Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0912420 | XP_024642177.1 | 79.412 | 68 | 13 | 1 | 38 | 104 | 166 | 233 | 4.51e-28 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0782080 | Msa0912420 | 0.800692 | 1.279271e-48 | -8.615850e-47 |
| Msa0815320 | Msa0912420 | 0.807377 | 5.207417e-50 | -8.615850e-47 |
| Msa0818010 | Msa0912420 | 0.815018 | 1.146151e-51 | -8.615850e-47 |
| Msa0818030 | Msa0912420 | 0.815878 | 7.375074e-52 | -8.615850e-47 |
| Msa0352010 | Msa0912420 | 0.802812 | 4.698149e-49 | -8.615850e-47 |
| Msa0912420 | Msa1006250 | 0.806707 | 7.217918e-50 | -8.615850e-47 |
| Msa0912420 | Msa1359820 | 0.809498 | 1.836709e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0912420 | MtrunA17_Chr6g0464631 | 73.239 | 71 | 18 | 1 | 38 | 107 | 1137 | 1207 | 5.38e-31 | 118 |
| Msa0912420 | MtrunA17_Chr6g0465251 | 79.412 | 68 | 13 | 1 | 38 | 104 | 424 | 491 | 1.54e-30 | 115 |
| Msa0912420 | MtrunA17_Chr6g0465291 | 73.239 | 71 | 18 | 1 | 38 | 107 | 1136 | 1206 | 2.50e-30 | 116 |
| Msa0912420 | MtrunA17_Chr6g0465181 | 77.273 | 66 | 14 | 1 | 38 | 103 | 1078 | 1142 | 9.24e-30 | 114 |
| Msa0912420 | MtrunA17_Chr6g0465151 | 75.385 | 65 | 16 | 0 | 39 | 103 | 841 | 905 | 1.75e-29 | 113 |
| Msa0912420 | MtrunA17_Chr6g0465231 | 74.242 | 66 | 17 | 0 | 38 | 103 | 1049 | 1114 | 1.30e-28 | 111 |
| Msa0912420 | MtrunA17_Chr6g0465131 | 72.727 | 66 | 18 | 0 | 38 | 103 | 1054 | 1119 | 1.42e-28 | 111 |
| Msa0912420 | MtrunA17_Chr6g0465211 | 69.697 | 66 | 20 | 0 | 38 | 103 | 1026 | 1091 | 4.70e-27 | 106 |
| Msa0912420 | MtrunA17_Chr6g0455811 | 59.615 | 52 | 21 | 0 | 41 | 92 | 898 | 949 | 1.95e-16 | 76.3 |
| Msa0912420 | MtrunA17_Chr6g0455671 | 57.692 | 52 | 22 | 0 | 41 | 92 | 858 | 909 | 2.99e-15 | 72.8 |
| Msa0912420 | MtrunA17_Chr6g0455801 | 50.820 | 61 | 30 | 0 | 41 | 101 | 869 | 929 | 5.28e-15 | 72.0 |
| Msa0912420 | MtrunA17_Chr6g0455721 | 59.184 | 49 | 20 | 0 | 44 | 92 | 881 | 929 | 2.04e-14 | 70.5 |
| Msa0912420 | MtrunA17_Chr6g0455701 | 59.184 | 49 | 20 | 0 | 44 | 92 | 893 | 941 | 2.63e-14 | 70.1 |
| Msa0912420 | MtrunA17_Chr6g0455851 | 61.364 | 44 | 17 | 0 | 49 | 92 | 953 | 996 | 7.30e-14 | 68.9 |
| Msa0912420 | MtrunA17_Chr6g0455751 | 57.143 | 49 | 21 | 0 | 44 | 92 | 684 | 732 | 8.31e-14 | 68.6 |
| Msa0912420 | MtrunA17_Chr6g0455691 | 55.769 | 52 | 23 | 0 | 41 | 92 | 841 | 892 | 9.88e-14 | 68.2 |
| Msa0912420 | MtrunA17_Chr6g0455871 | 57.778 | 45 | 19 | 0 | 48 | 92 | 133 | 177 | 1.06e-13 | 66.2 |
| Msa0912420 | MtrunA17_Chr6g0455861 | 52.727 | 55 | 25 | 1 | 39 | 92 | 431 | 485 | 2.80e-13 | 67.0 |
| Msa0912420 | MtrunA17_Chr6g0455781 | 59.091 | 44 | 18 | 0 | 49 | 92 | 802 | 845 | 3.34e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGGATTTATTATAGGCTTC+TGG | 0.207859 | 6_2:+21005044 | Msa0912420:CDS |
| CTGACATTCGGATTTATTAT+AGG | 0.225563 | 6_2:+21005037 | Msa0912420:CDS |
