AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0922060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0922060 MtrunA17_Chr6g0479271 85.714 329 38 3 28 355 8 328 0.0 530
Msa0922060 MtrunA17_Chr8g0387181 57.303 356 81 8 29 323 177 522 2.46e-110 335
Msa0922060 MtrunA17_Chr8g0387181 72.973 37 10 0 319 355 592 628 9.52e-12 66.2
Msa0922060 MtrunA17_Chr8g0387141 58.055 329 78 10 29 321 184 488 1.18e-103 317
Msa0922060 MtrunA17_Chr8g0387141 75.676 37 9 0 319 355 560 596 1.45e-11 65.5
Msa0922060 MtrunA17_Chr5g0420461 79.899 199 22 1 157 355 17 197 3.99e-100 294
Msa0922060 MtrunA17_Chr1g0186281 55.380 316 107 8 30 328 186 484 2.79e-93 289
Msa0922060 MtrunA17_Chr1g0186191 54.242 330 101 9 30 328 184 494 5.82e-93 289
Msa0922060 MtrunA17_Chr1g0186261 54.259 317 111 8 30 328 187 487 5.10e-91 283
Msa0922060 MtrunA17_Chr8g0387161 56.303 238 36 6 103 321 1 189 3.02e-72 226
Msa0922060 MtrunA17_Chr8g0387161 75.676 37 9 0 319 355 261 297 4.02e-11 63.2
Msa0922060 MtrunA17_Chr7g0248041 31.741 293 179 9 41 322 201 483 7.31e-28 114
Msa0922060 MtrunA17_Chr8g0348691 38.286 175 90 6 164 322 1 173 7.38e-27 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0922060 AT4G11400.2 29.352 293 149 9 71 321 195 471 7.66e-27 112
Msa0922060 AT4G11400.1 29.352 293 149 9 71 321 195 471 7.66e-27 112
Msa0922060 AT2G46040.2 30.924 249 136 6 83 319 246 470 1.47e-25 108
Msa0922060 AT2G46040.3 30.924 249 136 6 83 319 232 456 1.58e-25 107
Msa0922060 AT2G46040.1 30.924 249 136 6 83 319 232 456 1.58e-25 107
Msa0922060 AT5G04110.4 33.083 133 77 4 212 332 344 476 2.02e-11 65.5
Msa0922060 AT5G04110.2 33.083 133 77 4 212 332 345 477 2.42e-11 65.5
Msa0922060 AT5G04110.1 33.083 133 77 4 212 332 344 476 2.48e-11 65.5
Msa0922060 AT5G04110.3 33.083 133 77 4 212 332 344 476 2.48e-11 65.5

Find 197 sgRNAs with CRISPR-Local

Find 441 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCATCACCGTTAAAATTT+TGG 0.115734 6_2:+59976622 None:intergenic
CACCCTCACATTTGTTGTTT+TGG 0.143855 6_2:+59976646 None:intergenic
TCCTTATATGTCTCCTTCTA+TGG 0.146412 6_2:-59980018 Msa0922060:five_prime_UTR
ATGGGGTAAAATGGGAATTT+TGG 0.174593 6_2:-59977746 Msa0922060:five_prime_UTR
TTCATTCTCCCAAACGTAAA+AGG 0.179524 6_2:-59976515 Msa0922060:CDS
TTCTGCTTGTGCTTCTATTT+TGG 0.197746 6_2:-59981022 Msa0922060:five_prime_UTR
CAAACTTAGGGAAATGTATT+TGG 0.236081 6_2:+59977424 None:intergenic
CATTTCCCTAAGTTTGATTA+AGG 0.241443 6_2:-59977417 Msa0922060:five_prime_UTR
TGCATTTCACTTTCTGTTGC+AGG 0.241637 6_2:-59975298 Msa0922060:CDS
TGACATGAAAATCTTATATA+TGG 0.248384 6_2:+59977468 None:intergenic
TTTATCGGACTGGACTAAAA+TGG 0.250700 6_2:-59977319 Msa0922060:five_prime_UTR
GTATAAAACATGGGGTAAAA+TGG 0.255054 6_2:-59977755 Msa0922060:five_prime_UTR
