AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0061340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0061340 MtrunA17_Chr1g0161371 99.499 599 3 0 1 599 1 599 0.0 1202
Msa0061340 MtrunA17_Chr8g0344311 87.603 605 66 4 1 599 1 602 0.0 993
Msa0061340 MtrunA17_Chr8g0391771 82.781 604 99 2 1 599 1 604 0.0 981
Msa0061340 MtrunA17_Chr2g0290411 48.073 545 257 8 52 582 13 545 2.97e-146 434
Msa0061340 MtrunA17_Chr4g0076251 48.785 535 249 6 51 568 25 551 5.71e-146 434
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0061340 AT1G68060.1 75.327 612 124 9 1 592 1 605 0.0 889
Msa0061340 AT1G24764.1 74.038 624 134 8 1 599 1 621 0.0 885
Msa0061340 AT1G24764.3 74.038 624 134 8 1 599 60 680 0.0 882
Msa0061340 AT1G14840.1 72.910 598 145 9 9 599 5 592 0.0 818
Msa0061340 AT2G01750.1 74.490 588 134 9 21 599 37 617 0.0 815
Msa0061340 AT2G01750.2 74.446 587 134 9 21 598 37 616 0.0 814
Msa0061340 AT1G14840.2 70.569 598 144 10 9 599 5 577 0.0 775
Msa0061340 AT1G24764.2 78.981 471 93 4 132 599 1 468 0.0 741
Msa0061340 AT4G17220.1 47.297 518 233 9 52 566 6 486 2.25e-136 407

Find 148 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAGAGGCGGATGATAAT+TGG 0.234084 1_2:-19405750 Msa0061340:CDS
TGGTTCTGAGCACTGTTTAC+AGG 0.234770 1_2:+19405307 None:intergenic
CGAAGCAATTCTTGCTCCTT+TGG 0.241876 1_2:-19407217 Msa0061340:CDS
CTTTGGTTTCTTCGAGAGAT+TGG 0.277319 1_2:+19405773 None:intergenic
TTCAAGTAGTGCAGCTTCTT+TGG 0.279011 1_2:+19406994 None:intergenic
TTCTAGCTCCCTCACAGTTT+GGG 0.281893 1_2:+19406708 None:intergenic
GCTCAGAACCAGCTAATTTC+TGG 0.284801 1_2:-19405295 Msa0061340:CDS
TGCCTCAACTTCCATGGCTT+TGG 0.286023 1_2:+19405435 None:intergenic
CTTCTAGCTCCCTCACAGTT+TGG 0.287805 1_2:+19406707 None:intergenic
ATCATCCGCCTCTCTCTCTT+TGG 0.291625 1_2:+19405756 None:intergenic
ATCTCAAAATTAACCTCTAA+TGG 0.292039 1_2:-19405961 Msa0061340:CDS
AGATAAGGATAGAGAATTAT+TGG 0.309494 1_2:-19410395 Msa0061340:CDS
TACCCTGTTTGCTGTTACCT+TGG 0.315274 1_2:+19406485 None:intergenic
TCTCTAAACGATCCAGAAAA+TGG 0.341450 1_2:+19410644 None:intergenic
TAGTGCAGCTTCTTTGGATT+TGG 0.342185 1_2:+19407000 None:intergenic
CTGAGTGATTGTGACTTGTT+TGG 0.344504 1_2:+19411022 None:intergenic
CTTGGGCAAGAATCCATTAG+AGG 0.344932 1_2:+19405948 None:intergenic
GATAATTGGAAAGGAAATTC+AGG 0.351491 1_2:-19405736 Msa0061340:CDS
AAAGCGGTTCAGCAATATAA+AGG 0.353628 1_2:-19405332 Msa0061340:CDS
TCAATATTGAGCTAGATGAT+AGG 0.359640 1_2:+19405896 None:intergenic
TTGAGGGGATGGTGTTCTCT+TGG 0.362478 1_2:+19405930 None:intergenic
ATCATCCACCATGGAGGCCT+TGG 0.362971 1_2:+19406943 None:intergenic
CTAGAAGAGTCAGTCCTTGC+AGG 0.368346 1_2:-19406691 Msa0061340:CDS
TTCTGCTAGACAGCAGAGTA+TGG 0.375230 1_2:-19410594 Msa0061340:CDS
CAGTGAAAGTGGAGCTTAAT+CGG 0.377411 1_2:-19410532 Msa0061340:CDS
TCAGGAAGAAAACAAAATCT+TGG 0.381761 1_2:-19406773 Msa0061340:intron
TGAAGAACGACGATTCTTGC+AGG 0.385019 1_2:-19406397 Msa0061340:intron
CATGAATTTGTTGCACGGTT+CGG 0.387547 1_2:-19410558 Msa0061340:CDS
TGAGGGGATGGTGTTCTCTT+GGG 0.390280 1_2:+19405931 None:intergenic
TCTGCCGGTGGGAAGTCATT+TGG 0.398268 1_2:+19405706 None:intergenic
CTTCTTTGCCTCAACTTCCA+TGG 0.400320 1_2:+19405429 None:intergenic
TGAGTGATTGTGACTTGTTT+GGG 0.421702 1_2:+19411023 None:intergenic
GTGCCAAGGTAACAGCAAAC+AGG 0.425792 1_2:-19406488 Msa0061340:CDS
GAAGAGCTGTCAAAGGTTGA+TGG 0.434615 1_2:-19407483 Msa0061340:CDS
TGCCTTGGCCAAGGCCTCCA+TGG 0.436711 1_2:-19406951 Msa0061340:CDS
ACGGCGATGGAGGAGATTTA+CGG 0.436994 1_2:-19410695 Msa0061340:exon
TCTTCAAGCCATTGTTTGAC+AGG 0.443112 1_2:+19406414 None:intergenic
AGCAATTCTTGCTCCTTTGG+AGG 0.447816 1_2:-19407214 Msa0061340:CDS
TCAATTGCGGCTCAAAGTGC+TGG 0.456627 1_2:-19406091 Msa0061340:CDS
ATATGACCTCTTGCAGAAAG+AGG 0.460005 1_2:-19405656 Msa0061340:CDS
TGTTCAGTTTGCCTTGGCCA+AGG 0.461756 1_2:-19406960 Msa0061340:CDS
TATCAACTCCACCTAGTGAT+TGG 0.463068 1_2:+19405986 None:intergenic
CGGAGGAGCGGTGGCGACTC+CGG 0.465713 1_2:-19410669 Msa0061340:CDS
TTTACCTTCCAGAAATTAGC+TGG 0.469895 1_2:+19405287 None:intergenic
CGATTAAGCTCCACTTTCAC+TGG 0.472787 1_2:+19410533 None:intergenic
TTGAGGCAAAGAAGATGAGA+AGG 0.474623 1_2:-19405420 Msa0061340:CDS
AAGTGCTGGAGGAGAGTTTG+AGG 0.474656 1_2:-19406077 Msa0061340:CDS
AAAACACTTAATAGAGAGTT+GGG 0.481831 1_2:-19406513 Msa0061340:CDS
TGATGGGAAGCTAAAATTAA+CGG 0.487466 1_2:-19407466 Msa0061340:CDS
ATAGGGATGACCTGAGTTGA+GGG 0.487512 1_2:+19405914 None:intergenic
AAAGACTGTTCAGTTTGCCT+TGG 0.487825 1_2:-19406966 Msa0061340:CDS
GGTTCTGAGCACTGTTTACA+GGG 0.494170 1_2:+19405308 None:intergenic
CTGTCAGATGTTAGCAAGGA+AGG 0.496607 1_2:-19405470 Msa0061340:intron
CACCATGGAGGCCTTGGCCA+AGG 0.496680 1_2:+19406949 None:intergenic
TGATGAAAAGAAAGCATCAA+TGG 0.497269 1_2:-19407313 Msa0061340:CDS
CTGTTGTGGTTGCAAATGAA+TGG 0.501031 1_2:-19406461 Msa0061340:CDS
GTCGTTGCCTTGAGGAAAGC+TGG 0.505078 1_2:-19405634 Msa0061340:CDS
GGAAGTAGCTTCCATGGAAA+AGG 0.509920 1_2:-19405398 Msa0061340:CDS
CAATATTGAGCTAGATGATA+GGG 0.513491 1_2:+19405897 None:intergenic
AAACTAAACACTAACCTCAA+TGG 0.514146 1_2:+19405573 None:intergenic
TCAATATTGAGGAGTGCTAA+AGG 0.517695 1_2:-19405883 Msa0061340:CDS
TGAGGCAAAGAAGATGAGAA+GGG 0.522446 1_2:-19405419 Msa0061340:CDS
TGATGGTGGCTCAAGGACAC+TGG 0.523950 1_2:-19405845 Msa0061340:CDS
GACACTGGAAAGAAGTAAAA+CGG 0.525209 1_2:-19405830 Msa0061340:CDS
AAGCGGTTCAGCAATATAAA+GGG 0.526321 1_2:-19405331 Msa0061340:CDS
GAGAAGGGAAGTAGCTTCCA+TGG 0.527885 1_2:-19405404 Msa0061340:CDS