| AGTGGAGATGGAGAATTTAT+TGG | 0.243133 | 6_2:-21006330 | None:intergenic |
| TTCATATATTTATTTATTGT+TGG | 0.299352 | 6_2:+21006223 | Msa0912420:CDS |
| TGTATTTCATGTTTACGTTT+TGG | 0.301463 | 6_2:-21006267 | None:intergenic |
| CAATCCTAATCAAGCGTTCT+TGG | 0.310650 | 6_2:+21005080 | Msa0912420:CDS |
| ATAGGCTTCTGGGGAGTGTT+TGG | 0.327379 | 6_2:+21005055 | Msa0912420:CDS |
| CGACAGTGATGATTCGTTTA+CGG | 0.335071 | 6_2:+21006415 | Msa0912420:CDS |
| CGGATTTATTATAGGCTTCT+GGG | 0.372060 | 6_2:+21005045 | Msa0912420:CDS |
| CAACTGCGACGATGACGGTT+AGG | 0.373493 | 6_2:-21006356 | None:intergenic |
| TCGTCTTGAACTTCTACTTT+TGG | 0.375362 | 6_2:-21004977 | None:intergenic |
| GATGGAGAATTTATTGGAGA+TGG | 0.378372 | 6_2:-21006324 | None:intergenic |
| CCTAATGGTGGCCTTTCCAT+AGG | 0.399168 | 6_2:-21003900 | None:intergenic |
| GTCTCCAAGAACGCTTGATT+AGG | 0.405437 | 6_2:-21005084 | None:intergenic |
| TGATAGCCCTCTCCTCCTAA+TGG | 0.408444 | 6_2:-21003915 | None:intergenic |
| GAAAAGAGCTATCCGTTAGA+TGG | 0.411965 | 6_2:+21003870 | Msa0912420:CDS |
| GTCGGAGAGGGATGCGGAGG+TGG | 0.425001 | 6_2:-21006396 | None:intergenic |
| ACGATGACGGTTAGGGGAAG+TGG | 0.435256 | 6_2:-21006348 | None:intergenic |
| GATTCGTTTACGGCAAAGTC+AGG | 0.452211 | 6_2:+21006425 | Msa0912420:CDS |
| CTAATGGTGGCCTTTCCATA+GGG | 0.469376 | 6_2:-21003899 | None:intergenic |
| ACGGTTAGGGGAAGTGGAGA+TGG | 0.469433 | 6_2:-21006342 | None:intergenic |
| ATTTATTTATTGTTGGAATG+TGG | 0.483136 | 6_2:+21006230 | Msa0912420:CDS |
| AACTGCGACGATGACGGTTA+GGG | 0.493714 | 6_2:-21006355 | None:intergenic |
| GTTAGATGGAGCCGCCCCTA+TGG | 0.503562 | 6_2:+21003884 | Msa0912420:CDS |
| CCTATGGAAAGGCCACCATT+AGG | 0.503613 | 6_2:+21003900 | Msa0912420:CDS |
| AAATATATGAAACTTTGAAA+AGG | 0.512958 | 6_2:-21006211 | None:intergenic |
| TGCGGAGGTGGTGCATTTAG+CGG | 0.514356 | 6_2:-21006384 | None:intergenic |
| GAAGATTTGTTTCTCAATCG+TGG | 0.521950 | 6_2:+21005001 | Msa0912420:CDS |
| ATCACTGTCGGAGAGGGATG+CGG | 0.530399 | 6_2:-21006402 | None:intergenic |
| CGAATCATCACTGTCGGAGA+GGG | 0.547965 | 6_2:-21006408 | None:intergenic |
| ACGAATCATCACTGTCGGAG+AGG | 0.552250 | 6_2:-21006409 | None:intergenic |
| GGAGAGGGCTATCAACGAGA+TGG | 0.576014 | 6_2:+21003924 | Msa0912420:CDS |
| AGGCCACCATTAGGAGGAGA+GGG | 0.592101 | 6_2:+21003909 | Msa0912420:CDS |
| ACTGCGACGATGACGGTTAG+GGG | 0.593322 | 6_2:-21006354 | None:intergenic |
| ATGGAGCCGCCCCTATGGAA+AGG | 0.595398 | 6_2:+21003889 | Msa0912420:CDS |
| GGATTTATTATAGGCTTCTG+GGG | 0.603598 | 6_2:+21005046 | Msa0912420:CDS |
| ATGGAAAGGCCACCATTAGG+AGG | 0.603859 | 6_2:+21003903 | Msa0912420:CDS |
| ATAGGGGCGGCTCCATCTAA+CGG | 0.608362 | 6_2:-21003882 | None:intergenic |
| TAGCCCTCTCCTCCTAATGG+TGG | 0.614460 | 6_2:-21003912 | None:intergenic |
| AGTACCAACTGCGACGATGA+CGG | 0.617883 | 6_2:-21006361 | None:intergenic |
