0%
!! CAGTTCAAAACTATATAAAA+TGG - chr3_3:74186450-74186469 Msa0471790:intron 20.0%
!! CATTTGAAAATTGAAATAGA+AGG - chr3_3:74186672-74186691 Msa0471790:intron 20.0%
!!! TTTCTGAAAGAAGTTATTAT+TGG - chr3_3:74186778-74186797 Msa0471790:intron 20.0%
!! CTTATTATAGCAGTTAATAA+GGG - chr3_3:74187040-74187059 Msa0471790:intron 20.0%
!! TTGATAAATGAAACATAGTT+AGG + chr3_3:74187078-74187097 None:intergenic 20.0%
!! ACTTATATTGTATAATCAGT+CGG + chr3_3:74187104-74187123 None:intergenic 20.0%
!! TATATTGAAGGTTATCTTAA+AGG - chr3_3:74187630-74187649 Msa0471790:CDS 20.0%
!! ATATTGAAGGTTATCTTAAA+GGG - chr3_3:74187631-74187650 Msa0471790:CDS 20.0%
!! AATGAAAAATATACTAACAC+AGG + chr3_3:74187803-74187822 None:intergenic 20.0%
!! AATCAGACAAATATAACTTT+GGG + chr3_3:74187963-74187982 None:intergenic 20.0%
!! TAATCAGACAAATATAACTT+TGG + chr3_3:74187964-74187983 None:intergenic 20.0%
!! GTGTATAATAATACAAGTTT+GGG + chr3_3:74188406-74188425 None:intergenic 20.0%
!! AGTGTATAATAATACAAGTT+TGG + chr3_3:74188407-74188426 None:intergenic 20.0%
!! TAAATAAAGTCTAGTATACA+TGG + chr3_3:74188501-74188520 None:intergenic 20.0%
!!! CTTTATTTATGATTGTTGTT+CGG - chr3_3:74188512-74188531 Msa0471790:five_prime_UTR 20.0%
!! TCGAAATTTGAAGTTAAAGT+TGG + chr3_3:74183201-74183220 None:intergenic 25.0%
!! TTGAACCAATTTTCAATTGT+TGG - chr3_3:74183483-74183502 Msa0471790:CDS 25.0%
! TATCACCAACAATTGAAAAT+TGG + chr3_3:74183491-74183510 None:intergenic 25.0%
! CCTATATATAAGCTAGAAAA+AGG + chr3_3:74183747-74183766 None:intergenic 25.0%
!!! CCTTTTTCTAGCTTATATAT+AGG - chr3_3:74183744-74183763 Msa0471790:intron 25.0%
!! ATAGCCTTTGAAAACTAATA+CGG + chr3_3:74183778-74183797 None:intergenic 25.0%
! AAGCATAAAACTATCATATG+CGG - chr3_3:74183801-74183820 Msa0471790:intron 25.0%
! ATGTAGAATTTGACTCTATT+GGG - chr3_3:74183965-74183984 Msa0471790:CDS 25.0%
!!! CAAAATATTTTTTTTGGTGG+TGG + chr3_3:74184338-74184357 None:intergenic 25.0%
!! AAGGCACAATATATTTTGTA+TGG - chr3_3:74184754-74184773 Msa0471790:intron 25.0%
!! AGGCACAATATATTTTGTAT+GGG - chr3_3:74184755-74184774 Msa0471790:intron 25.0%
! TAATCAATAAACCAATCTCA+AGG + chr3_3:74185215-74185234 None:intergenic 25.0%
!! GGTTTATTGATTACCTTAAA+AGG - chr3_3:74185222-74185241 Msa0471790:intron 25.0%
! TTTCAATGAAGAACAACAAA+TGG + chr3_3:74185708-74185727 None:intergenic 25.0%
! AGAATCTCACAAGAAATATT+GGG + chr3_3:74185731-74185750 None:intergenic 25.0%
! GTATTCTTAACAAATGATGT+AGG - chr3_3:74186074-74186093 Msa0471790:intron 25.0%
! TGTCTTGTGAAATAATATGT+AGG - chr3_3:74186188-74186207 Msa0471790:intron 25.0%
! TTGGAAATACAATTAGGAAT+TGG + chr3_3:74186254-74186273 None:intergenic 25.0%
! AATAAAATGGACGTCATATT+AGG - chr3_3:74186387-74186406 Msa0471790:intron 25.0%
! ATAAAATGGACGTCATATTA+GGG - chr3_3:74186388-74186407 Msa0471790:intron 25.0%
! AAAGAAGTTATTATTGGAAC+TGG - chr3_3:74186784-74186803 Msa0471790:intron 25.0%
! CAACCAGAAAAAAACAATAA+GGG + chr3_3:74186869-74186888 None:intergenic 25.0%
! TCAACCAGAAAAAAACAATA+AGG + chr3_3:74186870-74186889 None:intergenic 25.0%
! GCTTATTATAGCAGTTAATA+AGG - chr3_3:74187039-74187058 Msa0471790:intron 25.0%
! CTTATATTGTATAATCAGTC+GGG + chr3_3:74187103-74187122 None:intergenic 25.0%
! TACTTCATCGATGAATATAA+TGG + chr3_3:74187270-74187289 None:intergenic 25.0%
! ACTACTTAAAAACTTACGAT+CGG + chr3_3:74187384-74187403 None:intergenic 25.0%
! ATAGATTTCAGTTATATAGC+TGG - chr3_3:74187673-74187692 Msa0471790:CDS 25.0%
! TTCTCTAATAGGAAAATATG+CGG + chr3_3:74187749-74187768 None:intergenic 25.0%
! TTATGCAGTATTTCTCTAAT+AGG + chr3_3:74187760-74187779 None:intergenic 25.0%
!!! TTGTTTTTTCATATCATGAG+CGG - chr3_3:74188053-74188072 Msa0471790:intron 25.0%
!! AGGGAATTATCTAAGATTAT+GGG - chr3_3:74188270-74188289 Msa0471790:CDS 25.0%
! ATGGTACAATATCAAAAGTA+GGG + chr3_3:74188562-74188581 None:intergenic 25.0%
!! TAGGAATTGGTTTGAATAAG+AGG + chr3_3:74183424-74183443 None:intergenic 30.0%
TATTCAAACCAATTCCTATG+AGG - chr3_3:74183426-74183445 Msa0471790:CDS 30.0%
TTAAAAAATGGGTACCTCAT+AGG + chr3_3:74183443-74183462 None:intergenic 30.0%
TTGAAAACTAATACGGAACA+TGG + chr3_3:74183771-74183790 None:intergenic 30.0%
!!! TGTTCCGTATTAGTTTTCAA+AGG - chr3_3:74183771-74183790 Msa0471790:intron 30.0%
