Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0907560 | XP_013451171.1 | 99.640 | 555 | 2 | 0 | 1 | 555 | 1 | 555 | 0.0 | 1156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0907560 | sp|Q9FWA4|GAUT9_ARATH | 74.862 | 545 | 137 | 0 | 11 | 555 | 17 | 561 | 0.0 | 845 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0907560 | Msa0976980 | 0.978079 | 4.420319e-145 | -8.615850e-47 |
| Msa0907560 | Msa1435770 | 0.800366 | 1.490702e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0907560 | MtrunA17_Chr6g0456071 | 99.640 | 555 | 2 | 0 | 1 | 555 | 1 | 555 | 0.0 | 1156 |
| Msa0907560 | MtrunA17_Chr7g0235161 | 65.631 | 547 | 172 | 6 | 23 | 555 | 16 | 560 | 0.0 | 729 |
| Msa0907560 | MtrunA17_Chr8g0351091 | 47.771 | 471 | 226 | 8 | 85 | 553 | 158 | 610 | 1.02e-152 | 451 |
| Msa0907560 | MtrunA17_Chr7g0246371 | 48.511 | 470 | 222 | 8 | 85 | 553 | 212 | 662 | 2.51e-146 | 436 |
| Msa0907560 | MtrunA17_Chr2g0290961 | 49.261 | 406 | 201 | 4 | 149 | 553 | 264 | 665 | 2.07e-144 | 431 |
| Msa0907560 | MtrunA17_Chr3g0138381 | 50.777 | 386 | 188 | 2 | 169 | 553 | 279 | 663 | 3.09e-143 | 428 |
| Msa0907560 | MtrunA17_Chr8g0383241 | 46.814 | 408 | 207 | 5 | 149 | 554 | 91 | 490 | 5.50e-138 | 409 |
| Msa0907560 | MtrunA17_Chr2g0283461 | 42.769 | 484 | 246 | 10 | 78 | 553 | 72 | 532 | 3.55e-133 | 398 |
| Msa0907560 | MtrunA17_Chr4g0061711 | 45.455 | 407 | 213 | 5 | 149 | 551 | 131 | 532 | 1.09e-125 | 379 |
| Msa0907560 | MtrunA17_Chr2g0308241 | 44.039 | 411 | 221 | 5 | 148 | 554 | 130 | 535 | 1.00e-120 | 366 |
| Msa0907560 | MtrunA17_Chr2g0277591 | 39.130 | 483 | 241 | 11 | 78 | 553 | 72 | 508 | 1.78e-111 | 341 |
| Msa0907560 | MtrunA17_Chr2g0319311 | 40.136 | 441 | 232 | 10 | 136 | 553 | 108 | 539 | 2.22e-110 | 340 |
| Msa0907560 | MtrunA17_Chr7g0218571 | 39.903 | 411 | 227 | 6 | 161 | 552 | 125 | 534 | 2.57e-100 | 313 |
| Msa0907560 | MtrunA17_Chr4g0076011 | 38.670 | 406 | 213 | 8 | 178 | 552 | 70 | 470 | 2.68e-96 | 301 |
| Msa0907560 | MtrunA17_Chr6g0454101 | 39.903 | 411 | 227 | 6 | 161 | 552 | 120 | 529 | 4.25e-93 | 295 |
| Msa0907560 | MtrunA17_Chr7g0260711 | 40.000 | 355 | 183 | 5 | 202 | 553 | 325 | 652 | 3.28e-86 | 280 |
| Msa0907560 | MtrunA17_Chr1g0184751 | 40.616 | 357 | 180 | 6 | 202 | 553 | 268 | 597 | 5.12e-85 | 275 |
| Msa0907560 | MtrunA17_Chr3g0097091 | 37.405 | 393 | 220 | 10 | 177 | 551 | 142 | 526 | 4.49e-83 | 268 |
| Msa0907560 | MtrunA17_Chr4g0076331 | 48.990 | 198 | 71 | 3 | 358 | 552 | 1 | 171 | 1.59e-55 | 184 |
| Msa0907560 | MtrunA17_Chr7g0245621 | 34.324 | 370 | 208 | 9 | 193 | 552 | 298 | 642 | 1.15e-51 | 187 |
| Msa0907560 | MtrunA17_Chr4g0066331 | 31.414 | 191 | 122 | 6 | 359 | 540 | 145 | 335 | 2.23e-23 | 101 |
| Msa0907560 | MtrunA17_Chr3g0127611 | 30.526 | 190 | 124 | 5 | 359 | 540 | 140 | 329 | 5.44e-21 | 94.4 |
| Msa0907560 | MtrunA17_Chr7g0259321 | 31.429 | 175 | 115 | 4 | 359 | 528 | 151 | 325 | 6.35e-21 | 94.4 |
| Msa0907560 | MtrunA17_Chr7g0269751 | 30.814 | 172 | 114 | 4 | 359 | 525 | 159 | 330 | 6.56e-20 | 91.7 |
| Msa0907560 | MtrunA17_Chr6g0451981 | 26.351 | 296 | 178 | 10 | 240 | 525 | 74 | 339 | 1.00e-19 | 91.3 |
| Msa0907560 | MtrunA17_Chr5g0414981 | 29.534 | 193 | 123 | 6 | 359 | 540 | 180 | 370 | 2.84e-18 | 87.4 |
| Msa0907560 | MtrunA17_Chr1g0196511 | 29.474 | 190 | 126 | 5 | 359 | 540 | 154 | 343 | 8.46e-16 | 79.0 |
| Msa0907560 | MtrunA17_Chr1g0154521 | 29.688 | 192 | 125 | 6 | 359 | 540 | 165 | 356 | 1.65e-15 | 78.6 |
| Msa0907560 | MtrunA17_Chr3g0141321 | 27.225 | 191 | 130 | 5 | 359 | 540 | 139 | 329 | 5.16e-15 | 76.6 |
| Msa0907560 | MtrunA17_Chr8g0373671 | 27.461 | 193 | 129 | 6 | 359 | 540 | 142 | 334 | 1.35e-13 | 72.4 |
| Msa0907560 | MtrunA17_Chr5g0403501 | 28.272 | 191 | 128 | 6 | 359 | 540 | 166 | 356 | 1.03e-12 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0907560 | AT3G02350.1 | 74.862 | 545 | 137 | 0 | 11 | 555 | 17 | 561 | 0.0 | 845 |
| Msa0907560 | AT3G25140.1 | 65.897 | 563 | 180 | 8 | 1 | 555 | 1 | 559 | 0.0 | 752 |
| Msa0907560 | AT3G61130.1 | 51.733 | 404 | 187 | 6 | 153 | 553 | 273 | 671 | 1.88e-151 | 450 |
| Msa0907560 | AT5G47780.1 | 50.390 | 385 | 187 | 2 | 170 | 554 | 235 | 615 | 9.06e-146 | 434 |
| Msa0907560 | AT4G38270.2 | 49.490 | 392 | 192 | 3 | 167 | 553 | 284 | 674 | 6.83e-142 | 426 |
| Msa0907560 | AT4G38270.1 | 49.490 | 392 | 192 | 3 | 167 | 553 | 288 | 678 | 6.89e-142 | 426 |
| Msa0907560 | AT1G18580.1 | 47.537 | 406 | 206 | 5 | 150 | 551 | 132 | 534 | 2.93e-133 | 399 |
| Msa0907560 | AT2G46480.3 | 46.552 | 406 | 214 | 3 | 148 | 551 | 132 | 536 | 7.44e-130 | 390 |
| Msa0907560 | AT2G46480.4 | 46.552 | 406 | 214 | 3 | 148 | 551 | 145 | 549 | 1.88e-129 | 389 |
| Msa0907560 | AT2G20810.1 | 42.917 | 480 | 249 | 8 | 80 | 553 | 75 | 535 | 5.05e-128 | 385 |
| Msa0907560 | AT2G46480.2 | 43.350 | 406 | 202 | 4 | 148 | 551 | 132 | 511 | 1.05e-114 | 350 |