| AAGGCCACCATTAGGAGGAG+AGG | 0.621029 | 6_2:+21003908 | Msa0912420:CDS |
| CTAACCGTCATCGTCGCAGT+TGG | 0.633661 | 6_2:+21006357 | Msa0912420:CDS |
| CGTAAACGAATCATCACTGT+CGG | 0.648301 | 6_2:-21006414 | None:intergenic |
| ACTGTCGGAGAGGGATGCGG+AGG | 0.652671 | 6_2:-21006399 | None:intergenic |
| TAATGGTGGCCTTTCCATAG+GGG | 0.663326 | 6_2:-21003898 | None:intergenic |
| TGGTGGCCTTTCCATAGGGG+CGG | 0.663496 | 6_2:-21003895 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGTGAAAATAATAAAAAT+GGG | - | chr6_2:21003967-21003986 | None:intergenic | 10.0% |
| !! | TTTAGTGAAAATAATAAAAA+TGG | - | chr6_2:21003968-21003987 | None:intergenic | 10.0% |
| !!! | ATTTGATTTTATATTCTATT+TGG | + | chr6_2:21004191-21004210 | Msa0912420:intron | 10.0% |
| !! | TTCATATATTTATTTATTGT+TGG | + | chr6_2:21006223-21006242 | Msa0912420:CDS | 10.0% |
| !!! | TTTTGTGAAAATAATCAAAT+GGG | - | chr6_2:21004122-21004141 | None:intergenic | 15.0% |
| !!! | TACTTTAAAGTTTATTATCT+TGG | + | chr6_2:21004154-21004173 | Msa0912420:intron | 15.0% |
| !! | ATTATCTTGGTATTATTAAA+TGG | + | chr6_2:21004167-21004186 | Msa0912420:intron | 15.0% |
| !!! | ATATATTTTCTTTAAAGTTG+TGG | + | chr6_2:21004253-21004272 | Msa0912420:intron | 15.0% |
| !!! | GAGTTTATTACATTTTTATA+CGG | + | chr6_2:21004375-21004394 | Msa0912420:intron | 15.0% |
| !!! | ATATTTAAAATAATATCCAC+TGG | - | chr6_2:21004810-21004829 | None:intergenic | 15.0% |
| !! | TCTCTTTGTAATATATTATA+TGG | + | chr6_2:21005815-21005834 | Msa0912420:intron | 15.0% |
| !! | TTTATTTATGCAATAAACAT+TGG | + | chr6_2:21005917-21005936 | Msa0912420:intron | 15.0% |
| !!! | AAATATATGAAACTTTGAAA+AGG | - | chr6_2:21006214-21006233 | None:intergenic | 15.0% |
| !!! | CTTTTGTGAAAATAATCAAA+TGG | - | chr6_2:21004123-21004142 | None:intergenic | 20.0% |
| !!! | TTGATTATTTTCACAAAAGT+TGG | + | chr6_2:21004124-21004143 | Msa0912420:intron | 20.0% |
| !!! | AAGATGTAAATATGTCATTT+TGG | + | chr6_2:21004701-21004720 | Msa0912420:intron | 20.0% |
| !! | GAAAAATATTCAAAATACAG+AGG | + | chr6_2:21004768-21004787 | Msa0912420:intron | 20.0% |
| !!! | AAATCATACGCTTATTTTAA+TGG | - | chr6_2:21005389-21005408 | None:intergenic | 20.0% |
| !! | TTATCTATCTAAAAATGTGT+TGG | + | chr6_2:21005467-21005486 | Msa0912420:intron | 20.0% |
| !! | TAAATTACAGAGAATATAAG+AGG | - | chr6_2:21005901-21005920 | None:intergenic | 20.0% |
| !! | ATTTATTTATTGTTGGAATG+TGG | + | chr6_2:21006230-21006249 | Msa0912420:CDS | 20.0% |
| !!! | CATGAAATACAAAATTTTAG+TGG | + | chr6_2:21006279-21006298 | Msa0912420:CDS | 20.0% |
| ! | TAAAACGCGTATAATGAAAA+AGG | - | chr6_2:21004234-21004253 | None:intergenic | 25.0% |
| !!! | TTTCTTTAAAGTTGTGGATT+TGG | + | chr6_2:21004259-21004278 | Msa0912420:intron | 25.0% |
| !!! | TTCTTTAAAGTTGTGGATTT+GGG | + | chr6_2:21004260-21004279 | Msa0912420:intron | 25.0% |
| !!! | GATCTTGATATAGTCTTATT+TGG | + | chr6_2:21004304-21004323 | Msa0912420:intron | 25.0% |
