AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1137570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1137570 MtrunA17_Chr7g0220541 96.885 321 10 0 5 325 1 321 0.0 617
Msa1137570 MtrunA17_Chr3g0123611 50.473 317 135 6 2 303 8 317 3.25e-75 242
Msa1137570 MtrunA17_Chr6g0470981 35.644 303 170 6 13 296 15 311 1.65e-36 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1137570 AT5G11390.1 36.578 339 186 6 14 325 37 373 1.71e-45 165
Msa1137570 AT1G68910.2 32.188 320 183 7 28 326 26 332 7.07e-35 134
Msa1137570 AT1G68910.3 32.188 320 183 7 28 326 26 332 7.07e-35 134
Msa1137570 AT1G68910.1 32.500 320 182 7 28 326 26 332 1.24e-34 134

Find 52 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTAATTAAATAGCAATT+TGG 0.153354 7_4:-6420745 Msa1137570:intron
ACACTTCATGCTGAGATTTC+TGG 0.186773 7_4:-6422182 Msa1137570:CDS
AATTAATTAAATAGCAATTT+GGG 0.197890 7_4:-6420744 Msa1137570:intron
CAAGCTTTCTCAGTTCAATT+TGG 0.215388 7_4:-6421127 Msa1137570:CDS
GGTTCTGAGGTTAGAGATTT+GGG 0.265934 7_4:-6422218 Msa1137570:CDS
GGGTTCTGAGGTTAGAGATT+TGG 0.291296 7_4:-6422219 Msa1137570:CDS
AGGAAGAAGCAATCGAAGTT+TGG 0.300071 7_4:-6421221 Msa1137570:CDS
TGATTTGTTATGTGGGGTGC+TGG 0.301024 7_4:-6422240 Msa1137570:CDS
ACAGCTGAAGCAGTTAATTT+AGG 0.314252 7_4:-6421003 Msa1137570:CDS
TGATGAAGAAAACATCGATA+TGG 0.316839 7_4:-6422288 Msa1137570:CDS
TATGATGAATTTGGAAACTT+TGG 0.334665 7_4:-6422336 Msa1137570:CDS
GAGGATGCTTGAGAAATCTT+TGG 0.339008 7_4:-6421346 Msa1137570:CDS
GTTGGAGGTGTTTCAGATAA+TGG 0.340110 7_4:-6422428 Msa1137570:CDS
CTTCATTTGAAATTCCCTTC+AGG 0.351204 7_4:+6421163 None:intergenic
TTTGAGTTTGATTTGTTATG+TGG 0.355398 7_4:-6422248 Msa1137570:CDS
AACTTTGGAAGGTGAGTTAG+AGG 0.362708 7_4:-6422321 Msa1137570:CDS
TTGAGTTTGATTTGTTATGT+GGG 0.386095 7_4:-6422247 Msa1137570:CDS
GAGATTCTTCTTTGAACGAT+TGG 0.400387 7_4:-6422148 Msa1137570:CDS
GGAAGAAGCAATCGAAGTTT+GGG 0.409580 7_4:-6421220 Msa1137570:CDS
TCGAAGTTTGATCATCCTCT+TGG 0.428130 7_4:+6421421 None:intergenic
CTTTCTCAGTTCAATTTGGT+TGG 0.429559 7_4:-6421123 Msa1137570:CDS
GACTTTGTCTTCTTATAAGA+AGG 0.441599 7_4:-6422057 Msa1137570:CDS
GGGAATTTCAAATGAAGTGT+TGG 0.466188 7_4:-6421157 Msa1137570:CDS
TTCCAGCTTATCTCTAAGCT+CGG 0.467512 7_4:+6421083 None:intergenic
ATCCGAGCTTAGAGATAAGC+TGG 0.490624 7_4:-6421085 Msa1137570:CDS
TTAACTCGTCTTCTAAAGAA+AGG 0.496891 7_4:+6421253 None:intergenic
GATTTGTTATGTGGGGTGCT+GGG 0.499035 7_4:-6422239 Msa1137570:CDS
