Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0976980 | XP_013451171.1 | 99.459 | 555 | 3 | 0 | 1 | 555 | 1 | 555 | 0.0 | 1153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0976980 | sp|Q9FWA4|GAUT9_ARATH | 74.679 | 545 | 138 | 0 | 11 | 555 | 17 | 561 | 0.0 | 842 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0976980 | G7ZV05 | 99.459 | 555 | 3 | 0 | 1 | 555 | 1 | 555 | 0.0 | 1153 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0097950 | Msa0976980 | 0.812115 | 4.985600e-51 | -8.615850e-47 |
| Msa0907560 | Msa0976980 | 0.978079 | 4.420319e-145 | -8.615850e-47 |
| Msa0976980 | Msa1198880 | 0.808451 | 3.077796e-50 | -8.615850e-47 |
| Msa0976980 | Msa1262960 | 0.817948 | 2.530034e-52 | -8.615850e-47 |
| Msa0976980 | Msa1435770 | 0.806871 | 6.664007e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0976980 | MtrunA17_Chr6g0456071 | 99.459 | 555 | 3 | 0 | 1 | 555 | 1 | 555 | 0.0 | 1153 |
| Msa0976980 | MtrunA17_Chr7g0235161 | 65.631 | 547 | 172 | 6 | 23 | 555 | 16 | 560 | 0.0 | 727 |
| Msa0976980 | MtrunA17_Chr8g0351091 | 47.983 | 471 | 225 | 8 | 85 | 553 | 158 | 610 | 1.00e-153 | 453 |
| Msa0976980 | MtrunA17_Chr7g0246371 | 48.723 | 470 | 221 | 8 | 85 | 553 | 212 | 662 | 2.93e-147 | 439 |
| Msa0976980 | MtrunA17_Chr3g0138381 | 51.036 | 386 | 187 | 2 | 169 | 553 | 279 | 663 | 2.45e-144 | 431 |
| Msa0976980 | MtrunA17_Chr2g0290961 | 49.261 | 406 | 201 | 4 | 149 | 553 | 264 | 665 | 5.19e-144 | 430 |
| Msa0976980 | MtrunA17_Chr8g0383241 | 46.814 | 408 | 207 | 5 | 149 | 554 | 91 | 490 | 5.21e-138 | 409 |
| Msa0976980 | MtrunA17_Chr2g0283461 | 43.182 | 484 | 244 | 10 | 78 | 553 | 72 | 532 | 2.09e-133 | 399 |
| Msa0976980 | MtrunA17_Chr4g0061711 | 45.455 | 407 | 213 | 5 | 149 | 551 | 131 | 532 | 2.43e-125 | 378 |
| Msa0976980 | MtrunA17_Chr2g0308241 | 44.039 | 411 | 221 | 5 | 148 | 554 | 130 | 535 | 2.70e-120 | 365 |
| Msa0976980 | MtrunA17_Chr2g0277591 | 39.337 | 483 | 240 | 11 | 78 | 553 | 72 | 508 | 4.43e-111 | 340 |
| Msa0976980 | MtrunA17_Chr2g0319311 | 40.136 | 441 | 232 | 10 | 136 | 553 | 108 | 539 | 8.21e-110 | 338 |
| Msa0976980 | MtrunA17_Chr7g0218571 | 39.659 | 411 | 228 | 6 | 161 | 552 | 125 | 534 | 2.21e-99 | 311 |
| Msa0976980 | MtrunA17_Chr4g0076011 | 38.670 | 406 | 213 | 8 | 178 | 552 | 70 | 470 | 3.85e-96 | 301 |
| Msa0976980 | MtrunA17_Chr6g0454101 | 39.659 | 411 | 228 | 6 | 161 | 552 | 120 | 529 | 3.94e-92 | 292 |
| Msa0976980 | MtrunA17_Chr7g0260711 | 40.000 | 355 | 183 | 5 | 202 | 553 | 325 | 652 | 9.21e-86 | 279 |
| Msa0976980 | MtrunA17_Chr1g0184751 | 41.341 | 358 | 176 | 8 | 202 | 553 | 268 | 597 | 3.28e-85 | 276 |
| Msa0976980 | MtrunA17_Chr3g0097091 | 37.405 | 393 | 220 | 10 | 177 | 551 | 142 | 526 | 1.73e-83 | 270 |
| Msa0976980 | MtrunA17_Chr4g0076331 | 48.990 | 198 | 71 | 3 | 358 | 552 | 1 | 171 | 1.64e-55 | 184 |
| Msa0976980 | MtrunA17_Chr7g0245621 | 33.696 | 368 | 213 | 8 | 193 | 552 | 298 | 642 | 2.77e-51 | 186 |
| Msa0976980 | MtrunA17_Chr4g0066331 | 31.414 | 191 | 122 | 6 | 359 | 540 | 145 | 335 | 2.31e-23 | 101 |
| Msa0976980 | MtrunA17_Chr3g0127611 | 30.526 | 190 | 124 | 5 | 359 | 540 | 140 | 329 | 5.55e-21 | 94.4 |
| Msa0976980 | MtrunA17_Chr7g0259321 | 31.429 | 175 | 115 | 4 | 359 | 528 | 151 | 325 | 6.97e-21 | 94.4 |
| Msa0976980 | MtrunA17_Chr7g0269751 | 30.814 | 172 | 114 | 4 | 359 | 525 | 159 | 330 | 6.56e-20 | 91.7 |
| Msa0976980 | MtrunA17_Chr6g0451981 | 26.351 | 296 | 178 | 10 | 240 | 525 | 74 | 339 | 9.78e-20 | 91.3 |
| Msa0976980 | MtrunA17_Chr5g0414981 | 29.534 | 193 | 123 | 6 | 359 | 540 | 180 | 370 | 2.86e-18 | 87.4 |
| Msa0976980 | MtrunA17_Chr1g0196511 | 29.474 | 190 | 126 | 5 | 359 | 540 | 154 | 343 | 8.85e-16 | 79.0 |
| Msa0976980 | MtrunA17_Chr1g0154521 | 29.688 | 192 | 125 | 6 | 359 | 540 | 165 | 356 | 1.52e-15 | 78.6 |
| Msa0976980 | MtrunA17_Chr3g0141321 | 27.225 | 191 | 130 | 5 | 359 | 540 | 139 | 329 | 4.80e-15 | 76.6 |
| Msa0976980 | MtrunA17_Chr8g0373671 | 27.461 | 193 | 129 | 6 | 359 | 540 | 142 | 334 | 1.29e-13 | 72.4 |
| Msa0976980 | MtrunA17_Chr5g0403501 | 28.272 | 191 | 128 | 6 | 359 | 540 | 166 | 356 | 1.08e-12 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0976980 | AT3G02350.1 | 74.679 | 545 | 138 | 0 | 11 | 555 | 17 | 561 | 0.0 | 842 |
| Msa0976980 | AT3G25140.1 | 65.897 | 563 | 180 | 8 | 1 | 555 | 1 | 559 | 0.0 | 751 |
| Msa0976980 | AT3G61130.1 | 51.980 | 404 | 186 | 6 | 153 | 553 | 273 | 671 | 2.75e-152 | 452 |
| Msa0976980 | AT5G47780.1 | 50.390 | 385 | 187 | 2 | 170 | 554 | 235 | 615 | 2.22e-145 | 432 |
| Msa0976980 | AT4G38270.2 | 49.490 | 392 | 192 | 3 | 167 | 553 | 284 | 674 | 5.75e-142 | 426 |
| Msa0976980 | AT4G38270.1 | 49.490 | 392 | 192 | 3 | 167 | 553 | 288 | 678 | 6.53e-142 | 426 |
| Msa0976980 | AT1G18580.1 | 47.537 | 406 | 206 | 5 | 150 | 551 | 132 | 534 | 6.60e-133 | 398 |
| Msa0976980 | AT2G46480.3 | 46.798 | 406 | 213 | 3 | 148 | 551 | 132 | 536 | 8.31e-131 | 392 |
