AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1025370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 13 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTATTGGAGAAGTTTCA+TGG 0.356631 7_1:-55875509 Msa1025370:CDS
AAAATCCAGCTTTCGAGATA+TGG 0.371968 7_1:+55875585 None:intergenic
TGTTGACTTCAGCGAACTTT+CGG 0.382328 7_1:-55875623 Msa1025370:CDS
TTTGAACAAGTAGTGGTGAT+TGG 0.419006 7_1:+55875482 None:intergenic
TTGAACAAGTAGTGGTGATT+GGG 0.499146 7_1:+55875483 None:intergenic
TGATACCATATCTCGAAAGC+TGG 0.511555 7_1:-55875590 Msa1025370:CDS
TTTCTGGTGTTTGCAAGGAG+TGG 0.522122 7_1:-55875546 Msa1025370:CDS
CTGGTGTTTGCAAGGAGTGG+AGG 0.526377 7_1:-55875543 Msa1025370:CDS
AATTCAGAGCAAGGGAGTGA+CGG 0.544318 7_1:-55877747 Msa1025370:CDS
GTGACGGAGATGATTCTAAG+AGG 0.579615 7_1:-55877731 Msa1025370:intron
GAAGTTGTTTGAACAAGTAG+TGG 0.607939 7_1:+55875475 None:intergenic
CTCACAAAGAATTCAGAGCA+AGG 0.609873 7_1:-55877756 Msa1025370:CDS
TCACAAAGAATTCAGAGCAA+GGG 0.646539 7_1:-55877755 Msa1025370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATAGAATTAGAAATTA+TGG + chr7_1:55876232-55876251 None:intergenic 10.0%
!!! TGAAATATTACATATTTTTA+GGG - chr7_1:55876261-55876280 Msa1025370:intron 10.0%
!! ATTAATAGAATTAGAAATTA+TGG + chr7_1:55876232-55876251 None:intergenic 10.0%
!!! TGAAATATTACATATTTTTA+GGG - chr7_1:55876261-55876280 Msa1025370:intron 10.0%
!!! GTGAAATATTACATATTTTT+AGG - chr7_1:55876260-55876279 Msa1025370:intron 15.0%
!!! AGTTTATTCTTTTTTCTTTT+CGG - chr7_1:55876304-55876323 Msa1025370:intron 15.0%
!!! TAGTTTTTTAGTTTTTTCTT+TGG + chr7_1:55876349-55876368 None:intergenic 15.0%
!! GAAAAAACTAAAAAACTAAA+TGG - chr7_1:55876351-55876370 Msa1025370:intron 15.0%
!!! TATATAAAAGCAATTTTAGT+GGG + chr7_1:55876594-55876613 None:intergenic 15.0%
!!! ATATATAAAAGCAATTTTAG+TGG + chr7_1:55876595-55876614 None:intergenic 15.0%
!!! GTGAAATATTACATATTTTT+AGG - chr7_1:55876260-55876279 Msa1025370:intron 15.0%
!!! AGTTTATTCTTTTTTCTTTT+CGG - chr7_1:55876304-55876323 Msa1025370:intron 15.0%
!!! TAGTTTTTTAGTTTTTTCTT+TGG + chr7_1:55876349-55876368 None:intergenic 15.0%
!! GAAAAAACTAAAAAACTAAA+TGG - chr7_1:55876351-55876370 Msa1025370:intron 15.0%
!!! TATATAAAAGCAATTTTAGT+GGG + chr7_1:55876594-55876613 None:intergenic 15.0%
!!! ATATATAAAAGCAATTTTAG+TGG + chr7_1:55876595-55876614 None:intergenic 15.0%
!!! ATTACATGATTGTTTTAGAT+TGG - chr7_1:55875788-55875807 Msa1025370:intron 20.0%
!!! TTACATGATTGTTTTAGATT+GGG - chr7_1:55875789-55875808 Msa1025370:intron 20.0%
!!! GTCTTTCAATTAAATTTTGT+GGG - chr7_1:55875878-55875897 Msa1025370:intron 20.0%
!!! TCTTTCAATTAAATTTTGTG+GGG - chr7_1:55875879-55875898 Msa1025370:intron 20.0%
!! ACTAATTATAAGCATTACTT+TGG + chr7_1:55876164-55876183 None:intergenic 20.0%
!! AAAGTAATGCTTATAATTAG+TGG - chr7_1:55876163-55876182 Msa1025370:intron 20.0%
!! AAGTAATGCTTATAATTAGT+GGG - chr7_1:55876164-55876183 Msa1025370:intron 20.0%
!! AAGAAAAAAGAATAAACTGA+AGG + chr7_1:55876302-55876321 None:intergenic 20.0%
!! AATATAAAGAAGCCAAAAAT+AGG - chr7_1:55876464-55876483 Msa1025370:intron 20.0%
!!! TTAGTTTTGTCATAATATGA+GGG + chr7_1:55876515-55876534 None:intergenic 20.0%
!!! TTTAGTTTTGTCATAATATG+AGG + chr7_1:55876516-55876535 None:intergenic 20.0%
!!! ATATAAAAGCAATTTTAGTG+GGG + chr7_1:55876593-55876612 None:intergenic 20.0%
!!! CTCTAAAATTCATTTATACA+TGG + chr7_1:55876620-55876639 None:intergenic 20.0%
!! ATAGATGATTAAATTGATGT+TGG + chr7_1:55877019-55877038 None:intergenic 20.0%