ATGTGGGGTGCTGGGTTCTG+AGG 0.507959 7_4:-6422231 Msa1137570:CDS
GAACGATTGGCAAGAGAGGT+TGG 0.512420 7_4:-6422135 Msa1137570:CDS
CTTTGAACGATTGGCAAGAG+AGG 0.530964 7_4:-6422139 Msa1137570:CDS
CAAAGTGTTGAAGATAATAC+CGG 0.537217 7_4:-6422461 Msa1137570:CDS
AGATAATGGAGAAGTTATTG+TGG 0.538820 7_4:-6422414 Msa1137570:CDS
GGGCTAAATTCTTTAAGTGA+AGG 0.542738 7_4:+6420708 None:intergenic
AGTTTGGGAAAGATTGTTCG+AGG 0.563101 7_4:-6421205 Msa1137570:CDS
ATGAATTTGGAAACTTTGGA+AGG 0.568364 7_4:-6422332 Msa1137570:CDS
TGAGTTTGATTTGTTATGTG+GGG 0.573199 7_4:-6422246 Msa1137570:CDS
ATTAATTAAATAGCAATTTG+GGG 0.576351 7_4:-6420743 Msa1137570:intron
TCTTATAAGAAGGAAGAGAA+TGG 0.577851 7_4:-6422047 Msa1137570:intron
ACCTCCAACATCAACATCAC+CGG 0.581822 7_4:+6422442 None:intergenic
ACCGGTGATGTTGATGTTGG+AGG 0.584105 7_4:-6422443 Msa1137570:CDS
AATACCGGTGATGTTGATGT+TGG 0.597119 7_4:-6422446 Msa1137570:CDS
AGAGAGGTTGGTTGAATCCG+AGG 0.600549 7_4:-6422123 Msa1137570:CDS
AATCTCATAAAACTGCTCCT+CGG 0.609279 7_4:+6422106 None:intergenic
ACTTTGGAAGGTGAGTTAGA+GGG 0.620732 7_4:-6422320 Msa1137570:CDS
TTGAAGAAAAGCTAAATCTG+AGG 0.628560 7_4:-6421278 Msa1137570:CDS
AGACGAGTTAATTCAAACAG+AGG 0.633790 7_4:-6421241 Msa1137570:CDS
ACAAGAAACTGAATGCCAGT+TGG 0.639494 7_4:-6420950 Msa1137570:intron
CAATGCGCGTGAGATCCTGA+AGG 0.651405 7_4:-6421178 Msa1137570:CDS
ACAACAGGGAATGTTGAAGA+CGG 0.671738 7_4:-6421453 Msa1137570:intron
AATGCGCGTGAGATCCTGAA+GGG 0.678003 7_4:-6421177 Msa1137570:CDS
ACAGGGAATGTTGAAGACGG+TGG 0.694865 7_4:-6421450 Msa1137570:intron
AGACGGTGGAAATGTCCAAG+AGG 0.721239 7_4:-6421436 Msa1137570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTTAAAAAATAAGAAA+AGG - chr7_4:6421428-6421447 Msa1137570:CDS 10.0%
!! TTATTAGAAATGAAAATTTA+GGG + chr7_4:6421713-6421732 None:intergenic 10.0%
!! TTTATTAGAAATGAAAATTT+AGG + chr7_4:6421714-6421733 None:intergenic 10.0%
!! TTAATTTAATAAGGTTAAAT+AGG + chr7_4:6422466-6422485 None:intergenic 10.0%
!! GCTATTTAATTAATTTAATA+AGG + chr7_4:6422475-6422494 None:intergenic 10.0%
!! AAATTAATTAAATAGCAATT+TGG - chr7_4:6422479-6422498 Msa1137570:CDS 10.0%
!! AATTAATTAAATAGCAATTT+GGG - chr7_4:6422480-6422499 Msa1137570:CDS 10.0%
!!! TTGTTTTAAAAAATAAGAAA+AGG - chr7_4:6421428-6421447 Msa1137570:CDS 10.0%
!! TTATTAGAAATGAAAATTTA+GGG + chr7_4:6421713-6421732 None:intergenic 10.0%
!! TTTATTAGAAATGAAAATTT+AGG + chr7_4:6421714-6421733 None:intergenic 10.0%
!! TTAATTTAATAAGGTTAAAT+AGG + chr7_4:6422466-6422485 None:intergenic 10.0%
