AlfalfaGEDB | Msa0918410

M. sativa cultivar zhongmu-4 / Msa0918410

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363
PFAM: PF13041.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0918410	KEH26134.1	91.935	310	8	3	44	336	190	499	0.0	573

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0918410	sp\|Q9M1D8\|PP288_ARATH	63.548	310	96	3	44	336	157	466	7.30e-140	407

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0061340	Msa0918410	0.800077	1.706574e-48	-8.615850e-47
Msa0918410	Msa1137570	0.811298	7.509404e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0918410	MtrunA17_Chr6g0471201	91.935	310	8	3	44	336	214	523	0.0	572
Msa0918410	MtrunA17_Chr6g0471201	24.336	226	157	5	114	329	190	411	7.75e-11	63.2
Msa0918410	MtrunA17_Chr1g0203271	63.077	325	87	4	45	336	182	506	2.74e-140	407
Msa0918410	MtrunA17_Chr6g0479541	30.303	297	188	5	51	329	240	535	4.37e-38	143
Msa0918410	MtrunA17_Chr6g0479541	29.577	284	162	6	60	329	136	395	3.61e-30	120
Msa0918410	MtrunA17_Chr6g0479541	26.642	274	163	5	57	320	351	596	1.10e-22	99.0
Msa0918410	MtrunA17_Chr6g0479541	26.336	262	167	7	93	329	30	290	2.92e-16	79.7
Msa0918410	MtrunA17_Chr6g0482651	28.904	301	197	4	46	329	239	539	2.99e-37	140
Msa0918410	MtrunA17_Chr6g0482651	29.825	285	154	5	60	330	148	400	4.28e-34	131
Msa0918410	MtrunA17_Chr6g0482651	27.848	237	162	4	101	328	57	293	3.77e-22	97.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0918410	AT3G60050.2	63.548	310	96	3	44	336	157	466	7.42e-141	407
Msa0918410	AT3G60050.1	63.548	310	96	3	44	336	157	466	7.42e-141	407
Msa0918410	AT1G55630.1	62.866	307	97	3	44	333	160	466	1.93e-137	399
Msa0918410	AT3G60040.4	60.684	117	39	1	224	333	493	609	4.55e-40	149
Msa0918410	AT3G60040.3	60.684	117	39	1	224	333	713	829	8.42e-40	149
Msa0918410	AT3G60040.1	60.684	117	39	1	224	333	712	828	9.08e-40	149
Msa0918410	AT3G22470.1	31.379	290	181	6	58	330	197	485	8.22e-39	145
Msa0918410	AT3G22470.1	29.097	299	187	7	52	329	261	555	1.94e-30	122
Msa0918410	AT3G22470.1	28.866	291	183	5	56	329	132	415	7.32e-30	120
Msa0918410	AT3G22470.1	29.032	279	158	6	58	325	337	586	3.72e-26	109

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Find 78 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGTTACGGCAGATGA+TGG	0.500882	6_2:-46101279	Msa0918410:CDS
AAAATTGGGACTACATCCTT+TGG	0.445353	6_2:+46101361	None:intergenic
AAAGAGAAATTGTACCTTTG+GGG	0.599725	6_2:+46102960	None:intergenic
AACATGAAGAATGATATTAT+AGG	0.452810	6_2:+46101754	None:intergenic
AATATCATTCTTCATGTTCT+CGG	0.380114	6_2:-46101749	Msa0918410:intron
AATGATCACCGGATATGTGG+TGG	0.734042	6_2:-46101534	Msa0918410:CDS
AATTGTAGGTAAATACATTT+GGG	0.351798	6_2:+46101453	None:intergenic
ACAGTGTATGCTACCACATC+TGG	0.347693	6_2:+46101557	None:intergenic
ACCTACAATTCCATGATTCG+TGG	0.490586	6_2:-46101440	Msa0918410:CDS
ACTGAGTAGATCAGGACGTT+TGG	0.480680	6_2:-46101627	Msa0918410:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGAAATTGTACCTTTG+GGG	+	chr6_2:46101377-46101396	None:intergenic	30.0%
GAAAAGAGAAATTGTACCTT+TGG	+	chr6_2:46101379-46101398	None:intergenic	30.0%
TACCTTATTAGGTCATAGAA+TGG	-	chr6_2:46101549-46101568	Msa0918410:CDS	30.0%
AACCATTCTATGACCTAATA+AGG	+	chr6_2:46101554-46101573	None:intergenic	30.0%
ATGAGGATGTTGTTAGAAAT+GGG	-	chr6_2:46101635-46101654	Msa0918410:CDS	30.0%
TTGTGAAGTTTATAAAGTCG+AGG	-	chr6_2:46102319-46102338	Msa0918410:intron	30.0%
ATTGTCTTCTTGTGTTGAAT+CGG	-	chr6_2:46102388-46102407	Msa0918410:intron	30.0%
GGAAGTTAAATCAGTTATAC+AGG	-	chr6_2:46102511-46102530	Msa0918410:intron	30.0%
AAAGAGAAATTGTACCTTTG+GGG	+	chr6_2:46101377-46101396	None:intergenic	30.0%
GAAAAGAGAAATTGTACCTT+TGG	+	chr6_2:46101379-46101398	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	46101250	46103106	46101250	ID=Msa0918410;Name=Msa0918410
chr6_2	mRNA	46101250	46103106	46101250	ID=Msa0918410-mRNA-1;Parent=Msa0918410;Name=Msa0918410-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0\|0.25\|0.2\|1\|0\|0\|5\|0\|336
chr6_2	exon	46101250	46101484	46101250	ID=Msa0918410-mRNA-1:exon:7215;Parent=Msa0918410-mRNA-1
chr6_2	exon	46101506	46101743	46101506	ID=Msa0918410-mRNA-1:exon:7214;Parent=Msa0918410-mRNA-1
chr6_2	exon	46101750	46101991	46101750	ID=Msa0918410-mRNA-1:exon:7213;Parent=Msa0918410-mRNA-1
chr6_2	exon	46102016	46102176	46102016	ID=Msa0918410-mRNA-1:exon:7212;Parent=Msa0918410-mRNA-1
chr6_2	exon	46102975	46103106	46102975	ID=Msa0918410-mRNA-1:exon:7211;Parent=Msa0918410-mRNA-1
chr6_2	CDS	46102975	46103106	46102975	ID=Msa0918410-mRNA-1:cds;Parent=Msa0918410-mRNA-1
chr6_2	CDS	46102016	46102176	46102016	ID=Msa0918410-mRNA-1:cds;Parent=Msa0918410-mRNA-1
chr6_2	CDS	46101750	46101991	46101750	ID=Msa0918410-mRNA-1:cds;Parent=Msa0918410-mRNA-1
chr6_2	CDS	46101506	46101743	46101506	ID=Msa0918410-mRNA-1:cds;Parent=Msa0918410-mRNA-1
chr6_2	CDS	46101250	46101484	46101250	ID=Msa0918410-mRNA-1:cds;Parent=Msa0918410-mRNA-1