TCTTCTCGTCGCCAATCACT+AGG 0.528739 1_2:-19405997 Msa0061340:CDS
GAATTTGAATGCGCGAGTGA+GGG 0.529120 1_2:-19410733 Msa0061340:five_prime_UTR
AGCAAACAGGGTAGCTGTTG+TGG 0.529953 1_2:-19406475 Msa0061340:CDS
CGGTTCGGATCCAGTGAAAG+TGG 0.533833 1_2:-19410543 Msa0061340:CDS
GAGGGTCCATGCTGCTCAGA+AGG 0.534386 1_2:-19407259 Msa0061340:CDS
GGACAGAATGCATAGACAAA+AGG 0.539722 1_2:-19406752 Msa0061340:CDS
TATCATCTAGCTCAATATTG+AGG 0.541720 1_2:-19405894 Msa0061340:CDS
GAAACAGATTGAGATTTGCC+AGG 0.542161 1_2:-19406894 Msa0061340:intron
TTGCAGCAGAAGCTACTCTT+CGG 0.548174 1_2:-19407281 Msa0061340:CDS
TTGCTGCTGCACCACCTGCA+AGG 0.548940 1_2:+19406677 None:intergenic
TCGTTTCAGATCGACGGCGA+TGG 0.553339 1_2:-19410708 Msa0061340:exon
TGGTTGAATGAGTAACTTTG+AGG 0.553498 1_2:+19405793 None:intergenic
AAGAGCTGTCAAAGGTTGAT+GGG 0.554635 1_2:-19407482 Msa0061340:CDS
AACGATCCAGAAAATGGTGC+CGG 0.555391 1_2:+19410650 None:intergenic
AGATAAAGATGATGCCATTG+AGG 0.555603 1_2:-19405587 Msa0061340:intron
AGTAGTCGCAGCACCGCAGA+GGG 0.555775 1_2:-19406039 Msa0061340:CDS
TGTTTGCTGTTACCTTGGCA+CGG 0.558804 1_2:+19406490 None:intergenic
AGCTTTAGTTCAGCCTCCAA+AGG 0.559013 1_2:+19407201 None:intergenic
AGGCTGAACTAAAGCTTGCT+CGG 0.559493 1_2:-19407194 Msa0061340:CDS
GCATAGACAAAAGGTGGCAG+AGG 0.560586 1_2:-19406743 Msa0061340:CDS
AAGAAGTAAAACGGTGCTGA+GGG 0.563039 1_2:-19405821 Msa0061340:CDS
AGGGTTTCGTTTCAGATCGA+CGG 0.563160 1_2:-19410714 Msa0061340:five_prime_UTR
GATAGGGATGACCTGAGTTG+AGG 0.563988 1_2:+19405913 None:intergenic
GCTGTCTGAAGAGCTGTCAA+AGG 0.567280 1_2:-19407490 Msa0061340:CDS
TAGAGAGTTGGGCCGTGCCA+AGG 0.567676 1_2:-19406502 Msa0061340:CDS
ATACTATCCTCTGTATCTGC+CGG 0.568717 1_2:+19405691 None:intergenic
GGAGCAAGAATTGCTTCGAT+CGG 0.572832 1_2:+19407222 None:intergenic
CGAAGAAACCAAAGAGAGAG+AGG 0.576139 1_2:-19405764 Msa0061340:CDS
AGAATTTGAATGCGCGAGTG+AGG 0.579102 1_2:-19410734 Msa0061340:five_prime_UTR
GAACACCATCCCCTCAACTC+AGG 0.581720 1_2:-19405924 Msa0061340:CDS
AGTGCTGGAGGAGAGTTTGA+GGG 0.584451 1_2:-19406076 Msa0061340:CDS
CAGCAGAAGCTACTCTTCGG+AGG 0.586254 1_2:-19407278 Msa0061340:CDS
GACCAAAGCCATGGAAGTTG+AGG 0.587168 1_2:-19405437 Msa0061340:CDS
CGGCTTGAGAATGAAGTTCG+AGG 0.589218 1_2:-19410512 Msa0061340:intron
GCAAGAATTGCTTCGATCGG+AGG 0.593352 1_2:+19407225 None:intergenic
TTCATGACCAGCTTTCCTCA+AGG 0.597013 1_2:+19405627 None:intergenic
CAACGACCTCTTTCTGCAAG+AGG 0.600338 1_2:+19405650 None:intergenic
CTATCCTCTGTATCTGCCGG+TGG 0.602400 1_2:+19405694 None:intergenic
CAGTAGTCGCAGCACCGCAG+AGG 0.603621 1_2:-19406040 Msa0061340:CDS
CATCATCCTTCTGAGCAGCA+TGG 0.604557 1_2:+19407253 None:intergenic
TTTCAGATCGACGGCGATGG+AGG 0.606162 1_2:-19410705 Msa0061340:exon
GTTCATACTTCTTCCCTCTG+CGG 0.608964 1_2:+19406026 None:intergenic
GATGACCTGAGTTGAGGGGA+TGG 0.611124 1_2:+19405919 None:intergenic
AAGCGTTGAGGCATTCTGAA+CGG 0.613362 1_2:-19410354 Msa0061340:CDS
CAGAATGCATAGACAAAAGG+TGG 0.613852 1_2:-19406749 Msa0061340:CDS
CTTCCCACCGGCAGATACAG+AGG 0.614204 1_2:-19405698 Msa0061340:CDS
CTTGGCCAAGGCCTCCATGG+TGG 0.617740 1_2:-19406948 Msa0061340:CDS
AAGAGGTCATATAAAACACT+TGG 0.618174 1_2:+19405667 None:intergenic
AGCAGAAGCTACTCTTCGGA+GGG 0.619468 1_2:-19407277 Msa0061340:CDS
ACTAAAGCTTGCTCGGCAAG+AGG 0.620295 1_2:-19407187 Msa0061340:intron
AAAGAAGTAAAACGGTGCTG+AGG 0.622180 1_2:-19405822 Msa0061340:CDS
TTACGGCGACGGAGGAGCGG+TGG 0.622998 1_2:-19410678 Msa0061340:CDS
AAGTCATGCCTGTCAAACAA+TGG 0.623263 1_2:-19406422 Msa0061340:CDS
GAGGCGGATGATAATTGGAA+AGG 0.624926 1_2:-19405745 Msa0061340:CDS
AGATACGTTGACCAAAGCCA+TGG 0.625101 1_2:-19405446 Msa0061340:CDS
AGAAAGAGGTCGTTGCCTTG+AGG 0.625269 1_2:-19405642 Msa0061340:CDS
GAGGAGATTTACGGCGACGG+AGG 0.631996 1_2:-19410686 Msa0061340:CDS
GTGCTGGAGGAGAGTTTGAG+GGG 0.632505 1_2:-19406075 Msa0061340:CDS
TTATCTGTCAGATGTTAGCA+AGG 0.633097 1_2:-19405474 Msa0061340:intron
AAAGCTCACCCAAACTGTGA+GGG 0.633154 1_2:-19406716 Msa0061340:CDS
GAGTTCATGAATTTGTTGCA+CGG 0.637392 1_2:-19410563 Msa0061340:CDS
AGTAGCTTCCATGGAAAAGG+AGG 0.639443 1_2:-19405395 Msa0061340:CDS
AGAACCAGCTAATTTCTGGA+AGG 0.641246 1_2:-19405291 Msa0061340:CDS
TGCCAAGGTAACAGCAAACA+GGG 0.644482 1_2:-19406487 Msa0061340:CDS
GATTTACGGCGACGGAGGAG+CGG 0.644818 1_2:-19410681 Msa0061340:CDS
ATGCAGTTAGAGATTATCAA+CGG 0.649753 1_2:-19406654 Msa0061340:CDS
TATCCTCTGTATCTGCCGGT+GGG 0.651445 1_2:+19405695 None:intergenic
GAAGAGTCAGTCCTTGCAGG+TGG 0.658177 1_2:-19406688 Msa0061340:CDS
AAAAGCTCACCCAAACTGTG+AGG 0.659214 1_2:-19406717 Msa0061340:CDS
ATGGAGGAGATTTACGGCGA+CGG 0.663204 1_2:-19410689 Msa0061340:CDS
AAGCTGAGATTAAAGCGTTG+AGG 0.667550 1_2:-19410366 Msa0061340:CDS
TAAGCCAAATGACTTCCCAC+CGG 0.676407 1_2:-19405710 Msa0061340:CDS
AGTTTGAGGGGAAATTCTAG+CGG 0.678639 1_2:-19406063 Msa0061340:CDS
TCTCGTCGCCAATCACTAGG+TGG 0.679433 1_2:-19405994 Msa0061340:CDS
AGAAACCAAAGAGAGAGAGG+CGG 0.681897 1_2:-19405761 Msa0061340:CDS
TTGGAGATCATCCACCATGG+AGG 0.683506 1_2:+19406937 None:intergenic
AGAACTTCGTCGAGAAGACG+CGG 0.686070 1_2:-19410617 Msa0061340:CDS
GAGGGAAGAAGTATGAACAA+TGG 0.689751 1_2:-19406021 Msa0061340:CDS
ATTGCGGCTCAAAGTGCTGG+AGG 0.694049 1_2:-19406088 Msa0061340:CDS
TACAAGAGAACAGAGCAAAG+CGG 0.698034 1_2:-19405348 Msa0061340:CDS
AGAAGTAAAACGGTGCTGAG+GGG 0.712185 1_2:-19405820 Msa0061340:CDS
TAGGGATGACCTGAGTTGAG+GGG 0.734547 1_2:+19405915 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAACATAATAAACAAA+TGG + chr1_2:19406250-19406269 None:intergenic 10.0%