!! GCTATTTAATTAATTTAATA+AGG + chr7_4:6422475-6422494 None:intergenic 10.0%
!! AAATTAATTAAATAGCAATT+TGG - chr7_4:6422479-6422498 Msa1137570:CDS 10.0%
!! AATTAATTAAATAGCAATTT+GGG - chr7_4:6422480-6422499 Msa1137570:CDS 10.0%
!! ATTAATTAAATAGCAATTTG+GGG - chr7_4:6422481-6422500 Msa1137570:CDS 15.0%
!! ATTAATTAAATAGCAATTTG+GGG - chr7_4:6422481-6422500 Msa1137570:CDS 15.0%
!!! GTTTTTTATGATTAGAACAA+TGG - chr7_4:6420735-6420754 Msa1137570:intron 20.0%
!!! GAGTATTTTTATGATGAATT+TGG - chr7_4:6420879-6420898 Msa1137570:intron 20.0%
!!! AACAATCTTTTAGTTTTGAA+AGG - chr7_4:6421145-6421164 Msa1137570:CDS 20.0%
!! TTTCATTTAGTTGTTAGAAA+AGG - chr7_4:6421299-6421318 Msa1137570:CDS 20.0%
!! TTCATTTAGTTGTTAGAAAA+GGG - chr7_4:6421300-6421319 Msa1137570:CDS 20.0%
!! ATAAAAATATTCTCATTGGT+CGG + chr7_4:6421490-6421509 None:intergenic 20.0%
!! TCAGATAAAAATATTCTCAT+TGG + chr7_4:6421494-6421513 None:intergenic 20.0%
!! TAATTCATATACACAATCAA+TGG + chr7_4:6421688-6421707 None:intergenic 20.0%
!!! GTTTTTTATGATTAGAACAA+TGG - chr7_4:6420735-6420754 Msa1137570:intron 20.0%
!!! GAGTATTTTTATGATGAATT+TGG - chr7_4:6420879-6420898 Msa1137570:intron 20.0%
!!! AACAATCTTTTAGTTTTGAA+AGG - chr7_4:6421145-6421164 Msa1137570:CDS 20.0%
!! TTTCATTTAGTTGTTAGAAA+AGG - chr7_4:6421299-6421318 Msa1137570:CDS 20.0%
!! TTCATTTAGTTGTTAGAAAA+GGG - chr7_4:6421300-6421319 Msa1137570:CDS 20.0%
!! ATAAAAATATTCTCATTGGT+CGG + chr7_4:6421490-6421509 None:intergenic 20.0%
!! TCAGATAAAAATATTCTCAT+TGG + chr7_4:6421494-6421513 None:intergenic 20.0%
!! TAATTCATATACACAATCAA+TGG + chr7_4:6421688-6421707 None:intergenic 20.0%
! TATGATGAATTTGGAAACTT+TGG - chr7_4:6420888-6420907 Msa1137570:intron 25.0%
!!! GATATGGATTGTGTTTTAAA+GGG - chr7_4:6420952-6420971 Msa1137570:CDS 25.0%
!!! TTTGAGTTTGATTTGTTATG+TGG - chr7_4:6420976-6420995 Msa1137570:CDS 25.0%
!!! TTGAGTTTGATTTGTTATGT+GGG - chr7_4:6420977-6420996 Msa1137570:CDS 25.0%
! ATGTAACAGATAAAAACAAC+AGG + chr7_4:6421269-6421288 None:intergenic 25.0%
! TAACAACTAAATGAAAAGAC+AGG + chr7_4:6421295-6421314 None:intergenic 25.0%
! GAAAATCCAACACATAAAAA+AGG + chr7_4:6421747-6421766 None:intergenic 25.0%
! GAAAAAAAGAGACGTTAATT+TGG - chr7_4:6422181-6422200 Msa1137570:CDS 25.0%
! TAATAAGGTTAAATAGGTGA+AGG + chr7_4:6422460-6422479 None:intergenic 25.0%
! TATGATGAATTTGGAAACTT+TGG - chr7_4:6420888-6420907 Msa1137570:intron 25.0%
!!! GATATGGATTGTGTTTTAAA+GGG - chr7_4:6420952-6420971 Msa1137570:CDS 25.0%