!!! GCATATGATAGTTTTATGCT+TGG + chr3_3:74183802-74183821 None:intergenic 30.0%
AGCATAAAACTATCATATGC+GGG - chr3_3:74183802-74183821 Msa0471790:intron 30.0%
GATGTAGAATTTGACTCTAT+TGG - chr3_3:74183964-74183983 Msa0471790:CDS 30.0%
TGTAGAATTTGACTCTATTG+GGG - chr3_3:74183966-74183985 Msa0471790:CDS 30.0%
GACAATGCATAATATATGCA+AGG - chr3_3:74184293-74184312 Msa0471790:CDS 30.0%
!!! AGAAAGCATCGACAATTTTA+TGG + chr3_3:74184466-74184485 None:intergenic 30.0%
TACAGTGTGATTACAATAGT+TGG + chr3_3:74184515-74184534 None:intergenic 30.0%
! ATAGTTTCTTTTGCTGAGAA+GGG - chr3_3:74184675-74184694 Msa0471790:intron 30.0%
!! TGCTTGATTTATTTTCGTGT+TGG + chr3_3:74184804-74184823 None:intergenic 30.0%
ATAAGAATACTGTGCTTAAG+TGG - chr3_3:74184832-74184851 Msa0471790:intron 30.0%
AGAGGTTTACAAGCATAAAT+AGG + chr3_3:74185326-74185345 None:intergenic 30.0%
GGTTCGTTAGTTAATTAAAG+AGG + chr3_3:74185344-74185363 None:intergenic 30.0%
GATGTCATTCTCTTAATGTT+AGG + chr3_3:74185365-74185384 None:intergenic 30.0%
ATTATGATGTACGTTACTGT+AGG - chr3_3:74185487-74185506 Msa0471790:intron 30.0%
TTCTTCATATTCCATTTGCT+TGG - chr3_3:74185526-74185545 Msa0471790:intron 30.0%
TCTTCATATTCCATTTGCTT+GGG - chr3_3:74185527-74185546 Msa0471790:intron 30.0%
TTCTACTATAACCTTTGCTT+AGG + chr3_3:74185572-74185591 None:intergenic 30.0%
TATTGTAACTGTGGTCAATT+TGG - chr3_3:74185617-74185636 Msa0471790:intron 30.0%
ATTGTAACTGTGGTCAATTT+GGG - chr3_3:74185618-74185637 Msa0471790:intron 30.0%
! GATGTGGGTTTTTATATGTT+GGG + chr3_3:74185679-74185698 None:intergenic 30.0%
CAGAATCTCACAAGAAATAT+TGG + chr3_3:74185732-74185751 None:intergenic 30.0%
TTATTTCACAAGACAAAGCA+AGG + chr3_3:74186183-74186202 None:intergenic 30.0%
TGCACAGAAAACAAAACTAT+TGG + chr3_3:74186273-74186292 None:intergenic 30.0%
!!! TCTAGGGTTCCTATTTTTAT+TGG - chr3_3:74186362-74186381 Msa0471790:intron 30.0%
ATGGATAACAACCTTACATT+GGG - chr3_3:74186623-74186642 Msa0471790:intron 30.0%
TTCTTCCATCCATCTATTTA+AGG - chr3_3:74186704-74186723 Msa0471790:intron 30.0%
! ACGCTAGAAATTTTGTCAAA+TGG + chr3_3:74186730-74186749 None:intergenic 30.0%
TCTTTCAGAAATAGTGCATT+CGG + chr3_3:74186769-74186788 None:intergenic 30.0%
!!! TGGAACTGGTTTTTGAAATA+AGG - chr3_3:74186798-74186817 Msa0471790:intron 30.0%
TCCAGTTTAGAAAGAGTAAA+AGG - chr3_3:74186840-74186859 Msa0471790:intron 30.0%
! ACCTTTTACTCTTTCTAAAC+TGG + chr3_3:74186844-74186863 None:intergenic 30.0%
!!! TCTCCCTTATTGTTTTTTTC+TGG - chr3_3:74186863-74186882 Msa0471790:intron 30.0%
AGTGTATATATGCTTAGTGA+TGG - chr3_3:74186921-74186940 Msa0471790:intron 30.0%
TGTTGTTATAGAACCAATAC+AGG + chr3_3:74186952-74186971 None:intergenic 30.0%
!! ATGTGTGGTTATTTCTTTGA+AGG - chr3_3:74186984-74187003 Msa0471790:intron 30.0%
TAACTGCTATAATAAGCACT+TGG + chr3_3:74187036-74187055 None:intergenic 30.0%
TTTATGAGCCAAGCTAAATA+CGG + chr3_3:74187237-74187256 None:intergenic 30.0%
! TCATCGATGAATATAATGGA+TGG + chr3_3:74187266-74187285 None:intergenic 30.0%
!!! GATGAAGTAGACAGTTTTTT+GGG - chr3_3:74187281-74187300 Msa0471790:intron 30.0%
AAACATGAAAACTGAGTTCA+TGG - chr3_3:74187337-74187356 Msa0471790:intron 30.0%
AACTTGATGAAGCAATACTT+CGG - chr3_3:74187554-74187573 Msa0471790:CDS 30.0%
! TTATATAGCTGGTTTATGCA+AGG - chr3_3:74187684-74187703 Msa0471790:CDS 30.0%
! TATATAGCTGGTTTATGCAA+GGG - chr3_3:74187685-74187704 Msa0471790:CDS 30.0%
TCTATTTGATCTTTGCAAGA+AGG - chr3_3:74187723-74187742 Msa0471790:CDS 30.0%
ATACTGCATAATGAGAAGAA+AGG - chr3_3:74187769-74187788 Msa0471790:intron 30.0%
TACTGCATAATGAGAAGAAA+GGG - chr3_3:74187770-74187789 Msa0471790:intron 30.0%
CTGGGAAAATTCAAAAAACA+TGG + chr3_3:74187846-74187865 None:intergenic 30.0%
! AACAGCATATTTTCACTTCT+GGG + chr3_3:74187864-74187883 None:intergenic 30.0%
! AAACAGCATATTTTCACTTC+TGG + chr3_3:74187865-74187884 None:intergenic 30.0%
! CAGGGAATTATCTAAGATTA+TGG - chr3_3:74188269-74188288 Msa0471790:CDS 30.0%
! GGGAATTATCTAAGATTATG+GGG - chr3_3:74188271-74188290 Msa0471790:CDS 30.0%
! GGAATTATCTAAGATTATGG+GGG - chr3_3:74188272-74188291 Msa0471790:CDS 30.0%
AATAACCAAGGAAGTAATTG+CGG + chr3_3:74188377-74188396 None:intergenic 30.0%
CATGGTACAATATCAAAAGT+AGG + chr3_3:74188563-74188582 None:intergenic 30.0%