!!! TTTTTCCAATATCATATAGA+TGG - chr7_1:55877283-55877302 Msa1025370:intron 20.0%
!!! TGCACTTTTATTATTAACAT+TGG - chr7_1:55877482-55877501 Msa1025370:intron 20.0%
!!! GCACTTTTATTATTAACATT+GGG - chr7_1:55877483-55877502 Msa1025370:intron 20.0%
!!! ATTACATGATTGTTTTAGAT+TGG - chr7_1:55875788-55875807 Msa1025370:intron 20.0%
!!! TTACATGATTGTTTTAGATT+GGG - chr7_1:55875789-55875808 Msa1025370:intron 20.0%
!!! GTCTTTCAATTAAATTTTGT+GGG - chr7_1:55875878-55875897 Msa1025370:intron 20.0%
!!! TCTTTCAATTAAATTTTGTG+GGG - chr7_1:55875879-55875898 Msa1025370:intron 20.0%
!! ACTAATTATAAGCATTACTT+TGG + chr7_1:55876164-55876183 None:intergenic 20.0%
!! AAAGTAATGCTTATAATTAG+TGG - chr7_1:55876163-55876182 Msa1025370:intron 20.0%
!! AAGTAATGCTTATAATTAGT+GGG - chr7_1:55876164-55876183 Msa1025370:intron 20.0%
!! AAGAAAAAAGAATAAACTGA+AGG + chr7_1:55876302-55876321 None:intergenic 20.0%
!! AATATAAAGAAGCCAAAAAT+AGG - chr7_1:55876464-55876483 Msa1025370:intron 20.0%
!!! TTAGTTTTGTCATAATATGA+GGG + chr7_1:55876515-55876534 None:intergenic 20.0%
!!! TTTAGTTTTGTCATAATATG+AGG + chr7_1:55876516-55876535 None:intergenic 20.0%
!!! ATATAAAAGCAATTTTAGTG+GGG + chr7_1:55876593-55876612 None:intergenic 20.0%
!!! CTCTAAAATTCATTTATACA+TGG + chr7_1:55876620-55876639 None:intergenic 20.0%
!! ATAGATGATTAAATTGATGT+TGG + chr7_1:55877019-55877038 None:intergenic 20.0%
!!! TTTTTCCAATATCATATAGA+TGG - chr7_1:55877283-55877302 Msa1025370:intron 20.0%
!!! TGCACTTTTATTATTAACAT+TGG - chr7_1:55877482-55877501 Msa1025370:intron 20.0%
!!! GCACTTTTATTATTAACATT+GGG - chr7_1:55877483-55877502 Msa1025370:intron 20.0%
! ACAATCTCATGAAACAATAT+AGG + chr7_1:55875628-55875647 None:intergenic 25.0%
!!! TAATTTTAACCTATCAGTCA+TGG + chr7_1:55875716-55875735 None:intergenic 25.0%
!! CGTCTTTCAATTAAATTTTG+TGG - chr7_1:55875877-55875896 Msa1025370:intron 25.0%
!!! ATTACTTTGGCTTTATTTCT+AGG + chr7_1:55876151-55876170 None:intergenic 25.0%
! AAAACTAAATGGACATTCTT+AGG - chr7_1:55876362-55876381 Msa1025370:intron 25.0%
!!! GCTTGTTTTAAATTTCTGAA+GGG + chr7_1:55876761-55876780 None:intergenic 25.0%
! AAGAAATATGATACTTGCAA+GGG + chr7_1:55876810-55876829 None:intergenic 25.0%
! TAAGAAATATGATACTTGCA+AGG + chr7_1:55876811-55876830 None:intergenic 25.0%
! TATAATAGAATAAACCCATG+GGG + chr7_1:55876880-55876899 None:intergenic 25.0%
! GTATAATAGAATAAACCCAT+GGG + chr7_1:55876881-55876900 None:intergenic 25.0%
! TGTATAATAGAATAAACCCA+TGG + chr7_1:55876882-55876901 None:intergenic 25.0%
! TATTGTTGGAAATCAAAGTA+GGG + chr7_1:55876961-55876980 None:intergenic 25.0%
!!! TTGATGTTGGAATTATTTTG+AGG + chr7_1:55877006-55877025 None:intergenic 25.0%
!!! TATACAATTAAAGTGTCGTT+TGG - chr7_1:55877042-55877061 Msa1025370:intron 25.0%
!! TCAAAGATTTATGGGTTTTA+TGG - chr7_1:55877243-55877262 Msa1025370:intron 25.0%
!!! TTATGGGTTTTATGGATTTA+TGG - chr7_1:55877251-55877270 Msa1025370:intron 25.0%
!!! TATGGGTTTTATGGATTTAT+GGG - chr7_1:55877252-55877271 Msa1025370:intron 25.0%
! ATCAACCATCTATATGATAT+TGG + chr7_1:55877291-55877310 None:intergenic 25.0%
!! TTGAGCCAATATTTTCAAAT+TGG - chr7_1:55877312-55877331 Msa1025370:intron 25.0%
! TAATATCATAGAAAATCGTG+AGG + chr7_1:55877438-55877457 None:intergenic 25.0%
! GGAGAGTTCAAAAAATTTAT+TGG - chr7_1:55877662-55877681 Msa1025370:intron 25.0%
! AATTTATTGGAGAAGTTTCA+TGG - chr7_1:55877675-55877694 Msa1025370:intron 25.0%
! ACAATCTCATGAAACAATAT+AGG + chr7_1:55875628-55875647 None:intergenic 25.0%
!!! TAATTTTAACCTATCAGTCA+TGG + chr7_1:55875716-55875735 None:intergenic 25.0%