!!! TTTGAGTTTGATTTGTTATG+TGG - chr7_4:6420976-6420995 Msa1137570:CDS 25.0%
!!! TTGAGTTTGATTTGTTATGT+GGG - chr7_4:6420977-6420996 Msa1137570:CDS 25.0%
! ATGTAACAGATAAAAACAAC+AGG + chr7_4:6421269-6421288 None:intergenic 25.0%
! TAACAACTAAATGAAAAGAC+AGG + chr7_4:6421295-6421314 None:intergenic 25.0%
! GAAAATCCAACACATAAAAA+AGG + chr7_4:6421747-6421766 None:intergenic 25.0%
! GAAAAAAAGAGACGTTAATT+TGG - chr7_4:6422181-6422200 Msa1137570:CDS 25.0%
! TAATAAGGTTAAATAGGTGA+AGG + chr7_4:6422460-6422479 None:intergenic 25.0%
!! CAAAGTGTTGAAGATAATAC+CGG - chr7_4:6420763-6420782 Msa1137570:intron 30.0%
!! AGATAATGGAGAAGTTATTG+TGG - chr7_4:6420810-6420829 Msa1137570:intron 30.0%
ATGAATTTGGAAACTTTGGA+AGG - chr7_4:6420892-6420911 Msa1137570:intron 30.0%
TGATGAAGAAAACATCGATA+TGG - chr7_4:6420936-6420955 Msa1137570:intron 30.0%
!! CGATATGGATTGTGTTTTAA+AGG - chr7_4:6420951-6420970 Msa1137570:CDS 30.0%
!! TGAGTTTGATTTGTTATGTG+GGG - chr7_4:6420978-6420997 Msa1137570:CDS 30.0%
!! TAGAGATTTGGGTTTGTTTT+TGG - chr7_4:6421017-6421036 Msa1137570:CDS 30.0%
GACTTTGTCTTCTTATAAGA+AGG - chr7_4:6421167-6421186 Msa1137570:CDS 30.0%
TCTTATAAGAAGGAAGAGAA+TGG - chr7_4:6421177-6421196 Msa1137570:CDS 30.0%
!!! AAACGCCTTTTTTGCATTAA+TGG - chr7_4:6421393-6421412 Msa1137570:CDS 30.0%
GAGTTCCATTAATGCAAAAA+AGG + chr7_4:6421401-6421420 None:intergenic 30.0%
TATGAAGTCACACATATGAT+TGG + chr7_4:6421584-6421603 None:intergenic 30.0%
AGTTAGAACATTAACATTGC+TGG + chr7_4:6421633-6421652 None:intergenic 30.0%
! TTGGATTTTCAATGACAACA+GGG - chr7_4:6421757-6421776 Msa1137570:intron 30.0%
! AGCAACATAGAAACATTTTG+AGG - chr7_4:6421859-6421878 Msa1137570:intron 30.0%
TTGAAGAAAAGCTAAATCTG+AGG - chr7_4:6421946-6421965 Msa1137570:intron 30.0%
! TTAACTCGTCTTCTAAAGAA+AGG + chr7_4:6421974-6421993 None:intergenic 30.0%
!! CAAAGTGTTGAAGATAATAC+CGG - chr7_4:6420763-6420782 Msa1137570:intron 30.0%
!! AGATAATGGAGAAGTTATTG+TGG - chr7_4:6420810-6420829 Msa1137570:intron 30.0%
ATGAATTTGGAAACTTTGGA+AGG - chr7_4:6420892-6420911 Msa1137570:intron 30.0%
TGATGAAGAAAACATCGATA+TGG - chr7_4:6420936-6420955 Msa1137570:intron 30.0%
!! CGATATGGATTGTGTTTTAA+AGG - chr7_4:6420951-6420970 Msa1137570:CDS 30.0%
!! TGAGTTTGATTTGTTATGTG+GGG - chr7_4:6420978-6420997 Msa1137570:CDS 30.0%
!! TAGAGATTTGGGTTTGTTTT+TGG - chr7_4:6421017-6421036 Msa1137570:CDS 30.0%
GACTTTGTCTTCTTATAAGA+AGG - chr7_4:6421167-6421186 Msa1137570:CDS 30.0%
