Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920990 | PNX91063.1 | 93.333 | 75 | 5 | 0 | 1 | 75 | 151 | 225 | 6.89e-42 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0274610 | Msa0920990 | 0.801247 | 9.850901e-49 | -8.615850e-47 |
| Msa0314050 | Msa0920990 | 0.817945 | 2.533925e-52 | -8.615850e-47 |
| Msa0920980 | Msa0920990 | 0.910371 | 2.019746e-82 | -8.615850e-47 |
| Msa0920990 | Msa1025370 | 0.809132 | 2.200709e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920990 | MtrunA17_Chr8g0334511 | 48.571 | 70 | 36 | 0 | 1 | 70 | 4 | 73 | 5.30e-22 | 90.9 |
| Msa0920990 | MtrunA17_Chr3g0083121 | 45.714 | 70 | 38 | 0 | 1 | 70 | 150 | 219 | 1.58e-20 | 86.7 |
| Msa0920990 | MtrunA17_Chr6g0474221 | 36.082 | 97 | 57 | 1 | 1 | 92 | 151 | 247 | 3.25e-18 | 79.7 |
| Msa0920990 | MtrunA17_Chr3g0145811 | 40.000 | 70 | 42 | 0 | 1 | 70 | 153 | 222 | 1.96e-17 | 76.3 |
| Msa0920990 | MtrunA17_Chr1g0163881 | 40.000 | 70 | 42 | 0 | 1 | 70 | 106 | 175 | 1.29e-15 | 72.0 |
| Msa0920990 | MtrunA17_Chr2g0302521 | 39.437 | 71 | 42 | 1 | 1 | 70 | 164 | 234 | 1.80e-12 | 63.5 |
| Msa0920990 | MtrunA17_Chr4g0071691 | 24.576 | 118 | 82 | 3 | 1 | 112 | 79 | 195 | 4.41e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGTTCAATTAACATGATT+TGG | 0.262265 | 6_2:-56917345 | None:intergenic |
| GGGTTCAATTAACATGATTT+GGG | 0.340338 | 6_2:-56917344 | None:intergenic |
| TTCCATTTCATCTCCACAAA+TGG | 0.352568 | 6_2:+56917873 | Msa0920990:CDS |
| TTAGGTAACCCCATGGTAAA+AGG | 0.359013 | 6_2:-56917988 | None:intergenic |
| GATTGCACAAGTGCAATCTT+TGG | 0.364059 | 6_2:-56917218 | None:intergenic |
| ACCCATTTGTGGAGATGAAA+TGG | 0.383020 | 6_2:-56917875 | None:intergenic |
| GAAGGAGATGAATAATTTGT+TGG | 0.399337 | 6_2:-56917765 | None:intergenic |
| TGGGTAAGAAATCTGTCCTT+TGG | 0.402165 | 6_2:+56917893 | Msa0920990:CDS |
| ACAGATTTCTTACCCATTTG+TGG | 0.409559 | 6_2:-56917886 | None:intergenic |
| GAAATCTGTCCTTTGGATCA+TGG | 0.456341 | 6_2:+56917900 | Msa0920990:CDS |
| TGTGCAATCCCTTGCACTTG+TGG | 0.463040 | 6_2:+56917232 | Msa0920990:CDS |
| TCCATTTCATCTCCACAAAT+GGG | 0.470995 | 6_2:+56917874 | Msa0920990:CDS |
| TGGAGATGAAATGGAATGAA+TGG | 0.485613 | 6_2:-56917866 | None:intergenic |
| GTCCTTTGGATCATGGATAC+AGG | 0.486895 | 6_2:+56917907 | Msa0920990:CDS |
| GCACAAGTGCAATCTTTGGT+AGG | 0.511222 | 6_2:-56917214 | None:intergenic |
| GAGTTGGCAGCAGCTTGTTG+TGG | 0.517038 | 6_2:-56917823 | None:intergenic |
| GAATGGATGTAGATTGAGAA+AGG | 0.522894 | 6_2:-56917849 | None:intergenic |
| CACAAGTGCAATCTTTGGTA+GGG | 0.529323 | 6_2:-56917213 | None:intergenic |