| Msa0976980 | AT2G46480.4 | 46.798 | 406 | 213 | 3 | 148 | 551 | 145 | 549 | 1.66e-130 | 392 |
| Msa0976980 | AT2G20810.1 | 42.917 | 480 | 249 | 8 | 80 | 553 | 75 | 535 | 1.03e-127 | 384 |
| Msa0976980 | AT2G46480.2 | 43.596 | 406 | 201 | 4 | 148 | 551 | 132 | 511 | 1.19e-115 | 353 |
| Msa0976980 | AT2G46480.1 | 43.596 | 406 | 201 | 4 | 148 | 551 | 145 | 524 | 2.43e-115 | 352 |
| Msa0976980 | AT5G54690.1 | 37.529 | 429 | 243 | 9 | 148 | 553 | 106 | 532 | 1.50e-103 | 322 |
| Msa0976980 | AT3G01040.2 | 38.976 | 449 | 239 | 10 | 137 | 552 | 83 | 529 | 1.12e-96 | 304 |
| Msa0976980 | AT3G01040.3 | 38.976 | 449 | 239 | 10 | 137 | 552 | 83 | 529 | 1.12e-96 | 304 |
| Msa0976980 | AT5G15470.1 | 39.110 | 427 | 235 | 8 | 149 | 552 | 105 | 529 | 8.19e-96 | 302 |
| Msa0976980 | AT1G06780.1 | 39.633 | 381 | 200 | 7 | 177 | 553 | 233 | 587 | 9.67e-89 | 285 |
| Msa0976980 | AT1G06780.2 | 39.633 | 381 | 200 | 7 | 177 | 553 | 246 | 600 | 1.23e-88 | 285 |
| Msa0976980 | AT2G30575.1 | 36.854 | 445 | 246 | 10 | 115 | 553 | 193 | 608 | 3.04e-87 | 282 |
| Msa0976980 | AT3G01040.1 | 36.508 | 441 | 228 | 12 | 137 | 552 | 83 | 496 | 2.04e-82 | 266 |
| Msa0976980 | AT3G58790.2 | 36.802 | 394 | 223 | 10 | 179 | 551 | 16 | 404 | 1.68e-80 | 258 |
| Msa0976980 | AT3G58790.1 | 34.676 | 447 | 252 | 12 | 139 | 551 | 96 | 536 | 7.31e-80 | 261 |
| Msa0976980 | AT2G38650.2 | 34.844 | 353 | 206 | 8 | 202 | 552 | 286 | 616 | 4.43e-55 | 196 |
| Msa0976980 | AT2G38650.1 | 34.844 | 353 | 206 | 8 | 202 | 552 | 286 | 616 | 4.43e-55 | 196 |
| Msa0976980 | AT2G38650.3 | 34.100 | 261 | 149 | 7 | 202 | 461 | 286 | 524 | 2.26e-31 | 128 |
| Msa0976980 | AT3G06260.1 | 28.421 | 190 | 128 | 4 | 359 | 540 | 150 | 339 | 1.79e-20 | 93.6 |
| Msa0976980 | AT4G02130.3 | 30.000 | 190 | 125 | 5 | 359 | 540 | 150 | 339 | 1.44e-19 | 90.9 |
| Msa0976980 | AT4G02130.1 | 30.000 | 190 | 125 | 5 | 359 | 540 | 150 | 339 | 1.44e-19 | 90.9 |
| Msa0976980 | AT4G02130.2 | 30.000 | 190 | 125 | 5 | 359 | 540 | 150 | 339 | 1.44e-19 | 90.9 |
| Msa0976980 | AT3G28340.1 | 31.638 | 177 | 114 | 5 | 357 | 526 | 153 | 329 | 4.16e-19 | 89.7 |
| Msa0976980 | AT3G62660.1 | 29.474 | 190 | 126 | 5 | 359 | 540 | 164 | 353 | 1.79e-18 | 87.8 |
| Msa0976980 | AT1G70090.1 | 29.319 | 191 | 126 | 6 | 359 | 540 | 169 | 359 | 3.12e-18 | 87.4 |
| Msa0976980 | AT1G70090.2 | 29.319 | 191 | 126 | 6 | 359 | 540 | 169 | 359 | 3.12e-18 | 87.4 |
| Msa0976980 | AT1G02720.1 | 29.714 | 175 | 118 | 4 | 359 | 528 | 165 | 339 | 6.99e-18 | 85.9 |
| Msa0976980 | AT1G02720.2 | 29.714 | 175 | 118 | 4 | 359 | 528 | 165 | 339 | 6.99e-18 | 85.9 |
| Msa0976980 | AT1G24170.1 | 25.000 | 312 | 193 | 11 | 240 | 540 | 81 | 362 | 1.76e-16 | 82.0 |
| Msa0976980 | AT1G19300.1 | 29.480 | 173 | 116 | 5 | 359 | 525 | 150 | 322 | 2.13e-15 | 78.2 |
| Msa0976980 | AT1G13250.1 | 28.421 | 190 | 128 | 4 | 359 | 540 | 144 | 333 | 4.30e-14 | 74.3 |
Find 121 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTAAGATATTACGCAATTT+AGG | 0.100856 | 6_4:-11305583 | None:intergenic |
| ATGTAACAAAATGAAAATTT+TGG | 0.173783 | 6_4:-11303076 | None:intergenic |
| TGACTTTGTTGTTGAGTAAA+AGG | 0.213256 | 6_4:-11306582 | None:intergenic |
| CAAGATTCAATGGCGGTTTC+TGG | 0.223787 | 6_4:+11303215 | Msa0976980:exon |
| ATTGCGTAATATCTTACTTT+TGG | 0.234871 | 6_4:+11305588 | Msa0976980:CDS |
| TTGAAAGTCTCCTTGATTAA+AGG | 0.252186 | 6_4:-11305742 | None:intergenic |
| ATCCAACATCGACAGGTATT+TGG | 0.269061 | 6_4:-11305530 | None:intergenic |
| TTCTCAATACTGTAAGAATA+TGG | 0.275254 | 6_4:-11306870 | None:intergenic |
| CAAACTCTTGGGAACTGATT+TGG | 0.285099 | 6_4:-11305083 | None:intergenic |
| GTAAGATATTACGCAATTTA+GGG | 0.288691 | 6_4:-11305582 | None:intergenic |
| TTTGTCCAGATGTGCAATTT+TGG | 0.312058 | 6_4:+11306776 | Msa0976980:CDS |
| TAAGTCCAAGCACATGCTTT+TGG | 0.336542 | 6_4:-11305766 | None:intergenic |
| TCCGTGGATTCTTCTCTTAC+CGG | 0.336621 | 6_4:+11303264 | Msa0976980:CDS |
| GTTGAAGATGTTTGATGAAT+TGG | 0.345952 | 6_4:+11304796 | Msa0976980:CDS |
| GCACTGAACATTACCATTAC+TGG | 0.348855 | 6_4:+11305833 | Msa0976980:CDS |
| AGAATGAAGACCAGACAATA+TGG | 0.352880 | 6_4:+11306528 | Msa0976980:intron |
| TTTATCATTTATTCATTTGC+TGG | 0.364022 | 6_4:+11307085 | Msa0976980:three_prime_UTR |
| TCATGGCATGTACTTGGATT+AGG | 0.374618 | 6_4:+11306614 | Msa0976980:CDS |
| CTTTCATCTCTATACTTCTC+CGG | 0.388330 | 6_4:-11305148 | None:intergenic |
| AGCTTAAGCTTGATATTTCT+AGG | 0.388924 | 6_4:+11304771 | Msa0976980:CDS |
| TCCCAAGAGTTTGCATTGCT+TGG | 0.390754 | 6_4:+11305093 | Msa0976980:CDS |
| ATCTCATCCATGCTAATACT+TGG | 0.391177 | 6_4:-11306644 | None:intergenic |
| TAAATATGTTGACAGCGATA+TGG | 0.394960 | 6_4:+11306751 | Msa0976980:CDS |
| ATAAGCCAAAATTGCACATC+TGG | 0.401451 | 6_4:-11306781 | None:intergenic |
| AGGTTTGTGGAAGATTGATT+TGG | 0.416602 | 6_4:+11305642 | Msa0976980:CDS |
| AGCCAAGCAATGCAAACTCT+TGG | 0.417299 | 6_4:-11305095 | None:intergenic |
| AGACCAGACAATATGGAAAT+CGG | 0.417792 | 6_4:+11306535 | Msa0976980:CDS |