| Msa0907560 | AT2G46480.1 | 43.350 | 406 | 202 | 4 | 148 | 551 | 145 | 524 | 1.84e-114 | 350 |
| Msa0907560 | AT5G54690.1 | 37.529 | 429 | 243 | 9 | 148 | 553 | 106 | 532 | 5.98e-103 | 320 |
| Msa0907560 | AT3G01040.2 | 39.198 | 449 | 238 | 10 | 137 | 552 | 83 | 529 | 9.64e-98 | 307 |
| Msa0907560 | AT3G01040.3 | 39.198 | 449 | 238 | 10 | 137 | 552 | 83 | 529 | 9.64e-98 | 307 |
| Msa0907560 | AT5G15470.1 | 39.344 | 427 | 234 | 8 | 149 | 552 | 105 | 529 | 9.08e-97 | 305 |
| Msa0907560 | AT1G06780.1 | 39.633 | 381 | 200 | 7 | 177 | 553 | 233 | 587 | 6.96e-89 | 286 |
| Msa0907560 | AT1G06780.2 | 39.633 | 381 | 200 | 7 | 177 | 553 | 246 | 600 | 1.41e-88 | 285 |
| Msa0907560 | AT2G30575.1 | 36.486 | 444 | 249 | 9 | 115 | 553 | 193 | 608 | 1.89e-87 | 282 |
| Msa0907560 | AT3G01040.1 | 36.937 | 444 | 222 | 11 | 137 | 552 | 83 | 496 | 2.96e-83 | 268 |
| Msa0907560 | AT3G58790.2 | 36.962 | 395 | 221 | 11 | 179 | 551 | 16 | 404 | 4.96e-80 | 257 |
| Msa0907560 | AT3G58790.1 | 34.676 | 447 | 252 | 12 | 139 | 551 | 96 | 536 | 2.03e-79 | 259 |
| Msa0907560 | AT2G38650.2 | 34.844 | 353 | 206 | 8 | 202 | 552 | 286 | 616 | 2.64e-55 | 197 |
| Msa0907560 | AT2G38650.1 | 34.844 | 353 | 206 | 8 | 202 | 552 | 286 | 616 | 2.64e-55 | 197 |
| Msa0907560 | AT2G38650.3 | 34.100 | 261 | 149 | 7 | 202 | 461 | 286 | 524 | 1.16e-31 | 129 |
| Msa0907560 | AT3G06260.1 | 28.421 | 190 | 128 | 4 | 359 | 540 | 150 | 339 | 1.69e-20 | 93.6 |
| Msa0907560 | AT4G02130.3 | 30.000 | 190 | 125 | 5 | 359 | 540 | 150 | 339 | 1.48e-19 | 90.9 |
| Msa0907560 | AT4G02130.1 | 30.000 | 190 | 125 | 5 | 359 | 540 | 150 | 339 | 1.48e-19 | 90.9 |
| Msa0907560 | AT4G02130.2 | 30.000 | 190 | 125 | 5 | 359 | 540 | 150 | 339 | 1.48e-19 | 90.9 |
| Msa0907560 | AT3G28340.1 | 31.638 | 177 | 114 | 5 | 357 | 526 | 153 | 329 | 4.86e-19 | 89.4 |
| Msa0907560 | AT3G62660.1 | 29.474 | 190 | 126 | 5 | 359 | 540 | 164 | 353 | 1.74e-18 | 87.8 |
| Msa0907560 | AT1G70090.1 | 29.319 | 191 | 126 | 6 | 359 | 540 | 169 | 359 | 3.00e-18 | 87.4 |
| Msa0907560 | AT1G70090.2 | 29.319 | 191 | 126 | 6 | 359 | 540 | 169 | 359 | 3.00e-18 | 87.4 |
| Msa0907560 | AT1G02720.1 | 29.714 | 175 | 118 | 4 | 359 | 528 | 165 | 339 | 6.32e-18 | 85.9 |
| Msa0907560 | AT1G02720.2 | 29.714 | 175 | 118 | 4 | 359 | 528 | 165 | 339 | 6.32e-18 | 85.9 |
| Msa0907560 | AT1G24170.1 | 25.000 | 312 | 193 | 11 | 240 | 540 | 81 | 362 | 1.85e-16 | 82.0 |
| Msa0907560 | AT1G19300.1 | 29.480 | 173 | 116 | 5 | 359 | 525 | 150 | 322 | 1.88e-15 | 78.6 |
| Msa0907560 | AT1G13250.1 | 28.421 | 190 | 128 | 4 | 359 | 540 | 144 | 333 | 4.11e-14 | 74.3 |
Find 123 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTAAGATATTACGCAATTT+AGG | 0.100856 | 6_2:-6221423 | None:intergenic |
| TGACTTTGTTGTTGAGTAAA+AGG | 0.213256 | 6_2:-6222419 | None:intergenic |
| ATTGCGTAATATCTTACTTT+TGG | 0.234871 | 6_2:+6221428 | Msa0907560:CDS |
| CAAGATCCAATGGCGGTTTC+TGG | 0.247730 | 6_2:+6219062 | Msa0907560:exon |
| TTGAAAGTCTCCTTGATTAA+AGG | 0.252186 | 6_2:-6221582 | None:intergenic |
| ATCCAACATCGACAGGTATT+TGG | 0.269061 | 6_2:-6221370 | None:intergenic |
| TTCTCAATACTGTAAGAATA+TGG | 0.275254 | 6_2:-6222707 | None:intergenic |
| CAAACTCTTGGGAACTGATT+TGG | 0.285099 | 6_2:-6220923 | None:intergenic |
| GTAAGATATTACGCAATTTA+GGG | 0.288691 | 6_2:-6221422 | None:intergenic |
| TTCGTGGATTCTTCTCTTAC+CGG | 0.307603 | 6_2:+6219111 | Msa0907560:CDS |
| TTTGTCCAGATGTGCAATTT+TGG | 0.312058 | 6_2:+6222613 | Msa0907560:CDS |
| TAAGTCCAAGCACATGCTTT+TGG | 0.336542 | 6_2:-6221606 | None:intergenic |
| GTTGAAGATGTTTGATGAAT+TGG | 0.345952 | 6_2:+6220636 | Msa0907560:CDS |
| GCACTGAACATTACCATTAC+TGG | 0.348855 | 6_2:+6221673 | Msa0907560:CDS |
| AGAATGAAGACCAGACAATA+TGG | 0.352880 | 6_2:+6222365 | Msa0907560:intron |
| TTTATCATTTATTCATTTGC+TGG | 0.364022 | 6_2:+6222922 | Msa0907560:three_prime_UTR |
| TCATGGCATGTACTTGGATT+AGG | 0.374618 | 6_2:+6222451 | Msa0907560:CDS |
| CTTTCATCTCTATACTTCTC+CGG | 0.388330 | 6_2:-6220988 | None:intergenic |
| AGCTTAAGCTTGATATTTCT+AGG | 0.388924 | 6_2:+6220611 | Msa0907560:CDS |
| TCCCAAGAGTTTGCATTGCT+TGG | 0.390754 | 6_2:+6220933 | Msa0907560:CDS |
| ATCTCATCCATGCTAATACT+TGG | 0.391177 | 6_2:-6222481 | None:intergenic |
| TAAATATGTTGACAGCGATA+TGG | 0.394960 | 6_2:+6222588 | Msa0907560:CDS |
| ATAAGCCAAAATTGCACATC+TGG | 0.401451 | 6_2:-6222618 | None:intergenic |
| AGGTTTGTGGAAGATTGATT+TGG | 0.416602 | 6_2:+6221482 | Msa0907560:CDS |
| AGCCAAGCAATGCAAACTCT+TGG | 0.417299 | 6_2:-6220935 | None:intergenic |
| AGACCAGACAATATGGAAAT+CGG | 0.417792 | 6_2:+6222372 | Msa0907560:CDS |
| GACAAATCATGGCATGTACT+TGG | 0.421269 | 6_2:+6222445 | Msa0907560:CDS |
| GGTGCCGTTGAAATCTGTTT+CGG | 0.422824 | 6_2:+6221519 | Msa0907560:CDS |
| AAAGCATGTGCTTGGACTTA+CGG | 0.428521 | 6_2:+6221609 | Msa0907560:CDS |
| TTTCTCTCATCCTTTAATCA+AGG | 0.433708 | 6_2:+6221572 | Msa0907560:CDS |
| TGAAAGTTTGGTTTAAAATG+AGG | 0.442153 | 6_2:+6221172 | Msa0907560:CDS |