| GTCTTGGACAAAATTGGGAG+GGG | 0.531906 | 6_2:-56917364 | None:intergenic |
| AAGGTAATCAAATTTCTGAA+AGG | 0.570570 | 6_2:+56917292 | Msa0920990:CDS |
| GAAGCAGCACCACAAGTGCA+AGG | 0.574646 | 6_2:-56917241 | None:intergenic |
| AGTCTTGGACAAAATTGGGA+GGG | 0.582894 | 6_2:-56917365 | None:intergenic |
| TTGTGGAGCAATGTTAGTAG+TGG | 0.602785 | 6_2:-56917806 | None:intergenic |
| CACCTGTATCCATGATCCAA+AGG | 0.618226 | 6_2:-56917909 | None:intergenic |
| AAGCAGCACCACAAGTGCAA+GGG | 0.619321 | 6_2:-56917240 | None:intergenic |
| AAGAGAATGAGTAATATGAT+CGG | 0.624007 | 6_2:-56917935 | None:intergenic |
| AAGTGCAATCTTTGGTAGGG+CGG | 0.635061 | 6_2:-56917210 | None:intergenic |
| AGATTGAGAAAGGACAGAGT+TGG | 0.636653 | 6_2:-56917839 | None:intergenic |
| GGTAACCCCATGGTAAAAGG+AGG | 0.657507 | 6_2:-56917985 | None:intergenic |
| AGAATGAGTAATATGATCGG+TGG | 0.659069 | 6_2:-56917932 | None:intergenic |
| AAGTCTTGGACAAAATTGGG+AGG | 0.664413 | 6_2:-56917366 | None:intergenic |
| AAAATACAAGGAACAAGACA+AGG | 0.682545 | 6_2:+56917273 | Msa0920990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTGATTTTCAAAAATACA+AGG | + | chr6_2:56917261-56917280 | Msa0920990:CDS | 20.0% |
| !!! | ATTCAATCTTCTTTTACAAA+TGG | + | chr6_2:56917475-56917494 | Msa0920990:intron | 20.0% |
| !!! | TTCTGATTTTCAAAAATACA+AGG | + | chr6_2:56917261-56917280 | Msa0920990:CDS | 20.0% |
| !!! | ATTCAATCTTCTTTTACAAA+TGG | + | chr6_2:56917475-56917494 | Msa0920990:intron | 20.0% |
| ! | AAGGTAATCAAATTTCTGAA+AGG | + | chr6_2:56917292-56917311 | Msa0920990:CDS | 25.0% |
| ! | AAAAAGTCTTGGACAAAATT+GGG | - | chr6_2:56917372-56917391 | None:intergenic | 25.0% |
| !!! | AAGAAGTCGTATTATTTTGA+AGG | - | chr6_2:56917786-56917805 | None:intergenic | 25.0% |
| ! | AAGAGAATGAGTAATATGAT+CGG | - | chr6_2:56917938-56917957 | None:intergenic | 25.0% |
| ! | AAGGTAATCAAATTTCTGAA+AGG | + | chr6_2:56917292-56917311 | Msa0920990:CDS | 25.0% |
| ! | AAAAAGTCTTGGACAAAATT+GGG | - | chr6_2:56917372-56917391 | None:intergenic | 25.0% |
| !!! | AAGAAGTCGTATTATTTTGA+AGG | - | chr6_2:56917786-56917805 | None:intergenic | 25.0% |
| ! | AAGAGAATGAGTAATATGAT+CGG | - | chr6_2:56917938-56917957 | None:intergenic | 25.0% |
| AAAATACAAGGAACAAGACA+AGG | + | chr6_2:56917273-56917292 | Msa0920990:CDS | 30.0% | |
| GGGTTCAATTAACATGATTT+GGG | - | chr6_2:56917347-56917366 | None:intergenic | 30.0% | |
| GAAAAAGTCTTGGACAAAAT+TGG | - | chr6_2:56917373-56917392 | None:intergenic | 30.0% | |
| ! | CAATCTTCTTTTACAAATGG+TGG | + | chr6_2:56917478-56917497 | Msa0920990:intron | 30.0% |