| !! | ATATTTATCTGAAATGCAGA+TGG | + | chr6_2:21005143-21005162 | Msa0912420:intron | 25.0% |
| !! | ATAATGTGCTGTTAGTAATT+TGG | + | chr6_2:21005337-21005356 | Msa0912420:intron | 25.0% |
| !! | TTTTAACACTTAAACTGACA+GGG | + | chr6_2:21005501-21005520 | Msa0912420:intron | 25.0% |
| ! | ATTATTTGCATTGTAACTCT+AGG | + | chr6_2:21005606-21005625 | Msa0912420:intron | 25.0% |
| !!! | AGTGTTTTTGAGACATATTT+GGG | - | chr6_2:21005650-21005669 | None:intergenic | 25.0% |
| ! | ATGTGAAATTGTTTATGACT+AGG | + | chr6_2:21006044-21006063 | Msa0912420:intron | 25.0% |
| !!! | AACTTGTCTGTTTTTGAAAA+TGG | + | chr6_2:21006067-21006086 | Msa0912420:intron | 25.0% |
| !!! | TGTTTTTGAAAATGGTTTAG+TGG | + | chr6_2:21006075-21006094 | Msa0912420:intron | 25.0% |
| ! | GAATCAAATATTGTACATTG+AGG | - | chr6_2:21006148-21006167 | None:intergenic | 25.0% |
| ! | CAATGTACAATATTTGATTC+CGG | + | chr6_2:21006148-21006167 | Msa0912420:intron | 25.0% |
| !!! | TTACGTTTTGGTTTCAAAAT+TGG | - | chr6_2:21006258-21006277 | None:intergenic | 25.0% |
| !! | TGTATTTCATGTTTACGTTT+TGG | - | chr6_2:21006270-21006289 | None:intergenic | 25.0% |
| !!! | ATACAAAATTTTAGTGGTGA+AGG | + | chr6_2:21006285-21006304 | Msa0912420:CDS | 25.0% |
| ACAAAGATTTCGAATCTTCA+TGG | + | chr6_2:21004339-21004358 | Msa0912420:intron | 30.0% | |
| !!! | AATATGTCATTTTGGAACTC+TGG | + | chr6_2:21004709-21004728 | Msa0912420:intron | 30.0% |
| GTGACAAATTGTGTGTTAAA+GGG | + | chr6_2:21004939-21004958 | Msa0912420:intron | 30.0% | |
| ! | TTTTACATCAGTCTGACATT+CGG | + | chr6_2:21005025-21005044 | Msa0912420:CDS | 30.0% |
| CTGACATTCGGATTTATTAT+AGG | + | chr6_2:21005037-21005056 | Msa0912420:CDS | 30.0% | |
| !! | AGATAACTTTAGAACGTACA+TGG | - | chr6_2:21005453-21005472 | None:intergenic | 30.0% |
| !! | GTTTTAACACTTAAACTGAC+AGG | + | chr6_2:21005500-21005519 | Msa0912420:intron | 30.0% |
| !!! | GTGTTTTTGAGACATATTTG+GGG | - | chr6_2:21005649-21005668 | None:intergenic | 30.0% |
| !!! | GAGTGTTTTTGAGACATATT+TGG | - | chr6_2:21005651-21005670 | None:intergenic | 30.0% |
| ACATTCCAGTAATTGTACAA+CGG | - | chr6_2:21005715-21005734 | None:intergenic | 30.0% | |
| AATTACTGGAATGTGTAATC+TGG | + | chr6_2:21005721-21005740 | Msa0912420:intron | 30.0% | |
| ! | CTATTCTCTAGGAAATAGAA+TGG | + | chr6_2:21005785-21005804 | Msa0912420:intron | 30.0% |
| TAAAAAGACCACAATTCATG+GGG | - | chr6_2:21005993-21006012 | None:intergenic | 30.0% | |
| GTAAAAAGACCACAATTCAT+GGG | - | chr6_2:21005994-21006013 | None:intergenic | 30.0% | |
| TGTAAAAAGACCACAATTCA+TGG | - | chr6_2:21005995-21006014 | None:intergenic | 30.0% | |
| !! | AAAATTTTAGTGGTGAAGGA+GGG | + | chr6_2:21006289-21006308 | Msa0912420:CDS | 30.0% |
| TAATGGTTACCTTTCCATAG+GGG | - | chr6_2:21004056-21004075 | None:intergenic | 35.0% | |
| CTAATGGTTACCTTTCCATA+GGG | - | chr6_2:21004057-21004076 | None:intergenic | 35.0% | |