!!! TATTATGTTTTTTTTTTTTG+GGG - chr1_2:19406256-19406275 Msa0061340:CDS 10.0%
!!! ATTATAACATTAATTTTACA+TGG - chr1_2:19409743-19409762 Msa0061340:intron 10.0%
!!! ATTATGTTTTTTTTTTTTGG+GGG - chr1_2:19406257-19406276 Msa0061340:CDS 15.0%
!!! ATATTTTTAATTAGTGCTAT+TGG - chr1_2:19406981-19407000 Msa0061340:CDS 15.0%
!!! TTCTCAATTGTTGTTATTTT+TGG - chr1_2:19406012-19406031 Msa0061340:CDS 20.0%
!! TTGTTACTATCTATGATATA+TGG - chr1_2:19406067-19406086 Msa0061340:CDS 20.0%
!!! TCTTTTAGCATATCAAATAT+CGG + chr1_2:19406898-19406917 None:intergenic 20.0%
!!! AATCGTGTTATTCTTATTAA+AGG - chr1_2:19407147-19407166 Msa0061340:intron 20.0%
!!! ATCGTGTTATTCTTATTAAA+GGG - chr1_2:19407148-19407167 Msa0061340:intron 20.0%
!! AAAAAATATTTCCCCATAAT+AGG - chr1_2:19407465-19407484 Msa0061340:CDS 20.0%
!! CAACACAACATTTAATATTT+GGG + chr1_2:19407946-19407965 None:intergenic 20.0%
!! TCAACACAACATTTAATATT+TGG + chr1_2:19407947-19407966 None:intergenic 20.0%
!! TAATTACTGAAGTTGAATTA+GGG + chr1_2:19408900-19408919 None:intergenic 20.0%
!! ATAATTACTGAAGTTGAATT+AGG + chr1_2:19408901-19408920 None:intergenic 20.0%
!! AATATAAACTCAAAAGAACA+AGG + chr1_2:19409151-19409170 None:intergenic 20.0%
!! TTATAATCAATAAAGCAACT+GGG + chr1_2:19409730-19409749 None:intergenic 20.0%
!!! ACTAGTTCTGAAATTATTTA+AGG - chr1_2:19410160-19410179 Msa0061340:intron 20.0%
!!! TGTTTGTTTTTGTGTAGATA+AGG - chr1_2:19405897-19405916 Msa0061340:CDS 25.0%
! AGATAAGGATAGAGAATTAT+TGG - chr1_2:19405912-19405931 Msa0061340:CDS 25.0%
! TAATCGCTAATTTACATGTT+GGG - chr1_2:19406479-19406498 Msa0061340:CDS 25.0%
!!! CATTTGTTTGTTTTAAGTGA+GGG - chr1_2:19406630-19406649 Msa0061340:intron 25.0%
! AAATTGCACAAAAATGTGAA+AGG + chr1_2:19406717-19406736 None:intergenic 25.0%
! GAAACTGTCTCATATAAATT+TGG - chr1_2:19406766-19406785 Msa0061340:CDS 25.0%
! AAATAATGCTTCATAGGATT+TGG + chr1_2:19407079-19407098 None:intergenic 25.0%
! AAGTCTAAATAATGCTTCAT+AGG + chr1_2:19407085-19407104 None:intergenic 25.0%
! AATCTCAAGACTTGATTTAT+AGG + chr1_2:19407288-19407307 None:intergenic 25.0%
!!! TTCAACTGTTTTATTGTTAG+AGG - chr1_2:19407306-19407325 Msa0061340:CDS 25.0%
! AGGAAAAAAAATGGAAAGTT+AGG - chr1_2:19407618-19407637 Msa0061340:intron 25.0%
!! AAATGAAAAGCTTTGATATG+TGG - chr1_2:19407865-19407884 Msa0061340:intron 25.0%
!! AGTAAATTTTTCTTCTAAGC+TGG + chr1_2:19407906-19407925 None:intergenic 25.0%
!!! ATTTGGGTTGTATTATAGTT+TGG + chr1_2:19407930-19407949 None:intergenic 25.0%
! TGAATCATTGAAGTGAAAAT+TGG - chr1_2:19408032-19408051 Msa0061340:intron 25.0%
! GAATCATTGAAGTGAAAATT+GGG - chr1_2:19408033-19408052 Msa0061340:intron 25.0%
!!! AAAAGATGAGAGTTTTGTAT+TGG - chr1_2:19408074-19408093 Msa0061340:intron 25.0%
!!! AAAGATGAGAGTTTTGTATT+GGG - chr1_2:19408075-19408094 Msa0061340:intron 25.0%
! TCTAATCTCTCCTAATTATT+TGG + chr1_2:19408205-19408224 None:intergenic 25.0%
! CTATCATTGAATTTGATTCA+TGG - chr1_2:19408235-19408254 Msa0061340:intron 25.0%
!!! TGTTTTCAAGAAGACTTAAA+TGG - chr1_2:19408376-19408395 Msa0061340:intron 25.0%
!!! TAGTTTTTGAGAAGATAGTA+AGG - chr1_2:19408407-19408426 Msa0061340:intron 25.0%
! ACTCCTAATCCTAAATAAAT+AGG - chr1_2:19408462-19408481 Msa0061340:intron 25.0%
! CTCCTAATCCTAAATAAATA+GGG - chr1_2:19408463-19408482 Msa0061340:intron 25.0%
!! TTCCCTATTTATTTAGGATT+AGG + chr1_2:19408468-19408487 None:intergenic 25.0%
! AAAGGTCAATGTCAAATAAA+CGG + chr1_2:19408671-19408690 None:intergenic 25.0%
! ACATGAAATGTAACTTATCT+TGG - chr1_2:19408774-19408793 Msa0061340:intron 25.0%
! CAGTAATTATTTGTGTTCTT+AGG - chr1_2:19408911-19408930 Msa0061340:intron 25.0%
! TAATTATTTGTGTTCTTAGG+TGG - chr1_2:19408914-19408933 Msa0061340:intron 25.0%
! TGAGTTTATATTGCAATACT+TGG - chr1_2:19409159-19409178 Msa0061340:intron 25.0%
!! TGTAATCATGCAACTTTTAA+CGG - chr1_2:19409491-19409510 Msa0061340:intron 25.0%
! GTTATAATCAATAAAGCAAC+TGG + chr1_2:19409731-19409750 None:intergenic 25.0%
! TGGTTTATTTCACATTCTTT+AGG - chr1_2:19409763-19409782 Msa0061340:intron 25.0%
! AAAAACACTTAATAGAGAGT+TGG - chr1_2:19409793-19409812 Msa0061340:intron 25.0%
! AAAACACTTAATAGAGAGTT+GGG - chr1_2:19409794-19409813 Msa0061340:intron 25.0%
! TTATTGAACTGCATTCTTAT+AGG - chr1_2:19410031-19410050 Msa0061340:intron 25.0%
! TATTGAACTGCATTCTTATA+GGG - chr1_2:19410032-19410051 Msa0061340:intron 25.0%
! TTCAGGAAAAATATCAATTG+CGG - chr1_2:19410203-19410222 Msa0061340:intron 25.0%
! ATCTCAAAATTAACCTCTAA+TGG - chr1_2:19410346-19410365 Msa0061340:CDS 25.0%
! CAATTATCAATAAGATGTCA+AGG + chr1_2:19410793-19410812 None:intergenic 25.0%
! TGTTTTCTCTCTCTAGATTA+AGG + chr1_2:19405414-19405433 None:intergenic 30.0%
AATTCAGCTGAAAAACTCTT+CGG + chr1_2:19405840-19405859 None:intergenic 30.0%
!!! TTTTTTTGGGGGAGTTTATT+TGG - chr1_2:19406268-19406287 Msa0061340:intron 30.0%
TAACTTATGTCTGTAAGACT+TGG - chr1_2:19406314-19406333 Msa0061340:intron 30.0%
GTAATCGCTAATTTACATGT+TGG - chr1_2:19406478-19406497 Msa0061340:CDS 30.0%
AGGAATTGAGCTTGTAAATA+TGG - chr1_2:19406513-19406532 Msa0061340:CDS 30.0%
!! GGTACTATTATTTTGTTTCC+TGG - chr1_2:19406534-19406553 Msa0061340:intron 30.0%
!! ACTATTATTTTGTTTCCTGG+TGG - chr1_2:19406537-19406556 Msa0061340:intron 30.0%
!! CTATTATTTTGTTTCCTGGT+GGG - chr1_2:19406538-19406557 Msa0061340:intron 30.0%
CCTCACTTAAAACAAACAAA+TGG + chr1_2:19406632-19406651 None:intergenic 30.0%
!!! CCATTTGTTTGTTTTAAGTG+AGG - chr1_2:19406629-19406648 Msa0061340:intron 30.0%