| CGCAATTTAGGGTACATCTC+TGG | 0.448080 | 6_2:-6221411 | None:intergenic |
| GACCAGACAATATGGAAATC+GGG | 0.448864 | 6_2:+6222373 | Msa0907560:CDS |
| TTACAGGATCTTCCTACTAC+TGG | 0.449291 | 6_2:+6220460 | Msa0907560:intron |
| AATTCATGTACTGCGAATAT+CGG | 0.450569 | 6_2:-6221551 | None:intergenic |
| CATTGAAATCTGACCCACTT+AGG | 0.457831 | 6_2:+6220512 | Msa0907560:CDS |
| TCCCCGATTTCCATATTGTC+TGG | 0.461507 | 6_2:-6222375 | None:intergenic |
| CATTGAGAATCAAGGTGATA+AGG | 0.462472 | 6_2:+6221311 | Msa0907560:CDS |
| CTCAACACATCCTCATCAAT+CGG | 0.464839 | 6_2:-6220724 | None:intergenic |
| ATGTTGCTGCAATGAAAGTT+TGG | 0.471183 | 6_2:+6221160 | Msa0907560:CDS |
| CAAAGTCACTGGACAAATCA+TGG | 0.471586 | 6_2:+6222434 | Msa0907560:CDS |
| GTTTGCATTGCTTGGCTATG+AGG | 0.472066 | 6_2:+6220941 | Msa0907560:CDS |
| TGTTAAATGTTGCTTGCCAC+AGG | 0.480648 | 6_2:+6222737 | Msa0907560:three_prime_UTR |
| TTACCTTGTTCTGCCAGTAA+TGG | 0.482948 | 6_2:-6221686 | None:intergenic |
| TTTAAAATGAGGCCGGTTGA+AGG | 0.483172 | 6_2:+6221183 | Msa0907560:CDS |
| GCCAAGCAATGCAAACTCTT+GGG | 0.486260 | 6_2:-6220934 | None:intergenic |
| TCAATCCAAAAGCATGTGCT+TGG | 0.490924 | 6_2:+6221601 | Msa0907560:CDS |
| TTGCTTGGCTATGAGGCTGA+TGG | 0.491342 | 6_2:+6220948 | Msa0907560:CDS |
| CCAATGGCGGTTTCTGGTAG+AGG | 0.491768 | 6_2:+6219068 | Msa0907560:exon |
| TATTTGATCTTGATGCTTGG+AGG | 0.492476 | 6_2:+6221640 | Msa0907560:CDS |
| CTTAAATTCATCATATGTAC+CGG | 0.497877 | 6_2:+6221248 | Msa0907560:CDS |
| ATATATTTGATCTTGATGCT+TGG | 0.500145 | 6_2:+6221637 | Msa0907560:CDS |
| GCAGTTTGAGAAAGAGATCA+AGG | 0.503614 | 6_2:+6220747 | Msa0907560:CDS |
| AGTATAGAGATGAAAGTCCT+AGG | 0.505593 | 6_2:+6220995 | Msa0907560:CDS |
| GATTTGGATGGGAAGGTGAA+TGG | 0.507230 | 6_2:+6221498 | Msa0907560:CDS |
| GTTAAAGATTCAGAAGTTGA+AGG | 0.511052 | 6_2:+6220828 | Msa0907560:CDS |
| TTTCATCTCTATACTTCTCC+GGG | 0.514817 | 6_2:-6220987 | None:intergenic |
| AAAAGGACTTGACAGGTTTG+TGG | 0.514967 | 6_2:+6221469 | Msa0907560:CDS |
| TTACTCAACAACAAAGTCAC+TGG | 0.515233 | 6_2:+6222423 | Msa0907560:CDS |
| CCTCTACCAGAAACCGCCAT+TGG | 0.516987 | 6_2:-6219068 | None:intergenic |
| AAATCCACTCTTGTCCTAAG+TGG | 0.522559 | 6_2:-6220526 | None:intergenic |
| TGCTTGGCTATGAGGCTGAT+GGG | 0.525319 | 6_2:+6220949 | Msa0907560:CDS |
| TGATGATGTTGTGGTGCAAA+AGG | 0.536392 | 6_2:+6221452 | Msa0907560:CDS |
| TGTGGAAGATTGATTTGGAT+GGG | 0.537910 | 6_2:+6221487 | Msa0907560:CDS |
| TGCCAAATACCTGTCGATGT+TGG | 0.538893 | 6_2:+6221368 | Msa0907560:CDS |
| GAAGATAATCCAACATCGAC+AGG | 0.540192 | 6_2:-6221377 | None:intergenic |
| GCTGCTGTTATTCATTACAA+TGG | 0.540639 | 6_2:+6222511 | Msa0907560:CDS |
| GCGTCATTGTTTGAGTCGGA+TGG | 0.540800 | 6_2:+6220700 | Msa0907560:CDS |
| TTGTGGAAGATTGATTTGGA+TGG | 0.543073 | 6_2:+6221486 | Msa0907560:CDS |
| TGTTAATGAGTCACTTGCTA+AGG | 0.546277 | 6_2:+6220864 | Msa0907560:CDS |
| CAGCATTACATTGAGAATCA+AGG | 0.549426 | 6_2:+6221303 | Msa0907560:CDS |
| TAGAGATGAAAGTCCTAGGC+CGG | 0.550345 | 6_2:+6220999 | Msa0907560:CDS |
| GGATCTTCAAACTCCGGCCT+AGG | 0.550398 | 6_2:-6221012 | None:intergenic |
| ACAATGGAAACATGAAACCT+TGG | 0.551889 | 6_2:+6222527 | Msa0907560:CDS |
| GACAATTGTCAGATGCTACA+AGG | 0.561401 | 6_2:+6222822 | Msa0907560:three_prime_UTR |
| GGGTGAGAAGATTTCGAACC+CGG | 0.565653 | 6_2:+6220969 | Msa0907560:CDS |
| TTCAAAGCAATATCTAGCCA+AGG | 0.567247 | 6_2:-6222544 | None:intergenic |
| AAATCGGGGACGCTTCCACC+TGG | 0.569876 | 6_2:+6222388 | Msa0907560:CDS |
| ATACAATCCAAGTATTAGCA+TGG | 0.580209 | 6_2:+6222474 | Msa0907560:CDS |
| ATGCTTATGCTGCATATGCT+AGG | 0.582801 | 6_2:+6220587 | Msa0907560:CDS |
| CATCATATGTACCGGTGTTG+AGG | 0.585707 | 6_2:+6221256 | Msa0907560:CDS |
| TCTGGTAGAGGAAGCAGAGG+TGG | 0.585835 | 6_2:+6219080 | Msa0907560:CDS |
| ACATATGCATTACCAGTAGT+AGG | 0.586130 | 6_2:-6220472 | None:intergenic |
| AGTTTGGTTTAAAATGAGGC+CGG | 0.588130 | 6_2:+6221176 | Msa0907560:CDS |
| TCATGTACTGCGAATATCGG+TGG | 0.588970 | 6_2:-6221548 | None:intergenic |
| TAAAGAATGCAGTTGAGCCA+TGG | 0.589043 | 6_2:+6221103 | Msa0907560:CDS |
| ACATAGCAGAGATAAAGATC+CGG | 0.591248 | 6_2:-6219130 | None:intergenic |
| ACAAACAAAATATCACATGT+AGG | 0.592164 | 6_2:-6223015 | None:intergenic |
| AAGATGTTTGATGAATTGGC+TGG | 0.598245 | 6_2:+6220640 | Msa0907560:CDS |
| AACAATGACGCTCTGTACGT+TGG | 0.601791 | 6_2:-6220688 | None:intergenic |
| CAGAGCGTCATTGTTTGAGT+CGG | 0.602189 | 6_2:+6220696 | Msa0907560:CDS |
| CGTGATAGCTGTGTCGGTGG+TGG | 0.602400 | 6_2:+6221068 | Msa0907560:CDS |
| AATCCACTCTTGTCCTAAGT+GGG | 0.603135 | 6_2:-6220525 | None:intergenic |
| AGAGGTGGATCTACCCTTCG+TGG | 0.606916 | 6_2:+6219095 | Msa0907560:CDS |
| GTCAACAACGAATTCTCAGA+TGG | 0.608022 | 6_2:-6222802 | None:intergenic |
| CAAGAGAGTACAAGATCCAA+TGG | 0.610362 | 6_2:+6219052 | Msa0907560:exon |
| GCCTCAACTTGCCTCAACAC+CGG | 0.612683 | 6_2:-6221267 | None:intergenic |
| GTGGTGCAAAAGGACTTGAC+AGG | 0.614307 | 6_2:+6221462 | Msa0907560:CDS |