| ATATCAAGATCCCAATGTTG+TGG | - | chr6_2:21004295-21004314 | None:intergenic | 35.0% | |
| AACAAGAGAGACAATCATCA+AGG | - | chr6_2:21004612-21004631 | None:intergenic | 35.0% | |
| ATACTCTGTCAAAATTCCAG+TGG | + | chr6_2:21004791-21004810 | Msa0912420:intron | 35.0% | |
| !! | GTTTGTCTAGTGTCGATAAT+AGG | + | chr6_2:21004859-21004878 | Msa0912420:intron | 35.0% |
| CCAAAATTCATAATCGTGAC+CGG | - | chr6_2:21004916-21004935 | None:intergenic | 35.0% | |
| ! | CGGTCACGATTATGAATTTT+GGG | + | chr6_2:21004914-21004933 | Msa0912420:intron | 35.0% |
| CGTGACAAATTGTGTGTTAA+AGG | + | chr6_2:21004938-21004957 | Msa0912420:intron | 35.0% | |
| !!! | ACTTCTACTTTTGGTTCATG+TGG | - | chr6_2:21004971-21004990 | None:intergenic | 35.0% |
| ! | TCGTCTTGAACTTCTACTTT+TGG | - | chr6_2:21004980-21004999 | None:intergenic | 35.0% |
| ! | GAAGATTTGTTTCTCAATCG+TGG | + | chr6_2:21005001-21005020 | Msa0912420:CDS | 35.0% |
| TCGGATTTATTATAGGCTTC+TGG | + | chr6_2:21005044-21005063 | Msa0912420:CDS | 35.0% | |
| CGGATTTATTATAGGCTTCT+GGG | + | chr6_2:21005045-21005064 | Msa0912420:CDS | 35.0% | |
| GGATTTATTATAGGCTTCTG+GGG | + | chr6_2:21005046-21005065 | Msa0912420:CDS | 35.0% | |
| CAAGTTCATGAACAATGTAG+CGG | + | chr6_2:21005117-21005136 | Msa0912420:intron | 35.0% | |
| ! | ATGTGCTGTTAGTAATTTGG+AGG | + | chr6_2:21005340-21005359 | Msa0912420:intron | 35.0% |
| CTTCACTAAAGATTACTCGA+TGG | + | chr6_2:21005542-21005561 | Msa0912420:intron | 35.0% | |
| CATTCCAGTAATTGTACAAC+GGG | - | chr6_2:21005714-21005733 | None:intergenic | 35.0% | |
| !!! | AGTGTTTTGAGAGATGTTGA+AGG | + | chr6_2:21005752-21005771 | Msa0912420:intron | 35.0% |
| ! | TTCTCTAGGAAATAGAATGG+TGG | + | chr6_2:21005788-21005807 | Msa0912420:intron | 35.0% |
| ! | TCTCTAGGAAATAGAATGGT+GGG | + | chr6_2:21005789-21005808 | Msa0912420:intron | 35.0% |
| AAAAAGACCACAATTCATGG+GGG | - | chr6_2:21005992-21006011 | None:intergenic | 35.0% | |
| TAGTGGCATAGACTTATCAT+AGG | + | chr6_2:21006092-21006111 | Msa0912420:intron | 35.0% | |
| !!! | TTGTCTCCAGTTTTAAACCA+AGG | - | chr6_2:21006123-21006142 | None:intergenic | 35.0% |
| TACAATATTTGATTCCGGTC+AGG | + | chr6_2:21006153-21006172 | Msa0912420:intron | 35.0% | |
| ! | CTTTTGTGTCTCCAATCATA+GGG | + | chr6_2:21006182-21006201 | Msa0912420:intron | 35.0% |
| AAAGGTAAATGCCCTATGAT+TGG | - | chr6_2:21006196-21006215 | None:intergenic | 35.0% | |
| !! | CAAAATTTTAGTGGTGAAGG+AGG | + | chr6_2:21006288-21006307 | Msa0912420:CDS | 35.0% |
| GATGGAGAATTTATTGGAGA+TGG | - | chr6_2:21006327-21006346 | None:intergenic | 35.0% | |
| AGTGGAGATGGAGAATTTAT+TGG | - | chr6_2:21006333-21006352 | None:intergenic | 35.0% | |
| GAAAAGAGCTATCCGTTAGA+TGG | + | chr6_2:21003870-21003889 | Msa0912420:CDS | 40.0% | |
| GAAAAGAGCTATCCGTTAGA+TGG | + | chr6_2:21003870-21003889 | Msa0912420:CDS | 40.0% | |