!! CGTCTTTCAATTAAATTTTG+TGG - chr7_1:55875877-55875896 Msa1025370:intron 25.0%
!!! ATTACTTTGGCTTTATTTCT+AGG + chr7_1:55876151-55876170 None:intergenic 25.0%
! AAAACTAAATGGACATTCTT+AGG - chr7_1:55876362-55876381 Msa1025370:intron 25.0%
!!! GCTTGTTTTAAATTTCTGAA+GGG + chr7_1:55876761-55876780 None:intergenic 25.0%
! AAGAAATATGATACTTGCAA+GGG + chr7_1:55876810-55876829 None:intergenic 25.0%
! TAAGAAATATGATACTTGCA+AGG + chr7_1:55876811-55876830 None:intergenic 25.0%
! TATAATAGAATAAACCCATG+GGG + chr7_1:55876880-55876899 None:intergenic 25.0%
! GTATAATAGAATAAACCCAT+GGG + chr7_1:55876881-55876900 None:intergenic 25.0%
! TGTATAATAGAATAAACCCA+TGG + chr7_1:55876882-55876901 None:intergenic 25.0%
! TATTGTTGGAAATCAAAGTA+GGG + chr7_1:55876961-55876980 None:intergenic 25.0%
!!! TTGATGTTGGAATTATTTTG+AGG + chr7_1:55877006-55877025 None:intergenic 25.0%
!!! TATACAATTAAAGTGTCGTT+TGG - chr7_1:55877042-55877061 Msa1025370:intron 25.0%
!! TCAAAGATTTATGGGTTTTA+TGG - chr7_1:55877243-55877262 Msa1025370:intron 25.0%
!!! TTATGGGTTTTATGGATTTA+TGG - chr7_1:55877251-55877270 Msa1025370:intron 25.0%
!!! TATGGGTTTTATGGATTTAT+GGG - chr7_1:55877252-55877271 Msa1025370:intron 25.0%
! ATCAACCATCTATATGATAT+TGG + chr7_1:55877291-55877310 None:intergenic 25.0%
!! TTGAGCCAATATTTTCAAAT+TGG - chr7_1:55877312-55877331 Msa1025370:intron 25.0%
! TAATATCATAGAAAATCGTG+AGG + chr7_1:55877438-55877457 None:intergenic 25.0%
! GGAGAGTTCAAAAAATTTAT+TGG - chr7_1:55877662-55877681 Msa1025370:intron 25.0%
! AATTTATTGGAGAAGTTTCA+TGG - chr7_1:55877675-55877694 Msa1025370:intron 25.0%
TTCAACAAAGCAAAACAATG+TGG + chr7_1:55875754-55875773 None:intergenic 30.0%
ATTACTTAGGCTATGTCTTT+AGG + chr7_1:55875843-55875862 None:intergenic 30.0%
AGTTTCGATTATAGTGACTA+GGG + chr7_1:55876051-55876070 None:intergenic 30.0%
TAGTTTCGATTATAGTGACT+AGG + chr7_1:55876052-55876071 None:intergenic 30.0%
TCACTATAATCGAAACTACT+TGG - chr7_1:55876054-55876073 Msa1025370:intron 30.0%
! TTTTCTTTTCGGTACAAAAG+AGG - chr7_1:55876315-55876334 Msa1025370:intron 30.0%
! TTTCTTTTCGGTACAAAAGA+GGG - chr7_1:55876316-55876335 Msa1025370:intron 30.0%
! TTCTTTTTACGATATGTCCA+GGG + chr7_1:55876396-55876415 None:intergenic 30.0%
CTTTAGTTGTACTAATGTTG+AGG + chr7_1:55876443-55876462 None:intergenic 30.0%
CTCAACATTAGTACAACTAA+AGG - chr7_1:55876441-55876460 Msa1025370:intron 30.0%
! TTTAAATTTCTGAAGGGAGA+TGG + chr7_1:55876755-55876774 None:intergenic 30.0%
!!! GGCTTGTTTTAAATTTCTGA+AGG + chr7_1:55876762-55876781 None:intergenic 30.0%
ATTGTTGGAAATCAAAGTAG+GGG + chr7_1:55876960-55876979 None:intergenic 30.0%
GTATTGTTGGAAATCAAAGT+AGG + chr7_1:55876962-55876981 None:intergenic 30.0%
AATGATGACACTTGTATTGT+TGG + chr7_1:55876975-55876994 None:intergenic 30.0%
TATTTCAAGCATCAACTAGA+TGG - chr7_1:55877201-55877220 Msa1025370:intron 30.0%
AGCAGAACTTCAAAGATTTA+TGG - chr7_1:55877234-55877253 Msa1025370:intron 30.0%
GCAGAACTTCAAAGATTTAT+GGG - chr7_1:55877235-55877254 Msa1025370:intron 30.0%
! AGCCAATATTTTCAAATTGG+TGG - chr7_1:55877315-55877334 Msa1025370:intron 30.0%
CACCACCAATTTGAAAATAT+TGG + chr7_1:55877320-55877339 None:intergenic 30.0%
! CAATTCTGGTTATTCATCTA+TGG + chr7_1:55877347-55877366 None:intergenic 30.0%
! GACGATCTATTTCAATTTTC+TGG - chr7_1:55877622-55877641 Msa1025370:intron 30.0%
TTCAACAAAGCAAAACAATG+TGG + chr7_1:55875754-55875773 None:intergenic 30.0%
ATTACTTAGGCTATGTCTTT+AGG + chr7_1:55875843-55875862 None:intergenic 30.0%
