AlfalfaGEDB | Msa0976980

M. sativa cultivar zhongmu-4 / Msa0976980

KEGG: K13648
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0047262 GO:0097708 GO:0098791
PFAM: PF01501.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0976980	XP_013451171.1	99.459	555	3	0	1	555	1	555	0.0	1153

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0976980	sp\|Q9FWA4\|GAUT9_ARATH	74.679	545	138	0	11	555	17	561	0.0	842

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0976980	G7ZV05	99.459	555	3	0	1	555	1	555	0.0	1153

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0097950	Msa0976980	0.812115	4.985600e-51	-8.615850e-47
Msa0907560	Msa0976980	0.978079	4.420319e-145	-8.615850e-47
Msa0976980	Msa1198880	0.808451	3.077796e-50	-8.615850e-47
Msa0976980	Msa1262960	0.817948	2.530034e-52	-8.615850e-47
Msa0976980	Msa1435770	0.806871	6.664007e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0976980	MtrunA17_Chr6g0456071	99.459	555	3	0	1	555	1	555	0.0	1153
Msa0976980	MtrunA17_Chr7g0235161	65.631	547	172	6	23	555	16	560	0.0	727
Msa0976980	MtrunA17_Chr8g0351091	47.983	471	225	8	85	553	158	610	1.00e-153	453
Msa0976980	MtrunA17_Chr7g0246371	48.723	470	221	8	85	553	212	662	2.93e-147	439
Msa0976980	MtrunA17_Chr3g0138381	51.036	386	187	2	169	553	279	663	2.45e-144	431
Msa0976980	MtrunA17_Chr2g0290961	49.261	406	201	4	149	553	264	665	5.19e-144	430
Msa0976980	MtrunA17_Chr8g0383241	46.814	408	207	5	149	554	91	490	5.21e-138	409
Msa0976980	MtrunA17_Chr2g0283461	43.182	484	244	10	78	553	72	532	2.09e-133	399
Msa0976980	MtrunA17_Chr4g0061711	45.455	407	213	5	149	551	131	532	2.43e-125	378
Msa0976980	MtrunA17_Chr2g0308241	44.039	411	221	5	148	554	130	535	2.70e-120	365

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0976980	AT3G02350.1	74.679	545	138	0	11	555	17	561	0.0	842
Msa0976980	AT3G25140.1	65.897	563	180	8	1	555	1	559	0.0	751
Msa0976980	AT3G61130.1	51.980	404	186	6	153	553	273	671	2.75e-152	452
Msa0976980	AT5G47780.1	50.390	385	187	2	170	554	235	615	2.22e-145	432
Msa0976980	AT4G38270.2	49.490	392	192	3	167	553	284	674	5.75e-142	426
Msa0976980	AT4G38270.1	49.490	392	192	3	167	553	288	678	6.53e-142	426
Msa0976980	AT1G18580.1	47.537	406	206	5	150	551	132	534	6.60e-133	398
Msa0976980	AT2G46480.3	46.798	406	213	3	148	551	132	536	8.31e-131	392
Msa0976980	AT2G46480.4	46.798	406	213	3	148	551	145	549	1.66e-130	392
Msa0976980	AT2G20810.1	42.917	480	249	8	80	553	75	535	1.03e-127	384

