AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0913110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0913110 MtrunA17_Chr8g0387591 91.667 48 2 1 31 76 816 863 1.84e-22 89.4
Msa0913110 MtrunA17_Chr3g0131401 81.250 48 7 1 31 76 795 842 7.17e-19 79.0
Msa0913110 MtrunA17_Chr1g0192121 81.250 48 7 1 31 76 757 804 8.12e-19 79.0
Msa0913110 MtrunA17_Chr2g0301511 75.000 48 10 1 31 76 803 850 3.83e-18 77.0
Msa0913110 MtrunA17_Chr7g0272591 65.455 55 17 1 24 76 760 814 9.94e-18 75.9
Msa0913110 MtrunA17_Chr7g0238371 75.000 48 10 1 31 76 723 770 3.39e-17 74.3
Msa0913110 MtrunA17_Chr8g0385411 72.917 48 11 1 31 76 770 817 4.91e-17 73.6
Msa0913110 MtrunA17_Chr3g0131361 66.667 45 13 1 34 76 785 829 4.44e-13 62.4
Msa0913110 MtrunA17_Chr3g0131381 56.140 57 23 1 22 76 780 836 7.18e-12 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0913110 AT1G64060.1 91.667 48 2 1 31 76 816 863 2.50e-22 89.4
Msa0913110 AT5G47910.1 64.286 56 18 1 22 75 784 839 3.91e-18 77.4
Msa0913110 AT5G07390.2 77.083 48 9 1 31 76 742 789 2.21e-17 75.1
Msa0913110 AT5G07390.1 77.083 48 9 1 31 76 774 821 2.71e-17 74.7
Msa0913110 AT5G51060.1 76.596 47 9 1 31 75 777 823 9.92e-17 73.2
Msa0913110 AT4G11230.1 70.833 48 12 1 31 76 813 860 3.26e-16 71.6
Msa0913110 AT1G09090.2 72.917 48 11 1 31 76 715 762 9.98e-16 70.5
Msa0913110 AT5G60010.1 70.833 48 12 1 31 76 758 805 1.02e-15 70.5
Msa0913110 AT3G45810.1 68.750 48 13 1 31 76 784 831 5.00e-15 68.6
Msa0913110 AT1G19230.2 65.957 47 14 1 31 75 824 870 1.64e-14 67.0
Msa0913110 AT1G19230.1 65.957 47 14 1 31 75 798 844 1.90e-14 66.6
Msa0913110 AT4G25090.2 63.830 47 15 1 31 75 709 755 3.98e-14 65.9
Msa0913110 AT4G25090.1 63.830 47 15 1 31 75 721 767 4.06e-14 65.9

Find 62 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGAGTTGATATTGTTTC+TGG 0.098642 6_2:+23198503 Msa0913110:three_prime_UTR
AGGAGCATTTCTAACTAATT+TGG 0.161404 6_2:+23198932 Msa0913110:three_prime_UTR
ATTGAAGACATTGACTTAAT+TGG 0.204361 6_2:+23199151 Msa0913110:three_prime_UTR
CCTTATTGAATTTGATAAAA+AGG 0.205933 6_2:-23198072 None:intergenic
TCAATAAGGGTTCTATTATA+AGG 0.235117 6_2:+23198086 Msa0913110:CDS
TGCTAGGCCTAATTGGAAAA+AGG 0.254620 6_2:+23198667 Msa0913110:three_prime_UTR
ATAAATTAAAGAAAGATAAA+AGG 0.300162 6_2:+23199232 Msa0913110:three_prime_UTR
TAGAAACATAGGGCTGAAAA+TGG 0.323810 6_2:+23199334 Msa0913110:three_prime_UTR
AGGTAAGGGGACAAGGGATT+TGG 0.329052 6_2:+23199255 Msa0913110:three_prime_UTR
GCCTAGTTTATTAAGTTCTT+CGG 0.389157 6_2:-23198866 None:intergenic
CCACATCAATTTGCTATAAC+GGG 0.396873 6_2:-23198967 None:intergenic
GCCACATCAATTTGCTATAA+CGG 0.402560 6_2:-23198968 None:intergenic
AAATTAAACAAATGAGTTGA+TGG 0.402688 6_2:+23199635 Msa0913110:three_prime_UTR
AAGAAAGATAAAAGGAGGTA+AGG 0.405131 6_2:+23199240 Msa0913110:three_prime_UTR
TAAAAGGAGGTAAGGGGACA+AGG 0.423961 6_2:+23199248 Msa0913110:three_prime_UTR
TTGAACAATATCATATAATC+AGG 0.425792 6_2:-23198990 None:intergenic
AGAAAGATAAAAGGAGGTAA+GGG 0.425927 6_2:+23199241 Msa0913110:three_prime_UTR
GTGCTTGAACTATGGTGAAT+TGG 0.445773 6_2:-23198466 None:intergenic
AGGCTTCGAGTTCAATGAAA+AGG 0.447822 6_2:+23198885 Msa0913110:three_prime_UTR
CACGCTGGAATCGTCATGTA+AGG 0.450062 6_2:+23199362 Msa0913110:three_prime_UTR