| AAAGGCCAATTTCAAAATAG+AGG | + | chr6_2:56917511-56917530 | Msa0920990:intron | 30.0% | |
| CCAATTTCAAAATAGAGGAA+GGG | + | chr6_2:56917516-56917535 | Msa0920990:intron | 30.0% | |
| CAATTTCAAAATAGAGGAAG+GGG | + | chr6_2:56917517-56917536 | Msa0920990:intron | 30.0% | |
| ! | ATGACTTATTGTTCTTTTGC+TGG | - | chr6_2:56917651-56917670 | None:intergenic | 30.0% |
| !! | TAATTTGTTGGTATTGTTCC+TGG | - | chr6_2:56917756-56917775 | None:intergenic | 30.0% |
| ! | GAAGGAGATGAATAATTTGT+TGG | - | chr6_2:56917768-56917787 | None:intergenic | 30.0% |
| AAAATACAAGGAACAAGACA+AGG | + | chr6_2:56917273-56917292 | Msa0920990:CDS | 30.0% | |
| GGGTTCAATTAACATGATTT+GGG | - | chr6_2:56917347-56917366 | None:intergenic | 30.0% | |
| GAAAAAGTCTTGGACAAAAT+TGG | - | chr6_2:56917373-56917392 | None:intergenic | 30.0% | |
| ! | CAATCTTCTTTTACAAATGG+TGG | + | chr6_2:56917478-56917497 | Msa0920990:intron | 30.0% |
| AAAGGCCAATTTCAAAATAG+AGG | + | chr6_2:56917511-56917530 | Msa0920990:intron | 30.0% | |
| CCAATTTCAAAATAGAGGAA+GGG | + | chr6_2:56917516-56917535 | Msa0920990:intron | 30.0% | |
| CAATTTCAAAATAGAGGAAG+GGG | + | chr6_2:56917517-56917536 | Msa0920990:intron | 30.0% | |
| ! | ATGACTTATTGTTCTTTTGC+TGG | - | chr6_2:56917651-56917670 | None:intergenic | 30.0% |
| !! | TAATTTGTTGGTATTGTTCC+TGG | - | chr6_2:56917756-56917775 | None:intergenic | 30.0% |
| ! | GAAGGAGATGAATAATTTGT+TGG | - | chr6_2:56917768-56917787 | None:intergenic | 30.0% |
| GGGGTTCAATTAACATGATT+TGG | - | chr6_2:56917348-56917367 | None:intergenic | 35.0% | |
| !! | TTTGTCCAAGACTTTTTCCT+TGG | + | chr6_2:56917375-56917394 | Msa0920990:CDS | 35.0% |
| TAACACCAAGGAAAAAGTCT+TGG | - | chr6_2:56917383-56917402 | None:intergenic | 35.0% | |
| !!! | AAGACTTTTTCCTTGGTGTT+AGG | + | chr6_2:56917382-56917401 | Msa0920990:intron | 35.0% |
| GATTGAATTTGCATAGCAAG+AGG | - | chr6_2:56917463-56917482 | None:intergenic | 35.0% | |
| ! | TCTTCTTTTACAAATGGTGG+AGG | + | chr6_2:56917481-56917500 | Msa0920990:intron | 35.0% |
| GCCAATTTCAAAATAGAGGA+AGG | + | chr6_2:56917515-56917534 | Msa0920990:intron | 35.0% | |
| !!! | CCCTTCCTCTATTTTGAAAT+TGG | - | chr6_2:56917519-56917538 | None:intergenic | 35.0% |
| !! | CTCGTATATGTACTTTTTGC+TGG | + | chr6_2:56917569-56917588 | Msa0920990:intron | 35.0% |
| GAAAACAAGTCTCAATGGTA+TGG | - | chr6_2:56917603-56917622 | None:intergenic | 35.0% | |
| CTTGAGAAAACAAGTCTCAA+TGG | - | chr6_2:56917608-56917627 | None:intergenic | 35.0% | |
| !! | TTGAGTTGAAGTTTGTTCAG+AGG | - | chr6_2:56917698-56917717 | None:intergenic | 35.0% |