AGTTTCGATTATAGTGACTA+GGG + chr7_1:55876051-55876070 None:intergenic 30.0%
TAGTTTCGATTATAGTGACT+AGG + chr7_1:55876052-55876071 None:intergenic 30.0%
TCACTATAATCGAAACTACT+TGG - chr7_1:55876054-55876073 Msa1025370:intron 30.0%
! TTTTCTTTTCGGTACAAAAG+AGG - chr7_1:55876315-55876334 Msa1025370:intron 30.0%
! TTTCTTTTCGGTACAAAAGA+GGG - chr7_1:55876316-55876335 Msa1025370:intron 30.0%
! TTCTTTTTACGATATGTCCA+GGG + chr7_1:55876396-55876415 None:intergenic 30.0%
CTTTAGTTGTACTAATGTTG+AGG + chr7_1:55876443-55876462 None:intergenic 30.0%
CTCAACATTAGTACAACTAA+AGG - chr7_1:55876441-55876460 Msa1025370:intron 30.0%
! TTTAAATTTCTGAAGGGAGA+TGG + chr7_1:55876755-55876774 None:intergenic 30.0%
!!! GGCTTGTTTTAAATTTCTGA+AGG + chr7_1:55876762-55876781 None:intergenic 30.0%
ATTGTTGGAAATCAAAGTAG+GGG + chr7_1:55876960-55876979 None:intergenic 30.0%
GTATTGTTGGAAATCAAAGT+AGG + chr7_1:55876962-55876981 None:intergenic 30.0%
AATGATGACACTTGTATTGT+TGG + chr7_1:55876975-55876994 None:intergenic 30.0%
TATTTCAAGCATCAACTAGA+TGG - chr7_1:55877201-55877220 Msa1025370:intron 30.0%
AGCAGAACTTCAAAGATTTA+TGG - chr7_1:55877234-55877253 Msa1025370:intron 30.0%
GCAGAACTTCAAAGATTTAT+GGG - chr7_1:55877235-55877254 Msa1025370:intron 30.0%
! AGCCAATATTTTCAAATTGG+TGG - chr7_1:55877315-55877334 Msa1025370:intron 30.0%
CACCACCAATTTGAAAATAT+TGG + chr7_1:55877320-55877339 None:intergenic 30.0%
! CAATTCTGGTTATTCATCTA+TGG + chr7_1:55877347-55877366 None:intergenic 30.0%
! GACGATCTATTTCAATTTTC+TGG - chr7_1:55877622-55877641 Msa1025370:intron 30.0%
TCACAAAGAATTCAGAGCAA+GGG - chr7_1:55875429-55875448 Msa1025370:CDS 35.0%
! TTTTAGATTGGGTGTTAGCT+AGG - chr7_1:55875800-55875819 Msa1025370:intron 35.0%
TTTAGATTGGGTGTTAGCTA+GGG - chr7_1:55875801-55875820 Msa1025370:intron 35.0%
TAGCCTAAGTAATGCTCATT+TGG - chr7_1:55875850-55875869 Msa1025370:intron 35.0%
AAGCCAAATGAGCATTACTT+AGG + chr7_1:55875856-55875875 None:intergenic 35.0%
ACCTACATCTTGTAATGTGT+GGG + chr7_1:55875973-55875992 None:intergenic 35.0%
GTTTCGATTATAGTGACTAG+GGG + chr7_1:55876050-55876069 None:intergenic 35.0%
!!! ACCTTACAAACTGGTTTTGT+GGG - chr7_1:55876195-55876214 Msa1025370:intron 35.0%
! CTTCTTTTTACGATATGTCC+AGG + chr7_1:55876397-55876416 None:intergenic 35.0%
! GTTGATTGAGAGCCTATTTT+TGG + chr7_1:55876479-55876498 None:intergenic 35.0%
! TAGGCTCTCAATCAACATTT+TGG - chr7_1:55876483-55876502 Msa1025370:intron 35.0%
! AGGCTCTCAATCAACATTTT+GGG - chr7_1:55876484-55876503 Msa1025370:intron 35.0%
GTTCTCTCCTATCAAAACTA+AGG - chr7_1:55876664-55876683 Msa1025370:intron 35.0%
!!! GCATGTACCTTAGTTTTGAT+AGG + chr7_1:55876674-55876693 None:intergenic 35.0%
GATGGATCAAACGTTACATT+AGG + chr7_1:55876737-55876756 None:intergenic 35.0%
AAATATGATACTTGCAAGGG+AGG + chr7_1:55876807-55876826 None:intergenic 35.0%
TTGTTGGAAATCAAAGTAGG+GGG + chr7_1:55876959-55876978 None:intergenic 35.0%
CTCAACTGAGTCTGTAAATA+AGG + chr7_1:55877110-55877129 None:intergenic 35.0%
CTTATTTACAGACTCAGTTG+AGG - chr7_1:55877108-55877127 Msa1025370:intron 35.0%
! TATGACGTTTTGCACTATTG+AGG - chr7_1:55877158-55877177 Msa1025370:intron 35.0%
TCTGGTTATTCATCTATGGT+TGG + chr7_1:55877343-55877362 None:intergenic 35.0%
!! ACCAGAATTGCTTTTCATTG+TGG - chr7_1:55877357-55877376 Msa1025370:intron 35.0%
ACCACAATGAAAAGCAATTC+TGG + chr7_1:55877361-55877380 None:intergenic 35.0%
TCATAGAAAATCGTGAGGTA+AGG + chr7_1:55877433-55877452 None:intergenic 35.0%
ATGACAACAATGACAATGCT+AGG + chr7_1:55877514-55877533 None:intergenic 35.0%