GTACCATCAACATATATAAA+AGG 0.256363 6_2:-59976895 Msa0922060:five_prime_UTR
TTCCATACAGCTTCTTGATA+TGG 0.274256 6_2:+59980068 None:intergenic
CCTAAGTTTGATTAAGGAAA+TGG 0.286278 6_2:-59977411 Msa0922060:five_prime_UTR
CCTTTGGGGATTTGACAAAA+TGG 0.297533 6_2:-59974945 Msa0922060:CDS
GAAGAAACTGAAGCTTGAAT+TGG 0.300868 6_2:-59974981 Msa0922060:CDS
CTAATCGATTTGGGCTTTAT+CGG 0.300905 6_2:-59977334 Msa0922060:five_prime_UTR
ACAAGTTCTGTTTCTGTAGT+AGG 0.308191 6_2:+59975085 None:intergenic
TTGACTTGACCTAATCGATT+TGG 0.314487 6_2:-59977344 Msa0922060:five_prime_UTR
GCATTGCTACTATTTATTCT+TGG 0.315728 6_2:-59978088 Msa0922060:five_prime_UTR
TACTAGTCATGTTCGTTTCC+AGG 0.316810 6_2:+59979892 None:intergenic
TTTGATTAAGGAAATGGATT+TGG 0.323594 6_2:-59977405 Msa0922060:five_prime_UTR
TATATATCTTCAGAAGGATT+TGG 0.326608 6_2:+59977784 None:intergenic
TGGTTCTGCAGTTATCTAAA+AGG 0.332136 6_2:-59978123 Msa0922060:intron
TGACTTGACCTAATCGATTT+GGG 0.335524 6_2:-59977343 Msa0922060:five_prime_UTR
GAAGTTAAGTTTGGATCATT+TGG 0.345699 6_2:-59974917 Msa0922060:CDS
GTTAGAAACTTACTATGTTT+AGG 0.347014 6_2:+59980752 None:intergenic
CAGTAAAAGTTTCAGTTTCA+AGG 0.348216 6_2:+59976757 None:intergenic
CCATTTCCTTAATCAAACTT+AGG 0.349665 6_2:+59977411 None:intergenic
CCTTATATGTCTCCTTCTAT+GGG 0.352549 6_2:-59980017 Msa0922060:five_prime_UTR
ACCCTAGTATTAGTGTTTGA+TGG 0.354229 6_2:-59977271 Msa0922060:five_prime_UTR
CGTAAAAGGGAATCATTATC+AGG 0.354620 6_2:-59976501 Msa0922060:CDS
GTCTTTATTACCATTTCATC+AGG 0.357004 6_2:-59977979 Msa0922060:five_prime_UTR
ATATACAGCTCACTTTGTTC+CGG 0.357382 6_2:+59977812 None:intergenic
TCAAACTTAGGCAAATGTAT+TGG 0.361149 6_2:+59979686 None:intergenic
AATGCTTAGGCACACAAGTA+TGG 0.365629 6_2:-59975126 Msa0922060:CDS
ACTCACATTTCATCAACATT+AGG 0.371368 6_2:+59979972 None:intergenic
CCCATAGAAGGAGACATATA+AGG 0.375367 6_2:+59980017 None:intergenic
CAAACTTAGGCAAATGTATT+GGG 0.375971 6_2:+59979687 None:intergenic
TGCCAGCGTGAGGACCTCTT+TGG 0.376327 6_2:+59979510 None:intergenic
TATAAAACATGGGGTAAAAT+GGG 0.377359 6_2:-59977754 Msa0922060:five_prime_UTR
GCATCCATCTGTGGATTTCA+TGG 0.379025 6_2:-59974867 Msa0922060:CDS
ATGGGCGAGGAAGTTAAGTT+TGG 0.380276 6_2:-59974926 Msa0922060:CDS
CATTATCAGGAATGATAAAC+TGG 0.390695 6_2:-59976488 Msa0922060:CDS
ATTCTTGGCATTCTTCTTCA+AGG 0.392341 6_2:-59978073 Msa0922060:five_prime_UTR
CAAGGAAATGAAGGGTTTCA+TGG 0.393363 6_2:+59977118 None:intergenic
AAAATAACCACCTGATGAAA+TGG 0.395936 6_2:+59977969 None:intergenic
TGTCGAGGATCGTGTTGATT+TGG 0.396855 6_2:-59976709 Msa0922060:CDS
TATACAGCTCACTTTGTTCC+GGG 0.400953 6_2:+59977813 None:intergenic
CATTTCCTTAATCAAACTTA+GGG 0.401565 6_2:+59977412 None:intergenic
TTGTTAACAAACCCCATAGA+AGG 0.401809 6_2:+59980005 None:intergenic