| GACAAATCATGGCATGTACT+TGG | 0.421269 | 6_4:+11306608 | Msa0976980:CDS |
| GGTGCCGTTGAAATCTGTTT+CGG | 0.422824 | 6_4:+11305679 | Msa0976980:CDS |
| AAAGCATGTGCTTGGACTTA+CGG | 0.428521 | 6_4:+11305769 | Msa0976980:CDS |
| TTTCTCTCATCCTTTAATCA+AGG | 0.433708 | 6_4:+11305732 | Msa0976980:CDS |
| TGAAAGTTTGGTTTAAAATG+AGG | 0.442153 | 6_4:+11305332 | Msa0976980:CDS |
| CGCAATTTAGGGTACATCTC+TGG | 0.448080 | 6_4:-11305571 | None:intergenic |
| GACCAGACAATATGGAAATC+GGG | 0.448864 | 6_4:+11306536 | Msa0976980:CDS |
| TTACAGGATCTTCCTACTAC+TGG | 0.449291 | 6_4:+11304620 | Msa0976980:intron |
| AATTCATGTACTGCGAATAT+CGG | 0.450569 | 6_4:-11305711 | None:intergenic |
| CATTGAAATCTGACCCACTT+AGG | 0.457831 | 6_4:+11304672 | Msa0976980:CDS |
| TCCCCGATTTCCATATTGTC+TGG | 0.461507 | 6_4:-11306538 | None:intergenic |
| CATTGAGAATCAAGGTGATA+AGG | 0.462472 | 6_4:+11305471 | Msa0976980:CDS |
| CAAGAGAGTACAAGATTCAA+TGG | 0.463397 | 6_4:+11303205 | Msa0976980:exon |
| CTCAACACATCCTCATCAAT+CGG | 0.464839 | 6_4:-11304884 | None:intergenic |
| ATGTTGCTGCAATGAAAGTT+TGG | 0.471183 | 6_4:+11305320 | Msa0976980:CDS |
| CAAAGTCACTGGACAAATCA+TGG | 0.471586 | 6_4:+11306597 | Msa0976980:CDS |
| GTTTGCATTGCTTGGCTATG+AGG | 0.472066 | 6_4:+11305101 | Msa0976980:CDS |
| TCAATGGCGGTTTCTGGTAG+AGG | 0.480538 | 6_4:+11303221 | Msa0976980:exon |
| TGTTAAATGTTGCTTGCCAC+AGG | 0.480648 | 6_4:+11306900 | Msa0976980:three_prime_UTR |
| TTACCTTGTTCTGCCAGTAA+TGG | 0.482948 | 6_4:-11305846 | None:intergenic |
| TTTAAAATGAGGCCGGTTGA+AGG | 0.483172 | 6_4:+11305343 | Msa0976980:CDS |
| GCCAAGCAATGCAAACTCTT+GGG | 0.486260 | 6_4:-11305094 | None:intergenic |
| TCAATCCAAAAGCATGTGCT+TGG | 0.490924 | 6_4:+11305761 | Msa0976980:CDS |
| TTGCTTGGCTATGAGGCTGA+TGG | 0.491342 | 6_4:+11305108 | Msa0976980:CDS |
| TATTTGATCTTGATGCTTGG+AGG | 0.492476 | 6_4:+11305800 | Msa0976980:CDS |
| CTTAAATTCATCATATGTAC+CGG | 0.497877 | 6_4:+11305408 | Msa0976980:CDS |
| ATATATTTGATCTTGATGCT+TGG | 0.500145 | 6_4:+11305797 | Msa0976980:CDS |
| GCAGTTTGAGAAAGAGATCA+AGG | 0.503614 | 6_4:+11304907 | Msa0976980:CDS |
| AGTATAGAGATGAAAGTCCT+AGG | 0.505593 | 6_4:+11305155 | Msa0976980:CDS |
| GATTTGGATGGGAAGGTGAA+TGG | 0.507230 | 6_4:+11305658 | Msa0976980:CDS |
| GTTAAAGATTCAGAAGTTGA+AGG | 0.511052 | 6_4:+11304988 | Msa0976980:CDS |
| TTTCATCTCTATACTTCTCC+GGG | 0.514817 | 6_4:-11305147 | None:intergenic |
| AAAAGGACTTGACAGGTTTG+TGG | 0.514967 | 6_4:+11305629 | Msa0976980:CDS |
| TTACTCAACAACAAAGTCAC+TGG | 0.515233 | 6_4:+11306586 | Msa0976980:CDS |
| AAATCCACTCTTGTCCTAAG+TGG | 0.522559 | 6_4:-11304686 | None:intergenic |
| TGCTTGGCTATGAGGCTGAT+GGG | 0.525319 | 6_4:+11305109 | Msa0976980:CDS |
| TGATGATGTTGTGGTGCAAA+AGG | 0.536392 | 6_4:+11305612 | Msa0976980:CDS |
| TGTGGAAGATTGATTTGGAT+GGG | 0.537910 | 6_4:+11305647 | Msa0976980:CDS |
| TGCCAAATACCTGTCGATGT+TGG | 0.538893 | 6_4:+11305528 | Msa0976980:CDS |
| GAAGATAATCCAACATCGAC+AGG | 0.540192 | 6_4:-11305537 | None:intergenic |
| GCTGCTGTTATTCATTACAA+TGG | 0.540639 | 6_4:+11306674 | Msa0976980:CDS |
| GCGTCATTGTTTGAGTCGGA+TGG | 0.540800 | 6_4:+11304860 | Msa0976980:CDS |
| TTGTGGAAGATTGATTTGGA+TGG | 0.543073 | 6_4:+11305646 | Msa0976980:CDS |
| TGTTAATGAGTCACTTGCTA+AGG | 0.546277 | 6_4:+11305024 | Msa0976980:CDS |
| CAGCATTACATTGAGAATCA+AGG | 0.549426 | 6_4:+11305463 | Msa0976980:CDS |
| TAGAGATGAAAGTCCTAGGC+CGG | 0.550345 | 6_4:+11305159 | Msa0976980:CDS |
| GGATCTTCAAACTCCGGCCT+AGG | 0.550398 | 6_4:-11305172 | None:intergenic |
| ACAATGGAAACATGAAACCT+TGG | 0.551889 | 6_4:+11306690 | Msa0976980:CDS |
| GACAATTGTCAGATGCTACA+AGG | 0.561401 | 6_4:+11306985 | Msa0976980:three_prime_UTR |
| TTCAAAGCAATATCTAGCCA+AGG | 0.567247 | 6_4:-11306707 | None:intergenic |
| AAATCGGGGACGCTTCCACC+TGG | 0.569876 | 6_4:+11306551 | Msa0976980:CDS |
| ATACAATCCAAGTATTAGCA+TGG | 0.580209 | 6_4:+11306637 | Msa0976980:CDS |
| ATGCTTATGCTGCATATGCT+AGG | 0.582801 | 6_4:+11304747 | Msa0976980:CDS |
| CATCATATGTACCGGTGTTG+AGG | 0.585707 | 6_4:+11305416 | Msa0976980:CDS |
| TCTGGTAGAGGAAGCAGAGG+TGG | 0.585835 | 6_4:+11303233 | Msa0976980:CDS |
| ACATATGCATTACCAGTAGT+AGG | 0.586130 | 6_4:-11304632 | None:intergenic |
| AGTTTGGTTTAAAATGAGGC+CGG | 0.588130 | 6_4:+11305336 | Msa0976980:CDS |
| TCATGTACTGCGAATATCGG+TGG | 0.588970 | 6_4:-11305708 | None:intergenic |
| TAAAGAATGCAGTTGAGCCA+TGG | 0.589043 | 6_4:+11305263 | Msa0976980:CDS |
| ACATAGCAGAGATAAAGATC+CGG | 0.591248 | 6_4:-11303283 | None:intergenic |
| ACAAACAAAATATCACATGT+AGG | 0.592164 | 6_4:-11307178 | None:intergenic |
| AAGATGTTTGATGAATTGGC+TGG | 0.598245 | 6_4:+11304800 | Msa0976980:CDS |
| AACAATGACGCTCTGTACGT+TGG | 0.601791 | 6_4:-11304848 | None:intergenic |
| CAGAGCGTCATTGTTTGAGT+CGG | 0.602189 | 6_4:+11304856 | Msa0976980:CDS |
| CGTGATAGCTGTGTCGGTGG+TGG | 0.602400 | 6_4:+11305228 | Msa0976980:CDS |
| AATCCACTCTTGTCCTAAGT+GGG | 0.603135 | 6_4:-11304685 | None:intergenic |
| TCCGGTAAGAGAAGAATCCA+CGG | 0.606005 | 6_4:-11303265 | None:intergenic |