AATTTGACTGCATCATATCA+TGG + chr3_3:74188581-74188600 None:intergenic 30.0%
! AAGAAACATCCCTCGATTTT+CGG - chr3_3:74183136-74183155 Msa0471790:three_prime_UTR 35.0%
! ATTTTCGGAGACCACAAATT+CGG - chr3_3:74183151-74183170 Msa0471790:three_prime_UTR 35.0%
AAAGAGATTGCTAAACGTCT+TGG - chr3_3:74183394-74183413 Msa0471790:CDS 35.0%
AAATTATGCTAGACTTAGGC+AGG + chr3_3:74183526-74183545 None:intergenic 35.0%
! TTTATTAGGGATGAGAGCAT+AGG - chr3_3:74183543-74183562 Msa0471790:intron 35.0%
GAAAACTGCAGCACTAATTT+CGG - chr3_3:74183597-74183616 Msa0471790:intron 35.0%
AAAACTGCAGCACTAATTTC+GGG - chr3_3:74183598-74183617 Msa0471790:intron 35.0%
!!! TGGTTTTATGCAAAAACTCC+AGG + chr3_3:74183829-74183848 None:intergenic 35.0%
GGAGATAAGTTAGCATAGAA+TGG + chr3_3:74183849-74183868 None:intergenic 35.0%
GTCAGGATTTATAACATCAC+AGG + chr3_3:74183938-74183957 None:intergenic 35.0%
AGTCAAATTCTACATCGATG+TGG + chr3_3:74183960-74183979 None:intergenic 35.0%
GTAGAATTTGACTCTATTGG+GGG - chr3_3:74183967-74183986 Msa0471790:CDS 35.0%
AAACTTCTTGGACCACAAAA+GGG - chr3_3:74184066-74184085 Msa0471790:CDS 35.0%
! GAGCAGTTTTCATTAATGTG+AGG - chr3_3:74184157-74184176 Msa0471790:intron 35.0%
TATCAAACCTGATGAGCAAA+TGG - chr3_3:74184181-74184200 Msa0471790:intron 35.0%
! AACACACTTACCAAGCTTTT+GGG + chr3_3:74184217-74184236 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+CGG - chr3_3:74184298-74184317 Msa0471790:CDS 35.0%
TATGCGAGTGTATAAAAGCT+TGG - chr3_3:74184485-74184504 Msa0471790:intron 35.0%
AAAGAAACTATGTTGGTCGT+TGG + chr3_3:74184666-74184685 None:intergenic 35.0%
CTCAGCAAAAGAAACTATGT+TGG + chr3_3:74184673-74184692 None:intergenic 35.0%
! CATAGTTTCTTTTGCTGAGA+AGG - chr3_3:74184674-74184693 Msa0471790:intron 35.0%
TATATTGTGCCTTTACCACT+GGG + chr3_3:74184747-74184766 None:intergenic 35.0%
ATATATTGTGCCTTTACCAC+TGG + chr3_3:74184748-74184767 None:intergenic 35.0%
!!! AGTTTCCACCCTCTTTTTTA+CGG + chr3_3:74184890-74184909 None:intergenic 35.0%
TAAAAAAGAGGGTGGAAACT+AGG - chr3_3:74184890-74184909 Msa0471790:intron 35.0%
AGTAAGAAGAGTAGATCAGA+TGG - chr3_3:74184957-74184976 Msa0471790:intron 35.0%
! AAGCTAATTTGCCTTGAGAT+TGG - chr3_3:74185201-74185220 Msa0471790:intron 35.0%
ACAAGCATAAATAGGACACA+GGG + chr3_3:74185318-74185337 None:intergenic 35.0%
TACAAGCATAAATAGGACAC+AGG + chr3_3:74185319-74185338 None:intergenic 35.0%
TGTACGTTACTGTAGGAATA+TGG - chr3_3:74185494-74185513 Msa0471790:intron 35.0%
! GGATGTGGGTTTTTATATGT+TGG + chr3_3:74185680-74185699 None:intergenic 35.0%
ACATATAAAAACCCACATCC+AGG - chr3_3:74185680-74185699 Msa0471790:intron 35.0%
TGATCGTGAAAAAGGTTAAC+AGG + chr3_3:74185867-74185886 None:intergenic 35.0%
CGTGAATCAAGATTGTAAGA+AGG - chr3_3:74185891-74185910 Msa0471790:intron 35.0%
!!! TGTGATGGCAGAGATTTTTT+GGG + chr3_3:74185961-74185980 None:intergenic 35.0%
!!! ATGTGATGGCAGAGATTTTT+TGG + chr3_3:74185962-74185981 None:intergenic 35.0%
ATAGATGAAGTAGCATGTGA+TGG + chr3_3:74185976-74185995 None:intergenic 35.0%
GAATGTCACATGTAACATTG+TGG + chr3_3:74186020-74186039 None:intergenic 35.0%
CAATGTTACATGTGACATTC+AGG - chr3_3:74186020-74186039 Msa0471790:intron 35.0%
ACAATAGCCAATCACAAAAG+GGG + chr3_3:74186333-74186352 None:intergenic 35.0%
CACAATAGCCAATCACAAAA+GGG + chr3_3:74186334-74186353 None:intergenic 35.0%
ATCACCATTAGATGAACAGA+TGG + chr3_3:74186590-74186609 None:intergenic 35.0%
GATGGATAACAACCTTACAT+TGG - chr3_3:74186622-74186641 Msa0471790:intron 35.0%
! AAGCTCATTTTCCCAATGTA+AGG + chr3_3:74186637-74186656 None:intergenic 35.0%
AAATAGATGGATGGAAGAAG+CGG + chr3_3:74186703-74186722 None:intergenic 35.0%
! AATGGCCTTAAATAGATGGA+TGG + chr3_3:74186712-74186731 None:intergenic 35.0%
! GTCAAATGGCCTTAAATAGA+TGG + chr3_3:74186716-74186735 None:intergenic 35.0%
CATATATACACTCCTCAAGA+AGG + chr3_3:74186913-74186932 None:intergenic 35.0%
TTATAGAACCAATACAGGAG+TGG + chr3_3:74186947-74186966 None:intergenic 35.0%
ACAGTAGATTAGCAAATGTG+TGG - chr3_3:74186969-74186988 Msa0471790:intron 35.0%
AATATTTGTCTGTTCTGCAG+TGG - chr3_3:74187208-74187227 Msa0471790:intron 35.0%
!!! CGATGAAGTAGACAGTTTTT+TGG - chr3_3:74187280-74187299 Msa0471790:intron 35.0%
ACTTAAAAACTTACGATCGG+TGG + chr3_3:74187381-74187400 None:intergenic 35.0%