| CCTAATGGTTACCTTTCCAT+AGG | - | chr6_2:21004058-21004077 | None:intergenic | 40.0% | |
| CCTATGGAAAGGTAACCATT+AGG | + | chr6_2:21004055-21004074 | Msa0912420:intron | 40.0% | |
| ATGGAAAGGTAACCATTAGG+AGG | + | chr6_2:21004058-21004077 | Msa0912420:intron | 40.0% | |
| ACTAGATGGGAAACACACAT+GGG | - | chr6_2:21004452-21004471 | None:intergenic | 40.0% | |
| CAGCTCTCTACTTAGCTAAT+TGG | - | chr6_2:21004544-21004563 | None:intergenic | 40.0% | |
| ! | AAGTTCATCTGTGTCACTCT+TGG | + | chr6_2:21004576-21004595 | Msa0912420:intron | 40.0% |
| ! | TCAGAGTATCTGCAGCTATT+TGG | + | chr6_2:21004647-21004666 | Msa0912420:intron | 40.0% |
| ! | TCTGCAGCTATTTGGAGTTT+AGG | + | chr6_2:21004655-21004674 | Msa0912420:intron | 40.0% |
| GAGAATACAGGTTCATAAGC+AGG | + | chr6_2:21004734-21004753 | Msa0912420:intron | 40.0% | |
| CGAACTAGAACATTCTAGTC+CGG | - | chr6_2:21004889-21004908 | None:intergenic | 40.0% | |
| ! | CCGGTCACGATTATGAATTT+TGG | + | chr6_2:21004913-21004932 | Msa0912420:intron | 40.0% |
| !!! | TCTACTTTTGGTTCATGTGG+TGG | - | chr6_2:21004968-21004987 | None:intergenic | 40.0% |
| CAATCCTAATCAAGCGTTCT+TGG | + | chr6_2:21005080-21005099 | Msa0912420:CDS | 40.0% | |
| AAGATTACTCGATGGTGCAT+TGG | + | chr6_2:21005550-21005569 | Msa0912420:intron | 40.0% | |
| !! | ATTGGTGGTGGATCAGATTA+AGG | + | chr6_2:21005568-21005587 | Msa0912420:intron | 40.0% |
| ACATCCCGTTGTACAATTAC+TGG | + | chr6_2:21005707-21005726 | Msa0912420:intron | 40.0% | |
| TTTGAGAGATGTTGAAGGTG+AGG | + | chr6_2:21005757-21005776 | Msa0912420:intron | 40.0% | |
| GTGAGGAGAAACTATTCTCT+AGG | + | chr6_2:21005774-21005793 | Msa0912420:intron | 40.0% | |
| AATTCATGGGGGAAATGCAT+GGG | - | chr6_2:21005981-21006000 | None:intergenic | 40.0% | |
| !! | ACTTATCATAGGACTAGCCT+TGG | + | chr6_2:21006103-21006122 | Msa0912420:intron | 40.0% |
| !! | GACTAGCCTTGGTTTAAAAC+TGG | + | chr6_2:21006114-21006133 | Msa0912420:intron | 40.0% |
| CCTATGATTGGAGACACAAA+AGG | - | chr6_2:21006184-21006203 | None:intergenic | 40.0% | |
| ! | CCTTTTGTGTCTCCAATCAT+AGG | + | chr6_2:21006181-21006200 | Msa0912420:intron | 40.0% |
| CGTAAACGAATCATCACTGT+CGG | - | chr6_2:21006417-21006436 | None:intergenic | 40.0% | |
| CGACAGTGATGATTCGTTTA+CGG | + | chr6_2:21006415-21006434 | Msa0912420:CDS | 40.0% | |
| TAATGGTGGCCTTTCCATAG+GGG | - | chr6_2:21003901-21003920 | None:intergenic | 45.0% | |
| CTAATGGTGGCCTTTCCATA+GGG | - | chr6_2:21003902-21003921 | None:intergenic | 45.0% | |
| AAGGTAACCATTAGGAGGAG+AGG | + | chr6_2:21004063-21004082 | Msa0912420:intron | 45.0% | |
| AGGTAACCATTAGGAGGAGA+GGG | + | chr6_2:21004064-21004083 | Msa0912420:intron | 45.0% | |
| GTTCGCTTCTCCACAACATT+GGG | + | chr6_2:21004282-21004301 | Msa0912420:intron | 45.0% | |
| CACTAGATGGGAAACACACA+TGG | - | chr6_2:21004453-21004472 | None:intergenic | 45.0% | |
| CATGTGTGTTTCCCATCTAG+TGG | + | chr6_2:21004451-21004470 | Msa0912420:intron | 45.0% | |