TCTTATAAGAAGGAAGAGAA+TGG - chr7_4:6421177-6421196 Msa1137570:CDS 30.0%
!!! AAACGCCTTTTTTGCATTAA+TGG - chr7_4:6421393-6421412 Msa1137570:CDS 30.0%
GAGTTCCATTAATGCAAAAA+AGG + chr7_4:6421401-6421420 None:intergenic 30.0%
TATGAAGTCACACATATGAT+TGG + chr7_4:6421584-6421603 None:intergenic 30.0%
AGTTAGAACATTAACATTGC+TGG + chr7_4:6421633-6421652 None:intergenic 30.0%
! TTGGATTTTCAATGACAACA+GGG - chr7_4:6421757-6421776 Msa1137570:intron 30.0%
! AGCAACATAGAAACATTTTG+AGG - chr7_4:6421859-6421878 Msa1137570:intron 30.0%
TTGAAGAAAAGCTAAATCTG+AGG - chr7_4:6421946-6421965 Msa1137570:intron 30.0%
! TTAACTCGTCTTCTAAAGAA+AGG + chr7_4:6421974-6421993 None:intergenic 30.0%
!!! TGTGGATTTTGAAATGAGTG+TGG - chr7_4:6420828-6420847 Msa1137570:intron 35.0%
GAGATTCTTCTTTGAACGAT+TGG - chr7_4:6421076-6421095 Msa1137570:CDS 35.0%
AATCTCATAAAACTGCTCCT+CGG + chr7_4:6421121-6421140 None:intergenic 35.0%
!! TTAGAAAAGGGTATCGTATG+TGG - chr7_4:6421312-6421331 Msa1137570:CDS 35.0%
!! TAGAAAAGGGTATCGTATGT+GGG - chr7_4:6421313-6421332 Msa1137570:CDS 35.0%
CATATGTGTGACTTCATAAG+TGG - chr7_4:6421586-6421605 Msa1137570:intron 35.0%
!!! TGCTGTCCTTTTTTATGTGT+TGG - chr7_4:6421738-6421757 Msa1137570:intron 35.0%
! GTTGGATTTTCAATGACAAC+AGG - chr7_4:6421756-6421775 Msa1137570:intron 35.0%
AGACGAGTTAATTCAAACAG+AGG - chr7_4:6421983-6422002 Msa1137570:intron 35.0%
! CTTCATTTGAAATTCCCTTC+AGG + chr7_4:6422064-6422083 None:intergenic 35.0%
GGGAATTTCAAATGAAGTGT+TGG - chr7_4:6422067-6422086 Msa1137570:CDS 35.0%
CAAGCTTTCTCAGTTCAATT+TGG - chr7_4:6422097-6422116 Msa1137570:CDS 35.0%
CTTTCTCAGTTCAATTTGGT+TGG - chr7_4:6422101-6422120 Msa1137570:CDS 35.0%
ACAGCTGAAGCAGTTAATTT+AGG - chr7_4:6422221-6422240 Msa1137570:CDS 35.0%
!!! TGTGGATTTTGAAATGAGTG+TGG - chr7_4:6420828-6420847 Msa1137570:intron 35.0%
GAGATTCTTCTTTGAACGAT+TGG - chr7_4:6421076-6421095 Msa1137570:CDS 35.0%
AATCTCATAAAACTGCTCCT+CGG + chr7_4:6421121-6421140 None:intergenic 35.0%
!! TTAGAAAAGGGTATCGTATG+TGG - chr7_4:6421312-6421331 Msa1137570:CDS 35.0%
!! TAGAAAAGGGTATCGTATGT+GGG - chr7_4:6421313-6421332 Msa1137570:CDS 35.0%
CATATGTGTGACTTCATAAG+TGG - chr7_4:6421586-6421605 Msa1137570:intron 35.0%
!!! TGCTGTCCTTTTTTATGTGT+TGG - chr7_4:6421738-6421757 Msa1137570:intron 35.0%
! GTTGGATTTTCAATGACAAC+AGG - chr7_4:6421756-6421775 Msa1137570:intron 35.0%
AGACGAGTTAATTCAAACAG+AGG - chr7_4:6421983-6422002 Msa1137570:intron 35.0%