TTGATATTGTTTCTGGAACC+AGG 0.454779 6_2:+23198510 Msa0913110:three_prime_UTR
ATGTGTTCCAAGCACTATAG+TGG 0.458446 6_2:+23198701 Msa0913110:three_prime_UTR
AAGCACTATAGTGGACGAAT+AGG 0.465955 6_2:+23198710 Msa0913110:three_prime_UTR
AGCTCTAGTCGTAACCTTGA+TGG 0.474185 6_2:-23199526 None:intergenic
GTTATGATACAAAAGGTAAA+GGG 0.483001 6_2:-23199551 None:intergenic
TGTTATGATACAAAAGGTAA+AGG 0.484107 6_2:-23199552 None:intergenic
CATATAGACCTTTCCTCTGA+GGG 0.489228 6_2:-23199469 None:intergenic
CTGAAAATGGTGACTCACGC+TGG 0.489758 6_2:+23199347 Msa0913110:three_prime_UTR
ATGGTTAAGTGCTTGAACTA+TGG 0.496161 6_2:-23198474 None:intergenic
AAAAGGAGGTAAGGGGACAA+GGG 0.508171 6_2:+23199249 Msa0913110:three_prime_UTR
GCCGAAGAACTTAATAAACT+AGG 0.510408 6_2:+23198865 Msa0913110:three_prime_UTR
AGTAACTGAGCTTGATCAAA+GGG 0.513905 6_2:+23198246 Msa0913110:CDS
TATTCGTCCACTATAGTGCT+TGG 0.520509 6_2:-23198708 None:intergenic
CTATGGTGAATTGGTGATAA+GGG 0.523870 6_2:-23198457 None:intergenic
AATGTTTGTAACGTACTGTA+TGG 0.525630 6_2:-23199131 None:intergenic
GGCTTCGAGTTCAATGAAAA+GGG 0.539977 6_2:+23198886 Msa0913110:three_prime_UTR
AGGAATTTCCCTCAGAGGAA+AGG 0.541746 6_2:+23199461 Msa0913110:three_prime_UTR
AGATCTGCAGTGAATTGAAA+GGG 0.546340 6_2:+23199197 Msa0913110:three_prime_UTR
ACTATGGTGAATTGGTGATA+AGG 0.549651 6_2:-23198458 None:intergenic
GAAAGGTCTATATGTAAATG+AGG 0.550021 6_2:+23199478 Msa0913110:three_prime_UTR
TAGATCTGCAGTGAATTGAA+AGG 0.554148 6_2:+23199196 Msa0913110:three_prime_UTR
TGATATTGTTTCTGGAACCA+GGG 0.555585 6_2:+23198511 Msa0913110:three_prime_UTR
AAGTAACTGAGCTTGATCAA+AGG 0.558937 6_2:+23198245 Msa0913110:CDS
TATCAGACAGCAAACATGCT+TGG 0.560324 6_2:+23199058 Msa0913110:three_prime_UTR
GAAAGATAAAAGGAGGTAAG+GGG 0.564736 6_2:+23199242 Msa0913110:three_prime_UTR
TTCGGTTGAGAGACGGAGAG+AGG 0.567485 6_2:-23199410 None:intergenic
TATAGGGTTACAAGAGAGCA+AGG 0.574650 6_2:+23198190 Msa0913110:intron
AACTACTTAACTAGCGAGGA+AGG 0.576255 6_2:+23198420 Msa0913110:CDS
ATAATGTGTTATGATACAAA+AGG 0.580464 6_2:-23199558 None:intergenic
ACAATGAAGATCTCACAAGT+TGG 0.580783 6_2:+23198026 Msa0913110:CDS
ATCAGGGTTCGGTTGAGAGA+CGG 0.582724 6_2:-23199417 None:intergenic
TACTGAGGAATTTCCCTCAG+AGG 0.583254 6_2:+23199456 Msa0913110:three_prime_UTR
ACATATAGACCTTTCCTCTG+AGG 0.605452 6_2:-23199470 None:intergenic
AATTGAAAGGGACAGTTCTG+AGG 0.612563 6_2:+23199209 Msa0913110:three_prime_UTR
AATTAAAGAAAGATAAAAGG+AGG 0.614874 6_2:+23199235 Msa0913110:three_prime_UTR
TCGGTTGAGAGACGGAGAGA+GGG 0.618844 6_2:-23199409 None:intergenic
ACGCTGGAATCGTCATGTAA+GGG 0.629001 6_2:+23199363 Msa0913110:three_prime_UTR
TAGCTACAAAGAAGATGTAA+CGG 0.635905 6_2:+23199097 Msa0913110:three_prime_UTR
TTAGTTAGAAATGCTCCTTG+TGG 0.636876 6_2:-23198927 None:intergenic
CCCGTTATAGCAAATTGATG+TGG 0.642807 6_2:+23198967 Msa0913110:three_prime_UTR
AACAAAATTTGAGTTCCACA+AGG 0.668640 6_2:+23198912 Msa0913110:three_prime_UTR
GCACAACTACTTAACTAGCG+AGG 0.693637 6_2:+23198416 Msa0913110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATTAAAGAAAGATAAA+AGG + chr6_2:23199232-23199251 Msa0913110:three_prime_UTR 10.0%
!! ATAAATTAAAGAAAGATAAA+AGG + chr6_2:23199232-23199251 Msa0913110:three_prime_UTR 10.0%