| CTGGATGGTATTTAAAGAAG+TGG | - | chr6_2:56917737-56917756 | None:intergenic | 35.0% | |
| CACTTCTTTAAATACCATCC+AGG | + | chr6_2:56917735-56917754 | Msa0920990:intron | 35.0% | |
| GAATGGATGTAGATTGAGAA+AGG | - | chr6_2:56917852-56917871 | None:intergenic | 35.0% | |
| TGGAGATGAAATGGAATGAA+TGG | - | chr6_2:56917869-56917888 | None:intergenic | 35.0% | |
| TTCCATTTCATCTCCACAAA+TGG | + | chr6_2:56917873-56917892 | Msa0920990:CDS | 35.0% | |
| TCCATTTCATCTCCACAAAT+GGG | + | chr6_2:56917874-56917893 | Msa0920990:CDS | 35.0% | |
| ACAGATTTCTTACCCATTTG+TGG | - | chr6_2:56917889-56917908 | None:intergenic | 35.0% | |
| AGAATGAGTAATATGATCGG+TGG | - | chr6_2:56917935-56917954 | None:intergenic | 35.0% | |
| GGGGTTCAATTAACATGATT+TGG | - | chr6_2:56917348-56917367 | None:intergenic | 35.0% | |
| !! | TTTGTCCAAGACTTTTTCCT+TGG | + | chr6_2:56917375-56917394 | Msa0920990:CDS | 35.0% |
| TAACACCAAGGAAAAAGTCT+TGG | - | chr6_2:56917383-56917402 | None:intergenic | 35.0% | |
| !!! | AAGACTTTTTCCTTGGTGTT+AGG | + | chr6_2:56917382-56917401 | Msa0920990:intron | 35.0% |
| GATTGAATTTGCATAGCAAG+AGG | - | chr6_2:56917463-56917482 | None:intergenic | 35.0% | |
| ! | TCTTCTTTTACAAATGGTGG+AGG | + | chr6_2:56917481-56917500 | Msa0920990:intron | 35.0% |
| GCCAATTTCAAAATAGAGGA+AGG | + | chr6_2:56917515-56917534 | Msa0920990:intron | 35.0% | |
| !!! | CCCTTCCTCTATTTTGAAAT+TGG | - | chr6_2:56917519-56917538 | None:intergenic | 35.0% |
| !! | CTCGTATATGTACTTTTTGC+TGG | + | chr6_2:56917569-56917588 | Msa0920990:intron | 35.0% |
| GAAAACAAGTCTCAATGGTA+TGG | - | chr6_2:56917603-56917622 | None:intergenic | 35.0% | |
| CTTGAGAAAACAAGTCTCAA+TGG | - | chr6_2:56917608-56917627 | None:intergenic | 35.0% | |
| !! | TTGAGTTGAAGTTTGTTCAG+AGG | - | chr6_2:56917698-56917717 | None:intergenic | 35.0% |
| CTGGATGGTATTTAAAGAAG+TGG | - | chr6_2:56917737-56917756 | None:intergenic | 35.0% | |
| CACTTCTTTAAATACCATCC+AGG | + | chr6_2:56917735-56917754 | Msa0920990:intron | 35.0% | |
| GAATGGATGTAGATTGAGAA+AGG | - | chr6_2:56917852-56917871 | None:intergenic | 35.0% | |
| TGGAGATGAAATGGAATGAA+TGG | - | chr6_2:56917869-56917888 | None:intergenic | 35.0% | |
| TTCCATTTCATCTCCACAAA+TGG | + | chr6_2:56917873-56917892 | Msa0920990:CDS | 35.0% | |
| TCCATTTCATCTCCACAAAT+GGG | + | chr6_2:56917874-56917893 | Msa0920990:CDS | 35.0% | |
| ACAGATTTCTTACCCATTTG+TGG | - | chr6_2:56917889-56917908 | None:intergenic | 35.0% | |
| AGAATGAGTAATATGATCGG+TGG | - | chr6_2:56917935-56917954 | None:intergenic | 35.0% | |
| CACAAGTGCAATCTTTGGTA+GGG | - | chr6_2:56917216-56917235 | None:intergenic | 40.0% | |