| AGACAACGTGATAGCTGTGT+CGG | 0.620965 | 6_2:+6221062 | Msa0907560:CDS |
| ACCGGTGTTGAGGCAAGTTG+AGG | 0.622859 | 6_2:+6221266 | Msa0907560:CDS |
| AAAATGAGGCCGGTTGAAGG+AGG | 0.624677 | 6_2:+6221186 | Msa0907560:CDS |
| GAAGATTGATTTGGATGGGA+AGG | 0.627613 | 6_2:+6221491 | Msa0907560:CDS |
| ACCAGACAATATGGAAATCG+GGG | 0.633868 | 6_2:+6222374 | Msa0907560:CDS |
| AGGATAGAGTGAAGATTGCG+AGG | 0.634682 | 6_2:+6220767 | Msa0907560:CDS |
| GAGTAAAAGGTAATCAAACC+AGG | 0.642054 | 6_2:-6222406 | None:intergenic |
| AAACTCGGATCTTCAAACTC+CGG | 0.646387 | 6_2:-6221018 | None:intergenic |
| TGACCCACTTAGGACAAGAG+TGG | 0.652138 | 6_2:+6220522 | Msa0907560:CDS |
| GTCGGTGGTGGTTAGATCTG+TGG | 0.652481 | 6_2:+6221080 | Msa0907560:CDS |
| AGAACCGAAACAGATTTCAA+CGG | 0.653696 | 6_2:-6221523 | None:intergenic |
| AAGAATATGGTAAGCCACAG+TGG | 0.657602 | 6_2:-6222694 | None:intergenic |
| TTACCATTACTGGCAGAACA+AGG | 0.659270 | 6_2:+6221683 | Msa0907560:CDS |
| TGCGAGGATGATGATTGTTG+AGG | 0.674761 | 6_2:+6220783 | Msa0907560:CDS |
| ATTGCATAATGATACAAACT+CGG | 0.677991 | 6_2:-6221033 | None:intergenic |
| CAACGTGATAGCTGTGTCGG+TGG | 0.680418 | 6_2:+6221065 | Msa0907560:CDS |
| GTTTCTGGTAGAGGAAGCAG+AGG | 0.683776 | 6_2:+6219077 | Msa0907560:CDS |
| GTAAGAGAAGAATCCACGAA+GGG | 0.684633 | 6_2:-6219108 | None:intergenic |
| GTCGGATGGTCCGATTGATG+AGG | 0.696242 | 6_2:+6220714 | Msa0907560:CDS |
| TAAAAGGTAATCAAACCAGG+TGG | 0.699075 | 6_2:-6222403 | None:intergenic |
| CGATTGATGAGGATGTGTTG+AGG | 0.706532 | 6_2:+6220725 | Msa0907560:CDS |
| GACAATGCAGAACTTTCCTG+TGG | 0.728672 | 6_2:-6222753 | None:intergenic |
| GGTAAGAGAAGAATCCACGA+AGG | 0.736492 | 6_2:-6219109 | None:intergenic |
| GAGAGTACAAGATCCAATGG+CGG | 0.738861 | 6_2:+6219055 | Msa0907560:exon |
| TTGAGATGAAGTGTCCACTG+TGG | 0.771477 | 6_2:+6222680 | Msa0907560:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAATAATAATAATT+TGG | + | chr6_2:6219469-6219488 | Msa0907560:intron | 0.0% |
| !! | AATAATAATAATAATAATTT+GGG | + | chr6_2:6219470-6219489 | Msa0907560:intron | 0.0% |
| !!! | TAAAGTTAAATCTAAAATAA+GGG | - | chr6_2:6219313-6219332 | None:intergenic | 10.0% |
| !!! | TTAAAGTTAAATCTAAAATA+AGG | - | chr6_2:6219314-6219333 | None:intergenic | 10.0% |
| !!! | TAATTAATGAATTAATCTTT+TGG | + | chr6_2:6219375-6219394 | Msa0907560:intron | 10.0% |
| !! | CAAATATATTAAAAAGATAA+TGG | - | chr6_2:6221810-6221829 | None:intergenic | 10.0% |
| !!! | TATTTTTTAATTTTCTAGTT+TGG | + | chr6_2:6222893-6222912 | Msa0907560:three_prime_UTR | 10.0% |
| !!! | CTTATCTAAAATTTTCATTT+TGG | + | chr6_2:6218918-6218937 | Msa0907560:five_prime_UTR | 15.0% |
| !!! | TTGTAAAGTTTTGATTTTTA+TGG | + | chr6_2:6219253-6219272 | Msa0907560:intron | 15.0% |
| !! | CAATTTCCAAAATAAAAAAT+GGG | - | chr6_2:6219282-6219301 | None:intergenic | 15.0% |
| !!! | AAAGTTAAATCTAAAATAAG+GGG | - | chr6_2:6219312-6219331 | None:intergenic | 15.0% |
| !! | AATTCATGAAATTAACATAT+GGG | - | chr6_2:6219343-6219362 | None:intergenic | 15.0% |
| !!! | TTGAAACCTATTATAAATTT+TGG | + | chr6_2:6219592-6219611 | Msa0907560:intron | 15.0% |
| !! | CAATATCCAAAATTTATAAT+AGG | - | chr6_2:6219601-6219620 | None:intergenic | 15.0% |
| !!! | CTATTATAAATTTTGGATAT+TGG | + | chr6_2:6219599-6219618 | Msa0907560:intron | 15.0% |
| !!! | AAAACTGAATCTAAAATAAA+GGG | - | chr6_2:6219631-6219650 | None:intergenic | 15.0% |
| !!! | TAAAACTGAATCTAAAATAA+AGG | - | chr6_2:6219632-6219651 | None:intergenic | 15.0% |
| !!! | ACAATAACTTTATAAACTTT+TGG | + | chr6_2:6219930-6219949 | Msa0907560:intron | 15.0% |
| !!! | AAAACTGAATCTAAAATAAA+GGG | - | chr6_2:6219631-6219650 | None:intergenic | 15.0% |
| !!! | TAAAACTGAATCTAAAATAA+AGG | - | chr6_2:6219632-6219651 | None:intergenic | 15.0% |
| !! | AATTCATCAAATTAACATAT+GGG | - | chr6_2:6219994-6220013 | None:intergenic | 15.0% |
| !!! | TCATTTTCTGAAATTATTAT+CGG | - | chr6_2:6220079-6220098 | None:intergenic | 15.0% |
| !!! | TACTTAAAAATGACAAATTT+TGG | - | chr6_2:6221929-6221948 | None:intergenic | 15.0% |
| !!! | TTGAATCTTTAATTATTTTG+AGG | - | chr6_2:6222006-6222025 | None:intergenic | 15.0% |
| !!! | TAATTTTTATTTGCTGAATT+TGG | + | chr6_2:6222848-6222867 | Msa0907560:three_prime_UTR | 15.0% |
| !! | CCAATTTCCAAAATAAAAAA+TGG | - | chr6_2:6219283-6219302 | None:intergenic | 20.0% |
| !!! | CCATTTTTTATTTTGGAAAT+TGG | + | chr6_2:6219280-6219299 | Msa0907560:intron | 20.0% |
| !! | CAATTCATGAAATTAACATA+TGG | - | chr6_2:6219344-6219363 | None:intergenic | 20.0% |
| !! | CAAAATTTGATGAATTGAAT+TGG | - | chr6_2:6219542-6219561 | None:intergenic | 20.0% |
| !! | CAATTCATCAAATTAACATA+TGG | - | chr6_2:6219995-6220014 | None:intergenic | 20.0% |
| !! | TTCATTTCTCAAATTATTAC+CGG | - | chr6_2:6220318-6220337 | None:intergenic | 20.0% |
| !! | AATTAATGTCAAAAGAAAAG+TGG | + | chr6_2:6222032-6222051 | Msa0907560:intron | 20.0% |
| !! | ATATAGAATTGCCAAAAAAA+AGG | + | chr6_2:6222061-6222080 | Msa0907560:intron | 20.0% |