!! TTGCTTCATCAAGTTCTGAA+GGG + chr3_3:74187549-74187568 None:intergenic 35.0%
! ATTGCTTCATCAAGTTCTGA+AGG + chr3_3:74187550-74187569 None:intergenic 35.0%
TATCCAATTTCAAAGGCTTG+AGG + chr3_3:74187586-74187605 None:intergenic 35.0%
GTCTGGATATCCAATTTCAA+AGG + chr3_3:74187593-74187612 None:intergenic 35.0%
TTGAAATTGGATATCCAGAC+CGG - chr3_3:74187593-74187612 Msa0471790:CDS 35.0%
ACTGCATAATGAGAAGAAAG+GGG - chr3_3:74187771-74187790 Msa0471790:intron 35.0%
! AAGATCAATTTGTGATGACG+TGG - chr3_3:74188018-74188037 Msa0471790:intron 35.0%
!!! TTTTTTCATATCATGAGCGG+TGG - chr3_3:74188056-74188075 Msa0471790:intron 35.0%
TTTAATCCTGAGCATCTACT+TGG + chr3_3:74188308-74188327 None:intergenic 35.0%
TTTGGGAACTAGAATAACCA+AGG + chr3_3:74188389-74188408 None:intergenic 35.0%
TGCATGAAATTCTGAGCTAA+AGG + chr3_3:74188452-74188471 None:intergenic 35.0%
GTACAATATCAAAAGTAGGG+CGG + chr3_3:74188559-74188578 None:intergenic 35.0%
TTCGTTCGTTCAAAGGACAT+GGG - chr3_3:74183232-74183251 Msa0471790:three_prime_UTR 40.0%
ACAAGACCTGTTGTTATACG+CGG - chr3_3:74183279-74183298 Msa0471790:three_prime_UTR 40.0%
!! AAGTTACTGGGTATTGGTCA+CGG - chr3_3:74183315-74183334 Msa0471790:three_prime_UTR 40.0%
TTCTTCGATGATTCACGGTT+CGG + chr3_3:74183358-74183377 None:intergenic 40.0%
AATGGGTACCTCATAGGAAT+TGG + chr3_3:74183437-74183456 None:intergenic 40.0%
!! ATGAGAGCATAGGTTGGTTT+CGG - chr3_3:74183553-74183572 Msa0471790:intron 40.0%
TCGGGCTGAAAATTGTCAAA+CGG - chr3_3:74183572-74183591 Msa0471790:intron 40.0%
TAGTTGCATAGAGCAACACA+AGG - chr3_3:74183641-74183660 Msa0471790:intron 40.0%
TTGCGCTCTTTACTGTATAC+AGG - chr3_3:74183903-74183922 Msa0471790:CDS 40.0%
AATTCTACATCGATGTGGTC+AGG + chr3_3:74183955-74183974 None:intergenic 40.0%
! TTTTCGCATGGCAAACTTCT+TGG - chr3_3:74184054-74184073 Msa0471790:CDS 40.0%
CAAACTTCTTGGACCACAAA+AGG - chr3_3:74184065-74184084 Msa0471790:CDS 40.0%
AACTTCTTGGACCACAAAAG+GGG - chr3_3:74184067-74184086 Msa0471790:CDS 40.0%
AACCTGATGAGCAAATGGTT+TGG - chr3_3:74184186-74184205 Msa0471790:intron 40.0%
ACCTGATGAGCAAATGGTTT+GGG - chr3_3:74184187-74184206 Msa0471790:intron 40.0%
! CAACACACTTACCAAGCTTT+TGG + chr3_3:74184218-74184237 None:intergenic 40.0%
GCATAATATATGCAAGGTCC+GGG - chr3_3:74184299-74184318 Msa0471790:CDS 40.0%
CATAATATATGCAAGGTCCG+GGG - chr3_3:74184300-74184319 Msa0471790:CDS 40.0%
!!! ATTTTTTTTGGTGGTGGCCA+GGG + chr3_3:74184332-74184351 None:intergenic 40.0%
!!! TATTTTTTTTGGTGGTGGCC+AGG + chr3_3:74184333-74184352 None:intergenic 40.0%
TGGTATCACTTGCAGTTGTA+AGG - chr3_3:74184599-74184618 Msa0471790:intron 40.0%
TCAAATACCATTTAGCCCAG+TGG - chr3_3:74184729-74184748 Msa0471790:intron 40.0%
! TTTTGTATGGGACAGAGTGT+TGG - chr3_3:74184767-74184786 Msa0471790:intron 40.0%
! TTTGTATGGGACAGAGTGTT+GGG - chr3_3:74184768-74184787 Msa0471790:intron 40.0%
GCTTAAGTGGTACTCATAGT+AGG - chr3_3:74184845-74184864 Msa0471790:intron 40.0%
GTACTCATAGTAGGAGAGTT+GGG - chr3_3:74184854-74184873 Msa0471790:intron 40.0%
TACTCATAGTAGGAGAGTTG+GGG - chr3_3:74184855-74184874 Msa0471790:intron 40.0%
TAGCACTCACCGTAAAAAAG+AGG - chr3_3:74184878-74184897 Msa0471790:intron 40.0%
AGCACTCACCGTAAAAAAGA+GGG - chr3_3:74184879-74184898 Msa0471790:intron 40.0%
AAGAAGAGTAGATCAGATGG+AGG - chr3_3:74184960-74184979 Msa0471790:intron 40.0%
AATCACATCCCTAGAGACAA+AGG - chr3_3:74184985-74185004 Msa0471790:intron 40.0%
! TTGGTCTTCCTTTGTCTCTA+GGG + chr3_3:74184996-74185015 None:intergenic 40.0%
!! ATTGGTCTTCCTTTGTCTCT+AGG + chr3_3:74184997-74185016 None:intergenic 40.0%
! AAGCCTTATCACAGTATGTG+GGG + chr3_3:74185125-74185144 None:intergenic 40.0%
! CAAGCCTTATCACAGTATGT+GGG + chr3_3:74185126-74185145 None:intergenic 40.0%
!! GCAATGAGTTTGTTGCAGAA+CGG + chr3_3:74185268-74185287 None:intergenic 40.0%
AAGCATAAATAGGACACAGG+GGG + chr3_3:74185316-74185335 None:intergenic 40.0%
CAAGCATAAATAGGACACAG+GGG + chr3_3:74185317-74185336 None:intergenic 40.0%
!!! TCCAGCTTTTAGAGCTATGA+GGG + chr3_3:74185445-74185464 None:intergenic 40.0%
!!! TTCCAGCTTTTAGAGCTATG+AGG + chr3_3:74185446-74185465 None:intergenic 40.0%
! AACTGTGGTCAATTTGGGTT+TGG - chr3_3:74185623-74185642 Msa0471790:intron 40.0%