TATCGATGCAAATGTCAAAA+GGG + chr1_2:19406681-19406700 None:intergenic 30.0%
ACTGAGAAACTTTCCTTATA+TGG + chr1_2:19406846-19406865 None:intergenic 30.0%
GATAATGTCTAACGTAAAGT+TGG + chr1_2:19407110-19407129 None:intergenic 30.0%
!! TGTTGACTTCTTGATACTAT+CGG - chr1_2:19407236-19407255 Msa0061340:CDS 30.0%
GAACCAATACAAAAAGATGA+TGG + chr1_2:19407515-19407534 None:intergenic 30.0%
!!! CATCTTTTTGTATTGGTTCT+CGG - chr1_2:19407516-19407535 Msa0061340:intron 30.0%
AAAAATGGAAAGTTAGGACA+TGG - chr1_2:19407624-19407643 Msa0061340:intron 30.0%
! GAAAATTTAAAGAGAGCGTA+TGG - chr1_2:19407682-19407701 Msa0061340:intron 30.0%
! TCAATTTTCACCTCTAAACT+AGG + chr1_2:19407737-19407756 None:intergenic 30.0%
GTCTCTATCATATGTATAGT+GGG + chr1_2:19407798-19407817 None:intergenic 30.0%
TGTCTCTATCATATGTATAG+TGG + chr1_2:19407799-19407818 None:intergenic 30.0%
TAAACTAGAAGATACAAGCA+AGG - chr1_2:19407829-19407848 Msa0061340:intron 30.0%
AGGAAACTAGCAAATTAGTA+GGG + chr1_2:19408335-19408354 None:intergenic 30.0%
AAGGAAACTAGCAAATTAGT+AGG + chr1_2:19408336-19408355 None:intergenic 30.0%
TCTCATTTACTCAAAGACTA+AGG + chr1_2:19408355-19408374 None:intergenic 30.0%
GTCTTATATCCCTATACATA+GGG + chr1_2:19408444-19408463 None:intergenic 30.0%
! AGTCTTATATCCCTATACAT+AGG + chr1_2:19408445-19408464 None:intergenic 30.0%
CCTGATTTCCCTATTTATTT+AGG + chr1_2:19408474-19408493 None:intergenic 30.0%
CCTAAATAAATAGGGAAATC+AGG - chr1_2:19408471-19408490 Msa0061340:intron 30.0%
AAAAAGTTTACGCATGATAG+AGG + chr1_2:19408696-19408715 None:intergenic 30.0%
TGATGGGAAGCTAAAATTAA+CGG - chr1_2:19408841-19408860 Msa0061340:intron 30.0%
!! TGATGAAAAGAAAGCATCAA+TGG - chr1_2:19408994-19409013 Msa0061340:intron 30.0%
! GGCTTATGACTAATGATTTT+TGG - chr1_2:19409212-19409231 Msa0061340:intron 30.0%
TTGTAGTTTAGCAATCTGTA+GGG + chr1_2:19409259-19409278 None:intergenic 30.0%
!! TCAGCTCTTGATTTTTGTTT+TGG + chr1_2:19409392-19409411 None:intergenic 30.0%
TCAGGAAGAAAACAAAATCT+TGG - chr1_2:19409534-19409553 Msa0061340:intron 30.0%
ATGCAGTTAGAGATTATCAA+CGG - chr1_2:19409653-19409672 Msa0061340:intron 30.0%
ATTTAGGTGAAGACAAAGAA+AGG + chr1_2:19409997-19410016 None:intergenic 30.0%
ATTGAACTGCATTCTTATAG+GGG - chr1_2:19410033-19410052 Msa0061340:intron 30.0%
CACAATTGAAAGTAATGATC+TGG - chr1_2:19410114-19410133 Msa0061340:intron 30.0%
!!! AATTTCAGAACTAGTTTTCG+AGG + chr1_2:19410155-19410174 None:intergenic 30.0%
CAATATTGAGCTAGATGATA+GGG + chr1_2:19410413-19410432 None:intergenic 30.0%
TCAATATTGAGCTAGATGAT+AGG + chr1_2:19410414-19410433 None:intergenic 30.0%
! TATCATCTAGCTCAATATTG+AGG - chr1_2:19410413-19410432 Msa0061340:intron 30.0%
! GGAACATCTAAATCTTTTGA+TGG - chr1_2:19410445-19410464 Msa0061340:intron 30.0%
! ACATCTAAATCTTTTGATGG+TGG - chr1_2:19410448-19410467 Msa0061340:intron 30.0%
GATAATTGGAAAGGAAATTC+AGG - chr1_2:19410571-19410590 Msa0061340:CDS 30.0%
AAGAGGTCATATAAAACACT+TGG + chr1_2:19410643-19410662 None:intergenic 30.0%
! TGGCATCATCTTTATCTTTT+AGG + chr1_2:19410717-19410736 None:intergenic 30.0%
AAACTAAACACTAACCTCAA+TGG + chr1_2:19410737-19410756 None:intergenic 30.0%
!! TGAGTGATTGTGACTTGTTT+GGG + chr1_2:19405287-19405306 None:intergenic 35.0%
TCTCTAAACGATCCAGAAAA+TGG + chr1_2:19405666-19405685 None:intergenic 35.0%
! TTTTCTGGATCGTTTAGAGA+AGG - chr1_2:19405666-19405685 Msa0061340:CDS 35.0%
!! GAGTTCATGAATTTGTTGCA+CGG - chr1_2:19405744-19405763 Msa0061340:CDS 35.0%
TTCAATGTAATCCCATGTGT+CGG - chr1_2:19406147-19406166 Msa0061340:intron 35.0%
!! AATGCTGAGATTTGTTAGGT+TGG - chr1_2:19406356-19406375 Msa0061340:intron 35.0%
!!! GTTAGGTTGGATATTTTTCG+TGG - chr1_2:19406369-19406388 Msa0061340:intron 35.0%
AAAACTCACACACACACAAA+GGG + chr1_2:19406420-19406439 None:intergenic 35.0%
AAAAACTCACACACACACAA+AGG + chr1_2:19406421-19406440 None:intergenic 35.0%
! TTGTGTGTGTGTGAGTTTTT+AGG - chr1_2:19406421-19406440 Msa0061340:CDS 35.0%
GCAACTTCAAAGTTCAAACA+TGG + chr1_2:19406585-19406604 None:intergenic 35.0%
TTGAAGTTGCAGCTGAAAAA+TGG - chr1_2:19406595-19406614 Msa0061340:intron 35.0%
TGAAGTTGCAGCTGAAAAAT+GGG - chr1_2:19406596-19406615 Msa0061340:intron 35.0%
!!! TTGTTTGTTTTAAGTGAGGG+AGG - chr1_2:19406633-19406652 Msa0061340:intron 35.0%
!!! TGTTTGTTTTAAGTGAGGGA+GGG - chr1_2:19406634-19406653 Msa0061340:intron 35.0%
ATCGATGCAAATGTCAAAAG+GGG + chr1_2:19406680-19406699 None:intergenic 35.0%
! GTATCGATGCAAATGTCAAA+AGG + chr1_2:19406682-19406701 None:intergenic 35.0%
!! TGTGTTGACTTGACCATATA+AGG - chr1_2:19406830-19406849 Msa0061340:intron 35.0%
GCATATCAAATATCGGACAA+TGG + chr1_2:19406891-19406910 None:intergenic 35.0%
! AATGCTTCATAGGATTTGGT+TGG + chr1_2:19407075-19407094 None:intergenic 35.0%
AGGGAGGATAAAGGAATAAA+AGG + chr1_2:19407175-19407194 None:intergenic 35.0%
TTTATTCCTTTATCCTCCCT+TGG - chr1_2:19407175-19407194 Msa0061340:intron 35.0%
! TTGCATTCACTCTTAGTTCT+AGG - chr1_2:19407209-19407228 Msa0061340:CDS 35.0%
GTTGTGCTTGTATAGAGAAA+AGG - chr1_2:19407408-19407427 Msa0061340:intron 35.0%
! GAGCCATCATCTTTTTGTAT+TGG - chr1_2:19407509-19407528 Msa0061340:intron 35.0%
GCTAATTGTTCCTATCTAAG+AGG - chr1_2:19407542-19407561 Msa0061340:intron 35.0%
! TGACACAATGAATGCTTTTG+TGG - chr1_2:19407568-19407587 Msa0061340:intron 35.0%
! TGATATAGTCTTAGAGTGCA+CGG - chr1_2:19407592-19407611 Msa0061340:intron 35.0%
ACTCACAAATCCTAGTTTAG+AGG - chr1_2:19407724-19407743 Msa0061340:intron 35.0%
!! AAAGGTACTTAAGAGACATG+TGG + chr1_2:19407773-19407792 None:intergenic 35.0%