! CTTCATTTGAAATTCCCTTC+AGG + chr7_4:6422064-6422083 None:intergenic 35.0%
GGGAATTTCAAATGAAGTGT+TGG - chr7_4:6422067-6422086 Msa1137570:CDS 35.0%
CAAGCTTTCTCAGTTCAATT+TGG - chr7_4:6422097-6422116 Msa1137570:CDS 35.0%
CTTTCTCAGTTCAATTTGGT+TGG - chr7_4:6422101-6422120 Msa1137570:CDS 35.0%
ACAGCTGAAGCAGTTAATTT+AGG - chr7_4:6422221-6422240 Msa1137570:CDS 35.0%
AATACCGGTGATGTTGATGT+TGG - chr7_4:6420778-6420797 Msa1137570:intron 40.0%
!! GTTGGAGGTGTTTCAGATAA+TGG - chr7_4:6420796-6420815 Msa1137570:intron 40.0%
! AACTTTGGAAGGTGAGTTAG+AGG - chr7_4:6420903-6420922 Msa1137570:intron 40.0%
! ACTTTGGAAGGTGAGTTAGA+GGG - chr7_4:6420904-6420923 Msa1137570:intron 40.0%
!! GGTTCTGAGGTTAGAGATTT+GGG - chr7_4:6421006-6421025 Msa1137570:CDS 40.0%
ACACTTCATGCTGAGATTTC+TGG - chr7_4:6421042-6421061 Msa1137570:CDS 40.0%
!! AGAAAAGGGTATCGTATGTG+GGG - chr7_4:6421314-6421333 Msa1137570:CDS 40.0%
! AGAGTCTAGACTTTTCACAC+TGG + chr7_4:6421548-6421567 None:intergenic 40.0%
ACAACAGGGAATGTTGAAGA+CGG - chr7_4:6421771-6421790 Msa1137570:intron 40.0%
TCGAAGTTTGATCATCCTCT+TGG + chr7_4:6421806-6421825 None:intergenic 40.0%
GAGGATGCTTGAGAAATCTT+TGG - chr7_4:6421878-6421897 Msa1137570:intron 40.0%
AGGAAGAAGCAATCGAAGTT+TGG - chr7_4:6422003-6422022 Msa1137570:intron 40.0%
GGAAGAAGCAATCGAAGTTT+GGG - chr7_4:6422004-6422023 Msa1137570:intron 40.0%
AGTTTGGGAAAGATTGTTCG+AGG - chr7_4:6422019-6422038 Msa1137570:intron 40.0%
TTCCAGCTTATCTCTAAGCT+CGG + chr7_4:6422144-6422163 None:intergenic 40.0%
ACAAGAAACTGAATGCCAGT+TGG - chr7_4:6422274-6422293 Msa1137570:CDS 40.0%
AGACTTTCACATTCACCAAC+TGG + chr7_4:6422292-6422311 None:intergenic 40.0%
AATACCGGTGATGTTGATGT+TGG - chr7_4:6420778-6420797 Msa1137570:intron 40.0%
!! GTTGGAGGTGTTTCAGATAA+TGG - chr7_4:6420796-6420815 Msa1137570:intron 40.0%
! AACTTTGGAAGGTGAGTTAG+AGG - chr7_4:6420903-6420922 Msa1137570:intron 40.0%
! ACTTTGGAAGGTGAGTTAGA+GGG - chr7_4:6420904-6420923 Msa1137570:intron 40.0%
!! GGTTCTGAGGTTAGAGATTT+GGG - chr7_4:6421006-6421025 Msa1137570:CDS 40.0%
ACACTTCATGCTGAGATTTC+TGG - chr7_4:6421042-6421061 Msa1137570:CDS 40.0%
!! AGAAAAGGGTATCGTATGTG+GGG - chr7_4:6421314-6421333 Msa1137570:CDS 40.0%
! AGAGTCTAGACTTTTCACAC+TGG + chr7_4:6421548-6421567 None:intergenic 40.0%
ACAACAGGGAATGTTGAAGA+CGG - chr7_4:6421771-6421790 Msa1137570:intron 40.0%
TCGAAGTTTGATCATCCTCT+TGG + chr7_4:6421806-6421825 None:intergenic 40.0%
GAGGATGCTTGAGAAATCTT+TGG - chr7_4:6421878-6421897 Msa1137570:intron 40.0%