ATCTGTGAATAAATATCTAA+TGG 0.409677 6_2:-59977035 Msa0922060:five_prime_UTR
CTGCATCTCAATTTCACTAC+TGG 0.410524 6_2:+59975361 None:intergenic
GTTTAAGTGAGTTGACCTTC+GGG 0.413198 6_2:-59979601 Msa0922060:five_prime_UTR
AAAGTCAGACATGGTTAGTC+AGG 0.413848 6_2:+59979653 None:intergenic
CTAACTCAAGCTTATAAAAC+CGG 0.415744 6_2:+59977641 None:intergenic
AGTTTAAGTGAGTTGACCTT+CGG 0.420584 6_2:-59979602 Msa0922060:five_prime_UTR
CATTTAACTATACATTACTT+TGG 0.420970 6_2:-59977914 Msa0922060:five_prime_UTR
GCTTATAAAACCGGGTTGTA+AGG 0.421019 6_2:+59977650 None:intergenic
GATATAACATTACTATATAC+TGG 0.422649 6_2:+59976956 None:intergenic
GTCAAAAGTTCATGGCAAAC+AGG 0.430962 6_2:-59976794 Msa0922060:exon
CAAGAGTGATGGTAATTTAT+CGG 0.432110 6_2:-59976679 Msa0922060:CDS
CTTTGGGGATTTGACAAAAT+GGG 0.434572 6_2:-59974944 Msa0922060:CDS
GATGTCAAATTGCTGCAAAC+AGG 0.434612 6_2:-59975003 Msa0922060:CDS
GTGGTGGAGGTGGTACTAAC+TGG 0.443388 6_2:+59977210 None:intergenic
CGATAAAGCCCAAATCGATT+AGG 0.443626 6_2:+59977335 None:intergenic
GAAGTAGAGTCAAAAGTTCA+TGG 0.446925 6_2:-59976802 Msa0922060:exon
TTATACTCCTCAGGATCAAA+TGG 0.449138 6_2:+59976444 None:intergenic
TTTGATCCTGAGGAGTATAA+AGG 0.450132 6_2:-59976441 Msa0922060:CDS
TGAAAATCATTGAGAATTGA+TGG 0.453425 6_2:+59977188 None:intergenic
TTTACTGAGTTTCATGGAAA+CGG 0.454608 6_2:-59976741 Msa0922060:CDS
CGATTTGGGCTTTATCGGAC+TGG 0.454922 6_2:-59977329 Msa0922060:five_prime_UTR
CTACAGAAACAGAACTTGTT+GGG 0.459894 6_2:-59975081 Msa0922060:CDS
AACCATCAAACACTAATACT+AGG 0.460538 6_2:+59977269 None:intergenic
AAGAAACTGAAGCTTGAATT+GGG 0.460548 6_2:-59974980 Msa0922060:CDS
ATCTTTAAGAATGAAGTTCA+AGG 0.460830 6_2:-59979922 Msa0922060:five_prime_UTR
TATAATTTAGAATTTGAGTT+GGG 0.461279 6_2:+59977617 None:intergenic
GTGATAAATTCCTTCACATA+TGG 0.461980 6_2:-59977943 Msa0922060:five_prime_UTR
GTCCATATCAAGAAGCTGTA+TGG 0.463848 6_2:-59980070 Msa0922060:five_prime_UTR
TGCTATCTTTGCACAGTATG+AGG 0.463866 6_2:+59980970 None:intergenic
AAACTACACCAGTACATTGC+GGG 0.464290 6_2:+59975164 None:intergenic
TTATCGGACTGGACTAAAAT+GGG 0.468775 6_2:-59977318 Msa0922060:five_prime_UTR
CAGCGTGAGGACCTCTTTGG+AGG 0.470122 6_2:+59979513 None:intergenic
GTTTATCATTCACTTGTTTG+TGG 0.470731 6_2:-59974685 Msa0922060:three_prime_UTR
GAGGTCCTCACGCTGGCAAT+GGG 0.471561 6_2:-59979505 Msa0922060:five_prime_UTR
TCATGGCAGTGTGAAAAGAT+AGG 0.472141 6_2:+59977135 None:intergenic
TTGCTGCTTGCTTAATGTGA+TGG 0.473325 6_2:-59977859 Msa0922060:five_prime_UTR
TACCATCAACATATATAAAA+GGG 0.476086 6_2:-59976894 Msa0922060:five_prime_UTR
ACTACAGAAACAGAACTTGT+TGG 0.476498 6_2:-59975082 Msa0922060:CDS
GTGGAACTCCCGCAATGTAC+TGG 0.476663 6_2:-59975172 Msa0922060:CDS
