AlfalfaGEDB | Msa1137570

M. sativa cultivar zhongmu-4 / Msa1137570

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0012505 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1137570	XP_003621609.1	96.885	321	10	0	5	325	1	321	0.0	617

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1137570	sp\|Q8L7E5\|WIT1_ARATH	36.578	339	186	6	14	325	37	373	1.68e-44	165

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1137570	G7KS23	96.885	321	10	0	5	325	1	321	0.0	617

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa1137570	-0.813046	3.121070e-51	-8.615850e-47
Msa0002230	Msa1137570	0.838020	3.684393e-57	-8.615850e-47
Msa0002240	Msa1137570	0.826522	2.590766e-54	-8.615850e-47
Msa0002460	Msa1137570	0.802336	5.887003e-49	-8.615850e-47
Msa0002680	Msa1137570	0.801822	7.510097e-49	-8.615850e-47
Msa0002710	Msa1137570	0.812109	5.003063e-51	-8.615850e-47
Msa0003700	Msa1137570	0.848680	5.252372e-60	-8.615850e-47
Msa0003720	Msa1137570	0.826528	2.581871e-54	-8.615850e-47
Msa0003890	Msa1137570	0.881535	2.214790e-70	-8.615850e-47
Msa0006070	Msa1137570	0.817521	3.157901e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1137570	MtrunA17_Chr7g0220541	96.885	321	10	0	5	325	1	321	0.0	617
Msa1137570	MtrunA17_Chr3g0123611	50.473	317	135	6	2	303	8	317	3.25e-75	242
Msa1137570	MtrunA17_Chr6g0470981	35.644	303	170	6	13	296	15	311	1.65e-36	139

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1137570	AT5G11390.1	36.578	339	186	6	14	325	37	373	1.71e-45	165
Msa1137570	AT1G68910.2	32.188	320	183	7	28	326	26	332	7.07e-35	134
Msa1137570	AT1G68910.3	32.188	320	183	7	28	326	26	332	7.07e-35	134
Msa1137570	AT1G68910.1	32.500	320	182	7	28	326	26	332	1.24e-34	134

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Find 52 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTAATTAAATAGCAATT+TGG	0.153354	7_4:-6420745	Msa1137570:intron
AACTTTGGAAGGTGAGTTAG+AGG	0.362708	7_4:-6422321	Msa1137570:CDS
AATACCGGTGATGTTGATGT+TGG	0.597119	7_4:-6422446	Msa1137570:CDS
AATCTCATAAAACTGCTCCT+CGG	0.609279	7_4:+6422106	None:intergenic
AATGCGCGTGAGATCCTGAA+GGG	0.678003	7_4:-6421177	Msa1137570:CDS
AATTAATTAAATAGCAATTT+GGG	0.197890	7_4:-6420744	Msa1137570:intron
ACAACAGGGAATGTTGAAGA+CGG	0.671738	7_4:-6421453	Msa1137570:intron
ACAAGAAACTGAATGCCAGT+TGG	0.639494	7_4:-6420950	Msa1137570:intron
ACACTTCATGCTGAGATTTC+TGG	0.186773	7_4:-6422182	Msa1137570:CDS
ACAGCTGAAGCAGTTAATTT+AGG	0.314252	7_4:-6421003	Msa1137570:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGAATTTGGAAACTTTGGA+AGG	-	chr7_4:6420892-6420911	Msa1137570:intron	30.0%
TGATGAAGAAAACATCGATA+TGG	-	chr7_4:6420936-6420955	Msa1137570:intron	30.0%
GACTTTGTCTTCTTATAAGA+AGG	-	chr7_4:6421167-6421186	Msa1137570:CDS	30.0%
TCTTATAAGAAGGAAGAGAA+TGG	-	chr7_4:6421177-6421196	Msa1137570:CDS	30.0%
GAGTTCCATTAATGCAAAAA+AGG	+	chr7_4:6421401-6421420	None:intergenic	30.0%
TATGAAGTCACACATATGAT+TGG	+	chr7_4:6421584-6421603	None:intergenic	30.0%
AGTTAGAACATTAACATTGC+TGG	+	chr7_4:6421633-6421652	None:intergenic	30.0%
TTGAAGAAAAGCTAAATCTG+AGG	-	chr7_4:6421946-6421965	Msa1137570:intron	30.0%
ATGAATTTGGAAACTTTGGA+AGG	-	chr7_4:6420892-6420911	Msa1137570:intron	30.0%
TGATGAAGAAAACATCGATA+TGG	-	chr7_4:6420936-6420955	Msa1137570:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	6420720	6422526	6420720	ID=Msa1137570;Name=Msa1137570
chr7_4	mRNA	6420720	6422526	6420720	ID=Msa1137570-mRNA-1;Parent=Msa1137570;Name=Msa1137570-mRNA-1;_AED=0.03;_eAED=0.03;_QI=22\|0.5\|0.33\|0.66\|1\|1\|3\|0\|335
chr7_4	exon	6420720	6420752	6420720	ID=Msa1137570-mRNA-1:exon:1770;Parent=Msa1137570-mRNA-1
chr7_4	exon	6420951	6421468	6420951	ID=Msa1137570-mRNA-1:exon:1769;Parent=Msa1137570-mRNA-1
chr7_4	exon	6422048	6422526	6422048	ID=Msa1137570-mRNA-1:exon:1768;Parent=Msa1137570-mRNA-1
chr7_4	five_prime_UTR	6422505	6422526	6422505	ID=Msa1137570-mRNA-1:five_prime_utr;Parent=Msa1137570-mRNA-1
chr7_4	CDS	6422048	6422504	6422048	ID=Msa1137570-mRNA-1:cds;Parent=Msa1137570-mRNA-1
chr7_4	CDS	6420951	6421468	6420951	ID=Msa1137570-mRNA-1:cds;Parent=Msa1137570-mRNA-1
chr7_4	CDS	6420720	6420752	6420720	ID=Msa1137570-mRNA-1:cds;Parent=Msa1137570-mRNA-1