!!! CTTTTTATCAAATTCAATAA+GGG + chr6_2:23198073-23198092 Msa0913110:CDS 15.0%
!!! CTTTTTATCAAATTCAATAA+GGG + chr6_2:23198073-23198092 Msa0913110:CDS 15.0%
!! CCTTATTGAATTTGATAAAA+AGG - chr6_2:23198075-23198094 None:intergenic 20.0%
!!! CCTTTTTATCAAATTCAATA+AGG + chr6_2:23198072-23198091 Msa0913110:CDS 20.0%
!! TAATATTGATCGTCAAATTA+TGG + chr6_2:23198372-23198391 Msa0913110:intron 20.0%
!!! CTATTTTAATTTACTCAATC+CGG - chr6_2:23198608-23198627 None:intergenic 20.0%
!!! CTTTTGAATTTCTAATTATC+AGG + chr6_2:23198631-23198650 Msa0913110:intron 20.0%
!! TTGAACAATATCATATAATC+AGG - chr6_2:23198993-23199012 None:intergenic 20.0%
!! TTTCACATTCTATACAAAAA+AGG - chr6_2:23199026-23199045 None:intergenic 20.0%
!! AATTAAAGAAAGATAAAAGG+AGG + chr6_2:23199235-23199254 Msa0913110:three_prime_UTR 20.0%
!! AATTTACTCAAAGAAAAATG+AGG - chr6_2:23199305-23199324 None:intergenic 20.0%
!!! TTCGATAATTTTAGAAACAT+AGG + chr6_2:23199323-23199342 Msa0913110:three_prime_UTR 20.0%
!!! TCGATAATTTTAGAAACATA+GGG + chr6_2:23199324-23199343 Msa0913110:three_prime_UTR 20.0%
!! ATAATGTGTTATGATACAAA+AGG - chr6_2:23199561-23199580 None:intergenic 20.0%
!!! TTTTGTATCATAACACATTA+TGG + chr6_2:23199560-23199579 Msa0913110:three_prime_UTR 20.0%
!!! AAATTAAACAAATGAGTTGA+TGG + chr6_2:23199635-23199654 Msa0913110:three_prime_UTR 20.0%
!! CCTTATTGAATTTGATAAAA+AGG - chr6_2:23198075-23198094 None:intergenic 20.0%
!!! CCTTTTTATCAAATTCAATA+AGG + chr6_2:23198072-23198091 Msa0913110:CDS 20.0%
!! TAATATTGATCGTCAAATTA+TGG + chr6_2:23198372-23198391 Msa0913110:intron 20.0%
!!! CTATTTTAATTTACTCAATC+CGG - chr6_2:23198608-23198627 None:intergenic 20.0%
!!! CTTTTGAATTTCTAATTATC+AGG + chr6_2:23198631-23198650 Msa0913110:intron 20.0%
!! TTGAACAATATCATATAATC+AGG - chr6_2:23198993-23199012 None:intergenic 20.0%
!! TTTCACATTCTATACAAAAA+AGG - chr6_2:23199026-23199045 None:intergenic 20.0%
!! AATTAAAGAAAGATAAAAGG+AGG + chr6_2:23199235-23199254 Msa0913110:three_prime_UTR 20.0%
!! AATTTACTCAAAGAAAAATG+AGG - chr6_2:23199305-23199324 None:intergenic 20.0%
!!! TTCGATAATTTTAGAAACAT+AGG + chr6_2:23199323-23199342 Msa0913110:three_prime_UTR 20.0%
!!! TCGATAATTTTAGAAACATA+GGG + chr6_2:23199324-23199343 Msa0913110:three_prime_UTR 20.0%
!! ATAATGTGTTATGATACAAA+AGG - chr6_2:23199561-23199580 None:intergenic 20.0%
!!! TTTTGTATCATAACACATTA+TGG + chr6_2:23199560-23199579 Msa0913110:three_prime_UTR 20.0%
!!! AAATTAAACAAATGAGTTGA+TGG + chr6_2:23199635-23199654 Msa0913110:three_prime_UTR 20.0%
! TCAATAAGGGTTCTATTATA+AGG + chr6_2:23198086-23198105 Msa0913110:CDS 25.0%
! TTTAGTTGTGTGTGATTTAT+AGG + chr6_2:23198173-23198192 Msa0913110:intron 25.0%
! TTAGTTGTGTGTGATTTATA+GGG + chr6_2:23198174-23198193 Msa0913110:intron 25.0%
!! AACAATATCAACTCCATTTT+TGG - chr6_2:23198501-23198520 None:intergenic 25.0%
!!! TAGAAATTAAAAGAGCATCA+AGG - chr6_2:23198582-23198601 None:intergenic 25.0%
!!! GTATCAGGTGTATTTTATTT+TGG + chr6_2:23198829-23198848 Msa0913110:intron 25.0%
!!! ATTGAAGACATTGACTTAAT+TGG + chr6_2:23199151-23199170 Msa0913110:three_prime_UTR 25.0%
!! TTTTCTTTTTTCTTCCATCA+AGG + chr6_2:23199512-23199531 Msa0913110:three_prime_UTR 25.0%
! GTTATGATACAAAAGGTAAA+GGG - chr6_2:23199554-23199573 None:intergenic 25.0%