| GATTGCACAAGTGCAATCTT+TGG | - | chr6_2:56917221-56917240 | None:intergenic | 40.0% | |
| AGTCTTGGACAAAATTGGGA+GGG | - | chr6_2:56917368-56917387 | None:intergenic | 40.0% | |
| AAGTCTTGGACAAAATTGGG+AGG | - | chr6_2:56917369-56917388 | None:intergenic | 40.0% | |
| TTTCAGCAGTAGGATCAGAA+GGG | - | chr6_2:56917435-56917454 | None:intergenic | 40.0% | |
| ! | TTTTCAGCAGTAGGATCAGA+AGG | - | chr6_2:56917436-56917455 | None:intergenic | 40.0% |
| !!! | AGAGGTTGTTTTTCAGCAGT+AGG | - | chr6_2:56917445-56917464 | None:intergenic | 40.0% |
| !! | GAGACTTGTTTTCTCAAGCA+TGG | + | chr6_2:56917610-56917629 | Msa0920990:intron | 40.0% |
| ! | TTGTTCTTTTGCTGGAAACC+AGG | - | chr6_2:56917643-56917662 | None:intergenic | 40.0% |
| ! | AGTTTGTTCAGAGGCAGAAT+TGG | - | chr6_2:56917689-56917708 | None:intergenic | 40.0% |
| TTGTTGGTATTGTTCCTGGA+TGG | - | chr6_2:56917752-56917771 | None:intergenic | 40.0% | |
| TTGTGGAGCAATGTTAGTAG+TGG | - | chr6_2:56917809-56917828 | None:intergenic | 40.0% | |
| AGATTGAGAAAGGACAGAGT+TGG | - | chr6_2:56917842-56917861 | None:intergenic | 40.0% | |
| ACCCATTTGTGGAGATGAAA+TGG | - | chr6_2:56917878-56917897 | None:intergenic | 40.0% | |
| TGGGTAAGAAATCTGTCCTT+TGG | + | chr6_2:56917893-56917912 | Msa0920990:CDS | 40.0% | |
| GAAATCTGTCCTTTGGATCA+TGG | + | chr6_2:56917900-56917919 | Msa0920990:CDS | 40.0% | |
| CACAAGTGCAATCTTTGGTA+GGG | - | chr6_2:56917216-56917235 | None:intergenic | 40.0% | |
| GATTGCACAAGTGCAATCTT+TGG | - | chr6_2:56917221-56917240 | None:intergenic | 40.0% | |
| AGTCTTGGACAAAATTGGGA+GGG | - | chr6_2:56917368-56917387 | None:intergenic | 40.0% | |
| AAGTCTTGGACAAAATTGGG+AGG | - | chr6_2:56917369-56917388 | None:intergenic | 40.0% | |
| TTTCAGCAGTAGGATCAGAA+GGG | - | chr6_2:56917435-56917454 | None:intergenic | 40.0% | |
| ! | TTTTCAGCAGTAGGATCAGA+AGG | - | chr6_2:56917436-56917455 | None:intergenic | 40.0% |
| !!! | AGAGGTTGTTTTTCAGCAGT+AGG | - | chr6_2:56917445-56917464 | None:intergenic | 40.0% |
| !! | GAGACTTGTTTTCTCAAGCA+TGG | + | chr6_2:56917610-56917629 | Msa0920990:intron | 40.0% |
| ! | TTGTTCTTTTGCTGGAAACC+AGG | - | chr6_2:56917643-56917662 | None:intergenic | 40.0% |
| ! | AGTTTGTTCAGAGGCAGAAT+TGG | - | chr6_2:56917689-56917708 | None:intergenic | 40.0% |
| TTGTTGGTATTGTTCCTGGA+TGG | - | chr6_2:56917752-56917771 | None:intergenic | 40.0% | |
| TTGTGGAGCAATGTTAGTAG+TGG | - | chr6_2:56917809-56917828 | None:intergenic | 40.0% | |
| AGATTGAGAAAGGACAGAGT+TGG | - | chr6_2:56917842-56917861 | None:intergenic | 40.0% | |