GTCATTGTTGTCATTGTTTC+AGG - chr7_1:55877520-55877539 Msa1025370:intron 35.0%
AAAATCCAGCTTTCGAGATA+TGG + chr7_1:55877602-55877621 None:intergenic 35.0%
!! TCAATTTTCTGGTGTTTGCA+AGG - chr7_1:55877633-55877652 Msa1025370:intron 35.0%
TTGAACAAGTAGTGGTGATT+GGG + chr7_1:55877704-55877723 None:intergenic 35.0%
TTTGAACAAGTAGTGGTGAT+TGG + chr7_1:55877705-55877724 None:intergenic 35.0%
GAAGTTGTTTGAACAAGTAG+TGG + chr7_1:55877712-55877731 None:intergenic 35.0%
TCACAAAGAATTCAGAGCAA+GGG - chr7_1:55875429-55875448 Msa1025370:CDS 35.0%
! TTTTAGATTGGGTGTTAGCT+AGG - chr7_1:55875800-55875819 Msa1025370:intron 35.0%
TTTAGATTGGGTGTTAGCTA+GGG - chr7_1:55875801-55875820 Msa1025370:intron 35.0%
TAGCCTAAGTAATGCTCATT+TGG - chr7_1:55875850-55875869 Msa1025370:intron 35.0%
AAGCCAAATGAGCATTACTT+AGG + chr7_1:55875856-55875875 None:intergenic 35.0%
ACCTACATCTTGTAATGTGT+GGG + chr7_1:55875973-55875992 None:intergenic 35.0%
GTTTCGATTATAGTGACTAG+GGG + chr7_1:55876050-55876069 None:intergenic 35.0%
!!! ACCTTACAAACTGGTTTTGT+GGG - chr7_1:55876195-55876214 Msa1025370:intron 35.0%
! CTTCTTTTTACGATATGTCC+AGG + chr7_1:55876397-55876416 None:intergenic 35.0%
! GTTGATTGAGAGCCTATTTT+TGG + chr7_1:55876479-55876498 None:intergenic 35.0%
! TAGGCTCTCAATCAACATTT+TGG - chr7_1:55876483-55876502 Msa1025370:intron 35.0%
! AGGCTCTCAATCAACATTTT+GGG - chr7_1:55876484-55876503 Msa1025370:intron 35.0%
GTTCTCTCCTATCAAAACTA+AGG - chr7_1:55876664-55876683 Msa1025370:intron 35.0%
!!! GCATGTACCTTAGTTTTGAT+AGG + chr7_1:55876674-55876693 None:intergenic 35.0%
GATGGATCAAACGTTACATT+AGG + chr7_1:55876737-55876756 None:intergenic 35.0%
AAATATGATACTTGCAAGGG+AGG + chr7_1:55876807-55876826 None:intergenic 35.0%
TTGTTGGAAATCAAAGTAGG+GGG + chr7_1:55876959-55876978 None:intergenic 35.0%
CTCAACTGAGTCTGTAAATA+AGG + chr7_1:55877110-55877129 None:intergenic 35.0%
CTTATTTACAGACTCAGTTG+AGG - chr7_1:55877108-55877127 Msa1025370:intron 35.0%
! TATGACGTTTTGCACTATTG+AGG - chr7_1:55877158-55877177 Msa1025370:intron 35.0%
TCTGGTTATTCATCTATGGT+TGG + chr7_1:55877343-55877362 None:intergenic 35.0%
!! ACCAGAATTGCTTTTCATTG+TGG - chr7_1:55877357-55877376 Msa1025370:intron 35.0%
ACCACAATGAAAAGCAATTC+TGG + chr7_1:55877361-55877380 None:intergenic 35.0%
TCATAGAAAATCGTGAGGTA+AGG + chr7_1:55877433-55877452 None:intergenic 35.0%
ATGACAACAATGACAATGCT+AGG + chr7_1:55877514-55877533 None:intergenic 35.0%
GTCATTGTTGTCATTGTTTC+AGG - chr7_1:55877520-55877539 Msa1025370:intron 35.0%
AAAATCCAGCTTTCGAGATA+TGG + chr7_1:55877602-55877621 None:intergenic 35.0%
!! TCAATTTTCTGGTGTTTGCA+AGG - chr7_1:55877633-55877652 Msa1025370:intron 35.0%
TTGAACAAGTAGTGGTGATT+GGG + chr7_1:55877704-55877723 None:intergenic 35.0%
TTTGAACAAGTAGTGGTGAT+TGG + chr7_1:55877705-55877724 None:intergenic 35.0%
GAAGTTGTTTGAACAAGTAG+TGG + chr7_1:55877712-55877731 None:intergenic 35.0%
CTCACAAAGAATTCAGAGCA+AGG - chr7_1:55875428-55875447 Msa1025370:CDS 40.0%
TCCTCAATGATCGTCAAGTA+CGG - chr7_1:55875484-55875503 Msa1025370:CDS 40.0%
TTAGATTGGGTGTTAGCTAG+GGG - chr7_1:55875802-55875821 Msa1025370:intron 40.0%
TCCTGATCGCATATCTAAGA+TGG - chr7_1:55875913-55875932 Msa1025370:intron 40.0%
ACCATCTTAGATATGCGATC+AGG + chr7_1:55875917-55875936 None:intergenic 40.0%
ACCCACACATTACAAGATGT+AGG - chr7_1:55875969-55875988 Msa1025370:intron 40.0%
CACCTACATCTTGTAATGTG+TGG + chr7_1:55875974-55875993 None:intergenic 40.0%
GATTATAGTGACTAGGGGAA+GGG + chr7_1:55876045-55876064 None:intergenic 40.0%
ATCTCATTGCACCCAGAATA+AGG + chr7_1:55876110-55876129 None:intergenic 40.0%