! TGTTATGATACAAAAGGTAA+AGG - chr6_2:23199555-23199574 None:intergenic 25.0%
! TCAATAAGGGTTCTATTATA+AGG + chr6_2:23198086-23198105 Msa0913110:CDS 25.0%
! TTTAGTTGTGTGTGATTTAT+AGG + chr6_2:23198173-23198192 Msa0913110:intron 25.0%
! TTAGTTGTGTGTGATTTATA+GGG + chr6_2:23198174-23198193 Msa0913110:intron 25.0%
!! AACAATATCAACTCCATTTT+TGG - chr6_2:23198501-23198520 None:intergenic 25.0%
!!! TAGAAATTAAAAGAGCATCA+AGG - chr6_2:23198582-23198601 None:intergenic 25.0%
!!! GTATCAGGTGTATTTTATTT+TGG + chr6_2:23198829-23198848 Msa0913110:intron 25.0%
!!! ATTGAAGACATTGACTTAAT+TGG + chr6_2:23199151-23199170 Msa0913110:three_prime_UTR 25.0%
!! TTTTCTTTTTTCTTCCATCA+AGG + chr6_2:23199512-23199531 Msa0913110:three_prime_UTR 25.0%
! GTTATGATACAAAAGGTAAA+GGG - chr6_2:23199554-23199573 None:intergenic 25.0%
! TGTTATGATACAAAAGGTAA+AGG - chr6_2:23199555-23199574 None:intergenic 25.0%
AAGTAATCCTTATTGCAGAA+GGG - chr6_2:23198343-23198362 None:intergenic 30.0%
!! CAATAAGGATTACTTGCTAT+TGG + chr6_2:23198348-23198367 Msa0913110:intron 30.0%
!! AATGGAGTTGATATTGTTTC+TGG + chr6_2:23198503-23198522 Msa0913110:three_prime_UTR 30.0%
!!! GCTCTTTTAATTTCTAAGTC+CGG + chr6_2:23198586-23198605 Msa0913110:intron 30.0%
! GAGAAAACCTTTTTCCAATT+AGG - chr6_2:23198677-23198696 None:intergenic 30.0%
AAGTACCAACATATACTTGA+TGG - chr6_2:23198743-23198762 None:intergenic 30.0%
ATATGTTGGTACTTCATACA+TGG + chr6_2:23198749-23198768 Msa0913110:intron 30.0%
GCCTAGTTTATTAAGTTCTT+CGG - chr6_2:23198869-23198888 None:intergenic 30.0%
! TTGTGGAACTCAAATTTTGT+TGG - chr6_2:23198913-23198932 None:intergenic 30.0%
! AACAAAATTTGAGTTCCACA+AGG + chr6_2:23198912-23198931 Msa0913110:three_prime_UTR 30.0%
!! AGGAGCATTTCTAACTAATT+TGG + chr6_2:23198932-23198951 Msa0913110:three_prime_UTR 30.0%
TAGCTACAAAGAAGATGTAA+CGG + chr6_2:23199097-23199116 Msa0913110:three_prime_UTR 30.0%
AATGTTTGTAACGTACTGTA+TGG - chr6_2:23199134-23199153 None:intergenic 30.0%
AAGAAAGATAAAAGGAGGTA+AGG + chr6_2:23199240-23199259 Msa0913110:three_prime_UTR 30.0%
AGAAAGATAAAAGGAGGTAA+GGG + chr6_2:23199241-23199260 Msa0913110:three_prime_UTR 30.0%
GAAAAGCCAAACAAAAATCA+GGG - chr6_2:23199436-23199455 None:intergenic 30.0%
AGAAAAGCCAAACAAAAATC+AGG - chr6_2:23199437-23199456 None:intergenic 30.0%
GAAAGGTCTATATGTAAATG+AGG + chr6_2:23199478-23199497 Msa0913110:three_prime_UTR 30.0%
AAGTAATCCTTATTGCAGAA+GGG - chr6_2:23198343-23198362 None:intergenic 30.0%
!! CAATAAGGATTACTTGCTAT+TGG + chr6_2:23198348-23198367 Msa0913110:intron 30.0%
!! AATGGAGTTGATATTGTTTC+TGG + chr6_2:23198503-23198522 Msa0913110:three_prime_UTR 30.0%
!!! GCTCTTTTAATTTCTAAGTC+CGG + chr6_2:23198586-23198605 Msa0913110:intron 30.0%
! GAGAAAACCTTTTTCCAATT+AGG - chr6_2:23198677-23198696 None:intergenic 30.0%
AAGTACCAACATATACTTGA+TGG - chr6_2:23198743-23198762 None:intergenic 30.0%
ATATGTTGGTACTTCATACA+TGG + chr6_2:23198749-23198768 Msa0913110:intron 30.0%
GCCTAGTTTATTAAGTTCTT+CGG - chr6_2:23198869-23198888 None:intergenic 30.0%
! TTGTGGAACTCAAATTTTGT+TGG - chr6_2:23198913-23198932 None:intergenic 30.0%
! AACAAAATTTGAGTTCCACA+AGG + chr6_2:23198912-23198931 Msa0913110:three_prime_UTR 30.0%
!! AGGAGCATTTCTAACTAATT+TGG + chr6_2:23198932-23198951 Msa0913110:three_prime_UTR 30.0%