| GTCAACAACGAATTCTCAGA+TGG | 0.608022 | 6_4:-11306965 | None:intergenic |
| GCCTCAACTTGCCTCAACAC+CGG | 0.612683 | 6_4:-11305427 | None:intergenic |
| GTGGTGCAAAAGGACTTGAC+AGG | 0.614307 | 6_4:+11305622 | Msa0976980:CDS |
| AGACAACGTGATAGCTGTGT+CGG | 0.620965 | 6_4:+11305222 | Msa0976980:CDS |
| ACCGGTGTTGAGGCAAGTTG+AGG | 0.622859 | 6_4:+11305426 | Msa0976980:CDS |
| AAAATGAGGCCGGTTGAAGG+AGG | 0.624677 | 6_4:+11305346 | Msa0976980:CDS |
| GAAGATTGATTTGGATGGGA+AGG | 0.627613 | 6_4:+11305651 | Msa0976980:CDS |
| ACCAGACAATATGGAAATCG+GGG | 0.633868 | 6_4:+11306537 | Msa0976980:CDS |
| AGGATAGAGTGAAGATTGCG+AGG | 0.634682 | 6_4:+11304927 | Msa0976980:CDS |
| GAGTAAAAGGTAATCAAACC+AGG | 0.642054 | 6_4:-11306569 | None:intergenic |
| AAACTCGGATCTTCAAACTC+CGG | 0.646387 | 6_4:-11305178 | None:intergenic |
| TGACCCACTTAGGACAAGAG+TGG | 0.652138 | 6_4:+11304682 | Msa0976980:CDS |
| GTCGGTGGTGGTTAGATCTG+TGG | 0.652481 | 6_4:+11305240 | Msa0976980:CDS |
| AGAACCGAAACAGATTTCAA+CGG | 0.653696 | 6_4:-11305683 | None:intergenic |
| AAGAATATGGTAAGCCACAG+TGG | 0.657602 | 6_4:-11306857 | None:intergenic |
| TTACCATTACTGGCAGAACA+AGG | 0.659270 | 6_4:+11305843 | Msa0976980:CDS |
| TGCGAGGATGATGATTGTTG+AGG | 0.674761 | 6_4:+11304943 | Msa0976980:CDS |
| ATTGCATAATGATACAAACT+CGG | 0.677991 | 6_4:-11305193 | None:intergenic |
| CAACGTGATAGCTGTGTCGG+TGG | 0.680418 | 6_4:+11305225 | Msa0976980:CDS |
| GTTTCTGGTAGAGGAAGCAG+AGG | 0.683776 | 6_4:+11303230 | Msa0976980:CDS |
| GTCGGATGGTCCGATTGATG+AGG | 0.696242 | 6_4:+11304874 | Msa0976980:CDS |
| TAAAAGGTAATCAAACCAGG+TGG | 0.699075 | 6_4:-11306566 | None:intergenic |
| CGATTGATGAGGATGTGTTG+AGG | 0.706532 | 6_4:+11304885 | Msa0976980:CDS |
| GAGAGTACAAGATTCAATGG+CGG | 0.710603 | 6_4:+11303208 | Msa0976980:exon |
| AGAGGTGGATCTACTCTCCG+TGG | 0.711160 | 6_4:+11303248 | Msa0976980:CDS |
| GACAATGCAGAACTTTCCTG+TGG | 0.728672 | 6_4:-11306916 | None:intergenic |
| TTGAGATGAAGTGTCCACTG+TGG | 0.771477 | 6_4:+11306843 | Msa0976980:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTGATAATAATAATAATTT+GGG | + | chr6_4:11303615-11303634 | Msa0976980:intron | 10.0% |
| !! | CAAATATATTAAAAAGATAA+TGG | - | chr6_4:11305970-11305989 | None:intergenic | 10.0% |
| !!! | TATTTTTTAATTTTCTAGTT+TGG | + | chr6_4:11307056-11307075 | Msa0976980:three_prime_UTR | 10.0% |
| !!! | ATGTAACAAAATGAAAATTT+TGG | - | chr6_4:11303079-11303098 | None:intergenic | 15.0% |
| !!! | TTGTAAAGTTTTGATTTTTA+TGG | + | chr6_4:11303406-11303425 | Msa0976980:intron | 15.0% |
| !! | CAATTTCCAAAATAAAAAAT+GGG | - | chr6_4:11303435-11303454 | None:intergenic | 15.0% |
| !!! | TAAAACTGAATCTAAAATAA+GGG | - | chr6_4:11303466-11303485 | None:intergenic | 15.0% |
| !!! | TTAAAACTGAATCTAAAATA+AGG | - | chr6_4:11303467-11303486 | None:intergenic | 15.0% |
| !! | CACTGATAATAATAATAATT+TGG | + | chr6_4:11303614-11303633 | Msa0976980:intron | 15.0% |
| !!! | ACAATAACTTTATAAACTTT+TGG | + | chr6_4:11304091-11304110 | Msa0976980:intron | 15.0% |
| !!! | AAAACTGAATCTAAAATAAA+GGG | - | chr6_4:11304124-11304143 | None:intergenic | 15.0% |
| !!! | TAAAACTGAATCTAAAATAA+AGG | - | chr6_4:11303466-11303485 | None:intergenic | 15.0% |
| !!! | TCATTTTCTGAAATTATTAT+CGG | - | chr6_4:11304240-11304259 | None:intergenic | 15.0% |
| !!! | TACTTAAAAATGACAAATTT+TGG | - | chr6_4:11306089-11306108 | None:intergenic | 15.0% |
| !!! | TTGAATCTTTAATTATTTTG+AGG | - | chr6_4:11306166-11306185 | None:intergenic | 15.0% |
| !!! | TAATTTTTATTTGCTGAATT+TGG | + | chr6_4:11307011-11307030 | Msa0976980:three_prime_UTR | 15.0% |
| !! | CCAATTTCCAAAATAAAAAA+TGG | - | chr6_4:11303436-11303455 | None:intergenic | 20.0% |
| !!! | CCATTTTTTATTTTGGAAAT+TGG | + | chr6_4:11303433-11303452 | Msa0976980:intron | 20.0% |
| !!! | AAAACTGAATCTAAAATAAG+GGG | - | chr6_4:11303465-11303484 | None:intergenic | 20.0% |
| !! | TCAATTCATGAAATTAACAT+GGG | - | chr6_4:11303496-11303515 | None:intergenic | 20.0% |
| !! | TTCAATTCATGAAATTAACA+TGG | - | chr6_4:11303497-11303516 | None:intergenic | 20.0% |
| !! | TAATTAATGAATCAATCTTG+TGG | + | chr6_4:11303526-11303545 | Msa0976980:intron | 20.0% |
| !! | CAAAATTTGATGAATTGAAT+TGG | - | chr6_4:11303684-11303703 | None:intergenic | 20.0% |
| !!! | TTGAAACTCTTTTTCAATTT+TGG | + | chr6_4:11303734-11303753 | Msa0976980:intron | 20.0% |
| !! | CAATTCATGAAATTAACATA+TGG | - | chr6_4:11303805-11303824 | None:intergenic | 20.0% |
| !! | AGTTCATCAAATTAACATAT+GGG | - | chr6_4:11304155-11304174 | None:intergenic | 20.0% |
| !! | TTCATTTCTCAAATTATTAC+CGG | - | chr6_4:11304478-11304497 | None:intergenic | 20.0% |
| !! | AATTAATGTCAAAAGAAAAG+TGG | + | chr6_4:11306192-11306211 | Msa0976980:intron | 20.0% |
| !! | ATATAGAATTGCCAAAAAAA+AGG | + | chr6_4:11306221-11306240 | Msa0976980:intron | 20.0% |
| !! | TCCTTTGTACAATTATTAAT+TGG | + | chr6_4:11306458-11306477 | Msa0976980:intron | 20.0% |
| !! | TCCAATTAATAATTGTACAA+AGG | - | chr6_4:11306462-11306481 | None:intergenic | 20.0% |