TTCGATGATGACCCACTGTC+TGG 0.477069 6_2:+59976351 None:intergenic
TCATTCTCCCAAACGTAAAA+GGG 0.477895 6_2:-59976514 Msa0922060:CDS
TTTCAGTTTCAAGGCGATCA+AGG 0.482418 6_2:+59976766 None:intergenic
TGGCCACCTTTATACTCCTC+AGG 0.485872 6_2:+59976435 None:intergenic
AGAGGTCCTCACGCTGGCAA+TGG 0.487083 6_2:-59979506 Msa0922060:five_prime_UTR
GACATATAAGGATAAACATC+AGG 0.491233 6_2:+59980029 None:intergenic
CAGTGACAACAAGGAAATGA+AGG 0.492989 6_2:+59977109 None:intergenic
CTACGAGTTCTTCCTCAGAA+TGG 0.493368 6_2:+59974788 None:intergenic
GAGTGTAGCTGCAACGTTCA+AGG 0.494639 6_2:-59975043 Msa0922060:CDS
ATCTTCTTCACCTTCTGTAA+AGG 0.495424 6_2:+59975406 None:intergenic
ACTAGTCATGTTCGTTTCCA+GGG 0.500474 6_2:+59979893 None:intergenic
TTGTTCCGGGAGATAACTCC+CGG 0.504888 6_2:+59977826 None:intergenic
TAGTTACCAGCTAGATGTCT+TGG 0.505712 6_2:-59977069 Msa0922060:five_prime_UTR
CACCTCCGGGAGTTATCTCC+CGG 0.506086 6_2:-59977831 Msa0922060:five_prime_UTR
ACTTGTCTTAAAATATCATC+AGG 0.507538 6_2:+59974706 None:intergenic
TTGGCATTCTTCTTCAAGGT+CGG 0.511031 6_2:-59978069 Msa0922060:five_prime_UTR
ACCATCAAACACTAATACTA+GGG 0.512056 6_2:+59977270 None:intergenic
GAGAGTGACTCTAAATGCTT+AGG 0.519975 6_2:-59975139 Msa0922060:CDS
AGAATTGATGGTGGTGGAGG+TGG 0.521806 6_2:+59977200 None:intergenic
GATGCATCCTGCCATGTATG+AGG 0.522667 6_2:-59975386 Msa0922060:CDS
GAAGTTCAAGGTTCAAGCCC+TGG 0.523038 6_2:-59979910 Msa0922060:five_prime_UTR
AAGTTTGGATCATTTGGTGA+TGG 0.523787 6_2:-59974911 Msa0922060:CDS
TTTATTACCATTTCATCAGG+TGG 0.531191 6_2:-59977976 Msa0922060:five_prime_UTR
ATAAATTACCATCACTCTTG+TGG 0.532243 6_2:+59976682 None:intergenic
TGAGGAGTATAAAGGTGGCC+AGG 0.539042 6_2:-59976433 Msa0922060:CDS
CAAATTCTAAATTATATACA+AGG 0.539254 6_2:-59977610 Msa0922060:five_prime_UTR
GGACTGGACTAAAATGGGCC+TGG 0.541149 6_2:-59977313 Msa0922060:five_prime_UTR
CACTACTGGATCCTCATACA+TGG 0.542824 6_2:+59975375 None:intergenic
CTCAGAAGTTTCCACAGAAG+AGG 0.547333 6_2:+59976545 None:intergenic
ACATATATAAAAGGGCAAGC+TGG 0.548326 6_2:-59976886 Msa0922060:five_prime_UTR
TTGAGAATTGATGGTGGTGG+AGG 0.549041 6_2:+59977197 None:intergenic
CTTGCGGCCTACCCTGACCC+TGG 0.549472 6_2:+59979572 None:intergenic
TTCTGAAACTCCTTTACAGA+AGG 0.551096 6_2:-59975416 Msa0922060:CDS
CAGGGTCAGGGTAGGCCGCA+AGG 0.553162 6_2:-59979571 Msa0922060:five_prime_UTR
AGTTGAACACATGACATTGC+AGG 0.555423 6_2:-59979482 Msa0922060:intron
GAGGAAGAACTCGTAGAAGC+TGG 0.557392 6_2:-59974781 Msa0922060:three_prime_UTR
ATGTGATGGAAACACACCTC+CGG 0.557626 6_2:-59977845 Msa0922060:five_prime_UTR
TTCAGTTTCAAGGCGATCAA+GGG 0.564552 6_2:+59976767 None:intergenic
GGGTTCACCAGGGTCAGGGT+AGG 0.566413 6_2:-59979579 Msa0922060:five_prime_UTR
AGCGTGAGGACCTCTTTGGA+GGG 0.568117 6_2:+59979514 None:intergenic