| !! | TCCTTTGTACAATTATTAAT+TGG | + | chr6_2:6222295-6222314 | Msa0907560:intron | 20.0% |
| !! | TCCAATTAATAATTGTACAA+AGG | - | chr6_2:6222299-6222318 | None:intergenic | 20.0% |
| !! | TGAATCAATACAAAAATCTT+TGG | + | chr6_2:6222563-6222582 | Msa0907560:CDS | 20.0% |
| !! | TTTATCATTTATTCATTTGC+TGG | + | chr6_2:6222922-6222941 | Msa0907560:three_prime_UTR | 20.0% |
| !!! | TGGAAACCCATTTTTTATTT+TGG | + | chr6_2:6219273-6219292 | Msa0907560:intron | 25.0% |
| ! | TTGAATGTAATCATATGTGT+AGG | + | chr6_2:6219508-6219527 | Msa0907560:intron | 25.0% |
| ! | CAATTCATGAAACTAACATA+TGG | - | chr6_2:6219663-6219682 | None:intergenic | 25.0% |
| ! | TCATTTCTCAAATTATTACC+GGG | - | chr6_2:6220317-6220336 | None:intergenic | 25.0% |
| ! | TCACATATTAGTGAATTAGT+TGG | + | chr6_2:6220360-6220379 | Msa0907560:intron | 25.0% |
| ! | TATAGAGGTTGTAACAAATT+AGG | + | chr6_2:6220424-6220443 | Msa0907560:intron | 25.0% |
| !!! | AGGTTTTTGTTTTTGTTTAC+AGG | + | chr6_2:6220444-6220463 | Msa0907560:intron | 25.0% |
| ! | ATTGCATAATGATACAAACT+CGG | - | chr6_2:6221036-6221055 | None:intergenic | 25.0% |
| !! | TGAAAGTTTGGTTTAAAATG+AGG | + | chr6_2:6221172-6221191 | Msa0907560:CDS | 25.0% |
| !!! | TGCATTTTTAGAGATAAAGT+CGG | + | chr6_2:6221209-6221228 | Msa0907560:CDS | 25.0% |
| ! | CTTAAATTCATCATATGTAC+CGG | + | chr6_2:6221248-6221267 | Msa0907560:CDS | 25.0% |
| ! | GTAAGATATTACGCAATTTA+GGG | - | chr6_2:6221425-6221444 | None:intergenic | 25.0% |
| ! | AGTAAGATATTACGCAATTT+AGG | - | chr6_2:6221426-6221445 | None:intergenic | 25.0% |
| !! | ATTGCGTAATATCTTACTTT+TGG | + | chr6_2:6221428-6221447 | Msa0907560:CDS | 25.0% |
| ! | ATATATTTGATCTTGATGCT+TGG | + | chr6_2:6221637-6221656 | Msa0907560:CDS | 25.0% |
| ! | GTTTACCAGAACAAAATTAT+TGG | - | chr6_2:6221764-6221783 | None:intergenic | 25.0% |
| !! | AAGATAATGGTTATCGAAAA+AGG | - | chr6_2:6221797-6221816 | None:intergenic | 25.0% |
| !! | TTTTAATATATTTGCCTGCA+TGG | + | chr6_2:6221816-6221835 | Msa0907560:intron | 25.0% |
| !! | CAATTAACGATTTGGAAAAT+TGG | - | chr6_2:6221877-6221896 | None:intergenic | 25.0% |
| ! | GTAAGATTCAATTAACGATT+TGG | - | chr6_2:6221885-6221904 | None:intergenic | 25.0% |
| ! | TGAGTTTCATCATAATGAAT+CGG | + | chr6_2:6222141-6222160 | Msa0907560:intron | 25.0% |
| !! | TGTAGAGATTCATATTGATT+GGG | + | chr6_2:6222187-6222206 | Msa0907560:intron | 25.0% |
| ! | TTCTCAATACTGTAAGAATA+TGG | - | chr6_2:6222710-6222729 | None:intergenic | 25.0% |
| !!! | GAACAGAACAGTTTTGTTTT+TGG | + | chr6_2:6219010-6219029 | Msa0907560:five_prime_UTR | 30.0% |
| ! | ATTTTCTGTAGAAGGATTTG+TGG | - | chr6_2:6219195-6219214 | None:intergenic | 30.0% |
| ACAAAAACACACAAAAACAG+AGG | - | chr6_2:6219234-6219253 | None:intergenic | 30.0% | |
| TGTAATCATATGTGTAGGTT+CGG | + | chr6_2:6219513-6219532 | Msa0907560:intron | 30.0% | |
| TGAATGATTTGAGCATAATC+AGG | + | chr6_2:6219764-6219783 | Msa0907560:intron | 30.0% | |
| GATGAATTGAATGAATCTTG+TGG | + | chr6_2:6220006-6220025 | Msa0907560:intron | 30.0% | |
| ATTTACTAACACATAGATCC+CGG | + | chr6_2:6220296-6220315 | Msa0907560:intron | 30.0% | |
| ! | ATATGTGCACAGAACATTTT+TGG | + | chr6_2:6220489-6220508 | Msa0907560:CDS | 30.0% |
| AGCTTAAGCTTGATATTTCT+AGG | + | chr6_2:6220611-6220630 | Msa0907560:CDS | 30.0% | |
| GTTGAAGATGTTTGATGAAT+TGG | + | chr6_2:6220636-6220655 | Msa0907560:CDS | 30.0% | |
| ! | TGAATTGGCTGGTAATTTTT+CGG | + | chr6_2:6220651-6220670 | Msa0907560:CDS | 30.0% |
| GTTAAAGATTCAGAAGTTGA+AGG | + | chr6_2:6220828-6220847 | Msa0907560:CDS | 30.0% | |
| ! | TTTTTCATGTCGTTACAAAC+AGG | + | chr6_2:6221133-6221152 | Msa0907560:CDS | 30.0% |
| AATTCATGTACTGCGAATAT+CGG | - | chr6_2:6221554-6221573 | None:intergenic | 30.0% | |
| TTTCTCTCATCCTTTAATCA+AGG | + | chr6_2:6221572-6221591 | Msa0907560:CDS | 30.0% | |
| TTGAAAGTCTCCTTGATTAA+AGG | - | chr6_2:6221585-6221604 | None:intergenic | 30.0% | |
| AGGTTATAATAACTACAAGC+AGG | - | chr6_2:6221718-6221737 | None:intergenic | 30.0% | |
| ! | ATGTGCCAATAATTTTGTTC+TGG | + | chr6_2:6221756-6221775 | Msa0907560:intron | 30.0% |
| AATGTCAAAAGAAAAGTGGT+TGG | + | chr6_2:6222036-6222055 | Msa0907560:intron | 30.0% | |
| !!! | AGTGTAGTCAACCTTTTTTT+TGG | - | chr6_2:6222075-6222094 | None:intergenic | 30.0% |
| GAGTTTCATCATAATGAATC+GGG | + | chr6_2:6222142-6222161 | Msa0907560:intron | 30.0% | |
| CTGTAGAGATTCATATTGAT+TGG | + | chr6_2:6222186-6222205 | Msa0907560:intron | 30.0% | |
| GTATCGAATAGAGATACAAT+TGG | + | chr6_2:6222219-6222238 | Msa0907560:intron | 30.0% | |
| TTGTAAGATACTGATAACCA+TGG | + | chr6_2:6222248-6222267 | Msa0907560:intron | 30.0% | |
| TTAATTGGATTACCGTAAAG+TGG | + | chr6_2:6222310-6222329 | Msa0907560:intron | 30.0% | |
| AATTAGTGAGTTCCACTTTA+CGG | - | chr6_2:6222325-6222344 | None:intergenic | 30.0% | |
| !! | TGACTTTGTTGTTGAGTAAA+AGG | - | chr6_2:6222422-6222441 | None:intergenic | 30.0% |
| ATACAATCCAAGTATTAGCA+TGG | + | chr6_2:6222474-6222493 | Msa0907560:CDS | 30.0% | |