! TATGTTGGGTCTGTTTCTCT+CGG + chr3_3:74185665-74185684 None:intergenic 40.0%
TCTCTCTCTCTCTCATCTTT+GGG + chr3_3:74185828-74185847 None:intergenic 40.0%
ATCTATGCTTGACCACACTA+GGG - chr3_3:74185990-74186009 Msa0471790:intron 40.0%
!! AAAAGCATTTGTCACCTGGT+GGG - chr3_3:74186137-74186156 Msa0471790:intron 40.0%
!! GGTGTTATTAAAATCCCACC+AGG + chr3_3:74186154-74186173 None:intergenic 40.0%
!! GGTGGGATTTTAATAACACC+AGG - chr3_3:74186154-74186173 Msa0471790:intron 40.0%
CAATAGCCAATCACAAAAGG+GGG + chr3_3:74186332-74186351 None:intergenic 40.0%
CCACAATAGCCAATCACAAA+AGG + chr3_3:74186335-74186354 None:intergenic 40.0%
!! CCTTTTGTGATTGGCTATTG+TGG - chr3_3:74186332-74186351 Msa0471790:intron 40.0%
AATGGACGTCATATTAGGGT+TGG - chr3_3:74186392-74186411 Msa0471790:intron 40.0%
!! CATATTAGGGTTGGTTCTAG+TGG - chr3_3:74186401-74186420 Msa0471790:intron 40.0%
AAGGCCATCTGTTCATCTAA+TGG - chr3_3:74186583-74186602 Msa0471790:intron 40.0%
!!! GGTGATCTGTTGTTTTCAGA+TGG - chr3_3:74186604-74186623 Msa0471790:intron 40.0%
TTTGAAGGCTTGAAGCTGTT+CGG - chr3_3:74186999-74187018 Msa0471790:intron 40.0%
GAAACATAGTTAGGTATGCC+AGG + chr3_3:74187069-74187088 None:intergenic 40.0%
!!! TTCTGTTGCTTTTTTCTGCG+TGG - chr3_3:74187163-74187182 Msa0471790:intron 40.0%
! TTCTGCGTGGTTCTTTGTTT+AGG - chr3_3:74187176-74187195 Msa0471790:intron 40.0%
! AAACTGAGTTCATGGCTCTA+TGG - chr3_3:74187345-74187364 Msa0471790:intron 40.0%
! AACTGAGTTCATGGCTCTAT+GGG - chr3_3:74187346-74187365 Msa0471790:intron 40.0%
!! CTTCCTCAAGCCTTTGAAAT+TGG - chr3_3:74187580-74187599 Msa0471790:CDS 40.0%
ATATATCAGCCCTCTCTTTC+CGG + chr3_3:74187615-74187634 None:intergenic 40.0%
AGAGAGGGCTGATATATTGA+AGG - chr3_3:74187618-74187637 Msa0471790:CDS 40.0%
ACATCAAGAACGTCGTTTCA+TGG - chr3_3:74188213-74188232 Msa0471790:intron 40.0%
!! TCAGGTTGAAGCTGTAATCA+GGG - chr3_3:74188251-74188270 Msa0471790:CDS 40.0%
AGTAATTGCGGTTGCAATCT+GGG + chr3_3:74188365-74188384 None:intergenic 40.0%
AAGTAATTGCGGTTGCAATC+TGG + chr3_3:74188366-74188385 None:intergenic 40.0%
!! TTCGCGTAAGTTTCTGAGGT+GGG + chr3_3:74183058-74183077 None:intergenic 45.0%
! TTTCGCGTAAGTTTCTGAGG+TGG + chr3_3:74183059-74183078 None:intergenic 45.0%
ACCTCAGAAACTTACGCGAA+AGG - chr3_3:74183058-74183077 Msa0471790:three_prime_UTR 45.0%
TCCTTTCGCGTAAGTTTCTG+AGG + chr3_3:74183062-74183081 None:intergenic 45.0%
TTGTGGTCTCCGAAAATCGA+GGG + chr3_3:74183148-74183167 None:intergenic 45.0%
TTTGTGGTCTCCGAAAATCG+AGG + chr3_3:74183149-74183168 None:intergenic 45.0%
GTATCCAACCACCGAATTTG+TGG + chr3_3:74183165-74183184 None:intergenic 45.0%
TCGTTCGTTCGTTCGTTCAA+AGG - chr3_3:74183225-74183244 Msa0471790:three_prime_UTR 45.0%
GTTCGTTCGTTCAAAGGACA+TGG - chr3_3:74183231-74183250 Msa0471790:three_prime_UTR 45.0%
!! GGGAGGTTTTTCAGATACGA+AGG - chr3_3:74183252-74183271 Msa0471790:three_prime_UTR 45.0%
!! AGTTACTGGGTATTGGTCAC+GGG - chr3_3:74183316-74183335 Msa0471790:three_prime_UTR 45.0%
TCTTCGATGATTCACGGTTC+GGG + chr3_3:74183357-74183376 None:intergenic 45.0%
GAACCGTGAATCATCGAAGA+AGG - chr3_3:74183357-74183376 Msa0471790:CDS 45.0%
GAGCCTTCTTCGATGATTCA+CGG + chr3_3:74183363-74183382 None:intergenic 45.0%
! TTAGGGATGAGAGCATAGGT+TGG - chr3_3:74183547-74183566 Msa0471790:intron 45.0%
!! TGAGAGCATAGGTTGGTTTC+GGG - chr3_3:74183554-74183573 Msa0471790:intron 45.0%
AAACTATCATATGCGGGACC+TGG - chr3_3:74183808-74183827 Msa0471790:intron 45.0%
AAACAAGTCTGGTCGTTGCA+GGG + chr3_3:74184037-74184056 None:intergenic 45.0%
AAAACAAGTCTGGTCGTTGC+AGG + chr3_3:74184038-74184057 None:intergenic 45.0%
TTGCCATGCGAAAACAAGTC+TGG + chr3_3:74184048-74184067 None:intergenic 45.0%
ACTTCTTGGACCACAAAAGG+GGG - chr3_3:74184068-74184087 Msa0471790:CDS 45.0%
! TACAACAGAACCCCCTTTTG+TGG + chr3_3:74184081-74184100 None:intergenic 45.0%
CAAAAGGGGGTTCTGTTGTA+TGG - chr3_3:74184081-74184100 Msa0471790:CDS 45.0%
AAAGCTATTGCCAAGGAGTC+TGG - chr3_3:74184135-74184154 Msa0471790:CDS 45.0%
CCTGATGAGCAAATGGTTTG+GGG - chr3_3:74184188-74184207 Msa0471790:intron 45.0%
CCAACTGAGCTAAGCTCAAA+AGG + chr3_3:74184269-74184288 None:intergenic 45.0%
! CCTTTTGAGCTTAGCTCAGT+TGG - chr3_3:74184266-74184285 Msa0471790:intron 45.0%