TAGCTACAAAGAAGATGTAA+CGG + chr6_2:23199097-23199116 Msa0913110:three_prime_UTR 30.0%
AATGTTTGTAACGTACTGTA+TGG - chr6_2:23199134-23199153 None:intergenic 30.0%
AAGAAAGATAAAAGGAGGTA+AGG + chr6_2:23199240-23199259 Msa0913110:three_prime_UTR 30.0%
AGAAAGATAAAAGGAGGTAA+GGG + chr6_2:23199241-23199260 Msa0913110:three_prime_UTR 30.0%
GAAAAGCCAAACAAAAATCA+GGG - chr6_2:23199436-23199455 None:intergenic 30.0%
AGAAAAGCCAAACAAAAATC+AGG - chr6_2:23199437-23199456 None:intergenic 30.0%
GAAAGGTCTATATGTAAATG+AGG + chr6_2:23199478-23199497 Msa0913110:three_prime_UTR 30.0%
ACAATGAAGATCTCACAAGT+TGG + chr6_2:23198026-23198045 Msa0913110:CDS 35.0%
AAGTAACTGAGCTTGATCAA+AGG + chr6_2:23198245-23198264 Msa0913110:CDS 35.0%
AGTAACTGAGCTTGATCAAA+GGG + chr6_2:23198246-23198265 Msa0913110:CDS 35.0%
CAAGTAATCCTTATTGCAGA+AGG - chr6_2:23198344-23198363 None:intergenic 35.0%
ATCGTCAAATTATGGACTTC+AGG + chr6_2:23198380-23198399 Msa0913110:intron 35.0%
TCGTCAAATTATGGACTTCA+GGG + chr6_2:23198381-23198400 Msa0913110:intron 35.0%
! CTATGGTGAATTGGTGATAA+GGG - chr6_2:23198460-23198479 None:intergenic 35.0%
! ACTATGGTGAATTGGTGATA+AGG - chr6_2:23198461-23198480 None:intergenic 35.0%
ATGGTTAAGTGCTTGAACTA+TGG - chr6_2:23198477-23198496 None:intergenic 35.0%
!!! TATCAACTCCATTTTTGGCA+TGG - chr6_2:23198496-23198515 None:intergenic 35.0%
!! TTGATATTGTTTCTGGAACC+AGG + chr6_2:23198510-23198529 Msa0913110:three_prime_UTR 35.0%
!! TGATATTGTTTCTGGAACCA+GGG + chr6_2:23198511-23198530 Msa0913110:three_prime_UTR 35.0%
CAAAAATAGAATGCTTACCC+TGG - chr6_2:23198531-23198550 None:intergenic 35.0%
AGTCTCCATCAAGTATATGT+TGG + chr6_2:23198735-23198754 Msa0913110:intron 35.0%
GTACTTCATACATGGTAGTA+TGG + chr6_2:23198757-23198776 Msa0913110:intron 35.0%
TTGCTGTCTTAATTCGTATC+AGG + chr6_2:23198814-23198833 Msa0913110:intron 35.0%
!!! TGTATTTTATTTTGGTGCGC+TGG + chr6_2:23198837-23198856 Msa0913110:three_prime_UTR 35.0%
GCCGAAGAACTTAATAAACT+AGG + chr6_2:23198865-23198884 Msa0913110:three_prime_UTR 35.0%
TTAGTTAGAAATGCTCCTTG+TGG - chr6_2:23198930-23198949 None:intergenic 35.0%
!! CCACATCAATTTGCTATAAC+GGG - chr6_2:23198970-23198989 None:intergenic 35.0%
!! GCCACATCAATTTGCTATAA+CGG - chr6_2:23198971-23198990 None:intergenic 35.0%
TAGATCTGCAGTGAATTGAA+AGG + chr6_2:23199196-23199215 Msa0913110:three_prime_UTR 35.0%
AGATCTGCAGTGAATTGAAA+GGG + chr6_2:23199197-23199216 Msa0913110:three_prime_UTR 35.0%
GAAAGATAAAAGGAGGTAAG+GGG + chr6_2:23199242-23199261 Msa0913110:three_prime_UTR 35.0%
TAGAAACATAGGGCTGAAAA+TGG + chr6_2:23199334-23199353 Msa0913110:three_prime_UTR 35.0%
!!! TTTGTTTGGCTTTTCTACTG+AGG + chr6_2:23199441-23199460 Msa0913110:three_prime_UTR 35.0%
ACAATGAAGATCTCACAAGT+TGG + chr6_2:23198026-23198045 Msa0913110:CDS 35.0%
AAGTAACTGAGCTTGATCAA+AGG + chr6_2:23198245-23198264 Msa0913110:CDS 35.0%
AGTAACTGAGCTTGATCAAA+GGG + chr6_2:23198246-23198265 Msa0913110:CDS 35.0%
CAAGTAATCCTTATTGCAGA+AGG - chr6_2:23198344-23198363 None:intergenic 35.0%
ATCGTCAAATTATGGACTTC+AGG + chr6_2:23198380-23198399 Msa0913110:intron 35.0%
TCGTCAAATTATGGACTTCA+GGG + chr6_2:23198381-23198400 Msa0913110:intron 35.0%
! CTATGGTGAATTGGTGATAA+GGG - chr6_2:23198460-23198479 None:intergenic 35.0%
! ACTATGGTGAATTGGTGATA+AGG - chr6_2:23198461-23198480 None:intergenic 35.0%