| TAAATATGTTGACAGCGATA+TGG | + | chr6_2:6222588-6222607 | Msa0907560:CDS | 30.0% | |
| ACATAGCAGAGATAAAGATC+CGG | - | chr6_2:6219133-6219152 | None:intergenic | 35.0% | |
| ! | GAGTCATCATTTTCTGTAGA+AGG | - | chr6_2:6219203-6219222 | None:intergenic | 35.0% |
| ATGATTTGAGCATAATCAGG+TGG | + | chr6_2:6219767-6219786 | Msa0907560:intron | 35.0% | |
| TGATTTGAGCATAATCAGGT+GGG | + | chr6_2:6219768-6219787 | Msa0907560:intron | 35.0% | |
| GAATTGAATGAATCTTGTGG+TGG | + | chr6_2:6220009-6220028 | Msa0907560:intron | 35.0% | |
| AACCTAATCTGTTACAAGCT+CGG | - | chr6_2:6220180-6220199 | None:intergenic | 35.0% | |
| TTACATCATCTTCCTACTAC+TGG | + | chr6_2:6220205-6220224 | Msa0907560:intron | 35.0% | |
| TTATCCGCACACTTAGAAAA+AGG | + | chr6_2:6220269-6220288 | Msa0907560:intron | 35.0% | |
| ! | ATCACCTTTTTCTAAGTGTG+CGG | - | chr6_2:6220276-6220295 | None:intergenic | 35.0% |
| ACATATGCATTACCAGTAGT+AGG | - | chr6_2:6220475-6220494 | None:intergenic | 35.0% | |
| AAGATGTTTGATGAATTGGC+TGG | + | chr6_2:6220640-6220659 | Msa0907560:CDS | 35.0% | |
| ! | TGTTAATGAGTCACTTGCTA+AGG | + | chr6_2:6220864-6220883 | Msa0907560:CDS | 35.0% |
| CTTGCTAAGGCAAAAAAGAA+CGG | + | chr6_2:6220877-6220896 | Msa0907560:CDS | 35.0% | |
| TTGCTAAGGCAAAAAAGAAC+GGG | + | chr6_2:6220878-6220897 | Msa0907560:CDS | 35.0% | |
| TTTCATCTCTATACTTCTCC+GGG | - | chr6_2:6220990-6221009 | None:intergenic | 35.0% | |
| CTTTCATCTCTATACTTCTC+CGG | - | chr6_2:6220991-6221010 | None:intergenic | 35.0% | |
| AGTATAGAGATGAAAGTCCT+AGG | + | chr6_2:6220995-6221014 | Msa0907560:CDS | 35.0% | |
| ACATGAAAAACATGCTTCCA+TGG | - | chr6_2:6221123-6221142 | None:intergenic | 35.0% | |
| ATGTTGCTGCAATGAAAGTT+TGG | + | chr6_2:6221160-6221179 | Msa0907560:CDS | 35.0% | |
| ! | AGTTTGGTTTAAAATGAGGC+CGG | + | chr6_2:6221176-6221195 | Msa0907560:CDS | 35.0% |
| CAGCATTACATTGAGAATCA+AGG | + | chr6_2:6221303-6221322 | Msa0907560:CDS | 35.0% | |
| CATTGAGAATCAAGGTGATA+AGG | + | chr6_2:6221311-6221330 | Msa0907560:CDS | 35.0% | |
| !! | ACTTTTGGATGATGATGTTG+TGG | + | chr6_2:6221443-6221462 | Msa0907560:CDS | 35.0% |
| AGGTTTGTGGAAGATTGATT+TGG | + | chr6_2:6221482-6221501 | Msa0907560:CDS | 35.0% | |
| !! | TTGTGGAAGATTGATTTGGA+TGG | + | chr6_2:6221486-6221505 | Msa0907560:CDS | 35.0% |
| !! | TGTGGAAGATTGATTTGGAT+GGG | + | chr6_2:6221487-6221506 | Msa0907560:CDS | 35.0% |
| AGAACCGAAACAGATTTCAA+CGG | - | chr6_2:6221526-6221545 | None:intergenic | 35.0% | |
| TATTTGATCTTGATGCTTGG+AGG | + | chr6_2:6221640-6221659 | Msa0907560:CDS | 35.0% | |
| ATAGAGAAGCAAAGAGTAAC+AGG | - | chr6_2:6221738-6221757 | None:intergenic | 35.0% | |
| GATCAACATTCAAGAAACCA+TGG | - | chr6_2:6222268-6222287 | None:intergenic | 35.0% | |
| AGAATGAAGACCAGACAATA+TGG | + | chr6_2:6222365-6222384 | Msa0907560:intron | 35.0% | |
| AGACCAGACAATATGGAAAT+CGG | + | chr6_2:6222372-6222391 | Msa0907560:CDS | 35.0% | |
| TAAAAGGTAATCAAACCAGG+TGG | - | chr6_2:6222406-6222425 | None:intergenic | 35.0% | |
| GAGTAAAAGGTAATCAAACC+AGG | - | chr6_2:6222409-6222428 | None:intergenic | 35.0% | |
| TTACTCAACAACAAAGTCAC+TGG | + | chr6_2:6222423-6222442 | Msa0907560:CDS | 35.0% | |
| ATCTCATCCATGCTAATACT+TGG | - | chr6_2:6222484-6222503 | None:intergenic | 35.0% | |
| GCTGCTGTTATTCATTACAA+TGG | + | chr6_2:6222511-6222530 | Msa0907560:CDS | 35.0% | |
| ACAATGGAAACATGAAACCT+TGG | + | chr6_2:6222527-6222546 | Msa0907560:CDS | 35.0% | |
| TTCAAAGCAATATCTAGCCA+AGG | - | chr6_2:6222547-6222566 | None:intergenic | 35.0% | |
| ! | TTTGTCCAGATGTGCAATTT+TGG | + | chr6_2:6222613-6222632 | Msa0907560:CDS | 35.0% |
| ATAAGCCAAAATTGCACATC+TGG | - | chr6_2:6222621-6222640 | None:intergenic | 35.0% | |
| ! | CAAGAGAGTACAAGATCCAA+TGG | + | chr6_2:6219052-6219071 | Msa0907560:exon | 40.0% |
| GTAAGAGAAGAATCCACGAA+GGG | - | chr6_2:6219111-6219130 | None:intergenic | 40.0% | |
| TTCGTGGATTCTTCTCTTAC+CGG | + | chr6_2:6219111-6219130 | Msa0907560:CDS | 40.0% | |
| TTGGTGTAACCTATGAAGCA+CGG | + | chr6_2:6219394-6219413 | Msa0907560:intron | 40.0% | |
| GAATGAGTGAACGAATCTTG+TGG | + | chr6_2:6219686-6219705 | Msa0907560:intron | 40.0% | |
| ! | ATCAGAGGGTGTAAGGAATT+AGG | + | chr6_2:6219825-6219844 | Msa0907560:intron | 40.0% |
| TGTCTGTGTTAGTGCTTCAT+AGG | - | chr6_2:6220037-6220056 | None:intergenic | 40.0% | |
| ACATATGCACTACCAGTAGT+AGG | - | chr6_2:6220220-6220239 | None:intergenic | 40.0% | |
| CTTGACACACCTTTGATTAG+AGG | + | chr6_2:6220392-6220411 | Msa0907560:intron | 40.0% | |
| ! | ACACCTTTGATTAGAGGTGT+CGG | + | chr6_2:6220398-6220417 | Msa0907560:intron | 40.0% |
| TTACAGGATCTTCCTACTAC+TGG | + | chr6_2:6220460-6220479 | Msa0907560:intron | 40.0% | |
| CATTGAAATCTGACCCACTT+AGG | + | chr6_2:6220512-6220531 | Msa0907560:CDS | 40.0% | |
| AATCCACTCTTGTCCTAAGT+GGG | - | chr6_2:6220528-6220547 | None:intergenic | 40.0% | |
| AAATCCACTCTTGTCCTAAG+TGG | - | chr6_2:6220529-6220548 | None:intergenic | 40.0% | |
| ATGCTTATGCTGCATATGCT+AGG | + | chr6_2:6220587-6220606 | Msa0907560:CDS | 40.0% | |