AGGAAGAAGCAATCGAAGTT+TGG - chr7_4:6422003-6422022 Msa1137570:intron 40.0%
GGAAGAAGCAATCGAAGTTT+GGG - chr7_4:6422004-6422023 Msa1137570:intron 40.0%
AGTTTGGGAAAGATTGTTCG+AGG - chr7_4:6422019-6422038 Msa1137570:intron 40.0%
TTCCAGCTTATCTCTAAGCT+CGG + chr7_4:6422144-6422163 None:intergenic 40.0%
ACAAGAAACTGAATGCCAGT+TGG - chr7_4:6422274-6422293 Msa1137570:CDS 40.0%
AGACTTTCACATTCACCAAC+TGG + chr7_4:6422292-6422311 None:intergenic 40.0%
ACCTCCAACATCAACATCAC+CGG + chr7_4:6420785-6420804 None:intergenic 45.0%
!! TGATTTGTTATGTGGGGTGC+TGG - chr7_4:6420984-6421003 Msa1137570:CDS 45.0%
!! GATTTGTTATGTGGGGTGCT+GGG - chr7_4:6420985-6421004 Msa1137570:CDS 45.0%
!! GGGTTCTGAGGTTAGAGATT+TGG - chr7_4:6421005-6421024 Msa1137570:CDS 45.0%
CTTTGAACGATTGGCAAGAG+AGG - chr7_4:6421085-6421104 Msa1137570:CDS 45.0%
ATCCGAGCTTAGAGATAAGC+TGG - chr7_4:6422139-6422158 Msa1137570:CDS 45.0%
ACCTCCAACATCAACATCAC+CGG + chr7_4:6420785-6420804 None:intergenic 45.0%
!! TGATTTGTTATGTGGGGTGC+TGG - chr7_4:6420984-6421003 Msa1137570:CDS 45.0%
!! GATTTGTTATGTGGGGTGCT+GGG - chr7_4:6420985-6421004 Msa1137570:CDS 45.0%
!! GGGTTCTGAGGTTAGAGATT+TGG - chr7_4:6421005-6421024 Msa1137570:CDS 45.0%
CTTTGAACGATTGGCAAGAG+AGG - chr7_4:6421085-6421104 Msa1137570:CDS 45.0%
ATCCGAGCTTAGAGATAAGC+TGG - chr7_4:6422139-6422158 Msa1137570:CDS 45.0%
ACCGGTGATGTTGATGTTGG+AGG - chr7_4:6420781-6420800 Msa1137570:intron 50.0%
GAACGATTGGCAAGAGAGGT+TGG - chr7_4:6421089-6421108 Msa1137570:CDS 50.0%
! AGAGAGGTTGGTTGAATCCG+AGG - chr7_4:6421101-6421120 Msa1137570:CDS 50.0%
ACAGGGAATGTTGAAGACGG+TGG - chr7_4:6421774-6421793 Msa1137570:intron 50.0%
AGACGGTGGAAATGTCCAAG+AGG - chr7_4:6421788-6421807 Msa1137570:intron 50.0%
AATGCGCGTGAGATCCTGAA+GGG - chr7_4:6422047-6422066 Msa1137570:intron 50.0%
ACCGGTGATGTTGATGTTGG+AGG - chr7_4:6420781-6420800 Msa1137570:intron 50.0%
GAACGATTGGCAAGAGAGGT+TGG - chr7_4:6421089-6421108 Msa1137570:CDS 50.0%
! AGAGAGGTTGGTTGAATCCG+AGG - chr7_4:6421101-6421120 Msa1137570:CDS 50.0%
ACAGGGAATGTTGAAGACGG+TGG - chr7_4:6421774-6421793 Msa1137570:intron 50.0%
AGACGGTGGAAATGTCCAAG+AGG - chr7_4:6421788-6421807 Msa1137570:intron 50.0%
AATGCGCGTGAGATCCTGAA+GGG - chr7_4:6422047-6422066 Msa1137570:intron 50.0%
CAATGCGCGTGAGATCCTGA+AGG - chr7_4:6422046-6422065 Msa1137570:intron 55.0%
CAATGCGCGTGAGATCCTGA+AGG - chr7_4:6422046-6422065 Msa1137570:intron 55.0%
!! ATGTGGGGTGCTGGGTTCTG+AGG - chr7_4:6420993-6421012 Msa1137570:CDS 60.0%