!! TCATATGTATAGTGGGCAAA+AGG + chr1_2:19407791-19407810 None:intergenic 35.0%
! TTGAGATGAGAGTCTTATGA+CGG - chr1_2:19408004-19408023 Msa0061340:intron 35.0%
! GTTTTGTATTGGGTCTTACT+TGG - chr1_2:19408085-19408104 Msa0061340:intron 35.0%
TATTGGGTCTTACTTGGTTT+GGG - chr1_2:19408091-19408110 Msa0061340:intron 35.0%
AAGCCACAGACCAAATAATT+AGG - chr1_2:19408192-19408211 Msa0061340:intron 35.0%
TCTCCTAATTATTTGGTCTG+TGG + chr1_2:19408198-19408217 None:intergenic 35.0%
TGATTCATGGCAAGACATTA+TGG - chr1_2:19408248-19408267 Msa0061340:intron 35.0%
TAAACCCTAACCCTATGTAT+AGG - chr1_2:19408431-19408450 Msa0061340:intron 35.0%
AAACCCTAACCCTATGTATA+GGG - chr1_2:19408432-19408451 Msa0061340:intron 35.0%
TATCCCTATACATAGGGTTA+GGG + chr1_2:19408438-19408457 None:intergenic 35.0%
ATATCCCTATACATAGGGTT+AGG + chr1_2:19408439-19408458 None:intergenic 35.0%
CATTAGTCATAAGCCAGATT+TGG + chr1_2:19409207-19409226 None:intergenic 35.0%
CTTGTAGTTTAGCAATCTGT+AGG + chr1_2:19409260-19409279 None:intergenic 35.0%
! AATCATGCAACTTTTAACGG+AGG - chr1_2:19409494-19409513 Msa0061340:intron 35.0%
GTTTCATCATCACTTCTTTC+AGG - chr1_2:19409516-19409535 Msa0061340:intron 35.0%
AATGAGTGCAAGCAGTATTT+AGG + chr1_2:19410013-19410032 None:intergenic 35.0%
TTGAACTGCATTCTTATAGG+GGG - chr1_2:19410034-19410053 Msa0061340:intron 35.0%
!! GTTTTCGAGGTTAACAGATA+GGG + chr1_2:19410142-19410161 None:intergenic 35.0%
!! AGTTTTCGAGGTTAACAGAT+AGG + chr1_2:19410143-19410162 None:intergenic 35.0%
!! TCAATATTGAGGAGTGCTAA+AGG - chr1_2:19410424-19410443 Msa0061340:intron 35.0%
GACACTGGAAAGAAGTAAAA+CGG - chr1_2:19410477-19410496 Msa0061340:intron 35.0%
TGGTTGAATGAGTAACTTTG+AGG + chr1_2:19410517-19410536 None:intergenic 35.0%
AGATAAAGATGATGCCATTG+AGG - chr1_2:19410720-19410739 Msa0061340:five_prime_UTR 35.0%
TTATCTGTCAGATGTTAGCA+AGG - chr1_2:19410833-19410852 Msa0061340:five_prime_UTR 35.0%
AAAGCGGTTCAGCAATATAA+AGG - chr1_2:19410975-19410994 Msa0061340:five_prime_UTR 35.0%
AAGCGGTTCAGCAATATAAA+GGG - chr1_2:19410976-19410995 Msa0061340:five_prime_UTR 35.0%
TTTACCTTCCAGAAATTAGC+TGG + chr1_2:19411023-19411042 None:intergenic 35.0%
!! CTGAGTGATTGTGACTTGTT+TGG + chr1_2:19405288-19405307 None:intergenic 40.0%
!!! AAGCGCTTTGTGTTTTGAAG+AGG + chr1_2:19405356-19405375 None:intergenic 40.0%
!! CATGAATTTGTTGCACGGTT+CGG - chr1_2:19405749-19405768 Msa0061340:CDS 40.0%
CAGTGAAAGTGGAGCTTAAT+CGG - chr1_2:19405775-19405794 Msa0061340:CDS 40.0%
!! AAGCTGAGATTAAAGCGTTG+AGG - chr1_2:19405941-19405960 Msa0061340:CDS 40.0%
GAGAGAAAAAGCTGTTGAAG+AGG - chr1_2:19405978-19405997 Msa0061340:CDS 40.0%
ACGACACTCACATGTAAACA+CGG - chr1_2:19406099-19406118 Msa0061340:CDS 40.0%
! CTTGGTTGACTTAGTTCAAC+TGG - chr1_2:19406332-19406351 Msa0061340:intron 40.0%
! TGGCAATGCTGAGATTTGTT+AGG - chr1_2:19406352-19406371 Msa0061340:intron 40.0%
AAACTCACACACACACAAAG+GGG + chr1_2:19406419-19406438 None:intergenic 40.0%
!! TGTGTGTGTGAGTTTTTAGG+TGG - chr1_2:19406424-19406443 Msa0061340:CDS 40.0%
TCCTGGTGGGATCATATTAT+TGG - chr1_2:19406551-19406570 Msa0061340:intron 40.0%
ACCAATAATATGATCCCACC+AGG + chr1_2:19406555-19406574 None:intergenic 40.0%
GTGGGATCATATTATTGGTG+TGG - chr1_2:19406556-19406575 Msa0061340:intron 40.0%
GAAGTTGCAGCTGAAAAATG+GGG - chr1_2:19406597-19406616 Msa0061340:intron 40.0%
!!! GTTTGTTTTAAGTGAGGGAG+GGG - chr1_2:19406635-19406654 Msa0061340:intron 40.0%
TGTAAACCAAGGGAGGATAA+AGG + chr1_2:19407184-19407203 None:intergenic 40.0%
TTATCCTCCCTTGGTTTACA+TGG - chr1_2:19407184-19407203 Msa0061340:intron 40.0%
TGCAATGCCATGTAAACCAA+GGG + chr1_2:19407194-19407213 None:intergenic 40.0%
ATGCAATGCCATGTAAACCA+AGG + chr1_2:19407195-19407214 None:intergenic 40.0%
ACTACTAGCGTAAGAACAGA+AGG - chr1_2:19407433-19407452 Msa0061340:intron 40.0%
! TGTGTCATTGCCTCTTAGAT+AGG + chr1_2:19407555-19407574 None:intergenic 40.0%
GCACGGAGAAGGAAAAAAAA+TGG - chr1_2:19407609-19407628 Msa0061340:intron 40.0%
AAAGTTAGGACATGGAGATG+AGG - chr1_2:19407632-19407651 Msa0061340:intron 40.0%
GAAGAGCTAGCAAGAGATTA+AGG - chr1_2:19407972-19407991 Msa0061340:intron 40.0%
GTATTGGGTCTTACTTGGTT+TGG - chr1_2:19408090-19408109 Msa0061340:intron 40.0%
TTACGCATGATAGAGGCAAA+AGG + chr1_2:19408689-19408708 None:intergenic 40.0%
! AAGAGCTGTCAAAGGTTGAT+GGG - chr1_2:19408825-19408844 Msa0061340:intron 40.0%
TAGGGCTCAAAGCAATACTT+TGG + chr1_2:19408882-19408901 None:intergenic 40.0%
ACTTGGCGAGAAAGAATTGA+TGG - chr1_2:19409176-19409195 Msa0061340:intron 40.0%
TAGTGCAGCTTCTTTGGATT+TGG + chr1_2:19409310-19409329 None:intergenic 40.0%
TTCAAGTAGTGCAGCTTCTT+TGG + chr1_2:19409316-19409335 None:intergenic 40.0%
AAAGACTGTTCAGTTTGCCT+TGG - chr1_2:19409341-19409360 Msa0061340:intron 40.0%
GAAACAGATTGAGATTTGCC+AGG - chr1_2:19409413-19409432 Msa0061340:intron 40.0%
GGACAGAATGCATAGACAAA+AGG - chr1_2:19409555-19409574 Msa0061340:intron 40.0%
CAGAATGCATAGACAAAAGG+TGG - chr1_2:19409558-19409577 Msa0061340:intron 40.0%
CTGTTGTGGTTGCAAATGAA+TGG - chr1_2:19409846-19409865 Msa0061340:intron 40.0%
AAGTCATGCCTGTCAAACAA+TGG - chr1_2:19409885-19409904 Msa0061340:intron 40.0%
TCTTCAAGCCATTGTTTGAC+AGG + chr1_2:19409896-19409915 None:intergenic 40.0%
AGTTTGAGGGGAAATTCTAG+CGG - chr1_2:19410244-19410263 Msa0061340:intron 40.0%
! GAGGGAAGAAGTATGAACAA+TGG - chr1_2:19410286-19410305 Msa0061340:intron 40.0%
TATCAACTCCACCTAGTGAT+TGG + chr1_2:19410324-19410343 None:intergenic 40.0%
!!! AATCTTTTGATGGTGGCTCA+AGG - chr1_2:19410455-19410474 Msa0061340:intron 40.0%