| !! | TGAATCAATACAAAAATCTT+TGG | + | chr6_4:11306726-11306745 | Msa0976980:CDS | 20.0% |
| !! | TTTATCATTTATTCATTTGC+TGG | + | chr6_4:11307085-11307104 | Msa0976980:three_prime_UTR | 20.0% |
| !!! | GAACAAAACAGTTTTGTTTT+TGG | + | chr6_4:11303163-11303182 | Msa0976980:five_prime_UTR | 25.0% |
| !!! | TGGAAACCCATTTTTTATTT+TGG | + | chr6_4:11303426-11303445 | Msa0976980:intron | 25.0% |
| !! | AAAACCGAATCTGAAATAAA+GGG | - | chr6_4:11303773-11303792 | None:intergenic | 25.0% |
| !! | TAAAACCGAATCTGAAATAA+AGG | - | chr6_4:11303774-11303793 | None:intergenic | 25.0% |
| !! | TCATTTTCTCAAACTATTAC+CGG | - | chr6_4:11303908-11303927 | None:intergenic | 25.0% |
| ! | ATGAATATTTGAGCATAATC+AGG | + | chr6_4:11303924-11303943 | Msa0976980:intron | 25.0% |
| ! | CAGTTCATCAAATTAACATA+TGG | - | chr6_4:11304156-11304175 | None:intergenic | 25.0% |
| ! | TCATTTCTCAAATTATTACC+GGG | - | chr6_4:11304477-11304496 | None:intergenic | 25.0% |
| ! | TCACATATTAGTGAATTAGT+TGG | + | chr6_4:11304520-11304539 | Msa0976980:intron | 25.0% |
| ! | TATAGAGGTTGTAACAAATT+AGG | + | chr6_4:11304584-11304603 | Msa0976980:intron | 25.0% |
| !!! | AGGTTTTTGTTTTTGTTTAC+AGG | + | chr6_4:11304604-11304623 | Msa0976980:intron | 25.0% |
| ! | ATTGCATAATGATACAAACT+CGG | - | chr6_4:11305196-11305215 | None:intergenic | 25.0% |
| !! | TGAAAGTTTGGTTTAAAATG+AGG | + | chr6_4:11305332-11305351 | Msa0976980:CDS | 25.0% |
| !!! | TGCATTTTTAGAGATAAAGT+CGG | + | chr6_4:11305369-11305388 | Msa0976980:CDS | 25.0% |
| ! | CTTAAATTCATCATATGTAC+CGG | + | chr6_4:11305408-11305427 | Msa0976980:CDS | 25.0% |
| ! | GTAAGATATTACGCAATTTA+GGG | - | chr6_4:11305585-11305604 | None:intergenic | 25.0% |
| ! | AGTAAGATATTACGCAATTT+AGG | - | chr6_4:11305586-11305605 | None:intergenic | 25.0% |
| !! | ATTGCGTAATATCTTACTTT+TGG | + | chr6_4:11305588-11305607 | Msa0976980:CDS | 25.0% |
| ! | ATATATTTGATCTTGATGCT+TGG | + | chr6_4:11305797-11305816 | Msa0976980:CDS | 25.0% |
| ! | GTTTACCAGAACAAAATTAT+TGG | - | chr6_4:11305924-11305943 | None:intergenic | 25.0% |
| !! | AAGATAATGGTTATCGAAAA+AGG | - | chr6_4:11305957-11305976 | None:intergenic | 25.0% |
| !! | TTTTAATATATTTGCCTGCA+TGG | + | chr6_4:11305976-11305995 | Msa0976980:intron | 25.0% |
| !! | CAATTAACGATTTGGAAAAT+TGG | - | chr6_4:11306037-11306056 | None:intergenic | 25.0% |
| ! | GTAAGATTCAATTAACGATT+TGG | - | chr6_4:11306045-11306064 | None:intergenic | 25.0% |
| ! | TGAGTTTCATCATAATGAAT+CGG | + | chr6_4:11306304-11306323 | Msa0976980:intron | 25.0% |
| !! | TGTAGAGATTCATATTGATT+GGG | + | chr6_4:11306350-11306369 | Msa0976980:intron | 25.0% |
| ! | TTCTCAATACTGTAAGAATA+TGG | - | chr6_4:11306873-11306892 | None:intergenic | 25.0% |
| ! | ATTTTCTGTAGAAGGATTTG+TGG | - | chr6_4:11303348-11303367 | None:intergenic | 30.0% |
| ACAAAAACACACAAAAACAG+AGG | - | chr6_4:11303387-11303406 | None:intergenic | 30.0% | |
| ! | ATCCTATAAAGTGTTTGTGT+CGG | - | chr6_4:11303574-11303593 | None:intergenic | 30.0% |
| AATATTTGAGCATAATCAGG+CGG | + | chr6_4:11303927-11303946 | Msa0976980:intron | 30.0% | |
| ! | GATGAACTGAATGAATTTTG+TGG | + | chr6_4:11304167-11304186 | Msa0976980:intron | 30.0% |
| ATTTACTAACACATAGATCC+CGG | + | chr6_4:11304456-11304475 | Msa0976980:intron | 30.0% | |
| ! | ATATGTGCACAGAACATTTT+TGG | + | chr6_4:11304649-11304668 | Msa0976980:CDS | 30.0% |
| AGCTTAAGCTTGATATTTCT+AGG | + | chr6_4:11304771-11304790 | Msa0976980:CDS | 30.0% | |
| GTTGAAGATGTTTGATGAAT+TGG | + | chr6_4:11304796-11304815 | Msa0976980:CDS | 30.0% | |
| ! | TGAATTGGCTGGTAATTTTT+CGG | + | chr6_4:11304811-11304830 | Msa0976980:CDS | 30.0% |
| GTTAAAGATTCAGAAGTTGA+AGG | + | chr6_4:11304988-11305007 | Msa0976980:CDS | 30.0% | |
| ! | TTTTTCATGTCGTTACAAAC+AGG | + | chr6_4:11305293-11305312 | Msa0976980:CDS | 30.0% |
| AATTCATGTACTGCGAATAT+CGG | - | chr6_4:11305714-11305733 | None:intergenic | 30.0% | |
| TTTCTCTCATCCTTTAATCA+AGG | + | chr6_4:11305732-11305751 | Msa0976980:CDS | 30.0% | |
| TTGAAAGTCTCCTTGATTAA+AGG | - | chr6_4:11305745-11305764 | None:intergenic | 30.0% | |
| AGGTTATAATAACTACAAGC+AGG | - | chr6_4:11305878-11305897 | None:intergenic | 30.0% | |
| ! | ATGTGCCAATAATTTTGTTC+TGG | + | chr6_4:11305916-11305935 | Msa0976980:intron | 30.0% |
| AATGTCAAAAGAAAAGTGGT+TGG | + | chr6_4:11306196-11306215 | Msa0976980:intron | 30.0% | |
| GAGTTTCATCATAATGAATC+GGG | + | chr6_4:11306305-11306324 | Msa0976980:intron | 30.0% | |
| CTGTAGAGATTCATATTGAT+TGG | + | chr6_4:11306349-11306368 | Msa0976980:intron | 30.0% | |
| GTATCGAATAGAGATACAAT+TGG | + | chr6_4:11306382-11306401 | Msa0976980:intron | 30.0% | |
| TTGTAAGATACTGATAACCA+TGG | + | chr6_4:11306411-11306430 | Msa0976980:intron | 30.0% | |
| TTAATTGGATTACCGTAAAG+TGG | + | chr6_4:11306473-11306492 | Msa0976980:intron | 30.0% | |
| AATTAGTGAGTTCCACTTTA+CGG | - | chr6_4:11306488-11306507 | None:intergenic | 30.0% | |
| !! | TGACTTTGTTGTTGAGTAAA+AGG | - | chr6_4:11306585-11306604 | None:intergenic | 30.0% |