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Find 121 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGACTTGACAGGTTTG+TGG	0.514967	6_4:+11305629	Msa0976980:CDS
AAAATGAGGCCGGTTGAAGG+AGG	0.624677	6_4:+11305346	Msa0976980:CDS
AAACTCGGATCTTCAAACTC+CGG	0.646387	6_4:-11305178	None:intergenic
AAAGCATGTGCTTGGACTTA+CGG	0.428521	6_4:+11305769	Msa0976980:CDS
AAATCCACTCTTGTCCTAAG+TGG	0.522559	6_4:-11304686	None:intergenic
AAATCGGGGACGCTTCCACC+TGG	0.569876	6_4:+11306551	Msa0976980:CDS
AACAATGACGCTCTGTACGT+TGG	0.601791	6_4:-11304848	None:intergenic
AAGAATATGGTAAGCCACAG+TGG	0.657602	6_4:-11306857	None:intergenic
AAGATGTTTGATGAATTGGC+TGG	0.598245	6_4:+11304800	Msa0976980:CDS
AATCCACTCTTGTCCTAAGT+GGG	0.603135	6_4:-11304685	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAAAACACACAAAAACAG+AGG	-	chr6_4:11303387-11303406	None:intergenic	30.0%
AATATTTGAGCATAATCAGG+CGG	+	chr6_4:11303927-11303946	Msa0976980:intron	30.0%
ATTTACTAACACATAGATCC+CGG	+	chr6_4:11304456-11304475	Msa0976980:intron	30.0%
AGCTTAAGCTTGATATTTCT+AGG	+	chr6_4:11304771-11304790	Msa0976980:CDS	30.0%
GTTGAAGATGTTTGATGAAT+TGG	+	chr6_4:11304796-11304815	Msa0976980:CDS	30.0%
GTTAAAGATTCAGAAGTTGA+AGG	+	chr6_4:11304988-11305007	Msa0976980:CDS	30.0%
AATTCATGTACTGCGAATAT+CGG	-	chr6_4:11305714-11305733	None:intergenic	30.0%
TTTCTCTCATCCTTTAATCA+AGG	+	chr6_4:11305732-11305751	Msa0976980:CDS	30.0%
TTGAAAGTCTCCTTGATTAA+AGG	-	chr6_4:11305745-11305764	None:intergenic	30.0%
AGGTTATAATAACTACAAGC+AGG	-	chr6_4:11305878-11305897	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	11303020	11307193	11303020	ID=Msa0976980;Name=Msa0976980
chr6_4	mRNA	11303020	11307193	11303020	ID=Msa0976980-mRNA-1;Parent=Msa0976980;Name=Msa0976980-mRNA-1;_AED=0.00;_eAED=0.00;_QI=204\|1\|1\|1\|1\|1\|3\|388\|555
chr6_4	exon	11303020	11303376	11303020	ID=Msa0976980-mRNA-1:exon:4083;Parent=Msa0976980-mRNA-1
chr6_4	exon	11304626	11305864	11304626	ID=Msa0976980-mRNA-1:exon:4084;Parent=Msa0976980-mRNA-1
chr6_4	exon	11306530	11307193	11306530	ID=Msa0976980-mRNA-1:exon:4085;Parent=Msa0976980-mRNA-1
chr6_4	five_prime_UTR	11303020	11303223	11303020	ID=Msa0976980-mRNA-1:five_prime_utr;Parent=Msa0976980-mRNA-1
chr6_4	CDS	11303224	11303376	11303224	ID=Msa0976980-mRNA-1:cds;Parent=Msa0976980-mRNA-1
chr6_4	CDS	11304626	11305864	11304626	ID=Msa0976980-mRNA-1:cds;Parent=Msa0976980-mRNA-1
chr6_4	CDS	11306530	11306805	11306530	ID=Msa0976980-mRNA-1:cds;Parent=Msa0976980-mRNA-1
chr6_4	three_prime_UTR	11306806	11307193	11306806	ID=Msa0976980-mRNA-1:three_prime_utr;Parent=Msa0976980-mRNA-1