Gene Sequence

>Msa0918410

TTCAGATTCGCAATATCCTCCACCACCACTACACTTCCCACTACACAACAATGCATTCTACCTCGCAATGACTCAATTTCTCATCACCCACTCCAATTTCTCGTCCCTCCCTCCAATTTCTCATCCCCAAAGATATTTGCTGAGTGTGAAGAGTTTAAGGCGATGTGGAGACTTGTTGATGAGATGATTGAGAAGGGTTTTCCTGTCACGGCTCGTACTTTCAATATTTTGATTTGTACTAGTGGTGAGGCGGGTTTTGCTAGGAATTTGGTTGTGAAGTTTATAAAGTCGAGACATTCTTATAATGCAATTTTACATTGTCTTCTTGTGTTGAATCGGTACAAGTTGATTGAGTGGGTTTATGACCAAATGTTGTTCGAGGGTTTTTTGTCGGATGTTTTGACTTATAATATTGTCATGGTTGCGAAATACAGACTTGGGAAGTTAAATCAGTTATACAGGTTGTTTCATGAGATGGGAGGAAATGGTCTTTCGCCGGATTTTCATACCTATAATATCATTCTTCATGTTCTCGGGGGCGAACTGTGTAAAGCTGTTGAACTTTTGAATCACATGAGAGAAAGAGGTATAGAGCCAACTGTTGTGCATTACACAACACTCATAGATGGACTGAGTAGATCAGGACGTTTGGATGACTGTGAATATATTTTTGATGAAATGGTGAGGATTGGCTGCATCCCAGATGTGGTAGCATACACTGTAATGATCACCGGATATGTGGTGGCTCTTGAGTTCGAGAAAGCTCAGGAAATAGGACAAATCCCAAATGTATTTACCTACAATTCCATGATTCGTGGATTTTGTATGGCAGGAAAGTTTGACGAAGCATGCTCAATGCTTAAGGAAATGGAGACCAAAGGATGTAGTCCCAATTTTGTTGTCTATAGTACATTAGTGACTAGTCTACGAAAGGCTGGAAAGCTTTCTAGAGCTCGAAAAGTGTTACGGCAGATGATGGAGAAGGGGAGGAATGTCCACCATCTTCCC

Protein sequence

>Msa0918410

FRFAISSTTTTLPTTQQCILPRNDSISHHPLQFLVPPSNFSSPKIFAECEEFKAMWRLVDEMIEKGFPVTARTFNILICTSGEAGFARNLVVKFIKSRHSYNAILHCLLVLNRYKLIEWVYDQMLFEGFLSDVLTYNIVMVAKYRLGKLNQLYRLFHEMGGNGLSPDFHTYNIILHVLGGELCKAVELLNHMRERGIEPTVVHYTTLIDGLSRSGRLDDCEYIFDEMVRIGCIPDVVAYTVMITGYVVALEFEKAQEIGQIPNVFTYNSMIRGFCMAGKFDEACSMLKEMETKGCSPNFVVYSTLVTSLRKAGKLSRARKVLRQMMEKGRNVHHLP