ATGGTTAAGTGCTTGAACTA+TGG - chr6_2:23198477-23198496 None:intergenic 35.0%
!!! TATCAACTCCATTTTTGGCA+TGG - chr6_2:23198496-23198515 None:intergenic 35.0%
!! TTGATATTGTTTCTGGAACC+AGG + chr6_2:23198510-23198529 Msa0913110:three_prime_UTR 35.0%
!! TGATATTGTTTCTGGAACCA+GGG + chr6_2:23198511-23198530 Msa0913110:three_prime_UTR 35.0%
CAAAAATAGAATGCTTACCC+TGG - chr6_2:23198531-23198550 None:intergenic 35.0%
AGTCTCCATCAAGTATATGT+TGG + chr6_2:23198735-23198754 Msa0913110:intron 35.0%
GTACTTCATACATGGTAGTA+TGG + chr6_2:23198757-23198776 Msa0913110:intron 35.0%
TTGCTGTCTTAATTCGTATC+AGG + chr6_2:23198814-23198833 Msa0913110:intron 35.0%
!!! TGTATTTTATTTTGGTGCGC+TGG + chr6_2:23198837-23198856 Msa0913110:three_prime_UTR 35.0%
GCCGAAGAACTTAATAAACT+AGG + chr6_2:23198865-23198884 Msa0913110:three_prime_UTR 35.0%
TTAGTTAGAAATGCTCCTTG+TGG - chr6_2:23198930-23198949 None:intergenic 35.0%
!! CCACATCAATTTGCTATAAC+GGG - chr6_2:23198970-23198989 None:intergenic 35.0%
!! GCCACATCAATTTGCTATAA+CGG - chr6_2:23198971-23198990 None:intergenic 35.0%
TAGATCTGCAGTGAATTGAA+AGG + chr6_2:23199196-23199215 Msa0913110:three_prime_UTR 35.0%
AGATCTGCAGTGAATTGAAA+GGG + chr6_2:23199197-23199216 Msa0913110:three_prime_UTR 35.0%
GAAAGATAAAAGGAGGTAAG+GGG + chr6_2:23199242-23199261 Msa0913110:three_prime_UTR 35.0%
TAGAAACATAGGGCTGAAAA+TGG + chr6_2:23199334-23199353 Msa0913110:three_prime_UTR 35.0%
!!! TTTGTTTGGCTTTTCTACTG+AGG + chr6_2:23199441-23199460 Msa0913110:three_prime_UTR 35.0%
TATAGGGTTACAAGAGAGCA+AGG + chr6_2:23198190-23198209 Msa0913110:intron 40.0%
!!! GGCTCTTTTCATTGGTTCAA+AGG + chr6_2:23198211-23198230 Msa0913110:CDS 40.0%
! AGCTTGATCAAAGGGTACAT+TGG + chr6_2:23198254-23198273 Msa0913110:intron 40.0%
! TCCTTTTCCCTTCTGCAATA+AGG + chr6_2:23198333-23198352 Msa0913110:intron 40.0%
TCCTTATTGCAGAAGGGAAA+AGG - chr6_2:23198337-23198356 None:intergenic 40.0%
AACTACTTAACTAGCGAGGA+AGG + chr6_2:23198420-23198439 Msa0913110:CDS 40.0%
GTGCTTGAACTATGGTGAAT+TGG - chr6_2:23198469-23198488 None:intergenic 40.0%
GCACTTAACCATGCCAAAAA+TGG + chr6_2:23198485-23198504 Msa0913110:three_prime_UTR 40.0%
! AGGTACAGACACATTTTGCT+AGG + chr6_2:23198651-23198670 Msa0913110:intron 40.0%
! CACATTTTGCTAGGCCTAAT+TGG + chr6_2:23198660-23198679 Msa0913110:three_prime_UTR 40.0%
TGCTAGGCCTAATTGGAAAA+AGG + chr6_2:23198667-23198686 Msa0913110:three_prime_UTR 40.0%
ATGTGTTCCAAGCACTATAG+TGG + chr6_2:23198701-23198720 Msa0913110:three_prime_UTR 40.0%
TATTCGTCCACTATAGTGCT+TGG - chr6_2:23198711-23198730 None:intergenic 40.0%
!! AAGCACTATAGTGGACGAAT+AGG + chr6_2:23198710-23198729 Msa0913110:three_prime_UTR 40.0%
ACAGCAATAATGTCAGAGCA+AGG - chr6_2:23198801-23198820 None:intergenic 40.0%
!!! TTATTTTGGTGCGCTGGTTT+TGG + chr6_2:23198843-23198862 Msa0913110:three_prime_UTR 40.0%
! AGGCTTCGAGTTCAATGAAA+AGG + chr6_2:23198885-23198904 Msa0913110:three_prime_UTR 40.0%
! GGCTTCGAGTTCAATGAAAA+GGG + chr6_2:23198886-23198905 Msa0913110:three_prime_UTR 40.0%
CCCGTTATAGCAAATTGATG+TGG + chr6_2:23198967-23198986 Msa0913110:three_prime_UTR 40.0%
TATCAGACAGCAAACATGCT+TGG + chr6_2:23199058-23199077 Msa0913110:three_prime_UTR 40.0%
AATTGAAAGGGACAGTTCTG+AGG + chr6_2:23199209-23199228 Msa0913110:three_prime_UTR 40.0%