| ATACAATCCAAGTATTAGCA+TGG | + | chr6_4:11306637-11306656 | Msa0976980:CDS | 30.0% | |
| TAAATATGTTGACAGCGATA+TGG | + | chr6_4:11306751-11306770 | Msa0976980:CDS | 30.0% | |
| ! | CAAGAGAGTACAAGATTCAA+TGG | + | chr6_4:11303205-11303224 | Msa0976980:exon | 35.0% |
| ACATAGCAGAGATAAAGATC+CGG | - | chr6_4:11303286-11303305 | None:intergenic | 35.0% | |
| ! | GAGTCATCATTTTCTGTAGA+AGG | - | chr6_4:11303356-11303375 | None:intergenic | 35.0% |
| ! | ACGACCCTTTATTTCAGATT+CGG | + | chr6_4:11303766-11303785 | Msa0976980:intron | 35.0% |
| ATATTTGAGCATAATCAGGC+GGG | + | chr6_4:11303928-11303947 | Msa0976980:intron | 35.0% | |
| TGTCTGTGTTAGTGTTTCAT+AGG | - | chr6_4:11304198-11304217 | None:intergenic | 35.0% | |
| AACCTAATCTGTTACAAGCT+CGG | - | chr6_4:11304341-11304360 | None:intergenic | 35.0% | |
| TTACATCATCTTCCTACTAC+TGG | + | chr6_4:11304366-11304385 | Msa0976980:intron | 35.0% | |
| ! | TATCACCTTTTCTAAGTGTG+CGG | - | chr6_4:11304437-11304456 | None:intergenic | 35.0% |
| ACATATGCATTACCAGTAGT+AGG | - | chr6_4:11304635-11304654 | None:intergenic | 35.0% | |
| AAGATGTTTGATGAATTGGC+TGG | + | chr6_4:11304800-11304819 | Msa0976980:CDS | 35.0% | |
| ! | TGTTAATGAGTCACTTGCTA+AGG | + | chr6_4:11305024-11305043 | Msa0976980:CDS | 35.0% |
| CTTGCTAAGGCAAAAAAGAA+CGG | + | chr6_4:11305037-11305056 | Msa0976980:CDS | 35.0% | |
| TTGCTAAGGCAAAAAAGAAC+GGG | + | chr6_4:11305038-11305057 | Msa0976980:CDS | 35.0% | |
| TTTCATCTCTATACTTCTCC+GGG | - | chr6_4:11305150-11305169 | None:intergenic | 35.0% | |
| CTTTCATCTCTATACTTCTC+CGG | - | chr6_4:11305151-11305170 | None:intergenic | 35.0% | |
| AGTATAGAGATGAAAGTCCT+AGG | + | chr6_4:11305155-11305174 | Msa0976980:CDS | 35.0% | |
| ACATGAAAAACATGCTTCCA+TGG | - | chr6_4:11305283-11305302 | None:intergenic | 35.0% | |
| ATGTTGCTGCAATGAAAGTT+TGG | + | chr6_4:11305320-11305339 | Msa0976980:CDS | 35.0% | |
| ! | AGTTTGGTTTAAAATGAGGC+CGG | + | chr6_4:11305336-11305355 | Msa0976980:CDS | 35.0% |
| CAGCATTACATTGAGAATCA+AGG | + | chr6_4:11305463-11305482 | Msa0976980:CDS | 35.0% | |
| CATTGAGAATCAAGGTGATA+AGG | + | chr6_4:11305471-11305490 | Msa0976980:CDS | 35.0% | |
| !! | ACTTTTGGATGATGATGTTG+TGG | + | chr6_4:11305603-11305622 | Msa0976980:CDS | 35.0% |
| AGGTTTGTGGAAGATTGATT+TGG | + | chr6_4:11305642-11305661 | Msa0976980:CDS | 35.0% | |
| !! | TTGTGGAAGATTGATTTGGA+TGG | + | chr6_4:11305646-11305665 | Msa0976980:CDS | 35.0% |
| !! | TGTGGAAGATTGATTTGGAT+GGG | + | chr6_4:11305647-11305666 | Msa0976980:CDS | 35.0% |
| AGAACCGAAACAGATTTCAA+CGG | - | chr6_4:11305686-11305705 | None:intergenic | 35.0% | |
| TATTTGATCTTGATGCTTGG+AGG | + | chr6_4:11305800-11305819 | Msa0976980:CDS | 35.0% | |
| ATAGAGAAGCAAAGAGTAAC+AGG | - | chr6_4:11305898-11305917 | None:intergenic | 35.0% | |
| !!! | GTAGTCAGACACCTTTTTTT+TGG | - | chr6_4:11306235-11306254 | None:intergenic | 35.0% |
| GATCAACATTCAAGAAACCA+TGG | - | chr6_4:11306431-11306450 | None:intergenic | 35.0% | |
| AGAATGAAGACCAGACAATA+TGG | + | chr6_4:11306528-11306547 | Msa0976980:intron | 35.0% | |
| AGACCAGACAATATGGAAAT+CGG | + | chr6_4:11306535-11306554 | Msa0976980:CDS | 35.0% | |
| TAAAAGGTAATCAAACCAGG+TGG | - | chr6_4:11306569-11306588 | None:intergenic | 35.0% | |
| GAGTAAAAGGTAATCAAACC+AGG | - | chr6_4:11306572-11306591 | None:intergenic | 35.0% | |
| TTACTCAACAACAAAGTCAC+TGG | + | chr6_4:11306586-11306605 | Msa0976980:CDS | 35.0% | |
| ATCTCATCCATGCTAATACT+TGG | - | chr6_4:11306647-11306666 | None:intergenic | 35.0% | |
| GCTGCTGTTATTCATTACAA+TGG | + | chr6_4:11306674-11306693 | Msa0976980:CDS | 35.0% | |
| ACAATGGAAACATGAAACCT+TGG | + | chr6_4:11306690-11306709 | Msa0976980:CDS | 35.0% | |
| TTCAAAGCAATATCTAGCCA+AGG | - | chr6_4:11306710-11306729 | None:intergenic | 35.0% | |
| ! | TTTGTCCAGATGTGCAATTT+TGG | + | chr6_4:11306776-11306795 | Msa0976980:CDS | 35.0% |
| ATAAGCCAAAATTGCACATC+TGG | - | chr6_4:11306784-11306803 | None:intergenic | 35.0% | |
| ! | GAGAGTACAAGATTCAATGG+CGG | + | chr6_4:11303208-11303227 | Msa0976980:exon | 40.0% |
| CACCGACACAAACACTTTAT+AGG | + | chr6_4:11303569-11303588 | Msa0976980:intron | 40.0% | |
| GAATGAGTGAACGAATCTTG+CGG | + | chr6_4:11303828-11303847 | Msa0976980:intron | 40.0% | |
| TGTCTATGTCAGTGCTTCTT+AGG | - | chr6_4:11303859-11303878 | None:intergenic | 40.0% | |
| ! | ATCAGAGGGTGTAAGGAATT+AGG | + | chr6_4:11303986-11304005 | Msa0976980:intron | 40.0% |
| ACATATGCACTACCAGTAGT+AGG | - | chr6_4:11304381-11304400 | None:intergenic | 40.0% | |
| CTTATCCGCACACTTAGAAA+AGG | + | chr6_4:11304429-11304448 | Msa0976980:intron | 40.0% | |
| CTTGACACACCTTTGATTAG+AGG | + | chr6_4:11304552-11304571 | Msa0976980:intron | 40.0% | |
| ! | ACACCTTTGATTAGAGGTGT+CGG | + | chr6_4:11304558-11304577 | Msa0976980:intron | 40.0% |
| TTACAGGATCTTCCTACTAC+TGG | + | chr6_4:11304620-11304639 | Msa0976980:intron | 40.0% | |
| CATTGAAATCTGACCCACTT+AGG | + | chr6_4:11304672-11304691 | Msa0976980:CDS | 40.0% | |
| AATCCACTCTTGTCCTAAGT+GGG | - | chr6_4:11304688-11304707 | None:intergenic | 40.0% | |