TTGAGCTTAGCTCAGTTGGT+AGG - chr3_3:74184270-74184289 Msa0471790:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG - chr3_3:74184271-74184290 Msa0471790:intron 45.0%
GTTTCACTCACTGTTACGAG+TGG - chr3_3:74184579-74184598 Msa0471790:intron 45.0%
ACCATTTAGCCCAGTGGTAA+AGG - chr3_3:74184735-74184754 Msa0471790:intron 45.0%
GGTACTCATAGTAGGAGAGT+TGG - chr3_3:74184853-74184872 Msa0471790:intron 45.0%
ACTCACCGTAAAAAAGAGGG+TGG - chr3_3:74184882-74184901 Msa0471790:intron 45.0%
CTTATCACAGTATGTGGGGT+CGG + chr3_3:74185121-74185140 None:intergenic 45.0%
! CCAAGCCTTATCACAGTATG+TGG + chr3_3:74185127-74185146 None:intergenic 45.0%
CCACATACTGTGATAAGGCT+TGG - chr3_3:74185124-74185143 Msa0471790:intron 45.0%
!!! GAGGAGTGTTTGCCCTTTTA+AGG + chr3_3:74185238-74185257 None:intergenic 45.0%
TAAAAGGGCAAACACTCCTC+AGG - chr3_3:74185238-74185257 Msa0471790:intron 45.0%
!!! TAGGTTGATTTTGAGGTGGG+CGG + chr3_3:74185421-74185440 None:intergenic 45.0%
!!! GGCTAGGTTGATTTTGAGGT+GGG + chr3_3:74185424-74185443 None:intergenic 45.0%
!!! TGAGGGCTAGGTTGATTTTG+AGG + chr3_3:74185428-74185447 None:intergenic 45.0%
!!! CTTTTAGAGCTATGAGGGCT+AGG + chr3_3:74185440-74185459 None:intergenic 45.0%
GCTGTGTATGTCCTAAGCAA+AGG - chr3_3:74185558-74185577 Msa0471790:intron 45.0%
! GGTTTGGCTCATTAGCCATT+AGG - chr3_3:74185639-74185658 Msa0471790:intron 45.0%
AACAAATGGAGCCTGGATGT+GGG + chr3_3:74185694-74185713 None:intergenic 45.0%
GAAGAACAACAAATGGAGCC+TGG + chr3_3:74185701-74185720 None:intergenic 45.0%
TGTGAGATTCTGTTGTAGCC+TGG - chr3_3:74185740-74185759 Msa0471790:intron 45.0%
GTGAGATTCTGTTGTAGCCT+GGG - chr3_3:74185741-74185760 Msa0471790:intron 45.0%
TGAGATTCTGTTGTAGCCTG+GGG - chr3_3:74185742-74185761 Msa0471790:intron 45.0%
CTCTCTCTCTCTCTCATCTT+TGG + chr3_3:74185829-74185848 None:intergenic 45.0%
CACGATCGTGATCGTGAAAA+AGG + chr3_3:74185875-74185894 None:intergenic 45.0%
!!! TTTTTGGGTCACGGGTATTG+CGG + chr3_3:74185946-74185965 None:intergenic 45.0%
!!! GCAGAGATTTTTTGGGTCAC+GGG + chr3_3:74185954-74185973 None:intergenic 45.0%
!!! GGCAGAGATTTTTTGGGTCA+CGG + chr3_3:74185955-74185974 None:intergenic 45.0%
CATCTATGCTTGACCACACT+AGG - chr3_3:74185989-74186008 Msa0471790:intron 45.0%
CATTGTGGTTAACCCTAGTG+TGG + chr3_3:74186005-74186024 None:intergenic 45.0%
!! GCAGAAAAGCATTTGTCACC+TGG - chr3_3:74186133-74186152 Msa0471790:intron 45.0%
!! GAAAAGCATTTGTCACCTGG+TGG - chr3_3:74186136-74186155 Msa0471790:intron 45.0%
! TGTGATTGGCTATTGTGGTC+AGG - chr3_3:74186337-74186356 Msa0471790:intron 45.0%
! GTGATTGGCTATTGTGGTCA+GGG - chr3_3:74186338-74186357 Msa0471790:intron 45.0%
CTATTGTGGTCAGGGATCTA+GGG - chr3_3:74186346-74186365 Msa0471790:intron 45.0%
AGAACACCAGCACTCGATAA+GGG + chr3_3:74186501-74186520 None:intergenic 45.0%
AAGAACACCAGCACTCGATA+AGG + chr3_3:74186502-74186521 None:intergenic 45.0%
! CTCAGTCTGCTTGATGGATA+AGG - chr3_3:74186564-74186583 Msa0471790:intron 45.0%
TCGTTGCAAGATCCTTCTTG+AGG - chr3_3:74186898-74186917 Msa0471790:intron 45.0%
AGCAGTTAATAAGGGCAACC+TGG - chr3_3:74187048-74187067 Msa0471790:intron 45.0%
!! GTTGTTGTGTAGAGAGTGCT+CGG - chr3_3:74187497-74187516 Msa0471790:CDS 45.0%
!! TTGTTGTGTAGAGAGTGCTC+GGG - chr3_3:74187498-74187517 Msa0471790:CDS 45.0%
ATATCCAGACCGGAAAGAGA+GGG - chr3_3:74187603-74187622 Msa0471790:CDS 45.0%
GGTTATCTTAAAGGGCGAGA+AGG - chr3_3:74187639-74187658 Msa0471790:CDS 45.0%
GGTTTATGCAAGGGTTACAC+TGG - chr3_3:74187694-74187713 Msa0471790:CDS 45.0%
TGTCTTCCGCGAAGTAGAAA+GGG + chr3_3:74188163-74188182 None:intergenic 45.0%
ATGTCTTCCGCGAAGTAGAA+AGG + chr3_3:74188164-74188183 None:intergenic 45.0%
TTCTACTTCGCGGAAGACAT+CGG - chr3_3:74188164-74188183 Msa0471790:intron 45.0%
!! CTCAGGTTGAAGCTGTAATC+AGG - chr3_3:74188250-74188269 Msa0471790:CDS 45.0%
TCACATCCAAGTAGATGCTC+AGG - chr3_3:74188299-74188318 Msa0471790:CDS 45.0%
TGCAACCGCAATTACTTCCT+TGG - chr3_3:74188369-74188388 Msa0471790:CDS 45.0%
TTCTGAGCTAAAGGCAACAC+TGG + chr3_3:74188443-74188462 None:intergenic 45.0%
!! AATGTAAAAAAAAAAAAAAA+AGG + chr3_3:74185397-74185416 None:intergenic 5.0%
TTCGGAGACCACAAATTCGG+TGG - chr3_3:74183154-74183173 Msa0471790:three_prime_UTR 50.0%
! GAGACCACAAATTCGGTGGT+TGG - chr3_3:74183158-74183177 Msa0471790:three_prime_UTR 50.0%