! ACCGAACCCTGATTTTTGTT+TGG + chr6_2:23199427-23199446 Msa0913110:three_prime_UTR 40.0%
GCCAAACAAAAATCAGGGTT+CGG - chr6_2:23199431-23199450 None:intergenic 40.0%
CATATAGACCTTTCCTCTGA+GGG - chr6_2:23199472-23199491 None:intergenic 40.0%
ACATATAGACCTTTCCTCTG+AGG - chr6_2:23199473-23199492 None:intergenic 40.0%
TATAGGGTTACAAGAGAGCA+AGG + chr6_2:23198190-23198209 Msa0913110:intron 40.0%
!!! GGCTCTTTTCATTGGTTCAA+AGG + chr6_2:23198211-23198230 Msa0913110:CDS 40.0%
! AGCTTGATCAAAGGGTACAT+TGG + chr6_2:23198254-23198273 Msa0913110:intron 40.0%
! TCCTTTTCCCTTCTGCAATA+AGG + chr6_2:23198333-23198352 Msa0913110:intron 40.0%
TCCTTATTGCAGAAGGGAAA+AGG - chr6_2:23198337-23198356 None:intergenic 40.0%
AACTACTTAACTAGCGAGGA+AGG + chr6_2:23198420-23198439 Msa0913110:CDS 40.0%
GTGCTTGAACTATGGTGAAT+TGG - chr6_2:23198469-23198488 None:intergenic 40.0%
GCACTTAACCATGCCAAAAA+TGG + chr6_2:23198485-23198504 Msa0913110:three_prime_UTR 40.0%
! AGGTACAGACACATTTTGCT+AGG + chr6_2:23198651-23198670 Msa0913110:intron 40.0%
! CACATTTTGCTAGGCCTAAT+TGG + chr6_2:23198660-23198679 Msa0913110:three_prime_UTR 40.0%
TGCTAGGCCTAATTGGAAAA+AGG + chr6_2:23198667-23198686 Msa0913110:three_prime_UTR 40.0%
ATGTGTTCCAAGCACTATAG+TGG + chr6_2:23198701-23198720 Msa0913110:three_prime_UTR 40.0%
TATTCGTCCACTATAGTGCT+TGG - chr6_2:23198711-23198730 None:intergenic 40.0%
!! AAGCACTATAGTGGACGAAT+AGG + chr6_2:23198710-23198729 Msa0913110:three_prime_UTR 40.0%
ACAGCAATAATGTCAGAGCA+AGG - chr6_2:23198801-23198820 None:intergenic 40.0%
!!! TTATTTTGGTGCGCTGGTTT+TGG + chr6_2:23198843-23198862 Msa0913110:three_prime_UTR 40.0%
! AGGCTTCGAGTTCAATGAAA+AGG + chr6_2:23198885-23198904 Msa0913110:three_prime_UTR 40.0%
! GGCTTCGAGTTCAATGAAAA+GGG + chr6_2:23198886-23198905 Msa0913110:three_prime_UTR 40.0%
CCCGTTATAGCAAATTGATG+TGG + chr6_2:23198967-23198986 Msa0913110:three_prime_UTR 40.0%
TATCAGACAGCAAACATGCT+TGG + chr6_2:23199058-23199077 Msa0913110:three_prime_UTR 40.0%
AATTGAAAGGGACAGTTCTG+AGG + chr6_2:23199209-23199228 Msa0913110:three_prime_UTR 40.0%
! ACCGAACCCTGATTTTTGTT+TGG + chr6_2:23199427-23199446 Msa0913110:three_prime_UTR 40.0%
GCCAAACAAAAATCAGGGTT+CGG - chr6_2:23199431-23199450 None:intergenic 40.0%
CATATAGACCTTTCCTCTGA+GGG - chr6_2:23199472-23199491 None:intergenic 40.0%
ACATATAGACCTTTCCTCTG+AGG - chr6_2:23199473-23199492 None:intergenic 40.0%
! GAGAGCAAGGCTCTTTTCAT+TGG + chr6_2:23198203-23198222 Msa0913110:CDS 45.0%
GCACAACTACTTAACTAGCG+AGG + chr6_2:23198416-23198435 Msa0913110:CDS 45.0%
TAAAAGGAGGTAAGGGGACA+AGG + chr6_2:23199248-23199267 Msa0913110:three_prime_UTR 45.0%
AAAAGGAGGTAAGGGGACAA+GGG + chr6_2:23199249-23199268 Msa0913110:three_prime_UTR 45.0%
ACGCTGGAATCGTCATGTAA+GGG + chr6_2:23199363-23199382 Msa0913110:three_prime_UTR 45.0%
TACTGAGGAATTTCCCTCAG+AGG + chr6_2:23199456-23199475 Msa0913110:three_prime_UTR 45.0%
AGGAATTTCCCTCAGAGGAA+AGG + chr6_2:23199461-23199480 Msa0913110:three_prime_UTR 45.0%
! AGCTCTAGTCGTAACCTTGA+TGG - chr6_2:23199529-23199548 None:intergenic 45.0%
! GAGAGCAAGGCTCTTTTCAT+TGG + chr6_2:23198203-23198222 Msa0913110:CDS 45.0%
GCACAACTACTTAACTAGCG+AGG + chr6_2:23198416-23198435 Msa0913110:CDS 45.0%