| AACAACCACCACCACTAGAT+GGG | - | chr6_2:21004465-21004484 | None:intergenic | 45.0% | |
| ! | TTCATCTGTGTCACTCTTGG+TGG | + | chr6_2:21004579-21004598 | Msa0912420:intron | 45.0% |
| GGAACTCTGGATGAGAATAC+AGG | + | chr6_2:21004722-21004741 | Msa0912420:intron | 45.0% | |
| !! | AGTGTCGATAATAGGCTTGC+CGG | + | chr6_2:21004867-21004886 | Msa0912420:intron | 45.0% |
| GTCTCCAAGAACGCTTGATT+AGG | - | chr6_2:21005087-21005106 | None:intergenic | 45.0% | |
| ATGGTAGCTCAGAGACAAAC+TGG | + | chr6_2:21005162-21005181 | Msa0912420:intron | 45.0% | |
| ATTACTCGATGGTGCATTGG+TGG | + | chr6_2:21005553-21005572 | Msa0912420:intron | 45.0% | |
| TGGATCAGATTAAGGAGCTC+AGG | + | chr6_2:21005576-21005595 | Msa0912420:intron | 45.0% | |
| ! | TTTGAGACATATTTGGGGCG+AGG | - | chr6_2:21005644-21005663 | None:intergenic | 45.0% |
| ! | CGGGATGTCTTTTGCACATA+TGG | - | chr6_2:21005695-21005714 | None:intergenic | 45.0% |
| CAATTCATGGGGGAAATGCA+TGG | - | chr6_2:21005982-21006001 | None:intergenic | 45.0% | |
| TGCATTTCCCCCATGAATTG+TGG | + | chr6_2:21005982-21006001 | Msa0912420:intron | 45.0% | |
| ! | CACAAAAGGTTAGTCCTGAC+CGG | - | chr6_2:21006170-21006189 | None:intergenic | 45.0% |
| GATTCGTTTACGGCAAAGTC+AGG | + | chr6_2:21006425-21006444 | Msa0912420:CDS | 45.0% | |
| CCTAATGGTGGCCTTTCCAT+AGG | - | chr6_2:21003903-21003922 | None:intergenic | 50.0% | |
| CCTATGGAAAGGCCACCATT+AGG | + | chr6_2:21003900-21003919 | Msa0912420:CDS | 50.0% | |
| ATGGAAAGGCCACCATTAGG+AGG | + | chr6_2:21003903-21003922 | Msa0912420:CDS | 50.0% | |
| TGATAGCCCTCTCCTCCTAA+TGG | - | chr6_2:21003918-21003937 | None:intergenic | 50.0% | |
| TGGTTACCTTTCCATAGGGG+CGG | - | chr6_2:21004053-21004072 | None:intergenic | 50.0% | |
| TGATAGCCCTCTCCTCCTAA+TGG | - | chr6_2:21003918-21003937 | None:intergenic | 50.0% | |
| GGTTCGCTTCTCCACAACAT+TGG | + | chr6_2:21004281-21004300 | Msa0912420:intron | 50.0% | |
| GTGTGTTTCCCATCTAGTGG+TGG | + | chr6_2:21004454-21004473 | Msa0912420:intron | 50.0% | |
| TGTTTCCCATCTAGTGGTGG+TGG | + | chr6_2:21004457-21004476 | Msa0912420:intron | 50.0% | |
| CAACAACCACCACCACTAGA+TGG | - | chr6_2:21004466-21004485 | None:intergenic | 50.0% | |
| ! | TCTGTGTCACTCTTGGTGGT+AGG | + | chr6_2:21004583-21004602 | Msa0912420:intron | 50.0% |
| !! | GAATGTTCTAGTTCGTGCGC+CGG | + | chr6_2:21004894-21004913 | Msa0912420:intron | 50.0% |
| !! | ATAGGCTTCTGGGGAGTGTT+TGG | + | chr6_2:21005055-21005074 | Msa0912420:CDS | 50.0% |
| GGGGGAAATGCATGGGAAAA+TGG | - | chr6_2:21005974-21005993 | None:intergenic | 50.0% | |
| ! | AACTGCGACGATGACGGTTA+GGG | - | chr6_2:21006358-21006377 | None:intergenic | 50.0% |
| AGTACCAACTGCGACGATGA+CGG | - | chr6_2:21006364-21006383 | None:intergenic | 50.0% | |
| CGAATCATCACTGTCGGAGA+GGG | - | chr6_2:21006411-21006430 | None:intergenic | 50.0% | |