GTTCGTTCAAAGGACATGGG+AGG - chr3_3:74183235-74183254 Msa0471790:three_prime_UTR 50.0%
ACCTGTTGTTATACGCGGCT+AGG - chr3_3:74183284-74183303 Msa0471790:three_prime_UTR 50.0%
CCTGTTGTTATACGCGGCTA+GGG - chr3_3:74183285-74183304 Msa0471790:three_prime_UTR 50.0%
GGCGCTAAGTTACTGGGTAT+TGG - chr3_3:74183309-74183328 Msa0471790:three_prime_UTR 50.0%
AACAAGTCTGGTCGTTGCAG+GGG + chr3_3:74184036-74184055 None:intergenic 50.0%
!! CGACCAGACTTGTTTTCGCA+TGG - chr3_3:74184042-74184061 Msa0471790:CDS 50.0%
GTTCTGTTGTATGGACCTCC+TGG - chr3_3:74184090-74184109 Msa0471790:CDS 50.0%
! GGCAATAGCTTTTGCGAGCA+TGG + chr3_3:74184127-74184146 None:intergenic 50.0%
GCTCGCAAAAGCTATTGCCA+AGG - chr3_3:74184128-74184147 Msa0471790:CDS 50.0%
GAAAACTGCTCCAGACTCCT+TGG + chr3_3:74184148-74184167 None:intergenic 50.0%
CCCCAAACCATTTGCTCATC+AGG + chr3_3:74184191-74184210 None:intergenic 50.0%
TTTGGGGATGCCCAAAAGCT+TGG - chr3_3:74184204-74184223 Msa0471790:intron 50.0%
GCCTTTACCACTGGGCTAAA+TGG + chr3_3:74184739-74184758 None:intergenic 50.0%
AGAGGGTGGAAACTAGGCTT+AGG - chr3_3:74184896-74184915 Msa0471790:intron 50.0%
CGACCCCACATACTGTGATA+AGG - chr3_3:74185119-74185138 Msa0471790:intron 50.0%
AAATAGGACACAGGGGGAGA+GGG + chr3_3:74185310-74185329 None:intergenic 50.0%
TAAATAGGACACAGGGGGAG+AGG + chr3_3:74185311-74185330 None:intergenic 50.0%
!!! GGGCTAGGTTGATTTTGAGG+TGG + chr3_3:74185425-74185444 None:intergenic 50.0%
!! GCCCTCATAGCTCTAAAAGC+TGG - chr3_3:74185441-74185460 Msa0471790:intron 50.0%
GCAGATCAAGCCCAAGCAAA+TGG + chr3_3:74185540-74185559 None:intergenic 50.0%
! GTCTGTTTCTCTCGGCCTAA+TGG + chr3_3:74185657-74185676 None:intergenic 50.0%
CAACAAATGGAGCCTGGATG+TGG + chr3_3:74185695-74185714 None:intergenic 50.0%
GAGATTCTGTTGTAGCCTGG+GGG - chr3_3:74185743-74185762 Msa0471790:intron 50.0%
CAAGACAAAGCAAGGCAACC+TGG + chr3_3:74186175-74186194 None:intergenic 50.0%
! CTCTCTCCCCCTTTTGTGAT+TGG - chr3_3:74186323-74186342 Msa0471790:intron 50.0%
GCTATTGTGGTCAGGGATCT+AGG - chr3_3:74186345-74186364 Msa0471790:intron 50.0%
TGAACACCCTTATCGAGTGC+TGG - chr3_3:74186492-74186511 Msa0471790:intron 50.0%
CGAACTCTCAGTCTGCTTGA+TGG - chr3_3:74186558-74186577 Msa0471790:intron 50.0%
AGTGATGGCCACTCCTGTAT+TGG - chr3_3:74186936-74186955 Msa0471790:intron 50.0%
GAAGCTGTTCGGCTGCATAT+AGG - chr3_3:74187010-74187029 Msa0471790:intron 50.0%
AGTGGCTGCCGTATTTAGCT+TGG - chr3_3:74187226-74187245 Msa0471790:intron 50.0%
GCGTCGTTCATCAGATCATG+AGG - chr3_3:74187307-74187326 Msa0471790:intron 50.0%
! GAGTTCATGGCTCTATGGGA+TGG - chr3_3:74187350-74187369 Msa0471790:intron 50.0%
!! TGTAGAGAGTGCTCGGGTTA+TGG - chr3_3:74187504-74187523 Msa0471790:CDS 50.0%
GATATCCAGACCGGAAAGAG+AGG - chr3_3:74187602-74187621 Msa0471790:CDS 50.0%
ACCTTTGTCGCAGGCAGATT+TGG - chr3_3:74188131-74188150 Msa0471790:intron 50.0%
TCCAAATCTGCCTGCGACAA+AGG + chr3_3:74188135-74188154 None:intergenic 50.0%
AGAAGGCCCTTTCTACTTCG+CGG - chr3_3:74188154-74188173 Msa0471790:intron 50.0%
CCCTAGCCGCGTATAACAAC+AGG + chr3_3:74183288-74183307 None:intergenic 55.0%
GTTGTTATACGCGGCTAGGG+CGG - chr3_3:74183288-74183307 Msa0471790:three_prime_UTR 55.0%
TAGGGCGGCGCTAAGTTACT+GGG - chr3_3:74183303-74183322 Msa0471790:three_prime_UTR 55.0%
! CACGGTTCGGGTCGAGATAA+CGG + chr3_3:74183345-74183364 None:intergenic 55.0%
CCCTCACGCGCACAAAGATT+GGG + chr3_3:74183721-74183740 None:intergenic 55.0%
CCCAATCTTTGTGCGCGTGA+GGG - chr3_3:74183718-74183737 Msa0471790:intron 55.0%
CCAATCTTTGTGCGCGTGAG+GGG - chr3_3:74183719-74183738 Msa0471790:intron 55.0%
TTGTATGGACCTCCTGGCAC+TGG - chr3_3:74184096-74184115 Msa0471790:CDS 55.0%
TGTATGGACCTCCTGGCACT+GGG - chr3_3:74184097-74184116 Msa0471790:CDS 55.0%
! ATGGTTTTCCCAGTGCCAGG+AGG + chr3_3:74184108-74184127 None:intergenic 55.0%
! AGCATGGTTTTCCCAGTGCC+AGG + chr3_3:74184111-74184130 None:intergenic 55.0%
GTTGCAGAACGGAAAGCCTG+AGG + chr3_3:74185257-74185276 None:intergenic 55.0%
TTCATGCATCTCTCTCCCCC+AGG + chr3_3:74185761-74185780 None:intergenic 55.0%
ACTCACCGGCAGTTAGTGGA+CGG + chr3_3:74185920-74185939 None:intergenic 55.0%
GTCAACTCACCGGCAGTTAG+TGG + chr3_3:74185924-74185943 None:intergenic 55.0%