TAAAAGGAGGTAAGGGGACA+AGG + chr6_2:23199248-23199267 Msa0913110:three_prime_UTR 45.0%
AAAAGGAGGTAAGGGGACAA+GGG + chr6_2:23199249-23199268 Msa0913110:three_prime_UTR 45.0%
ACGCTGGAATCGTCATGTAA+GGG + chr6_2:23199363-23199382 Msa0913110:three_prime_UTR 45.0%
TACTGAGGAATTTCCCTCAG+AGG + chr6_2:23199456-23199475 Msa0913110:three_prime_UTR 45.0%
AGGAATTTCCCTCAGAGGAA+AGG + chr6_2:23199461-23199480 Msa0913110:three_prime_UTR 45.0%
! AGCTCTAGTCGTAACCTTGA+TGG - chr6_2:23199529-23199548 None:intergenic 45.0%
AGGTAAGGGGACAAGGGATT+TGG + chr6_2:23199255-23199274 Msa0913110:three_prime_UTR 50.0%
CTGAAAATGGTGACTCACGC+TGG + chr6_2:23199347-23199366 Msa0913110:three_prime_UTR 50.0%
CACGCTGGAATCGTCATGTA+AGG + chr6_2:23199362-23199381 Msa0913110:three_prime_UTR 50.0%
! ATCAGGGTTCGGTTGAGAGA+CGG - chr6_2:23199420-23199439 None:intergenic 50.0%
AGGTAAGGGGACAAGGGATT+TGG + chr6_2:23199255-23199274 Msa0913110:three_prime_UTR 50.0%
CTGAAAATGGTGACTCACGC+TGG + chr6_2:23199347-23199366 Msa0913110:three_prime_UTR 50.0%
CACGCTGGAATCGTCATGTA+AGG + chr6_2:23199362-23199381 Msa0913110:three_prime_UTR 50.0%
! ATCAGGGTTCGGTTGAGAGA+CGG - chr6_2:23199420-23199439 None:intergenic 50.0%
TCGGTTGAGAGACGGAGAGA+GGG - chr6_2:23199412-23199431 None:intergenic 55.0%
TTCGGTTGAGAGACGGAGAG+AGG - chr6_2:23199413-23199432 None:intergenic 55.0%
TCGGTTGAGAGACGGAGAGA+GGG - chr6_2:23199412-23199431 None:intergenic 55.0%
TTCGGTTGAGAGACGGAGAG+AGG - chr6_2:23199413-23199432 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 23198019 23199673 23198019 ID=Msa0913110;Name=Msa0913110
chr6_2 mRNA 23198019 23199673 23198019 ID=Msa0913110-mRNA-1;Parent=Msa0913110;Name=Msa0913110-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.75|0.6|0.8|0.75|0.8|5|970|79
chr6_2 exon 23198019 23198107 23198019 ID=Msa0913110-mRNA-1:exon:4587;Parent=Msa0913110-mRNA-1
chr6_2 exon 23198195 23198267 23198195 ID=Msa0913110-mRNA-1:exon:4588;Parent=Msa0913110-mRNA-1
chr6_2 exon 23198402 23198532 23198402 ID=Msa0913110-mRNA-1:exon:4589;Parent=Msa0913110-mRNA-1
chr6_2 exon 23198653 23198731 23198653 ID=Msa0913110-mRNA-1:exon:4590;Parent=Msa0913110-mRNA-1
chr6_2 exon 23198836 23199673 23198836 ID=Msa0913110-mRNA-1:exon:4591;Parent=Msa0913110-mRNA-1
chr6_2 CDS 23198019 23198107 23198019 ID=Msa0913110-mRNA-1:cds;Parent=Msa0913110-mRNA-1
chr6_2 CDS 23198195 23198267 23198195 ID=Msa0913110-mRNA-1:cds;Parent=Msa0913110-mRNA-1
chr6_2 CDS 23198402 23198479 23198402 ID=Msa0913110-mRNA-1:cds;Parent=Msa0913110-mRNA-1
chr6_2 three_prime_UTR 23198480 23198532 23198480 ID=Msa0913110-mRNA-1:three_prime_utr;Parent=Msa0913110-mRNA-1
chr6_2 three_prime_UTR 23198653 23198731 23198653 ID=Msa0913110-mRNA-1:three_prime_utr;Parent=Msa0913110-mRNA-1
chr6_2 three_prime_UTR 23198836 23199673 23198836 ID=Msa0913110-mRNA-1:three_prime_utr;Parent=Msa0913110-mRNA-1
Gene Sequence

>Msa0913110

ATGACAGACAATGAAGATCTCACAAGTTGGATAAATTGCACTAGATTTCTGCTCCTTTTTATCAAATTCAATAAGGGTTCTATTATAAGGGTTACAAGAGAGCAAGGCTCTTTTCATTGGTTCAAAGGAGTCATGAATGAAGTAACTGAGCTTGATCAAAGGGGTGTCATTGAGATGCACAACTACTTAACTAGCGAGGAAGGAGATGCTAGATCTGCCCTTATCACCAATTCACCATAG
Protein sequence

>Msa0913110

MTDNEDLTSWINCTRFLLLFIKFNKGSIIRVTREQGSFHWFKGVMNEVTELDQRGVIEMHNYLTSEEGDARSALITNSP*