TGTGATGGAAACACACCTCC+GGG 0.570064 6_2:-59977844 Msa0922060:five_prime_UTR
ATATAATTTAGAATTTGAGT+TGG 0.570361 6_2:+59977616 None:intergenic
AAAATTCAGCACTGGTGTCA+AGG 0.573154 6_2:-59976580 Msa0922060:CDS
CGATCTAGCCACCTCTTCTG+TGG 0.575815 6_2:-59976556 Msa0922060:CDS
TAATGACCAAGACATCTAGC+TGG 0.581762 6_2:+59977063 None:intergenic
TTGGTTAACCACAAGAGTGA+TGG 0.581825 6_2:-59976690 Msa0922060:CDS
CTTATATGTCTCCTTCTATG+GGG 0.582249 6_2:-59980016 Msa0922060:five_prime_UTR
TTAGCGCTCGGCGAGCCTTG+CGG 0.583831 6_2:+59979556 None:intergenic
ACTGGATCCTCATACATGGC+AGG 0.586396 6_2:+59975379 None:intergenic
TAACGGTGATGATGGTAATG+AGG 0.590152 6_2:-59976613 Msa0922060:CDS
AACCAAAACAACAAATGTGA+GGG 0.590681 6_2:-59976648 Msa0922060:CDS
CTCCAAAGAGGTCCTCACGC+TGG 0.590811 6_2:-59979512 Msa0922060:five_prime_UTR
AAGAATGCAGAACCAGACAG+TGG 0.593873 6_2:-59976363 Msa0922060:CDS
ACATTTCATCAACATTAGGA+TGG 0.594673 6_2:+59979976 None:intergenic
GGCATGCAATAATCAAACTT+AGG 0.595326 6_2:+59979674 None:intergenic
TGAAATTGAGATGCAGTGAA+AGG 0.595942 6_2:-59975354 Msa0922060:CDS
GAATTTGATCACAAAACTAG+AGG 0.597569 6_2:+59976842 None:intergenic
CACTCCATGAAATCCACAGA+TGG 0.598826 6_2:+59974863 None:intergenic
GGGCCTAAGAGATATGGAGG+GGG 0.602058 6_2:-59977722 Msa0922060:five_prime_UTR
GGGATTTGACAAAATGGGCG+AGG 0.602480 6_2:-59974939 Msa0922060:CDS
AGAAGTTTCCACAGAAGAGG+TGG 0.603484 6_2:+59976548 None:intergenic
AAAGCATAATAATCTAAACT+AGG 0.605328 6_2:+59974655 None:intergenic
TTAAGTGAGTTGACCTTCGG+GGG 0.606710 6_2:-59979599 Msa0922060:five_prime_UTR
CTCTGGTATATATCTTCAGA+AGG 0.607599 6_2:+59977778 None:intergenic
TATACCAGAGGTATAAAACA+TGG 0.608087 6_2:-59977765 Msa0922060:five_prime_UTR
AATTGATAGAAGACTACGAA+GGG 0.611166 6_2:+59977006 None:intergenic
AAACCAAAACAACAAATGTG+AGG 0.612820 6_2:-59976649 Msa0922060:CDS
AATGTCAACACCATATGTGA+AGG 0.613976 6_2:+59977933 None:intergenic
ATTTAAAATGACAGTAAACA+AGG 0.614464 6_2:+59979835 None:intergenic
ACATTACTATATACTGGTGA+AGG 0.614663 6_2:+59976962 None:intergenic
GGGGCCTAAGAGATATGGAG+GGG 0.615643 6_2:-59977723 Msa0922060:five_prime_UTR
GTTGCAGGAAATAAACTGCA+CGG 0.618806 6_2:-59975283 Msa0922060:CDS
TTGCAGATCACCCTCCAAAG+AGG 0.619395 6_2:-59979524 Msa0922060:five_prime_UTR
CAACTCCCATTGCCAGCGTG+AGG 0.620295 6_2:+59979500 None:intergenic
ATACCAGAGGTATAAAACAT+GGG 0.621785 6_2:-59977764 Msa0922060:five_prime_UTR
GAAGCTCTCACCTTACAACC+CGG 0.624116 6_2:-59977660 Msa0922060:five_prime_UTR
CAGTGTGGTAAGCCATTCTG+AGG 0.625655 6_2:-59974800 Msa0922060:three_prime_UTR
TGAAAACGATGACCTACAGA+TGG 0.625658 6_2:+59975196 None:intergenic
AGACAGTGGGTCATCATCGA+AGG 0.626066 6_2:-59976349 Msa0922060:intron
CATTTGGTGATGGTTTCGAG+AGG 0.630151 6_2:-59974901 Msa0922060:CDS