| ACGAATCATCACTGTCGGAG+AGG | - | chr6_2:21006412-21006431 | None:intergenic | 50.0% | |
| ATAGGGGCGGCTCCATCTAA+CGG | - | chr6_2:21003885-21003904 | None:intergenic | 55.0% | |
| AAGGCCACCATTAGGAGGAG+AGG | + | chr6_2:21003908-21003927 | Msa0912420:CDS | 55.0% | |
| AGGCCACCATTAGGAGGAGA+GGG | + | chr6_2:21003909-21003928 | Msa0912420:CDS | 55.0% | |
| TAGCCCTCTCCTCCTAATGG+TGG | - | chr6_2:21003915-21003934 | None:intergenic | 55.0% | |
| GGAGAGGGCTATCAACGAGA+TGG | + | chr6_2:21003924-21003943 | Msa0912420:CDS | 55.0% | |
| ATAGGGGCGGCTCCATCTAA+CGG | - | chr6_2:21003885-21003904 | None:intergenic | 55.0% | |
| ! | ACTCGATGGTGCATTGGTGG+TGG | + | chr6_2:21005556-21005575 | Msa0912420:intron | 55.0% |
| ACGGTTAGGGGAAGTGGAGA+TGG | - | chr6_2:21006345-21006364 | None:intergenic | 55.0% | |
| ! | ACGATGACGGTTAGGGGAAG+TGG | - | chr6_2:21006351-21006370 | None:intergenic | 55.0% |
| ! | ACTGCGACGATGACGGTTAG+GGG | - | chr6_2:21006357-21006376 | None:intergenic | 55.0% |
| ! | CAACTGCGACGATGACGGTT+AGG | - | chr6_2:21006359-21006378 | None:intergenic | 55.0% |
| CTAACCGTCATCGTCGCAGT+TGG | + | chr6_2:21006357-21006376 | Msa0912420:CDS | 55.0% | |
| TGCGGAGGTGGTGCATTTAG+CGG | - | chr6_2:21006387-21006406 | None:intergenic | 55.0% | |
| ATCACTGTCGGAGAGGGATG+CGG | - | chr6_2:21006405-21006424 | None:intergenic | 55.0% | |
| GTTAGATGGAGCCGCCCCTA+TGG | + | chr6_2:21003884-21003903 | Msa0912420:CDS | 60.0% | |
| ATGGAGCCGCCCCTATGGAA+AGG | + | chr6_2:21003889-21003908 | Msa0912420:CDS | 60.0% | |
| TGGTGGCCTTTCCATAGGGG+CGG | - | chr6_2:21003898-21003917 | None:intergenic | 60.0% | |
| GTTAGATGGAGCCGCCCCTA+TGG | + | chr6_2:21003884-21003903 | Msa0912420:CDS | 60.0% | |
| ATGGAGCCGCCCCTATGGAA+AGG | + | chr6_2:21003889-21003908 | Msa0912420:CDS | 60.0% | |
| ACTGTCGGAGAGGGATGCGG+AGG | - | chr6_2:21006402-21006421 | None:intergenic | 65.0% | |
| GTCGGAGAGGGATGCGGAGG+TGG | - | chr6_2:21006399-21006418 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 21003843 | 21006464 | 21003843 | ID=Msa0912420;Name=Msa0912420 |
| chr6_2 | mRNA | 21003843 | 21006464 | 21003843 | ID=Msa0912420-mRNA-1;Parent=Msa0912420;Name=Msa0912420-mRNA-1;_AED=0.83;_eAED=0.83;_QI=0|0|0|0.33|1|1|3|0|176 |
| chr6_2 | exon | 21003843 | 21003951 | 21003843 | ID=Msa0912420-mRNA-1:exon:4264;Parent=Msa0912420-mRNA-1 |
| chr6_2 | exon | 21004960 | 21005119 | 21004960 | ID=Msa0912420-mRNA-1:exon:4265;Parent=Msa0912420-mRNA-1 |
| chr6_2 | exon | 21006203 | 21006464 | 21006203 | ID=Msa0912420-mRNA-1:exon:4266;Parent=Msa0912420-mRNA-1 |
| chr6_2 | CDS | 21003843 | 21003951 | 21003843 | ID=Msa0912420-mRNA-1:cds;Parent=Msa0912420-mRNA-1 |
| chr6_2 | CDS | 21004960 | 21005119 | 21004960 | ID=Msa0912420-mRNA-1:cds;Parent=Msa0912420-mRNA-1 |
| chr6_2 | CDS | 21006203 | 21006464 | 21006203 | ID=Msa0912420-mRNA-1:cds;Parent=Msa0912420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