Gene Sequence

>Msa0976980

ATGGCGGTTTCTGGTAGAGGAAGCAGAGGTGGATCTACTCTCCGTGGATTCTTCTCTTACCGGATCTTTATCTCTGCTATGTTCTCTCTTCTTTTCATTGCAACTCTCTCTGTTCTATTCACCACAAATCCTTCTACAGAAAATGATGACTCTGATCTTCCTACTACTGGTAATGCATATGTGCACAGAACATTTTTGGCATTGAAATCTGACCCACTTAGGACAAGAGTGGATTTGATACATCAACAAGCTAAAGATCATATTTCATTAGTGAATGCTTATGCTGCATATGCTAGGAAGCTTAAGCTTGATATTTCTAGGCAGTTGAAGATGTTTGATGAATTGGCTGGTAATTTTTCGGATATTGCTTTGAAACCAACGTACAGAGCGTCATTGTTTGAGTCGGATGGTCCGATTGATGAGGATGTGTTGAGGCAGTTTGAGAAAGAGATCAAGGATAGAGTGAAGATTGCGAGGATGATGATTGTTGAGGCGAAAGAGAATTATGATACACAGTTAAAGATTCAGAAGTTGAAGGATACTATATTTGCTGTTAATGAGTCACTTGCTAAGGCAAAAAAGAACGGGGCATTGGCGAGCTTGATTTCTGCCAAATCAGTTCCCAAGAGTTTGCATTGCTTGGCTATGAGGCTGATGGGTGAGAAGATTTTGAACCCGGAGAAGTATAGAGATGAAAGTCCTAGGCCGGAGTTTGAAGATCCGAGTTTGTATCATTATGCAATATTCTCAGACAACGTGATAGCTGTGTCGGTGGTGGTTAGATCTGTGGTAAAGAATGCAGTTGAGCCATGGAAGCATGTTTTTCATGTCGTTACAAACAGGATGAATGTTGCTGCAATGAAAGTTTGGTTTAAAATGAGGCCGGTTGAAGGAGGTGCATTTTTAGAGATAAAGTCGGTTGACGAATTCACGTTCTTAAATTCATCATATGTACCGGTGTTGAGGCAAGTTGAGGCAGCAAAAATGCAGCAGCATTACATTGAGAATCAAGGTGATAAGGCTACAAATGATGCACGTGACATGAAACTTAGAAATGCCAAATACCTGTCGATGTTGGATTATCTTCAGTTTTATTTGCCAGAGATGTACCCTAAATTGCGTAATATCTTACTTTTGGATGATGATGTTGTGGTGCAAAAGGACTTGACAGGTTTGTGGAAGATTGATTTGGATGGGAAGGTGAATGGTGCCGTTGAAATCTGTTTCGGTTCTTTCCACCGATATTCGCAGTACATGAATTTCTCTCATCCTTTAATCAAGGAGACTTTCAATCCAAAAGCATGTGCTTGGACTTACGGTATGAATATATTTGATCTTGATGCTTGGAGGCGTGAAAAATGCACTGAACATTACCATTACTGGCAGAACAAGAATGAAGACCAGACAATATGGAAATCGGGGACGCTTCCACCTGGTTTGATTACCTTTTACTCAACAACAAAGTCACTGGACAAATCATGGCATGTACTTGGATTAGGATACAATCCAAGTATTAGCATGGATGAGATCAACAATGCTGCTGTTATTCATTACAATGGAAACATGAAACCTTGGCTAGATATTGCTTTGAATCAATACAAAAATCTTTGGACTAAATATGTTGACAGCGATATGGAGTTTGTCCAGATGTGCAATTTTGGCTTATAG

Protein sequence

>Msa0976980

MAVSGRGSRGGSTLRGFFSYRIFISAMFSLLFIATLSVLFTTNPSTENDDSDLPTTGNAYVHRTFLALKSDPLRTRVDLIHQQAKDHISLVNAYAAYARKLKLDISRQLKMFDELAGNFSDIALKPTYRASLFESDGPIDEDVLRQFEKEIKDRVKIARMMIVEAKENYDTQLKIQKLKDTIFAVNESLAKAKKNGALASLISAKSVPKSLHCLAMRLMGEKILNPEKYRDESPRPEFEDPSLYHYAIFSDNVIAVSVVVRSVVKNAVEPWKHVFHVVTNRMNVAAMKVWFKMRPVEGGAFLEIKSVDEFTFLNSSYVPVLRQVEAAKMQQHYIENQGDKATNDARDMKLRNAKYLSMLDYLQFYLPEMYPKLRNILLLDDDVVVQKDLTGLWKIDLDGKVNGAVEICFGSFHRYSQYMNFSHPLIKETFNPKACAWTYGMNIFDLDAWRREKCTEHYHYWQNKNEDQTIWKSGTLPPGLITFYSTTKSLDKSWHVLGLGYNPSISMDEINNAAVIHYNGNMKPWLDIALNQYKNLWTKYVDSDMEFVQMCNFGL*