AATACATCCATTTGATCCTG+AGG 0.631025 6_2:-59976451 Msa0922060:CDS
AGCTATCAAGCATCCATCTG+TGG 0.633077 6_2:-59974876 Msa0922060:CDS
AGCTGTATGGAAGATAAGAG+TGG 0.635714 6_2:-59980057 Msa0922060:five_prime_UTR
AGAATGCAGAACCAGACAGT+GGG 0.644123 6_2:-59976362 Msa0922060:CDS
TCATTGAGAATTGATGGTGG+TGG 0.644339 6_2:+59977194 None:intergenic
TAACTCAAGCTTATAAAACC+GGG 0.646677 6_2:+59977642 None:intergenic
AGTGACAACAAGGAAATGAA+GGG 0.647243 6_2:+59977110 None:intergenic
TTTAAGTGAGTTGACCTTCG+GGG 0.652377 6_2:-59979600 Msa0922060:five_prime_UTR
AAACGGCAATTGTCTTGTCG+AGG 0.655256 6_2:-59976724 Msa0922060:CDS
TCATTTCCTTGTTGTCACTG+CGG 0.657072 6_2:-59977106 Msa0922060:five_prime_UTR
TACCAGAGGTATAAAACATG+GGG 0.660109 6_2:-59977763 Msa0922060:five_prime_UTR
GATCCTGAGGAGTATAAAGG+TGG 0.663919 6_2:-59976438 Msa0922060:CDS
ATTTGGTGATGGTTTCGAGA+GGG 0.668136 6_2:-59974900 Msa0922060:CDS
GTGGGCAAGAGATGTTCTGT+CGG 0.673366 6_2:-59976391 Msa0922060:CDS
TAAACTACACCAGTACATTG+CGG 0.676923 6_2:+59975163 None:intergenic
AATTGAGATGCAGTGAAAGG+CGG 0.677176 6_2:-59975351 Msa0922060:CDS
CTTGTTGGGAGAGAAAGACG+AGG 0.678364 6_2:-59975067 Msa0922060:CDS
AAAGCGGAGATGATCAACAA+TGG 0.687050 6_2:-59980806 Msa0922060:five_prime_UTR
AGTAGCAATGCTCTTCTACG+TGG 0.702940 6_2:+59978100 None:intergenic
CTTCTGAAGATATATACCAG+AGG 0.718667 6_2:-59977777 Msa0922060:five_prime_UTR
GTTGATGACTGATTGCAAAG+CGG 0.741293 6_2:-59980822 Msa0922060:five_prime_UTR
TTTGAGTAGACAAAACAGTG+TGG 0.748066 6_2:-59974815 Msa0922060:exon
TTCCGGGAGATAACTCCCGG+AGG 0.749314 6_2:+59977829 None:intergenic
AAATCATTGAGAATTGATGG+TGG 0.754340 6_2:+59977191 None:intergenic
AAATTGATAGAAGACTACGA+AGG 0.758912 6_2:+59977005 None:intergenic
GAAATGCAGCAAGAACAGCG+CGG 0.851698 6_2:+59975313 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGAATAATTTTTTTTAC+AGG + chr6_2:59976383-59976402 None:intergenic 10.0%
!!! AAAGTCTTATATATTTTAAA+AGG + chr6_2:59976505-59976524 None:intergenic 10.0%
!!! AAAAGATTAATATATTTTGT+TGG - chr6_2:59976673-59976692 Msa0922060:CDS 10.0%
!!! AAAGATTAATATATTTTGTT+GGG - chr6_2:59976674-59976693 Msa0922060:CDS 10.0%
!!! AAGATTTTGTAATTTTAAAA+TGG + chr6_2:59978162-59978181 None:intergenic 10.0%
!! TAAAAAAAAAATCAAACTTA+GGG + chr6_2:59978309-59978328 None:intergenic 10.0%
!! ATAAAAAAAAAATCAAACTT+AGG + chr6_2:59978310-59978329 None:intergenic 10.0%
!!! TTTGATTTTTTTTTTATAGT+AGG - chr6_2:59978313-59978332 Msa0922060:intron 10.0%
!! GTTAATACAATAATAATATA+CGG - chr6_2:59979607-59979626 Msa0922060:five_prime_UTR 10.0%
!! TTAATACAATAATAATATAC+GGG - chr6_2:59979608-59979627 Msa0922060:five_prime_UTR 10.0%
!!! ATTTCTAATCTTTTTGTAAT+TGG - chr6_2:59974821-59974840 Msa0922060:exon 15.0%
!!! TTTCTAATCTTTTTGTAATT+GGG - chr6_2:59974822-59974841 Msa0922060:exon 15.0%