!! ATGTGGGGTGCTGGGTTCTG+AGG - chr7_4:6420993-6421012 Msa1137570:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 6420720 6422526 6420720 ID=Msa1137570;Name=Msa1137570
chr7_4 mRNA 6420720 6422526 6420720 ID=Msa1137570-mRNA-1;Parent=Msa1137570;Name=Msa1137570-mRNA-1;_AED=0.03;_eAED=0.03;_QI=22|0.5|0.33|0.66|1|1|3|0|335
chr7_4 exon 6420720 6420752 6420720 ID=Msa1137570-mRNA-1:exon:1770;Parent=Msa1137570-mRNA-1
chr7_4 exon 6420951 6421468 6420951 ID=Msa1137570-mRNA-1:exon:1769;Parent=Msa1137570-mRNA-1
chr7_4 exon 6422048 6422526 6422048 ID=Msa1137570-mRNA-1:exon:1768;Parent=Msa1137570-mRNA-1
chr7_4 five_prime_UTR 6422505 6422526 6422505 ID=Msa1137570-mRNA-1:five_prime_utr;Parent=Msa1137570-mRNA-1
chr7_4 CDS 6422048 6422504 6422048 ID=Msa1137570-mRNA-1:cds;Parent=Msa1137570-mRNA-1
chr7_4 CDS 6420951 6421468 6420951 ID=Msa1137570-mRNA-1:cds;Parent=Msa1137570-mRNA-1
chr7_4 CDS 6420720 6420752 6420720 ID=Msa1137570-mRNA-1:cds;Parent=Msa1137570-mRNA-1
Gene Sequence

>Msa1137570

ATGATTAGAACAATGGAAACTCAAAGTGTTGAAGATAATACCGGTGATGTTGATGTTGGAGGTGTTTCAGATAATGGAGAAGTTATTGTGGATTTTGAAATGAGTGTGGTATATTTCTCTGAGAAAGTTTCAAATTTGAGTATTTTTATGATGAATTTGGAAACTTTGGAAGGTGAGTTAGAGGGTTTAGTTTGTGATGAAGAAAACATCGATATGGATTGTGTTTTAAAGGGTTTTGAGTTTGATTTGTTATGTGGGGTGCTGGGTTCTGAGGTTAGAGATTTGGGTTTGTTTTTGGATACACTTCATGCTGAGATTTCTGGTGCTAGAGAGAGAGATTCTTCTTTGAACGATTGGCAAGAGAGGTTGGTTGAATCCGAGGAGCAGTTTTATGAGATTAAGAAACAATCTTTTAGTTTTGAAAGGACTTTGTCTTCTTATAAGAAGGAAGAGAATGGGAATGTTGAAGACGGTGGAAATGTCCAAGAGGATGATCAAACTTCGAATGTAAACAACATGATGAACATGCAAACGACTGAGCAACATAGAAACATTTTGAGGATGCTTGAGAAATCTTTGGCAAATGAAATAGATCTCGAGAAGAATTTCAACGACTCGAAGAAAATTGAAGAAAAGCTAAATCTGAGGATCCTTTCTTTAGAAGACGAGTTAATTCAAACAGAGGAAGAAGCAATCGAAGTTTGGGAAAGATTGTTCGAGGCAGACAATGCGCGTGAGATCCTGAAGGGAATTTCAAATGAAGTGTTGGCTAAACTCAAGCTTTCTCAGTTCAATTTGGTTGGTTTAAGAAAAAGTGAATCCGAGCTTAGAGATAAGCTGGAAACTTCTATAGAGCAATTGAAAAAAAGAGACGTTAATTTGGAAAAGATCGAAAGCAGCACAGCTGAAGCAGTTAATTTAGGCGACAAAGTGTGCTCACTTGAGAAGCAGCTACAAGAAACTGAATGCCAGTTGCAATTTGGGGTGTTACAACTCTCCTTCACTTAA

Protein sequence

>Msa1137570

MIRTMETQSVEDNTGDVDVGGVSDNGEVIVDFEMSVVYFSEKVSNLSIFMMNLETLEGELEGLVCDEENIDMDCVLKGFEFDLLCGVLGSEVRDLGLFLDTLHAEISGARERDSSLNDWQERLVESEEQFYEIKKQSFSFERTLSSYKKEENGNVEDGGNVQEDDQTSNVNNMMNMQTTEQHRNILRMLEKSLANEIDLEKNFNDSKKIEEKLNLRILSLEDELIQTEEEAIEVWERLFEADNAREILKGISNEVLAKLKLSQFNLVGLRKSESELRDKLETSIEQLKKRDVNLEKIESSTAEAVNLGDKVCSLEKQLQETECQLQFGVLQLSFT*