! AAAGAAGTAAAACGGTGCTG+AGG - chr1_2:19410485-19410504 Msa0061340:intron 40.0%
! AAGAAGTAAAACGGTGCTGA+GGG - chr1_2:19410486-19410505 Msa0061340:intron 40.0%
! CTTTGGTTTCTTCGAGAGAT+TGG + chr1_2:19410537-19410556 None:intergenic 40.0%
ATACTATCCTCTGTATCTGC+CGG + chr1_2:19410619-19410638 None:intergenic 40.0%
ATATGACCTCTTGCAGAAAG+AGG - chr1_2:19410651-19410670 Msa0061340:CDS 40.0%
TTGAGGCAAAGAAGATGAGA+AGG - chr1_2:19410887-19410906 Msa0061340:five_prime_UTR 40.0%
TGAGGCAAAGAAGATGAGAA+GGG - chr1_2:19410888-19410907 Msa0061340:five_prime_UTR 40.0%
TACAAGAGAACAGAGCAAAG+CGG - chr1_2:19410959-19410978 Msa0061340:five_prime_UTR 40.0%
! AGAACCAGCTAATTTCTGGA+AGG - chr1_2:19411016-19411035 Msa0061340:five_prime_UTR 40.0%
AGAATTTGAATGCGCGAGTG+AGG - chr1_2:19405573-19405592 Msa0061340:intron 45.0%
GAATTTGAATGCGCGAGTGA+GGG - chr1_2:19405574-19405593 Msa0061340:intron 45.0%
AGGGTTTCGTTTCAGATCGA+CGG - chr1_2:19405593-19405612 Msa0061340:CDS 45.0%
AACGATCCAGAAAATGGTGC+CGG + chr1_2:19405660-19405679 None:intergenic 45.0%
TTCTGCTAGACAGCAGAGTA+TGG - chr1_2:19405713-19405732 Msa0061340:CDS 45.0%
CGATTAAGCTCCACTTTCAC+TGG + chr1_2:19405777-19405796 None:intergenic 45.0%
!! AAGCGTTGAGGCATTCTGAA+CGG - chr1_2:19405953-19405972 Msa0061340:CDS 45.0%
! TTACATGTGAGTGTCGTGTG+TGG + chr1_2:19406096-19406115 None:intergenic 45.0%
CCAACACAATACCGACACAT+GGG + chr1_2:19406161-19406180 None:intergenic 45.0%
ACCAACACAATACCGACACA+TGG + chr1_2:19406162-19406181 None:intergenic 45.0%
!! GTGTTGGTGTCAAACACTGT+TGG - chr1_2:19406174-19406193 Msa0061340:intron 45.0%
TGGTTACCCAAGTTCGAACT+GGG - chr1_2:19406389-19406408 Msa0061340:intron 45.0%
!!! CATGTTGGGCTTGTTTTGTG+AGG - chr1_2:19406493-19406512 Msa0061340:CDS 45.0%
AATGCCATGTAAACCAAGGG+AGG + chr1_2:19407191-19407210 None:intergenic 45.0%
ACTAGCGTAAGAACAGAAGG+TGG - chr1_2:19407436-19407455 Msa0061340:intron 45.0%
TGTGCTGCAAGCCTATTATG+GGG + chr1_2:19407479-19407498 None:intergenic 45.0%
CTGTGCTGCAAGCCTATTAT+GGG + chr1_2:19407480-19407499 None:intergenic 45.0%
TAGGACATGGAGATGAGGTT+TGG - chr1_2:19407637-19407656 Msa0061340:intron 45.0%
AGGACATGGAGATGAGGTTT+GGG - chr1_2:19407638-19407657 Msa0061340:intron 45.0%
!! GACTCGTAAAAGCACTAGCA+AGG - chr1_2:19408127-19408146 Msa0061340:intron 45.0%
!! TCGTAAAAGCACTAGCAAGG+AGG - chr1_2:19408130-19408149 Msa0061340:intron 45.0%
!! CGTAAAAGCACTAGCAAGGA+GGG - chr1_2:19408131-19408150 Msa0061340:intron 45.0%
AGCAAGGAGGGTAGATCATA+TGG - chr1_2:19408143-19408162 Msa0061340:intron 45.0%
AAGGAGGGTAGATCATATGG+AGG - chr1_2:19408146-19408165 Msa0061340:intron 45.0%
GAAGAGCTGTCAAAGGTTGA+TGG - chr1_2:19408824-19408843 Msa0061340:intron 45.0%
TTGCAGCAGAAGCTACTCTT+CGG - chr1_2:19409026-19409045 Msa0061340:intron 45.0%
GGAGCAAGAATTGCTTCGAT+CGG + chr1_2:19409088-19409107 None:intergenic 45.0%
CGAAGCAATTCTTGCTCCTT+TGG - chr1_2:19409090-19409109 Msa0061340:intron 45.0%
AGCAATTCTTGCTCCTTTGG+AGG - chr1_2:19409093-19409112 Msa0061340:intron 45.0%
! AGCTTTAGTTCAGCCTCCAA+AGG + chr1_2:19409109-19409128 None:intergenic 45.0%
! AGGCTGAACTAAAGCTTGCT+CGG - chr1_2:19409113-19409132 Msa0061340:intron 45.0%
TGGCGAGAAAGAATTGATGG+AGG - chr1_2:19409179-19409198 Msa0061340:intron 45.0%
GGCGAGAAAGAATTGATGGA+GGG - chr1_2:19409180-19409199 Msa0061340:intron 45.0%
ATTGATGGAGGGACCAAATC+TGG - chr1_2:19409191-19409210 Msa0061340:intron 45.0%
!!! GTTTTGGAGATCATCCACCA+TGG + chr1_2:19409376-19409395 None:intergenic 45.0%
! TTTGCCAGGTATCGCAATCT+TGG - chr1_2:19409427-19409446 Msa0061340:intron 45.0%
AAAAGCTCACCCAAACTGTG+AGG - chr1_2:19409590-19409609 Msa0061340:intron 45.0%
AAAGCTCACCCAAACTGTGA+GGG - chr1_2:19409591-19409610 Msa0061340:intron 45.0%
!! TTCTAGCTCCCTCACAGTTT+GGG + chr1_2:19409602-19409621 None:intergenic 45.0%
!! TGTTTGCTGTTACCTTGGCA+CGG + chr1_2:19409820-19409839 None:intergenic 45.0%
TGCCAAGGTAACAGCAAACA+GGG - chr1_2:19409820-19409839 Msa0061340:intron 45.0%
!! TACCCTGTTTGCTGTTACCT+TGG + chr1_2:19409825-19409844 None:intergenic 45.0%
TGAAGAACGACGATTCTTGC+AGG - chr1_2:19409910-19409929 Msa0061340:intron 45.0%
CTTGGGCAAGAATCCATTAG+AGG + chr1_2:19410362-19410381 None:intergenic 45.0%
! ATAGGGATGACCTGAGTTGA+GGG + chr1_2:19410396-19410415 None:intergenic 45.0%
! AGAAGTAAAACGGTGCTGAG+GGG - chr1_2:19410487-19410506 Msa0061340:intron 45.0%
CGAAGAAACCAAAGAGAGAG+AGG - chr1_2:19410543-19410562 Msa0061340:CDS 45.0%
AGAAACCAAAGAGAGAGAGG+CGG - chr1_2:19410546-19410565 Msa0061340:CDS 45.0%
AGAGAGAGGCGGATGATAAT+TGG - chr1_2:19410557-19410576 Msa0061340:CDS 45.0%
GAGGCGGATGATAATTGGAA+AGG - chr1_2:19410562-19410581 Msa0061340:CDS 45.0%
TAAGCCAAATGACTTCCCAC+CGG - chr1_2:19410597-19410616 Msa0061340:CDS 45.0%
TTCATGACCAGCTTTCCTCA+AGG + chr1_2:19410683-19410702 None:intergenic 45.0%
CTGTCAGATGTTAGCAAGGA+AGG - chr1_2:19410837-19410856 Msa0061340:five_prime_UTR 45.0%
AGATACGTTGACCAAAGCCA+TGG - chr1_2:19410861-19410880 Msa0061340:five_prime_UTR 45.0%
CTTCTTTGCCTCAACTTCCA+TGG + chr1_2:19410881-19410900 None:intergenic 45.0%
GGAAGTAGCTTCCATGGAAA+AGG - chr1_2:19410909-19410928 Msa0061340:five_prime_UTR 45.0%
AGTAGCTTCCATGGAAAAGG+AGG - chr1_2:19410912-19410931 Msa0061340:five_prime_UTR 45.0%
!! GGTTCTGAGCACTGTTTACA+GGG + chr1_2:19411002-19411021 None:intergenic 45.0%
!! TGGTTCTGAGCACTGTTTAC+AGG + chr1_2:19411003-19411022 None:intergenic 45.0%
GCTCAGAACCAGCTAATTTC+TGG - chr1_2:19411012-19411031 Msa0061340:five_prime_UTR 45.0%