| CTCAACACATCCTCATCAAT+CGG | - | chr6_2:6220727-6220746 | None:intergenic | 40.0% | |
| GCAGTTTGAGAAAGAGATCA+AGG | + | chr6_2:6220747-6220766 | Msa0907560:CDS | 40.0% | |
| TGCTAAGGCAAAAAAGAACG+GGG | + | chr6_2:6220879-6220898 | Msa0907560:CDS | 40.0% | |
| CAAACTCTTGGGAACTGATT+TGG | - | chr6_2:6220926-6220945 | None:intergenic | 40.0% | |
| AAACTCGGATCTTCAAACTC+CGG | - | chr6_2:6221021-6221040 | None:intergenic | 40.0% | |
| TAAAGAATGCAGTTGAGCCA+TGG | + | chr6_2:6221103-6221122 | Msa0907560:CDS | 40.0% | |
| ! | TTTAAAATGAGGCCGGTTGA+AGG | + | chr6_2:6221183-6221202 | Msa0907560:CDS | 40.0% |
| AAAAATGCACCTCCTTCAAC+CGG | - | chr6_2:6221198-6221217 | None:intergenic | 40.0% | |
| ATCCAACATCGACAGGTATT+TGG | - | chr6_2:6221373-6221392 | None:intergenic | 40.0% | |
| GAAGATAATCCAACATCGAC+AGG | - | chr6_2:6221380-6221399 | None:intergenic | 40.0% | |
| ! | TGATGATGTTGTGGTGCAAA+AGG | + | chr6_2:6221452-6221471 | Msa0907560:CDS | 40.0% |
| AAAAGGACTTGACAGGTTTG+TGG | + | chr6_2:6221469-6221488 | Msa0907560:CDS | 40.0% | |
| !! | GAAGATTGATTTGGATGGGA+AGG | + | chr6_2:6221491-6221510 | Msa0907560:CDS | 40.0% |
| ! | TCAATCCAAAAGCATGTGCT+TGG | + | chr6_2:6221601-6221620 | Msa0907560:CDS | 40.0% |
| ! | TAAGTCCAAGCACATGCTTT+TGG | - | chr6_2:6221609-6221628 | None:intergenic | 40.0% |
| AAAGCATGTGCTTGGACTTA+CGG | + | chr6_2:6221609-6221628 | Msa0907560:CDS | 40.0% | |
| GCACTGAACATTACCATTAC+TGG | + | chr6_2:6221673-6221692 | Msa0907560:CDS | 40.0% | |
| TTACCATTACTGGCAGAACA+AGG | + | chr6_2:6221683-6221702 | Msa0907560:CDS | 40.0% | |
| TTACCTTGTTCTGCCAGTAA+TGG | - | chr6_2:6221689-6221708 | None:intergenic | 40.0% | |
| GACCAGACAATATGGAAATC+GGG | + | chr6_2:6222373-6222392 | Msa0907560:CDS | 40.0% | |
| ACCAGACAATATGGAAATCG+GGG | + | chr6_2:6222374-6222393 | Msa0907560:CDS | 40.0% | |
| CAAAGTCACTGGACAAATCA+TGG | + | chr6_2:6222434-6222453 | Msa0907560:CDS | 40.0% | |
| GACAAATCATGGCATGTACT+TGG | + | chr6_2:6222445-6222464 | Msa0907560:CDS | 40.0% | |
| TCATGGCATGTACTTGGATT+AGG | + | chr6_2:6222451-6222470 | Msa0907560:CDS | 40.0% | |
| AAGAATATGGTAAGCCACAG+TGG | - | chr6_2:6222697-6222716 | None:intergenic | 40.0% | |
| ! | TGTTAAATGTTGCTTGCCAC+AGG | + | chr6_2:6222737-6222756 | Msa0907560:three_prime_UTR | 40.0% |
| GTCAACAACGAATTCTCAGA+TGG | - | chr6_2:6222805-6222824 | None:intergenic | 40.0% | |
| GACAATTGTCAGATGCTACA+AGG | + | chr6_2:6222822-6222841 | Msa0907560:three_prime_UTR | 40.0% | |
| ! | GAGAGTACAAGATCCAATGG+CGG | + | chr6_2:6219055-6219074 | Msa0907560:exon | 45.0% |
| GGTAAGAGAAGAATCCACGA+AGG | - | chr6_2:6219112-6219131 | None:intergenic | 45.0% | |
| TAACCTATGAAGCACGGACA+CGG | + | chr6_2:6219400-6219419 | Msa0907560:intron | 45.0% | |
| CCGTGTCAATGTCTTAGTGT+CGG | - | chr6_2:6219728-6219747 | None:intergenic | 45.0% | |
| CCGACACTAAGACATTGACA+CGG | + | chr6_2:6219725-6219744 | Msa0907560:intron | 45.0% | |
| ! | TGTCTCACATGTGTCGTTGT+CGG | + | chr6_2:6220109-6220128 | Msa0907560:intron | 45.0% |
| ! | TAATCTAAGGTGTGGCACAG+TGG | - | chr6_2:6220142-6220161 | None:intergenic | 45.0% |
| TGTGCCACACCTTAGATTAG+AGG | + | chr6_2:6220143-6220162 | Msa0907560:intron | 45.0% | |
| TGCCGAGCTTGTAACAGATT+AGG | + | chr6_2:6220175-6220194 | Msa0907560:intron | 45.0% | |
| ! | GTACCGACACCTCTAATCAA+AGG | - | chr6_2:6220404-6220423 | None:intergenic | 45.0% |
| !! | TAGAGGTGTCGGTACTATAG+AGG | + | chr6_2:6220409-6220428 | Msa0907560:intron | 45.0% |
| AACAATGACGCTCTGTACGT+TGG | - | chr6_2:6220691-6220710 | None:intergenic | 45.0% | |
| ! | CAGAGCGTCATTGTTTGAGT+CGG | + | chr6_2:6220696-6220715 | Msa0907560:CDS | 45.0% |
| CGATTGATGAGGATGTGTTG+AGG | + | chr6_2:6220725-6220744 | Msa0907560:CDS | 45.0% | |
| AGGATAGAGTGAAGATTGCG+AGG | + | chr6_2:6220767-6220786 | Msa0907560:CDS | 45.0% | |
| TGCGAGGATGATGATTGTTG+AGG | + | chr6_2:6220783-6220802 | Msa0907560:CDS | 45.0% | |
| TCCCAAGAGTTTGCATTGCT+TGG | + | chr6_2:6220933-6220952 | Msa0907560:CDS | 45.0% | |
| GCCAAGCAATGCAAACTCTT+GGG | - | chr6_2:6220937-6220956 | None:intergenic | 45.0% | |
| AGCCAAGCAATGCAAACTCT+TGG | - | chr6_2:6220938-6220957 | None:intergenic | 45.0% | |
| GTTTGCATTGCTTGGCTATG+AGG | + | chr6_2:6220941-6220960 | Msa0907560:CDS | 45.0% | |
| TAGAGATGAAAGTCCTAGGC+CGG | + | chr6_2:6220999-6221018 | Msa0907560:CDS | 45.0% | |
| AGACAACGTGATAGCTGTGT+CGG | + | chr6_2:6221062-6221081 | Msa0907560:CDS | 45.0% | |
| ! | CATCATATGTACCGGTGTTG+AGG | + | chr6_2:6221256-6221275 | Msa0907560:CDS | 45.0% |
| TGCCAAATACCTGTCGATGT+TGG | + | chr6_2:6221368-6221387 | Msa0907560:CDS | 45.0% | |
| ! | CGCAATTTAGGGTACATCTC+TGG | - | chr6_2:6221414-6221433 | None:intergenic | 45.0% |
| GATTTGGATGGGAAGGTGAA+TGG | + | chr6_2:6221498-6221517 | Msa0907560:CDS | 45.0% | |
| !! | GGTGCCGTTGAAATCTGTTT+CGG | + | chr6_2:6221519-6221538 | Msa0907560:CDS | 45.0% |
| TCATGTACTGCGAATATCGG+TGG | - | chr6_2:6221551-6221570 | None:intergenic | 45.0% | |