| ACCCATTTGTGGAGATGAAA+TGG | - | chr6_2:56917878-56917897 | None:intergenic | 40.0% | |
| TGGGTAAGAAATCTGTCCTT+TGG | + | chr6_2:56917893-56917912 | Msa0920990:CDS | 40.0% | |
| GAAATCTGTCCTTTGGATCA+TGG | + | chr6_2:56917900-56917919 | Msa0920990:CDS | 40.0% | |
| AAGTGCAATCTTTGGTAGGG+CGG | - | chr6_2:56917213-56917232 | None:intergenic | 45.0% | |
| GCACAAGTGCAATCTTTGGT+AGG | - | chr6_2:56917217-56917236 | None:intergenic | 45.0% | |
| GTCTTGGACAAAATTGGGAG+GGG | - | chr6_2:56917367-56917386 | None:intergenic | 45.0% | |
| TCGTTCTTGACCTAACACCA+AGG | - | chr6_2:56917395-56917414 | None:intergenic | 45.0% | |
| CAGTAGGATCAGAAGGGATA+GGG | - | chr6_2:56917429-56917448 | None:intergenic | 45.0% | |
| ! | TTTACAAATGGTGGAGGTCG+TGG | + | chr6_2:56917487-56917506 | Msa0920990:intron | 45.0% |
| ! | TCTTTTGCTGGAAACCAGGA+GGG | - | chr6_2:56917639-56917658 | None:intergenic | 45.0% |
| ! | TTCTTTTGCTGGAAACCAGG+AGG | - | chr6_2:56917640-56917659 | None:intergenic | 45.0% |
| GTCCTTTGGATCATGGATAC+AGG | + | chr6_2:56917907-56917926 | Msa0920990:CDS | 45.0% | |
| CACCTGTATCCATGATCCAA+AGG | - | chr6_2:56917912-56917931 | None:intergenic | 45.0% | |
| AAGTGCAATCTTTGGTAGGG+CGG | - | chr6_2:56917213-56917232 | None:intergenic | 45.0% | |
| GCACAAGTGCAATCTTTGGT+AGG | - | chr6_2:56917217-56917236 | None:intergenic | 45.0% | |
| GTCTTGGACAAAATTGGGAG+GGG | - | chr6_2:56917367-56917386 | None:intergenic | 45.0% | |
| TCGTTCTTGACCTAACACCA+AGG | - | chr6_2:56917395-56917414 | None:intergenic | 45.0% | |
| CAGTAGGATCAGAAGGGATA+GGG | - | chr6_2:56917429-56917448 | None:intergenic | 45.0% | |
| ! | TTTACAAATGGTGGAGGTCG+TGG | + | chr6_2:56917487-56917506 | Msa0920990:intron | 45.0% |
| ! | TCTTTTGCTGGAAACCAGGA+GGG | - | chr6_2:56917639-56917658 | None:intergenic | 45.0% |
| ! | TTCTTTTGCTGGAAACCAGG+AGG | - | chr6_2:56917640-56917659 | None:intergenic | 45.0% |
| GTCCTTTGGATCATGGATAC+AGG | + | chr6_2:56917907-56917926 | Msa0920990:CDS | 45.0% | |
| CACCTGTATCCATGATCCAA+AGG | - | chr6_2:56917912-56917931 | None:intergenic | 45.0% | |
| TGTGCAATCCCTTGCACTTG+TGG | + | chr6_2:56917232-56917251 | Msa0920990:CDS | 50.0% | |
| AAGCAGCACCACAAGTGCAA+GGG | - | chr6_2:56917243-56917262 | None:intergenic | 50.0% | |
| GCAGTAGGATCAGAAGGGAT+AGG | - | chr6_2:56917430-56917449 | None:intergenic | 50.0% | |
| ! | AATGGTGGAGGTCGTGGAAA+AGG | + | chr6_2:56917493-56917512 | Msa0920990:intron | 50.0% |
| CAAAATAGAGGAAGGGGTCG+TGG | + | chr6_2:56917523-56917542 | Msa0920990:intron | 50.0% | |
| TGTGCAATCCCTTGCACTTG+TGG | + | chr6_2:56917232-56917251 | Msa0920990:CDS | 50.0% | |