| AAATCCACTCTTGTCCTAAG+TGG | - | chr6_4:11304689-11304708 | None:intergenic | 40.0% | |
| ATGCTTATGCTGCATATGCT+AGG | + | chr6_4:11304747-11304766 | Msa0976980:CDS | 40.0% | |
| CTCAACACATCCTCATCAAT+CGG | - | chr6_4:11304887-11304906 | None:intergenic | 40.0% | |
| GCAGTTTGAGAAAGAGATCA+AGG | + | chr6_4:11304907-11304926 | Msa0976980:CDS | 40.0% | |
| TGCTAAGGCAAAAAAGAACG+GGG | + | chr6_4:11305039-11305058 | Msa0976980:CDS | 40.0% | |
| CAAACTCTTGGGAACTGATT+TGG | - | chr6_4:11305086-11305105 | None:intergenic | 40.0% | |
| AAACTCGGATCTTCAAACTC+CGG | - | chr6_4:11305181-11305200 | None:intergenic | 40.0% | |
| TAAAGAATGCAGTTGAGCCA+TGG | + | chr6_4:11305263-11305282 | Msa0976980:CDS | 40.0% | |
| ! | TTTAAAATGAGGCCGGTTGA+AGG | + | chr6_4:11305343-11305362 | Msa0976980:CDS | 40.0% |
| AAAAATGCACCTCCTTCAAC+CGG | - | chr6_4:11305358-11305377 | None:intergenic | 40.0% | |
| ATCCAACATCGACAGGTATT+TGG | - | chr6_4:11305533-11305552 | None:intergenic | 40.0% | |
| GAAGATAATCCAACATCGAC+AGG | - | chr6_4:11305540-11305559 | None:intergenic | 40.0% | |
| ! | TGATGATGTTGTGGTGCAAA+AGG | + | chr6_4:11305612-11305631 | Msa0976980:CDS | 40.0% |
| AAAAGGACTTGACAGGTTTG+TGG | + | chr6_4:11305629-11305648 | Msa0976980:CDS | 40.0% | |
| !! | GAAGATTGATTTGGATGGGA+AGG | + | chr6_4:11305651-11305670 | Msa0976980:CDS | 40.0% |
| ! | TCAATCCAAAAGCATGTGCT+TGG | + | chr6_4:11305761-11305780 | Msa0976980:CDS | 40.0% |
| ! | TAAGTCCAAGCACATGCTTT+TGG | - | chr6_4:11305769-11305788 | None:intergenic | 40.0% |
| AAAGCATGTGCTTGGACTTA+CGG | + | chr6_4:11305769-11305788 | Msa0976980:CDS | 40.0% | |
| GCACTGAACATTACCATTAC+TGG | + | chr6_4:11305833-11305852 | Msa0976980:CDS | 40.0% | |
| TTACCATTACTGGCAGAACA+AGG | + | chr6_4:11305843-11305862 | Msa0976980:CDS | 40.0% | |
| TTACCTTGTTCTGCCAGTAA+TGG | - | chr6_4:11305849-11305868 | None:intergenic | 40.0% | |
| GACCAGACAATATGGAAATC+GGG | + | chr6_4:11306536-11306555 | Msa0976980:CDS | 40.0% | |
| ACCAGACAATATGGAAATCG+GGG | + | chr6_4:11306537-11306556 | Msa0976980:CDS | 40.0% | |
| CAAAGTCACTGGACAAATCA+TGG | + | chr6_4:11306597-11306616 | Msa0976980:CDS | 40.0% | |
| GACAAATCATGGCATGTACT+TGG | + | chr6_4:11306608-11306627 | Msa0976980:CDS | 40.0% | |
| TCATGGCATGTACTTGGATT+AGG | + | chr6_4:11306614-11306633 | Msa0976980:CDS | 40.0% | |
| AAGAATATGGTAAGCCACAG+TGG | - | chr6_4:11306860-11306879 | None:intergenic | 40.0% | |
| ! | TGTTAAATGTTGCTTGCCAC+AGG | + | chr6_4:11306900-11306919 | Msa0976980:three_prime_UTR | 40.0% |
| GTCAACAACGAATTCTCAGA+TGG | - | chr6_4:11306968-11306987 | None:intergenic | 40.0% | |
| GACAATTGTCAGATGCTACA+AGG | + | chr6_4:11306985-11307004 | Msa0976980:three_prime_UTR | 40.0% | |
| CAAGATTCAATGGCGGTTTC+TGG | + | chr6_4:11303215-11303234 | Msa0976980:exon | 45.0% | |
| TCCGTGGATTCTTCTCTTAC+CGG | + | chr6_4:11303264-11303283 | Msa0976980:CDS | 45.0% | |
| TCCGGTAAGAGAAGAATCCA+CGG | - | chr6_4:11303268-11303287 | None:intergenic | 45.0% | |
| GTGGTGTAACCTATGAAGCA+CGG | + | chr6_4:11303545-11303564 | Msa0976980:intron | 45.0% | |
| ! | CGGTGTCAATGTCTTAGTGT+CGG | - | chr6_4:11303888-11303907 | None:intergenic | 45.0% |
| CGACACTAAGACATTGACAC+CGG | + | chr6_4:11303886-11303905 | Msa0976980:intron | 45.0% | |
| ! | TAATCTAAGGTGTGGCACAG+TGG | - | chr6_4:11304303-11304322 | None:intergenic | 45.0% |
| TGTGCCACACCTTAGATTAG+AGG | + | chr6_4:11304304-11304323 | Msa0976980:intron | 45.0% | |
| TGCCGAGCTTGTAACAGATT+AGG | + | chr6_4:11304336-11304355 | Msa0976980:intron | 45.0% | |
| ! | GTACCGACACCTCTAATCAA+AGG | - | chr6_4:11304564-11304583 | None:intergenic | 45.0% |
| !! | TAGAGGTGTCGGTACTATAG+AGG | + | chr6_4:11304569-11304588 | Msa0976980:intron | 45.0% |
| AACAATGACGCTCTGTACGT+TGG | - | chr6_4:11304851-11304870 | None:intergenic | 45.0% | |
| ! | CAGAGCGTCATTGTTTGAGT+CGG | + | chr6_4:11304856-11304875 | Msa0976980:CDS | 45.0% |
| CGATTGATGAGGATGTGTTG+AGG | + | chr6_4:11304885-11304904 | Msa0976980:CDS | 45.0% | |
| AGGATAGAGTGAAGATTGCG+AGG | + | chr6_4:11304927-11304946 | Msa0976980:CDS | 45.0% | |
| TGCGAGGATGATGATTGTTG+AGG | + | chr6_4:11304943-11304962 | Msa0976980:CDS | 45.0% | |
| TCCCAAGAGTTTGCATTGCT+TGG | + | chr6_4:11305093-11305112 | Msa0976980:CDS | 45.0% | |
| GCCAAGCAATGCAAACTCTT+GGG | - | chr6_4:11305097-11305116 | None:intergenic | 45.0% | |
| AGCCAAGCAATGCAAACTCT+TGG | - | chr6_4:11305098-11305117 | None:intergenic | 45.0% | |
| GTTTGCATTGCTTGGCTATG+AGG | + | chr6_4:11305101-11305120 | Msa0976980:CDS | 45.0% | |
| ! | GGGTGAGAAGATTTTGAACC+CGG | + | chr6_4:11305129-11305148 | Msa0976980:CDS | 45.0% |
| TAGAGATGAAAGTCCTAGGC+CGG | + | chr6_4:11305159-11305178 | Msa0976980:CDS | 45.0% | |
| AGACAACGTGATAGCTGTGT+CGG | + | chr6_4:11305222-11305241 | Msa0976980:CDS | 45.0% | |
| ! | CATCATATGTACCGGTGTTG+AGG | + | chr6_4:11305416-11305435 | Msa0976980:CDS | 45.0% |
| TGCCAAATACCTGTCGATGT+TGG | + | chr6_4:11305528-11305547 | Msa0976980:CDS | 45.0% | |