!! ATAACAATCTATAATACTAA+AGG + chr6_2:59975045-59975064 None:intergenic 15.0%
!! CATAAATAAACACAAATAAA+AGG + chr6_2:59975408-59975427 None:intergenic 15.0%
!!! TAAGATTTGTAATTTTAAAC+TGG + chr6_2:59975906-59975925 None:intergenic 15.0%
!!! ATTTTTATATTGTCTATACA+AGG - chr6_2:59975937-59975956 Msa0922060:intron 15.0%
!!! TTTATTTTATTGTTTTTCCA+AGG - chr6_2:59976278-59976297 Msa0922060:intron 15.0%
!!! TTATTTTATTGTTTTTCCAA+GGG - chr6_2:59976279-59976298 Msa0922060:intron 15.0%
!!! AAGATTTTGTAATTTTAAAC+TGG + chr6_2:59976458-59976477 None:intergenic 15.0%
!!! TTTTTCGTTAAAGATATATA+CGG - chr6_2:59977016-59977035 Msa0922060:five_prime_UTR 15.0%
!! CATTATAAATTACATTATGT+AGG + chr6_2:59977169-59977188 None:intergenic 15.0%
!! CTACATAATGTAATTTATAA+TGG - chr6_2:59977167-59977186 Msa0922060:five_prime_UTR 15.0%
!! ATATAAACAAGATTTAGAAA+TGG + chr6_2:59977211-59977230 None:intergenic 15.0%
!!! ATTTCTAAATCTTGTTTATA+TGG - chr6_2:59977210-59977229 Msa0922060:five_prime_UTR 15.0%
!!! TTTCTAAATCTTGTTTATAT+GGG - chr6_2:59977211-59977230 Msa0922060:five_prime_UTR 15.0%
!!! TATAATTTAGAATTTGAGTT+GGG + chr6_2:59978067-59978086 None:intergenic 15.0%
!!! ATATAATTTAGAATTTGAGT+TGG + chr6_2:59978068-59978087 None:intergenic 15.0%
!! CAAATTCTAAATTATATACA+AGG - chr6_2:59978071-59978090 Msa0922060:five_prime_UTR 15.0%
!! AAAAAAAAAATCAAACTTAG+GGG + chr6_2:59978308-59978327 None:intergenic 15.0%
!!! GAATTTATGTGTATTATTTT+AGG + chr6_2:59979549-59979568 None:intergenic 15.0%
!! TGGAAAATAAAAATAACAAA+TGG - chr6_2:59979942-59979961 Msa0922060:five_prime_UTR 15.0%
!! GGAAAATAAAAATAACAAAT+GGG - chr6_2:59979943-59979962 Msa0922060:five_prime_UTR 15.0%
!!! TTTTTTTGAAGAAAATATCA+TGG + chr6_2:59980234-59980253 None:intergenic 15.0%
!!! CTATGTTTAATTTTGTTAAG+TGG + chr6_2:59974630-59974649 None:intergenic 20.0%
!! GAAGAAAAAAATTGATACAA+GGG + chr6_2:59974957-59974976 None:intergenic 20.0%
!! AGAAGAAAAAAATTGATACA+AGG + chr6_2:59974958-59974977 None:intergenic 20.0%
!!! CAATTTTTTTCTTCTTTTTG+TGG - chr6_2:59974963-59974982 Msa0922060:CDS 20.0%
!! TAAAGGAATAACATTTCAAT+TGG + chr6_2:59975028-59975047 None:intergenic 20.0%
!! TATAATTACACTGAATTACA+TGG + chr6_2:59975143-59975162 None:intergenic 20.0%
!!! AGTTGTTCATTATTTTCTAA+GGG - chr6_2:59975729-59975748 Msa0922060:intron 20.0%
!!! AAGGAAGCATTTTATTTTAT+AGG + chr6_2:59975830-59975849 None:intergenic 20.0%
!!! ATTTAAAATGACAGTAAACA+AGG + chr6_2:59975849-59975868 None:intergenic 20.0%
!! AATAAAAATAAAGTCAGACA+TGG + chr6_2:59976040-59976059 None:intergenic 20.0%
!!! TCTTTTAGATGTATAGAATA+GGG + chr6_2:59976903-59976922 None:intergenic 20.0%
!!! ATCTTTTAGATGTATAGAAT+AGG + chr6_2:59976904-59976923 None:intergenic 20.0%