!!! AATTTTACTTAATTTTTTTT+TGG - chr1_2:19405856-19405875 Msa0061340:CDS 5.0%
!!! TTTATTATGTTTTTTTTTTT+TGG - chr1_2:19406254-19406273 Msa0061340:CDS 5.0%
!!! TTATTATGTTTTTTTTTTTT+GGG - chr1_2:19406255-19406274 Msa0061340:CDS 5.0%
!! AAAATATTAAAAGAAAATAA+GGG + chr1_2:19407028-19407047 None:intergenic 5.0%
!! TAAAATATTAAAAGAAAATA+AGG + chr1_2:19407029-19407048 None:intergenic 5.0%
!! TTTATATCAAAAAATAAATA+AGG + chr1_2:19409969-19409988 None:intergenic 5.0%
!!! TATTTTTTTTTTATTTTTTC+AGG - chr1_2:19410186-19410205 Msa0061340:intron 5.0%
!!! TAATTGTTTTTTTTTTTTTT+TGG - chr1_2:19410759-19410778 Msa0061340:five_prime_UTR 5.0%
ACGGCGATGGAGGAGATTTA+CGG - chr1_2:19405612-19405631 Msa0061340:CDS 50.0%
ATGGAGGAGATTTACGGCGA+CGG - chr1_2:19405618-19405637 Msa0061340:CDS 50.0%
AGAACTTCGTCGAGAAGACG+CGG - chr1_2:19405690-19405709 Msa0061340:CDS 50.0%
CGGCTTGAGAATGAAGTTCG+AGG - chr1_2:19405795-19405814 Msa0061340:CDS 50.0%
! CCCATGTGTCGGTATTGTGT+TGG - chr1_2:19406158-19406177 Msa0061340:intron 50.0%
GTGGTTACCCAAGTTCGAAC+TGG - chr1_2:19406388-19406407 Msa0061340:intron 50.0%
GGAGATCCCAGTTCGAACTT+GGG + chr1_2:19406398-19406417 None:intergenic 50.0%
AGCGTAAGAACAGAAGGTGG+TGG - chr1_2:19407439-19407458 Msa0061340:intron 50.0%
CCTGTGCTGCAAGCCTATTA+TGG + chr1_2:19407481-19407500 None:intergenic 50.0%
CCATAATAGGCTTGCAGCAC+AGG - chr1_2:19407478-19407497 Msa0061340:CDS 50.0%
AGTCTTAGAGTGCACGGAGA+AGG - chr1_2:19407598-19407617 Msa0061340:intron 50.0%
!! CTTGGTTTGGGCATGTGTAG+TGG - chr1_2:19408103-19408122 Msa0061340:intron 50.0%
GCTGTCTGAAGAGCTGTCAA+AGG - chr1_2:19408817-19408836 Msa0061340:intron 50.0%
AGCAGAAGCTACTCTTCGGA+GGG - chr1_2:19409030-19409049 Msa0061340:intron 50.0%
CATCATCCTTCTGAGCAGCA+TGG + chr1_2:19409057-19409076 None:intergenic 50.0%
GCAAGAATTGCTTCGATCGG+AGG + chr1_2:19409085-19409104 None:intergenic 50.0%
! ACTAAAGCTTGCTCGGCAAG+AGG - chr1_2:19409120-19409139 Msa0061340:intron 50.0%
TGTTCAGTTTGCCTTGGCCA+AGG - chr1_2:19409347-19409366 Msa0061340:intron 50.0%
TTGGAGATCATCCACCATGG+AGG + chr1_2:19409373-19409392 None:intergenic 50.0%
TCGTCCAAGATTGCGATACC+TGG + chr1_2:19409434-19409453 None:intergenic 50.0%
GCATAGACAAAAGGTGGCAG+AGG - chr1_2:19409564-19409583 Msa0061340:intron 50.0%
!! CTTCTAGCTCCCTCACAGTT+TGG + chr1_2:19409603-19409622 None:intergenic 50.0%
CTAGAAGAGTCAGTCCTTGC+AGG - chr1_2:19409616-19409635 Msa0061340:intron 50.0%
GTGCCAAGGTAACAGCAAAC+AGG - chr1_2:19409819-19409838 Msa0061340:intron 50.0%
AGCAAACAGGGTAGCTGTTG+TGG - chr1_2:19409832-19409851 Msa0061340:intron 50.0%
TCAATTGCGGCTCAAAGTGC+TGG - chr1_2:19410216-19410235 Msa0061340:intron 50.0%
!! AAGTGCTGGAGGAGAGTTTG+AGG - chr1_2:19410230-19410249 Msa0061340:intron 50.0%
! AGTGCTGGAGGAGAGTTTGA+GGG - chr1_2:19410231-19410250 Msa0061340:intron 50.0%
TCTTCTCGTCGCCAATCACT+AGG - chr1_2:19410310-19410329 Msa0061340:intron 50.0%
TGAGGGGATGGTGTTCTCTT+GGG + chr1_2:19410379-19410398 None:intergenic 50.0%
TTGAGGGGATGGTGTTCTCT+TGG + chr1_2:19410380-19410399 None:intergenic 50.0%
! TAGGGATGACCTGAGTTGAG+GGG + chr1_2:19410395-19410414 None:intergenic 50.0%
GATAGGGATGACCTGAGTTG+AGG + chr1_2:19410397-19410416 None:intergenic 50.0%
ATCATCCGCCTCTCTCTCTT+TGG + chr1_2:19410554-19410573 None:intergenic 50.0%
TATCCTCTGTATCTGCCGGT+GGG + chr1_2:19410615-19410634 None:intergenic 50.0%
CAACGACCTCTTTCTGCAAG+AGG + chr1_2:19410660-19410679 None:intergenic 50.0%
AGAAAGAGGTCGTTGCCTTG+AGG - chr1_2:19410665-19410684 Msa0061340:CDS 50.0%
GACCAAAGCCATGGAAGTTG+AGG - chr1_2:19410870-19410889 Msa0061340:five_prime_UTR 50.0%
TGCCTCAACTTCCATGGCTT+TGG + chr1_2:19410875-19410894 None:intergenic 50.0%
GAGAAGGGAAGTAGCTTCCA+TGG - chr1_2:19410903-19410922 Msa0061340:five_prime_UTR 50.0%
! AGCAGCTACCTCCTTTTCCA+TGG + chr1_2:19410923-19410942 None:intergenic 50.0%
TCGTTTCAGATCGACGGCGA+TGG - chr1_2:19405599-19405618 Msa0061340:CDS 55.0%
TTTCAGATCGACGGCGATGG+AGG - chr1_2:19405602-19405621 Msa0061340:CDS 55.0%
! CGGTTCGGATCCAGTGAAAG+TGG - chr1_2:19405764-19405783 Msa0061340:CDS 55.0%
GGGAGATCCCAGTTCGAACT+TGG + chr1_2:19406399-19406418 None:intergenic 55.0%
CAGCAGAAGCTACTCTTCGG+AGG - chr1_2:19409029-19409048 Msa0061340:intron 55.0%
ATCATCCACCATGGAGGCCT+TGG + chr1_2:19409367-19409386 None:intergenic 55.0%
GAAGAGTCAGTCCTTGCAGG+TGG - chr1_2:19409619-19409638 Msa0061340:intron 55.0%
!! ATTGCGGCTCAAAGTGCTGG+AGG - chr1_2:19410219-19410238 Msa0061340:intron 55.0%
GTGCTGGAGGAGAGTTTGAG+GGG - chr1_2:19410232-19410251 Msa0061340:intron 55.0%
TCTCGTCGCCAATCACTAGG+TGG - chr1_2:19410313-19410332 Msa0061340:intron 55.0%
GAACACCATCCCCTCAACTC+AGG - chr1_2:19410383-19410402 Msa0061340:CDS 55.0%
! GATGACCTGAGTTGAGGGGA+TGG + chr1_2:19410391-19410410 None:intergenic 55.0%
!! TGATGGTGGCTCAAGGACAC+TGG - chr1_2:19410462-19410481 Msa0061340:intron 55.0%
TCTGCCGGTGGGAAGTCATT+TGG + chr1_2:19410604-19410623 None:intergenic 55.0%
CTATCCTCTGTATCTGCCGG+TGG + chr1_2:19410616-19410635 None:intergenic 55.0%
GTCGTTGCCTTGAGGAAAGC+TGG - chr1_2:19410673-19410692 Msa0061340:CDS 55.0%
GAGGAGATTTACGGCGACGG+AGG - chr1_2:19405621-19405640 Msa0061340:CDS 60.0%
GATTTACGGCGACGGAGGAG+CGG - chr1_2:19405626-19405645 Msa0061340:CDS 60.0%
! GCGACTCCGGCACCATTTTC+TGG - chr1_2:19405651-19405670 Msa0061340:CDS 60.0%
GTGAGGGAGGGGTGATGCAT+AGG - chr1_2:19406646-19406665 Msa0061340:CDS 60.0%
GAGGGTCCATGCTGCTCAGA+AGG - chr1_2:19409048-19409067 Msa0061340:intron 60.0%
TTGCTGCTGCACCACCTGCA+AGG + chr1_2:19409633-19409652 None:intergenic 60.0%