GCATTTCTCACCTTACAAAC+TGG - chr7_1:55876186-55876205 Msa1025370:intron 40.0%
!!! CACCTTACAAACTGGTTTTG+TGG - chr7_1:55876194-55876213 Msa1025370:intron 40.0%
!!! CCTTACAAACTGGTTTTGTG+GGG - chr7_1:55876196-55876215 Msa1025370:intron 40.0%
AACTGAAGGCAAGCATAACA+TGG + chr7_1:55876288-55876307 None:intergenic 40.0%
AGTCTATGAAGCTCACTATG+AGG - chr7_1:55876415-55876434 Msa1025370:intron 40.0%
! GTGGCATATTTGTCGTCTTT+TGG + chr7_1:55876554-55876573 None:intergenic 40.0%
CAAATATGCCACACCAAAAC+AGG - chr7_1:55876562-55876581 Msa1025370:intron 40.0%
! ACTTTTCATGCCGAAATCTG+GGG + chr7_1:55876696-55876715 None:intergenic 40.0%
! CACTTTTCATGCCGAAATCT+GGG + chr7_1:55876697-55876716 None:intergenic 40.0%
! ACACTTTTCATGCCGAAATC+TGG + chr7_1:55876698-55876717 None:intergenic 40.0%
! GGAGAGATGTAATGATGATG+AGG + chr7_1:55876783-55876802 None:intergenic 40.0%
ACCAATATAGATAGTCCCCA+TGG - chr7_1:55876862-55876881 Msa1025370:intron 40.0%
CCAATATAGATAGTCCCCAT+GGG - chr7_1:55876863-55876882 Msa1025370:intron 40.0%
! GTTTGGTTGTTTCGTTGTGT+GGG - chr7_1:55877059-55877078 Msa1025370:intron 40.0%
!! TGTTGACTTCAGCGAACTTT+CGG - chr7_1:55877561-55877580 Msa1025370:intron 40.0%
TGATACCATATCTCGAAAGC+TGG - chr7_1:55877594-55877613 Msa1025370:intron 40.0%
CTCACAAAGAATTCAGAGCA+AGG - chr7_1:55875428-55875447 Msa1025370:CDS 40.0%
TCCTCAATGATCGTCAAGTA+CGG - chr7_1:55875484-55875503 Msa1025370:CDS 40.0%
TTAGATTGGGTGTTAGCTAG+GGG - chr7_1:55875802-55875821 Msa1025370:intron 40.0%
TCCTGATCGCATATCTAAGA+TGG - chr7_1:55875913-55875932 Msa1025370:intron 40.0%
ACCATCTTAGATATGCGATC+AGG + chr7_1:55875917-55875936 None:intergenic 40.0%
ACCCACACATTACAAGATGT+AGG - chr7_1:55875969-55875988 Msa1025370:intron 40.0%
CACCTACATCTTGTAATGTG+TGG + chr7_1:55875974-55875993 None:intergenic 40.0%
GATTATAGTGACTAGGGGAA+GGG + chr7_1:55876045-55876064 None:intergenic 40.0%
ATCTCATTGCACCCAGAATA+AGG + chr7_1:55876110-55876129 None:intergenic 40.0%
GCATTTCTCACCTTACAAAC+TGG - chr7_1:55876186-55876205 Msa1025370:intron 40.0%
!!! CACCTTACAAACTGGTTTTG+TGG - chr7_1:55876194-55876213 Msa1025370:intron 40.0%
!!! CCTTACAAACTGGTTTTGTG+GGG - chr7_1:55876196-55876215 Msa1025370:intron 40.0%
AACTGAAGGCAAGCATAACA+TGG + chr7_1:55876288-55876307 None:intergenic 40.0%
AGTCTATGAAGCTCACTATG+AGG - chr7_1:55876415-55876434 Msa1025370:intron 40.0%
! GTGGCATATTTGTCGTCTTT+TGG + chr7_1:55876554-55876573 None:intergenic 40.0%
CAAATATGCCACACCAAAAC+AGG - chr7_1:55876562-55876581 Msa1025370:intron 40.0%
! ACTTTTCATGCCGAAATCTG+GGG + chr7_1:55876696-55876715 None:intergenic 40.0%
! CACTTTTCATGCCGAAATCT+GGG + chr7_1:55876697-55876716 None:intergenic 40.0%
! ACACTTTTCATGCCGAAATC+TGG + chr7_1:55876698-55876717 None:intergenic 40.0%
! GGAGAGATGTAATGATGATG+AGG + chr7_1:55876783-55876802 None:intergenic 40.0%
ACCAATATAGATAGTCCCCA+TGG - chr7_1:55876862-55876881 Msa1025370:intron 40.0%
CCAATATAGATAGTCCCCAT+GGG - chr7_1:55876863-55876882 Msa1025370:intron 40.0%
! GTTTGGTTGTTTCGTTGTGT+GGG - chr7_1:55877059-55877078 Msa1025370:intron 40.0%
!! TGTTGACTTCAGCGAACTTT+CGG - chr7_1:55877561-55877580 Msa1025370:intron 40.0%
TGATACCATATCTCGAAAGC+TGG - chr7_1:55877594-55877613 Msa1025370:intron 40.0%
AATTCAGAGCAAGGGAGTGA+CGG - chr7_1:55875437-55875456 Msa1025370:CDS 45.0%
! GTGACGGAGATGATTCTAAG+AGG - chr7_1:55875453-55875472 Msa1025370:CDS 45.0%
ACCGTACTTGACGATCATTG+AGG + chr7_1:55875488-55875507 None:intergenic 45.0%