| ! | CGCAATTTAGGGTACATCTC+TGG | - | chr6_4:11305574-11305593 | None:intergenic | 45.0% |
| GATTTGGATGGGAAGGTGAA+TGG | + | chr6_4:11305658-11305677 | Msa0976980:CDS | 45.0% | |
| !! | GGTGCCGTTGAAATCTGTTT+CGG | + | chr6_4:11305679-11305698 | Msa0976980:CDS | 45.0% |
| TCATGTACTGCGAATATCGG+TGG | - | chr6_4:11305711-11305730 | None:intergenic | 45.0% | |
| ! | TCTCGATTCGATAACCATGC+AGG | - | chr6_4:11305993-11306012 | None:intergenic | 45.0% |
| TGTCTGACTACACTGAGTTC+AGG | + | chr6_4:11306244-11306263 | Msa0976980:intron | 45.0% | |
| TCCCCGATTTCCATATTGTC+TGG | - | chr6_4:11306541-11306560 | None:intergenic | 45.0% | |
| ! | TTGAGATGAAGTGTCCACTG+TGG | + | chr6_4:11306843-11306862 | Msa0976980:three_prime_UTR | 45.0% |
| GACAATGCAGAACTTTCCTG+TGG | - | chr6_4:11306919-11306938 | None:intergenic | 45.0% | |
| !! | TCAATGGCGGTTTCTGGTAG+AGG | + | chr6_4:11303221-11303240 | Msa0976980:exon | 50.0% |
| !! | GTTTCTGGTAGAGGAAGCAG+AGG | + | chr6_4:11303230-11303249 | Msa0976980:CDS | 50.0% |
| TCCTTACACCCTCTGATGCA+CGG | - | chr6_4:11303983-11304002 | None:intergenic | 50.0% | |
| ! | TGTCTCGCATGTGTCGTTGT+CGG | + | chr6_4:11304270-11304289 | Msa0976980:intron | 50.0% |
| ! | GGCACCTCTAATCTAAGGTG+TGG | - | chr6_4:11304311-11304330 | None:intergenic | 50.0% |
| ! | GCACTGGCACCTCTAATCTA+AGG | - | chr6_4:11304316-11304335 | None:intergenic | 50.0% |
| TGACCCACTTAGGACAAGAG+TGG | + | chr6_4:11304682-11304701 | Msa0976980:CDS | 50.0% | |
| GCGTCATTGTTTGAGTCGGA+TGG | + | chr6_4:11304860-11304879 | Msa0976980:CDS | 50.0% | |
| GGCAAAAAAGAACGGGGCAT+TGG | + | chr6_4:11305045-11305064 | Msa0976980:CDS | 50.0% | |
| TTGCTTGGCTATGAGGCTGA+TGG | + | chr6_4:11305108-11305127 | Msa0976980:CDS | 50.0% | |
| TGCTTGGCTATGAGGCTGAT+GGG | + | chr6_4:11305109-11305128 | Msa0976980:CDS | 50.0% | |
| AAAATGAGGCCGGTTGAAGG+AGG | + | chr6_4:11305346-11305365 | Msa0976980:CDS | 50.0% | |
| GTGGTGCAAAAGGACTTGAC+AGG | + | chr6_4:11305622-11305641 | Msa0976980:CDS | 50.0% | |
| TCTGGTAGAGGAAGCAGAGG+TGG | + | chr6_4:11303233-11303252 | Msa0976980:CDS | 55.0% | |
| AGAGGTGGATCTACTCTCCG+TGG | + | chr6_4:11303248-11303267 | Msa0976980:CDS | 55.0% | |
| ! | TGTCGGTGTCCGTGCTTCAT+AGG | - | chr6_4:11303557-11303576 | None:intergenic | 55.0% |
| AGCATAATCAGGCGGGACAC+TGG | + | chr6_4:11303935-11303954 | Msa0976980:intron | 55.0% | |
| CTGGAACACAGGACACACCA+AGG | + | chr6_4:11303954-11303973 | Msa0976980:intron | 55.0% | |
| ! | CAAGGTGTCCGTGCATCAGA+GGG | + | chr6_4:11303972-11303991 | Msa0976980:intron | 55.0% |
| ! | TCCGTGCATCAGAGGGTGTA+AGG | + | chr6_4:11303979-11303998 | Msa0976980:intron | 55.0% |
| TGTTACAAGCTCGGCAGCAC+TGG | - | chr6_4:11304332-11304351 | None:intergenic | 55.0% | |
| GTCGGATGGTCCGATTGATG+AGG | + | chr6_4:11304874-11304893 | Msa0976980:CDS | 55.0% | |
| GGATCTTCAAACTCCGGCCT+AGG | - | chr6_4:11305175-11305194 | None:intergenic | 55.0% | |
| CAACGTGATAGCTGTGTCGG+TGG | + | chr6_4:11305225-11305244 | Msa0976980:CDS | 55.0% | |
| ! | GTCGGTGGTGGTTAGATCTG+TGG | + | chr6_4:11305240-11305259 | Msa0976980:CDS | 55.0% |
| ! | ACCGGTGTTGAGGCAAGTTG+AGG | + | chr6_4:11305426-11305445 | Msa0976980:CDS | 55.0% |
| GCCTCAACTTGCCTCAACAC+CGG | - | chr6_4:11305430-11305449 | None:intergenic | 55.0% | |
| CCTCTGATGCACGGACACCT+TGG | - | chr6_4:11303974-11303993 | None:intergenic | 60.0% | |
| ! | CCAAGGTGTCCGTGCATCAG+AGG | + | chr6_4:11303971-11303990 | Msa0976980:intron | 60.0% |
| CTAAGGTGTGGCACAGTGGC+AGG | - | chr6_4:11304299-11304318 | None:intergenic | 60.0% | |
| ! | CGTGATAGCTGTGTCGGTGG+TGG | + | chr6_4:11305228-11305247 | Msa0976980:CDS | 60.0% |
| AAATCGGGGACGCTTCCACC+TGG | + | chr6_4:11306551-11306570 | Msa0976980:CDS | 60.0% | |
| CAGGCGGGACACTGGAACAC+AGG | + | chr6_4:11303943-11303962 | Msa0976980:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 11303020 | 11307193 | 11303020 | ID=Msa0976980;Name=Msa0976980 |
| chr6_4 | mRNA | 11303020 | 11307193 | 11303020 | ID=Msa0976980-mRNA-1;Parent=Msa0976980;Name=Msa0976980-mRNA-1;_AED=0.00;_eAED=0.00;_QI=204|1|1|1|1|1|3|388|555 |
| chr6_4 | exon | 11303020 | 11303376 | 11303020 | ID=Msa0976980-mRNA-1:exon:4083;Parent=Msa0976980-mRNA-1 |
| chr6_4 | exon | 11304626 | 11305864 | 11304626 | ID=Msa0976980-mRNA-1:exon:4084;Parent=Msa0976980-mRNA-1 |
| chr6_4 | exon | 11306530 | 11307193 | 11306530 | ID=Msa0976980-mRNA-1:exon:4085;Parent=Msa0976980-mRNA-1 |
| chr6_4 | five_prime_UTR | 11303020 | 11303223 | 11303020 | ID=Msa0976980-mRNA-1:five_prime_utr;Parent=Msa0976980-mRNA-1 |
| chr6_4 | CDS | 11303224 | 11303376 | 11303224 | ID=Msa0976980-mRNA-1:cds;Parent=Msa0976980-mRNA-1 |
| chr6_4 | CDS | 11304626 | 11305864 | 11304626 | ID=Msa0976980-mRNA-1:cds;Parent=Msa0976980-mRNA-1 |
| chr6_4 | CDS | 11306530 | 11306805 | 11306530 | ID=Msa0976980-mRNA-1:cds;Parent=Msa0976980-mRNA-1 |
| chr6_4 | three_prime_UTR | 11306806 | 11307193 | 11306806 | ID=Msa0976980-mRNA-1:three_prime_utr;Parent=Msa0976980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