! GGGTATTGCGGTCAACTCAC+CGG + chr3_3:74185934-74185953 None:intergenic 55.0%
GGAACCTAGACCTTTGTCGC+AGG - chr3_3:74188122-74188141 Msa0471790:intron 55.0%
TCTGCCTGCGACAAAGGTCT+AGG + chr3_3:74188129-74188148 None:intergenic 55.0%
GTCGCAGGCAGATTTGGAGA+AGG - chr3_3:74188137-74188156 Msa0471790:intron 55.0%
ACGTCGTTTCATGGCGAGTC+AGG - chr3_3:74188222-74188241 Msa0471790:intron 55.0%
TGGCGAGTCAGGTGATTCTC+AGG - chr3_3:74188233-74188252 Msa0471790:CDS 55.0%
CTAGGGCGGCGCTAAGTTAC+TGG - chr3_3:74183302-74183321 Msa0471790:three_prime_UTR 60.0%
GCCCAATCTTTGTGCGCGTG+AGG - chr3_3:74183717-74183736 Msa0471790:intron 60.0%
CCCCTCACGCGCACAAAGAT+TGG + chr3_3:74183722-74183741 None:intergenic 60.0%
GATGTGCGAACAGCTCGCAC+AGG - chr3_3:74185796-74185815 Msa0471790:intron 60.0%
! CTCACCGGCAGTTAGTGGAC+GGG + chr3_3:74185919-74185938 None:intergenic 60.0%
TCAGCCCTCTCTTTCCGGTC+TGG + chr3_3:74187610-74187629 None:intergenic 60.0%
AAGGTCCGGGGCTCAAACCC+TGG - chr3_3:74184312-74184331 Msa0471790:CDS 65.0%
GGCACCCGTCCACTAACTGC+CGG - chr3_3:74185912-74185931 Msa0471790:intron 65.0%
GGTGGCCAGGGTTTGAGCCC+CGG + chr3_3:74184320-74184339 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 74183049 74188630 74183049 ID=Msa0471790;Name=Msa0471790
chr3_3 mRNA 74183049 74188630 74183049 ID=Msa0471790-mRNA-1;Parent=Msa0471790;Name=Msa0471790-mRNA-1;_AED=0.30;_eAED=0.30;_QI=201|1|1|1|1|1|5|304|385
chr3_3 exon 74183049 74183556 74183049 ID=Msa0471790-mRNA-1:exon:18980;Parent=Msa0471790-mRNA-1
chr3_3 exon 74183875 74184170 74183875 ID=Msa0471790-mRNA-1:exon:18979;Parent=Msa0471790-mRNA-1
chr3_3 exon 74184293 74184451 74184293 ID=Msa0471790-mRNA-1:exon:18978;Parent=Msa0471790-mRNA-1
chr3_3 exon 74187454 74187754 74187454 ID=Msa0471790-mRNA-1:exon:18977;Parent=Msa0471790-mRNA-1
chr3_3 exon 74188232 74188630 74188232 ID=Msa0471790-mRNA-1:exon:18976;Parent=Msa0471790-mRNA-1
chr3_3 five_prime_UTR 74188430 74188630 74188430 ID=Msa0471790-mRNA-1:five_prime_utr;Parent=Msa0471790-mRNA-1
chr3_3 CDS 74188232 74188429 74188232 ID=Msa0471790-mRNA-1:cds;Parent=Msa0471790-mRNA-1
chr3_3 CDS 74187454 74187754 74187454 ID=Msa0471790-mRNA-1:cds;Parent=Msa0471790-mRNA-1
chr3_3 CDS 74184293 74184451 74184293 ID=Msa0471790-mRNA-1:cds;Parent=Msa0471790-mRNA-1
chr3_3 CDS 74183875 74184170 74183875 ID=Msa0471790-mRNA-1:cds;Parent=Msa0471790-mRNA-1
chr3_3 CDS 74183353 74183556 74183353 ID=Msa0471790-mRNA-1:cds;Parent=Msa0471790-mRNA-1
chr3_3 three_prime_UTR 74183049 74183352 74183049 ID=Msa0471790-mRNA-1:three_prime_utr;Parent=Msa0471790-mRNA-1
Gene Sequence

>Msa0471790

ATGGGAGGTTTTTCAGATACGAAGGTTTTACAAGACCTGTTGTTATACGCGGCTAGGGCGGCGCTAAGTTACTGGGTATTGGTCACGGGTCTCCGTTATCTCGACCCGAACCGTGAATCATCGAAGAAGGCTCTTGAACAGAAGAAAGAGATTGCTAAACGTCTTGGTCGTCCTCTTATTCAAACCAATTCCTATGAGGATGTAATAGCCTGTGATGTTATAAATCCTGACCACATCGATGTAGAATTTGACTCTATTGGGGGTCTTGACACAATTAAACAAACTTTGTTTGAGCTTGTTATTCTACCCCTGCAACGACCAGACTTGTTTTCGCATGGCAAACTTCTTGGACCACAAAAGGGGGTTCTGTTGTATGGACCTCCTGGCACTGGGAAAACCATGCTCGCAAAAGCTATTGCCAAGGAGTCTGGAGCAGTTTTCATTAATGTGAGGATATCAAACCTGATGAGCAAATGGTTTGGGGATGCCCAAAAGCTTGTGGCTGCCGTATTTAGCTTGGCTCATAAACTTCAGCCATCCATTATATTCATCGATGAAGTAGACAGTTTTTTGGGTCAGCGTCGTTCATCAGATCATGAGGCTGTGTTAAACATGAAAACTGAGTTCATGGCTCTATGGGATGGATTCGCCACCGATCAGAGTGCTCGGGTTATGGTACTTGCAGCAACTAATCGCCCTTCAGAACTTGATGAAGCAATACTTCGGCGACTTCCTCAAGCCTTTGAAATTGGATATCCAGACCGGAAAGAGAGGGCTGATATATTGAAGGTTATCTTAAAGGGCGAGAAGGTTGAAGATAACATAGATTTCAGTTATATAGCTGGTTTATGCAAGGGTTACACTGGTTCAGATCTATTTGATCTTTGCAAGAAGGCCGCATATTTTCCTATTAGAGAAATACTGCATAATGAGAAGAAAGGGGAACAGTCCTGTGAACCTAGACCTTTGTCGCAGGCAGATTTGGAGAAGGCCCTTTCTACTTCGCGGAAGACATCGGTTGCTGCAAATGAATACAGTAGAATGACATCAAGAACGTCGTTTCATGGCGAGTCAGGTGATTCTCAGGTTGAAGCTGTAATCAGGGAATTATCTAAGATTATGGGGGTTTCTCACATCCAAGTAGATGCTCAGGATTAA
Protein sequence

>Msa0471790

MGGFSDTKVLQDLLLYAARAALSYWVLVTGLRYLDPNRESSKKALEQKKEIAKRLGRPLIQTNSYEDVIACDVINPDHIDVEFDSIGGLDTIKQTLFELVILPLQRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAHKLQPSIIFIDEVDSFLGQRRSSDHEAVLNMKTEFMALWDGFATDQSARVMVLAATNRPSELDEAILRRLPQAFEIGYPDRKERADILKVILKGEKVEDNIDFSYIAGLCKGYTGSDLFDLCKKAAYFPIREILHNEKKGEQSCEPRPLSQADLEKALSTSRKTSVAANEYSRMTSRTSFHGESGDSQVEAVIRELSKIMGVSHIQVDAQD*