GCAGTTGAACCATGACTGAT+AGG - chr7_1:55875704-55875723 Msa1025370:intron 45.0%
CGATTATAGTGACTAGGGGA+AGG + chr7_1:55876046-55876065 None:intergenic 45.0%
ACTACTTGGAGCTTCCTTCA+TGG - chr7_1:55876068-55876087 Msa1025370:intron 45.0%
TCCAACGCCTTCCTTATTCT+GGG - chr7_1:55876096-55876115 Msa1025370:intron 45.0%
CATTGCACCCAGAATAAGGA+AGG + chr7_1:55876106-55876125 None:intergenic 45.0%
CCCCACAAAACCAGTTTGTA+AGG + chr7_1:55876199-55876218 None:intergenic 45.0%
!!! ACAAACTGGTTTTGTGGGGT+TGG - chr7_1:55876200-55876219 Msa1025370:intron 45.0%
!!! CAAACTGGTTTTGTGGGGTT+GGG - chr7_1:55876201-55876220 Msa1025370:intron 45.0%
!! TAGTGGGGTGTTTCCTGTTT+TGG + chr7_1:55876578-55876597 None:intergenic 45.0%
AAGGTACATGCCCCAGATTT+CGG - chr7_1:55876683-55876702 Msa1025370:intron 45.0%
TATGATACTTGCAAGGGAGG+TGG + chr7_1:55876804-55876823 None:intergenic 45.0%
TTAAGCTTCATCCATCCACC+AGG - chr7_1:55876828-55876847 Msa1025370:intron 45.0%
TAAGCTTCATCCATCCACCA+GGG - chr7_1:55876829-55876848 Msa1025370:intron 45.0%
!! TATTGGTTCTAAGAGACCCC+TGG + chr7_1:55876849-55876868 None:intergenic 45.0%
CCCATGGGGACTATCTATAT+TGG + chr7_1:55876866-55876885 None:intergenic 45.0%
! CGTTTGGTTGTTTCGTTGTG+TGG - chr7_1:55877058-55877077 Msa1025370:intron 45.0%
TTCGTTGTGTGGGATTGTGA+TGG - chr7_1:55877069-55877088 Msa1025370:intron 45.0%
! TTTCTGGTGTTTGCAAGGAG+TGG - chr7_1:55877638-55877657 Msa1025370:intron 45.0%
AATTCAGAGCAAGGGAGTGA+CGG - chr7_1:55875437-55875456 Msa1025370:CDS 45.0%
! GTGACGGAGATGATTCTAAG+AGG - chr7_1:55875453-55875472 Msa1025370:CDS 45.0%
ACCGTACTTGACGATCATTG+AGG + chr7_1:55875488-55875507 None:intergenic 45.0%
GCAGTTGAACCATGACTGAT+AGG - chr7_1:55875704-55875723 Msa1025370:intron 45.0%
CGATTATAGTGACTAGGGGA+AGG + chr7_1:55876046-55876065 None:intergenic 45.0%
ACTACTTGGAGCTTCCTTCA+TGG - chr7_1:55876068-55876087 Msa1025370:intron 45.0%
TCCAACGCCTTCCTTATTCT+GGG - chr7_1:55876096-55876115 Msa1025370:intron 45.0%
CATTGCACCCAGAATAAGGA+AGG + chr7_1:55876106-55876125 None:intergenic 45.0%
CCCCACAAAACCAGTTTGTA+AGG + chr7_1:55876199-55876218 None:intergenic 45.0%
!!! ACAAACTGGTTTTGTGGGGT+TGG - chr7_1:55876200-55876219 Msa1025370:intron 45.0%
!!! CAAACTGGTTTTGTGGGGTT+GGG - chr7_1:55876201-55876220 Msa1025370:intron 45.0%
!! TAGTGGGGTGTTTCCTGTTT+TGG + chr7_1:55876578-55876597 None:intergenic 45.0%
AAGGTACATGCCCCAGATTT+CGG - chr7_1:55876683-55876702 Msa1025370:intron 45.0%
TATGATACTTGCAAGGGAGG+TGG + chr7_1:55876804-55876823 None:intergenic 45.0%
TTAAGCTTCATCCATCCACC+AGG - chr7_1:55876828-55876847 Msa1025370:intron 45.0%
TAAGCTTCATCCATCCACCA+GGG - chr7_1:55876829-55876848 Msa1025370:intron 45.0%
!! TATTGGTTCTAAGAGACCCC+TGG + chr7_1:55876849-55876868 None:intergenic 45.0%
CCCATGGGGACTATCTATAT+TGG + chr7_1:55876866-55876885 None:intergenic 45.0%
! CGTTTGGTTGTTTCGTTGTG+TGG - chr7_1:55877058-55877077 Msa1025370:intron 45.0%
TTCGTTGTGTGGGATTGTGA+TGG - chr7_1:55877069-55877088 Msa1025370:intron 45.0%
! TTTCTGGTGTTTGCAAGGAG+TGG - chr7_1:55877638-55877657 Msa1025370:intron 45.0%
!! AAATTTGAAAAAATATAAAT+TGG - chr7_1:55875664-55875683 Msa1025370:intron 5.0%
!! AATTTGAAAAAATATAAATT+GGG - chr7_1:55875665-55875684 Msa1025370:intron 5.0%
!! AAATTTGAAAAAATATAAAT+TGG - chr7_1:55875664-55875683 Msa1025370:intron 5.0%
!! AATTTGAAAAAATATAAATT+GGG - chr7_1:55875665-55875684 Msa1025370:intron 5.0%
GTGCAAAGTCGTGTACGTGA+GGG - chr7_1:55875991-55876010 Msa1025370:intron 50.0%
TGCAAAGTCGTGTACGTGAG+GGG - chr7_1:55875992-55876011 Msa1025370:intron 50.0%