| ! | TCTCGATTCGATAACCATGC+AGG | - | chr6_2:6221833-6221852 | None:intergenic | 45.0% |
| AGGTTGACTACACTGAGTTC+AGG | + | chr6_2:6222081-6222100 | Msa0907560:intron | 45.0% | |
| TCCCCGATTTCCATATTGTC+TGG | - | chr6_2:6222378-6222397 | None:intergenic | 45.0% | |
| ! | TTGAGATGAAGTGTCCACTG+TGG | + | chr6_2:6222680-6222699 | Msa0907560:three_prime_UTR | 45.0% |
| GACAATGCAGAACTTTCCTG+TGG | - | chr6_2:6222756-6222775 | None:intergenic | 45.0% | |
| CAAGATCCAATGGCGGTTTC+TGG | + | chr6_2:6219062-6219081 | Msa0907560:exon | 50.0% | |
| !! | GTTTCTGGTAGAGGAAGCAG+AGG | + | chr6_2:6219077-6219096 | Msa0907560:CDS | 50.0% |
| CACGGACACAAACACTGGAT+AGG | + | chr6_2:6219418-6219437 | Msa0907560:intron | 50.0% | |
| AGCATAATCAGGTGGGACAC+TGG | + | chr6_2:6219775-6219794 | Msa0907560:intron | 50.0% | |
| TCCTTACACCCTCTGATGCA+CGG | - | chr6_2:6219822-6219841 | None:intergenic | 50.0% | |
| ! | GGCACCTCTAATCTAAGGTG+TGG | - | chr6_2:6220150-6220169 | None:intergenic | 50.0% |
| ! | GCACTGGCACCTCTAATCTA+AGG | - | chr6_2:6220155-6220174 | None:intergenic | 50.0% |
| TGACCCACTTAGGACAAGAG+TGG | + | chr6_2:6220522-6220541 | Msa0907560:CDS | 50.0% | |
| GCGTCATTGTTTGAGTCGGA+TGG | + | chr6_2:6220700-6220719 | Msa0907560:CDS | 50.0% | |
| GGCAAAAAAGAACGGGGCAT+TGG | + | chr6_2:6220885-6220904 | Msa0907560:CDS | 50.0% | |
| TTGCTTGGCTATGAGGCTGA+TGG | + | chr6_2:6220948-6220967 | Msa0907560:CDS | 50.0% | |
| TGCTTGGCTATGAGGCTGAT+GGG | + | chr6_2:6220949-6220968 | Msa0907560:CDS | 50.0% | |
| GGGTGAGAAGATTTCGAACC+CGG | + | chr6_2:6220969-6220988 | Msa0907560:CDS | 50.0% | |
| AAAATGAGGCCGGTTGAAGG+AGG | + | chr6_2:6221186-6221205 | Msa0907560:CDS | 50.0% | |
| GTGGTGCAAAAGGACTTGAC+AGG | + | chr6_2:6221462-6221481 | Msa0907560:CDS | 50.0% | |
| CCTCTACCAGAAACCGCCAT+TGG | - | chr6_2:6219071-6219090 | None:intergenic | 55.0% | |
| !! | CCAATGGCGGTTTCTGGTAG+AGG | + | chr6_2:6219068-6219087 | Msa0907560:exon | 55.0% |
| TCTGGTAGAGGAAGCAGAGG+TGG | + | chr6_2:6219080-6219099 | Msa0907560:CDS | 55.0% | |
| AGAGGTGGATCTACCCTTCG+TGG | + | chr6_2:6219095-6219114 | Msa0907560:CDS | 55.0% | |
| TGTCCGTGTCCGTGCTTCAT+AGG | - | chr6_2:6219406-6219425 | None:intergenic | 55.0% | |
| ACGGACACGGACACAAACAC+TGG | + | chr6_2:6219413-6219432 | Msa0907560:intron | 55.0% | |
| ACTGGACACAGGACACACCA+AGG | + | chr6_2:6219793-6219812 | Msa0907560:intron | 55.0% | |
| ! | CAAGGTGTCCGTGCATCAGA+GGG | + | chr6_2:6219811-6219830 | Msa0907560:intron | 55.0% |
| ! | TCCGTGCATCAGAGGGTGTA+AGG | + | chr6_2:6219818-6219837 | Msa0907560:intron | 55.0% |
| TGTTACAAGCTCGGCAGCAC+TGG | - | chr6_2:6220171-6220190 | None:intergenic | 55.0% | |
| GTCGGATGGTCCGATTGATG+AGG | + | chr6_2:6220714-6220733 | Msa0907560:CDS | 55.0% | |
| GGATCTTCAAACTCCGGCCT+AGG | - | chr6_2:6221015-6221034 | None:intergenic | 55.0% | |
| CAACGTGATAGCTGTGTCGG+TGG | + | chr6_2:6221065-6221084 | Msa0907560:CDS | 55.0% | |
| ! | GTCGGTGGTGGTTAGATCTG+TGG | + | chr6_2:6221080-6221099 | Msa0907560:CDS | 55.0% |
| ! | ACCGGTGTTGAGGCAAGTTG+AGG | + | chr6_2:6221266-6221285 | Msa0907560:CDS | 55.0% |
| GCCTCAACTTGCCTCAACAC+CGG | - | chr6_2:6221270-6221289 | None:intergenic | 55.0% | |
| TCAGGTGGGACACTGGACAC+AGG | + | chr6_2:6219782-6219801 | Msa0907560:intron | 60.0% | |
| CCTCTGATGCACGGACACCT+TGG | - | chr6_2:6219813-6219832 | None:intergenic | 60.0% | |
| ! | CCAAGGTGTCCGTGCATCAG+AGG | + | chr6_2:6219810-6219829 | Msa0907560:intron | 60.0% |
| CTAAGGTGTGGCACAGTGGC+AGG | - | chr6_2:6220138-6220157 | None:intergenic | 60.0% | |
| ! | CGTGATAGCTGTGTCGGTGG+TGG | + | chr6_2:6221068-6221087 | Msa0907560:CDS | 60.0% |
| AAATCGGGGACGCTTCCACC+TGG | + | chr6_2:6222388-6222407 | Msa0907560:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 6218830 | 6223030 | 6218830 | ID=Msa0907560;Name=Msa0907560 |
| chr6_2 | mRNA | 6218830 | 6223030 | 6218830 | ID=Msa0907560-mRNA-1;Parent=Msa0907560;Name=Msa0907560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=241|1|1|1|1|1|3|388|555 |
| chr6_2 | exon | 6218830 | 6219223 | 6218830 | ID=Msa0907560-mRNA-1:exon:1964;Parent=Msa0907560-mRNA-1 |
| chr6_2 | exon | 6220466 | 6221704 | 6220466 | ID=Msa0907560-mRNA-1:exon:1965;Parent=Msa0907560-mRNA-1 |
| chr6_2 | exon | 6222367 | 6223030 | 6222367 | ID=Msa0907560-mRNA-1:exon:1966;Parent=Msa0907560-mRNA-1 |
| chr6_2 | five_prime_UTR | 6218830 | 6219070 | 6218830 | ID=Msa0907560-mRNA-1:five_prime_utr;Parent=Msa0907560-mRNA-1 |
| chr6_2 | CDS | 6219071 | 6219223 | 6219071 | ID=Msa0907560-mRNA-1:cds;Parent=Msa0907560-mRNA-1 |
| chr6_2 | CDS | 6220466 | 6221704 | 6220466 | ID=Msa0907560-mRNA-1:cds;Parent=Msa0907560-mRNA-1 |
| chr6_2 | CDS | 6222367 | 6222642 | 6222367 | ID=Msa0907560-mRNA-1:cds;Parent=Msa0907560-mRNA-1 |
| chr6_2 | three_prime_UTR | 6222643 | 6223030 | 6222643 | ID=Msa0907560-mRNA-1:three_prime_utr;Parent=Msa0907560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