Gene Sequence

>Msa1137570

ATGATTAGAACAATGGAAACTCAAAGTGTTGAAGATAATACCGGTGATGTTGATGTTGGAGGTGTTTCAGATAATGGAGAAGTTATTGTGGATTTTGAAATGAGTGTGGTATATTTCTCTGAGAAAGTTTCAAATTTGAGTATTTTTATGATGAATTTGGAAACTTTGGAAGGTGAGTTAGAGGGTTTAGTTTGTGATGAAGAAAACATCGATATGGATTGTGTTTTAAAGGGTTTTGAGTTTGATTTGTTATGTGGGGTGCTGGGTTCTGAGGTTAGAGATTTGGGTTTGTTTTTGGATACACTTCATGCTGAGATTTCTGGTGCTAGAGAGAGAGATTCTTCTTTGAACGATTGGCAAGAGAGGTTGGTTGAATCCGAGGAGCAGTTTTATGAGATTAAGAAACAATCTTTTAGTTTTGAAAGGACTTTGTCTTCTTATAAGAAGGAAGAGAATGGGAATGTTGAAGACGGTGGAAATGTCCAAGAGGATGATCAAACTTCGAATGTAAACAACATGATGAACATGCAAACGACTGAGCAACATAGAAACATTTTGAGGATGCTTGAGAAATCTTTGGCAAATGAAATAGATCTCGAGAAGAATTTCAACGACTCGAAGAAAATTGAAGAAAAGCTAAATCTGAGGATCCTTTCTTTAGAAGACGAGTTAATTCAAACAGAGGAAGAAGCAATCGAAGTTTGGGAAAGATTGTTCGAGGCAGACAATGCGCGTGAGATCCTGAAGGGAATTTCAAATGAAGTGTTGGCTAAACTCAAGCTTTCTCAGTTCAATTTGGTTGGTTTAAGAAAAAGTGAATCCGAGCTTAGAGATAAGCTGGAAACTTCTATAGAGCAATTGAAAAAAAGAGACGTTAATTTGGAAAAGATCGAAAGCAGCACAGCTGAAGCAGTTAATTTAGGCGACAAAGTGTGCTCACTTGAGAAGCAGCTACAAGAAACTGAATGCCAGTTGCAATTTGGGGTGTTACAACTCTCCTTCACTTAA

Protein sequence

>Msa1137570

MIRTMETQSVEDNTGDVDVGGVSDNGEVIVDFEMSVVYFSEKVSNLSIFMMNLETLEGELEGLVCDEENIDMDCVLKGFEFDLLCGVLGSEVRDLGLFLDTLHAEISGARERDSSLNDWQERLVESEEQFYEIKKQSFSFERTLSSYKKEENGNVEDGGNVQEDDQTSNVNNMMNMQTTEQHRNILRMLEKSLANEIDLEKNFNDSKKIEEKLNLRILSLEDELIQTEEEAIEVWERLFEADNAREILKGISNEVLAKLKLSQFNLVGLRKSESELRDKLETSIEQLKKRDVNLEKIESSTAEAVNLGDKVCSLEKQLQETECQLQFGVLQLSFT*