| AAGCAGCACCACAAGTGCAA+GGG | - | chr6_2:56917243-56917262 | None:intergenic | 50.0% | |
| GCAGTAGGATCAGAAGGGAT+AGG | - | chr6_2:56917430-56917449 | None:intergenic | 50.0% | |
| ! | AATGGTGGAGGTCGTGGAAA+AGG | + | chr6_2:56917493-56917512 | Msa0920990:intron | 50.0% |
| CAAAATAGAGGAAGGGGTCG+TGG | + | chr6_2:56917523-56917542 | Msa0920990:intron | 50.0% | |
| GAAGCAGCACCACAAGTGCA+AGG | - | chr6_2:56917244-56917263 | None:intergenic | 55.0% | |
| AATAGAGGAAGGGGTCGTGG+TGG | + | chr6_2:56917526-56917545 | Msa0920990:intron | 55.0% | |
| CTCAAGCATGGATACCCTCC+TGG | + | chr6_2:56917622-56917641 | Msa0920990:intron | 55.0% | |
| !! | GAGTTGGCAGCAGCTTGTTG+TGG | - | chr6_2:56917826-56917845 | None:intergenic | 55.0% |
| GAAGCAGCACCACAAGTGCA+AGG | - | chr6_2:56917244-56917263 | None:intergenic | 55.0% | |
| AATAGAGGAAGGGGTCGTGG+TGG | + | chr6_2:56917526-56917545 | Msa0920990:intron | 55.0% | |
| CTCAAGCATGGATACCCTCC+TGG | + | chr6_2:56917622-56917641 | Msa0920990:intron | 55.0% | |
| !! | GAGTTGGCAGCAGCTTGTTG+TGG | - | chr6_2:56917826-56917845 | None:intergenic | 55.0% |
| CGAGTACCACTACGACCTCC+AGG | - | chr6_2:56917553-56917572 | None:intergenic | 60.0% | |
| CGAGTACCACTACGACCTCC+AGG | - | chr6_2:56917553-56917572 | None:intergenic | 60.0% | |
| GGTGGTCCTGGAGGTCGTAG+TGG | + | chr6_2:56917544-56917563 | Msa0920990:intron | 65.0% | |
| GGTGGTCCTGGAGGTCGTAG+TGG | + | chr6_2:56917544-56917563 | Msa0920990:intron | 65.0% | |
| GGAAGGGGTCGTGGTGGTCC+TGG | + | chr6_2:56917532-56917551 | Msa0920990:intron | 70.0% | |
| AGGGGTCGTGGTGGTCCTGG+AGG | + | chr6_2:56917535-56917554 | Msa0920990:intron | 70.0% | |
| GGAAGGGGTCGTGGTGGTCC+TGG | + | chr6_2:56917532-56917551 | Msa0920990:intron | 70.0% | |
| AGGGGTCGTGGTGGTCCTGG+AGG | + | chr6_2:56917535-56917554 | Msa0920990:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 56917187 | 56917999 | 56917187 | ID=Msa0920990;Name=Msa0920990 |
| chr6_2 | mRNA | 56917187 | 56917999 | 56917187 | ID=Msa0920990-mRNA-1;Parent=Msa0920990;Name=Msa0920990-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|0|0|2|0|151 |
| chr6_2 | exon | 56917187 | 56917396 | 56917187 | ID=Msa0920990-mRNA-1:exon:8544;Parent=Msa0920990-mRNA-1 |
| chr6_2 | exon | 56917757 | 56917999 | 56917757 | ID=Msa0920990-mRNA-1:exon:8545;Parent=Msa0920990-mRNA-1 |
| chr6_2 | CDS | 56917187 | 56917396 | 56917187 | ID=Msa0920990-mRNA-1:cds;Parent=Msa0920990-mRNA-1 |
| chr6_2 | CDS | 56917757 | 56917999 | 56917757 | ID=Msa0920990-mRNA-1:cds;Parent=Msa0920990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