!! CAGAATAAGGAAGGCGTTGG+AGG + chr7_1:55876097-55876116 None:intergenic 50.0%
CTCCAACGCCTTCCTTATTC+TGG - chr7_1:55876095-55876114 Msa1025370:intron 50.0%
! ACCCAGAATAAGGAAGGCGT+TGG + chr7_1:55876100-55876119 None:intergenic 50.0%
ATTCTTAGGCATGCAAGCCC+TGG - chr7_1:55876376-55876395 Msa1025370:intron 50.0%
!!! GGGTGTTTCCTGTTTTGGTG+TGG + chr7_1:55876573-55876592 None:intergenic 50.0%
AAGCTTCATCCATCCACCAG+GGG - chr7_1:55876830-55876849 Msa1025370:intron 50.0%
GTGCAAAGTCGTGTACGTGA+GGG - chr7_1:55875991-55876010 Msa1025370:intron 50.0%
TGCAAAGTCGTGTACGTGAG+GGG - chr7_1:55875992-55876011 Msa1025370:intron 50.0%
!! CAGAATAAGGAAGGCGTTGG+AGG + chr7_1:55876097-55876116 None:intergenic 50.0%
CTCCAACGCCTTCCTTATTC+TGG - chr7_1:55876095-55876114 Msa1025370:intron 50.0%
! ACCCAGAATAAGGAAGGCGT+TGG + chr7_1:55876100-55876119 None:intergenic 50.0%
ATTCTTAGGCATGCAAGCCC+TGG - chr7_1:55876376-55876395 Msa1025370:intron 50.0%
!!! GGGTGTTTCCTGTTTTGGTG+TGG + chr7_1:55876573-55876592 None:intergenic 50.0%
AAGCTTCATCCATCCACCAG+GGG - chr7_1:55876830-55876849 Msa1025370:intron 50.0%
GGTGCAAAGTCGTGTACGTG+AGG - chr7_1:55875990-55876009 Msa1025370:intron 55.0%
! CTAGGGGAAGGGCGCAATTA+AGG + chr7_1:55876034-55876053 None:intergenic 55.0%
TCTAAGAGACCCCTGGTGGA+TGG + chr7_1:55876842-55876861 None:intergenic 55.0%
!! TGGTTCTAAGAGACCCCTGG+TGG + chr7_1:55876846-55876865 None:intergenic 55.0%
CTGGTGTTTGCAAGGAGTGG+AGG - chr7_1:55877641-55877660 Msa1025370:intron 55.0%
!! GCGCGGTAAGCTCGTTTTTC+AGG + chr7_1:55877769-55877788 None:intergenic 55.0%
GGTGCAAAGTCGTGTACGTG+AGG - chr7_1:55875990-55876009 Msa1025370:intron 55.0%
! CTAGGGGAAGGGCGCAATTA+AGG + chr7_1:55876034-55876053 None:intergenic 55.0%
TCTAAGAGACCCCTGGTGGA+TGG + chr7_1:55876842-55876861 None:intergenic 55.0%
!! TGGTTCTAAGAGACCCCTGG+TGG + chr7_1:55876846-55876865 None:intergenic 55.0%
CTGGTGTTTGCAAGGAGTGG+AGG - chr7_1:55877641-55877660 Msa1025370:intron 55.0%
!! GCGCGGTAAGCTCGTTTTTC+AGG + chr7_1:55877769-55877788 None:intergenic 55.0%
! GGCGTTGGAGGTTGCCATGA+AGG + chr7_1:55876085-55876104 None:intergenic 60.0%
! GGCGTTGGAGGTTGCCATGA+AGG + chr7_1:55876085-55876104 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 55875410 55877796 55875410 ID=Msa1025370;Name=Msa1025370
chr7_1 mRNA 55875410 55877796 55875410 ID=Msa1025370-mRNA-1;Parent=Msa1025370;Name=Msa1025370-mRNA-1;_AED=0.56;_eAED=1.00;_QI=0|0|0|0.33|0|0|3|0|108
chr7_1 exon 55877732 55877796 55877732 ID=Msa1025370-mRNA-1:exon:11171;Parent=Msa1025370-mRNA-1
chr7_1 exon 55877394 55877400 55877394 ID=Msa1025370-mRNA-1:exon:11170;Parent=Msa1025370-mRNA-1
chr7_1 exon 55875410 55875664 55875410 ID=Msa1025370-mRNA-1:exon:11169;Parent=Msa1025370-mRNA-1
chr7_1 CDS 55877732 55877796 55877732 ID=Msa1025370-mRNA-1:cds;Parent=Msa1025370-mRNA-1
chr7_1 CDS 55877394 55877400 55877394 ID=Msa1025370-mRNA-1:cds;Parent=Msa1025370-mRNA-1
chr7_1 CDS 55875410 55875664 55875410 ID=Msa1025370-mRNA-1:cds;Parent=Msa1025370-mRNA-1
Gene Sequence

>Msa1025370

ATGCAAGTTGACAAGATGCTCACAAAGAATTCAGAGCAAGGGAGTGACGGAGATGATTCTAAGAGATTGGGTGTAAAGAAGCGAAAAGTGTTGTTGACTTCAGCGAACTTTCGGATAATGTACTTGATACCATATCTCGAAAGCTGGATTTTGACGATCTATTTCAATTTTCTGGTGTTTGCAAGGAGTGGAGGAGAGTTCAAAAAATTTATTGGAGAAGTTTCATGGTATCCCAATCACCACTACTTGTTCAAACAACTTCATATGCAAAGAAATTTTGTTCTTTTTATAGCATACCTGAAAAACGAGCTTACCGCGCTAAGATGA

Protein sequence

>Msa1025370

MQVDKMLTKNSEQGSDGDDSKRLGVKKRKVLLTSANFRIMYLIPYLESWILTIYFNFLVFARSGGEFKKFIGEVSWYPNHHYLFKQLHMQRNFVLFIAYLKNELTALR*