TAGAGAGTTGGGCCGTGCCA+AGG - chr1_2:19409805-19409824 Msa0061340:intron 60.0%
CTTCCCACCGGCAGATACAG+AGG - chr1_2:19410609-19410628 Msa0061340:CDS 60.0%
TGCCTTGGCCAAGGCCTCCA+TGG - chr1_2:19409356-19409375 Msa0061340:intron 65.0%
CACCATGGAGGCCTTGGCCA+AGG + chr1_2:19409361-19409380 None:intergenic 65.0%
CTTGGCCAAGGCCTCCATGG+TGG - chr1_2:19409359-19409378 Msa0061340:intron 65.0%
TTACGGCGACGGAGGAGCGG+TGG - chr1_2:19405629-19405648 Msa0061340:CDS 70.0%
CGGAGGAGCGGTGGCGACTC+CGG - chr1_2:19405638-19405657 Msa0061340:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 19405282 19411047 19405282 ID=Msa0061340;Name=Msa0061340
chr1_2 mRNA 19405282 19411047 19405282 ID=Msa0061340-mRNA-1;Parent=Msa0061340;Name=Msa0061340-mRNA-1;_AED=0.14;_eAED=0.14;_QI=336|1|1|1|1|1|10|6|599
chr1_2 exon 19405282 19405485 19405282 ID=Msa0061340-mRNA-1:exon:7544;Parent=Msa0061340-mRNA-1
chr1_2 exon 19405588 19406121 19405588 ID=Msa0061340-mRNA-1:exon:7543;Parent=Msa0061340-mRNA-1
chr1_2 exon 19406205 19406276 19406205 ID=Msa0061340-mRNA-1:exon:7542;Parent=Msa0061340-mRNA-1
chr1_2 exon 19406398 19406544 19406398 ID=Msa0061340-mRNA-1:exon:7541;Parent=Msa0061340-mRNA-1
chr1_2 exon 19406636 19406791 19406636 ID=Msa0061340-mRNA-1:exon:7540;Parent=Msa0061340-mRNA-1
chr1_2 exon 19406895 19407065 19406895 ID=Msa0061340-mRNA-1:exon:7539;Parent=Msa0061340-mRNA-1
chr1_2 exon 19407188 19407358 19407188 ID=Msa0061340-mRNA-1:exon:7538;Parent=Msa0061340-mRNA-1
chr1_2 exon 19407446 19407511 19407446 ID=Msa0061340-mRNA-1:exon:7537;Parent=Msa0061340-mRNA-1
chr1_2 exon 19410330 19410415 19410330 ID=Msa0061340-mRNA-1:exon:7536;Parent=Msa0061340-mRNA-1
chr1_2 exon 19410513 19411047 19410513 ID=Msa0061340-mRNA-1:exon:7535;Parent=Msa0061340-mRNA-1
chr1_2 five_prime_UTR 19410712 19411047 19410712 ID=Msa0061340-mRNA-1:five_prime_utr;Parent=Msa0061340-mRNA-1
chr1_2 CDS 19410513 19410711 19410513 ID=Msa0061340-mRNA-1:cds;Parent=Msa0061340-mRNA-1
chr1_2 CDS 19410330 19410415 19410330 ID=Msa0061340-mRNA-1:cds;Parent=Msa0061340-mRNA-1
chr1_2 CDS 19407446 19407511 19407446 ID=Msa0061340-mRNA-1:cds;Parent=Msa0061340-mRNA-1
chr1_2 CDS 19407188 19407358 19407188 ID=Msa0061340-mRNA-1:cds;Parent=Msa0061340-mRNA-1
chr1_2 CDS 19406895 19407065 19406895 ID=Msa0061340-mRNA-1:cds;Parent=Msa0061340-mRNA-1
chr1_2 CDS 19406636 19406791 19406636 ID=Msa0061340-mRNA-1:cds;Parent=Msa0061340-mRNA-1
chr1_2 CDS 19406398 19406544 19406398 ID=Msa0061340-mRNA-1:cds;Parent=Msa0061340-mRNA-1
chr1_2 CDS 19406205 19406276 19406205 ID=Msa0061340-mRNA-1:cds;Parent=Msa0061340-mRNA-1
chr1_2 CDS 19405588 19406121 19405588 ID=Msa0061340-mRNA-1:cds;Parent=Msa0061340-mRNA-1
chr1_2 CDS 19405288 19405485 19405288 ID=Msa0061340-mRNA-1:cds;Parent=Msa0061340-mRNA-1
chr1_2 three_prime_UTR 19405282 19405287 19405282 ID=Msa0061340-mRNA-1:three_prime_utr;Parent=Msa0061340-mRNA-1
Gene Sequence

>Msa0061340

ATGGAGGAGATTTACGGCGACGGAGGAGCGGTGGCGACTCCGGCACCATTTTCTGGATCGTTTAGAGAAGGTAGAACTTCGTCGAGAAGACGCGGTTCTGCTAGACAGCAGAGTATGGATGCTGATGAGTTCATGAATTTGTTGCACGGTTCGGATCCAGTGAAAGTGGAGCTTAATCGGCTTGAGAATGAAGTTCGAGATAAGGATAGAGAATTATTGGAAGCACAAGCTGAGATTAAAGCGTTGAGGCATTCTGAACGGTTGAGAGAAAAAGCTGTTGAAGAGCTGTCTGAAGAGCTGTCAAAGGTTGATGGGAAGCTAAAATTAACGGAATCTCTATTAGAAACCAAAAATCTTGAAATAAAAAAAATCAATGATGAAAAGAAAGCATCAATGGCAGCTCAGTTTGCAGCAGAAGCTACTCTTCGGAGGGTCCATGCTGCTCAGAAGGATGATGACATGCCTCCGATCGAAGCAATTCTTGCTCCTTTGGAGGCTGAACTAAAGCTTGCTCGGCAAGAGATTGCTAAACTACAAGATGACAACAGAGCTTTAGATCGTCTTACCAAATCCAAAGAAGCTGCACTACTTGAAGCTGAAAAGACTGTTCAGTTTGCCTTGGCCAAGGCCTCCATGGTGGATGATCTCCAAAACAAAAATCAAGAGCTGATGAAACAGATTGAGATTTGCCAGGAAGAAAACAAAATCTTGGACAGAATGCATAGACAAAAGGTGGCAGAGGTTGAAAAGCTCACCCAAACTGTGAGGGAGCTAGAAGAGTCAGTCCTTGCAGGTGGTGCAGCAGCAAATGCAGTTAGAGATTATCAACGGAAAGTTCAAGAAATGAATGAAGAACGAAAAACACTTAATAGAGAGTTGGGCCGTGCCAAGGTAACAGCAAACAGGGTAGCTGTTGTGGTTGCAAATGAATGGAAAGATTCTAATGATAAAGTCATGCCTGTCAAACAATGGCTTGAAGAACGACGATTCTTGCAGGGGGAAATGCAGCAACTTCGTGATAAGCTTGCTATAGTTGAGCGCACTGCAAAGTCTGAAGCACAATTGAAAGAAAAATATCAATTGCGGCTCAAAGTGCTGGAGGAGAGTTTGAGGGGAAATTCTAGCGGCAGTAGTCGCAGCACCGCAGAGGGAAGAAGTATGAACAATGGTTCTTCTCGTCGCCAATCACTAGGTGGAGTTGATAATATCTCAAAATTAACCTCTAATGGATTCTTGCCCAAGAGAACACCATCCCCTCAACTCAGGTCATCCCTATCATCTAGCTCAATATTGAGGAGTGCTAAAGGAACATCTAAATCTTTTGATGGTGGCTCAAGGACACTGGAAAGAAGTAAAACGGTGCTGAGGGGAGCACCTCAAAGTTACTCATTCAACCAATCTCTCGAAGAAACCAAAGAGAGAGAGGCGGATGATAATTGGAAAGGAAATTCAGGTGATAAGCCAAATGACTTCCCACCGGCAGATACAGAGGATAGTATTCCAAGTGTTTTATATGACCTCTTGCAGAAAGAGGTCGTTGCCTTGAGGAAAGCTGGTCATGAAAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAGATGTTAGCAAGGAAGGTAGATACGTTGACCAAAGCCATGGAAGTTGAGGCAAAGAAGATGAGAAGGGAAGTAGCTTCCATGGAAAAGGAGGTAGCTGCTATGCGTGTCGACAAAGTACAAGAGAACAGAGCAAAGCGGTTCAGCAATATAAAGGGCCCTGTAAACAGTGCTCAGAACCAGCTAATTTCTGGAAGGTAA

Protein sequence

>Msa0061340

MEEIYGDGGAVATPAPFSGSFREGRTSSRRRGSARQQSMDADEFMNLLHGSDPVKVELNRLENEVRDKDRELLEAQAEIKALRHSERLREKAVEELSEELSKVDGKLKLTESLLETKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNRALDRLTKSKEAALLEAEKTVQFALAKASMVDDLQNKNQELMKQIEICQEENKILDRMHRQKVAEVEKLTQTVRELEESVLAGGAAANAVRDYQRKVQEMNEERKTLNRELGRAKVTANRVAVVVANEWKDSNDKVMPVKQWLEERRFLQGEMQQLRDKLAIVERTAKSEAQLKEKYQLRLKVLEESLRGNSSGSSRSTAEGRSMNNGSSRRQSLGGVDNISKLTSNGFLPKRTPSPQLRSSLSSSSILRSAKGTSKSFDGGSRTLERSKTVLRGAPQSYSFNQSLEETKEREADDNWKGNSGDKPNDFPPADTEDSIPSVLYDLLQKEVVALRKAGHEKDQSLKDKDDAIEMLARKVDTLTKAMEVEAKKMRREVASMEKEVAAMRVDKVQENRAKRFSNIKGPVNSAQNQLISGR*