!!! TTCTAAATCTTGTTTATATG+GGG - chr6_2:59977212-59977231 Msa0922060:five_prime_UTR 20.0%
!!! GTTATAAGAAACAAATTTTG+CGG - chr6_2:59977263-59977282 Msa0922060:five_prime_UTR 20.0%
!! AAAGTTATAGGGTTAATATT+AGG - chr6_2:59977401-59977420 Msa0922060:five_prime_UTR 20.0%
!! ATGTAAAATTGTTGTCTAAA+TGG - chr6_2:59977538-59977557 Msa0922060:five_prime_UTR 20.0%
!! CATTTAACTATACATTACTT+TGG - chr6_2:59977767-59977786 Msa0922060:five_prime_UTR 20.0%
!!! ATTTTATAGACGATATCTAT+TGG - chr6_2:59977791-59977810 Msa0922060:five_prime_UTR 20.0%
!! TGACATGAAAATCTTATATA+TGG + chr6_2:59978216-59978235 None:intergenic 20.0%
!! AAAAAAAAATCAAACTTAGG+GGG + chr6_2:59978307-59978326 None:intergenic 20.0%
!! ATCTGTGAATAAATATCTAA+TGG - chr6_2:59978646-59978665 Msa0922060:intron 20.0%
!! GATATAACATTACTATATAC+TGG + chr6_2:59978728-59978747 None:intergenic 20.0%
!! TACCATCAACATATATAAAA+GGG - chr6_2:59978787-59978806 Msa0922060:intron 20.0%
!!! TTATACATGATTTTACACAT+TGG - chr6_2:59979380-59979399 Msa0922060:intron 20.0%
!! AAAGCATAATAATCTAAACT+AGG + chr6_2:59981029-59981048 None:intergenic 20.0%
! GTTAGAAACTTACTATGTTT+AGG + chr6_2:59974932-59974951 None:intergenic 25.0%
!! TGGTTTTCTCAAATTATTTG+CGG + chr6_2:59975123-59975142 None:intergenic 25.0%
! TTCAGTGTAATTATATGTGT+CGG - chr6_2:59975148-59975167 Msa0922060:CDS 25.0%
!!! TGTTATCACTCACTTTTATT+AGG - chr6_2:59975577-59975596 Msa0922060:intron 25.0%
!! GAGTTGTTCATTATTTTCTA+AGG - chr6_2:59975728-59975747 Msa0922060:intron 25.0%
!! ATCTTTAAGAATGAAGTTCA+AGG - chr6_2:59975759-59975778 Msa0922060:intron 25.0%
! AACTCACATTACATAACATT+TGG + chr6_2:59976260-59976279 None:intergenic 25.0%
!!! AGTTTTAAGAAGAAAGTTCA+GGG - chr6_2:59976312-59976331 Msa0922060:intron 25.0%
! TGATAAAATCTAACCTGATT+AGG + chr6_2:59976626-59976645 None:intergenic 25.0%
!!! GTAAAAAAGGAATTTTAAGG+GGG + chr6_2:59976880-59976899 None:intergenic 25.0%
!! GGTAAAAAAGGAATTTTAAG+GGG + chr6_2:59976881-59976900 None:intergenic 25.0%
!! GGGTAAAAAAGGAATTTTAA+GGG + chr6_2:59976882-59976901 None:intergenic 25.0%
!! CTTTTAGATGTATAGAATAG+GGG + chr6_2:59976902-59976921 None:intergenic 25.0%
!!! GTATGTTTTTAGATTTTACC+TGG - chr6_2:59976968-59976987 Msa0922060:five_prime_UTR 25.0%
! TTTAACGAAAAAATACTTCC+GGG + chr6_2:59977008-59977027 None:intergenic 25.0%
! CTTTAACGAAAAAATACTTC+CGG + chr6_2:59977009-59977028 None:intergenic 25.0%
! AGATATATACGGTATCTAAA+AGG - chr6_2:59977027-59977046 Msa0922060:five_prime_UTR 25.0%
!!! CACTTAATTTAATTTTGCTG+AGG + chr6_2:59977677-59977696 None:intergenic 25.0%
! TATATATCTTCAGAAGGATT+TGG + chr6_2:59977900-59977919 None:intergenic 25.0%
! TATAAAACATGGGGTAAAAT+GGG - chr6_2:59977927-59977946 Msa0922060:five_prime_UTR 25.0%
!! GTGTAGTTTTTATAAAGCTT+GGG - chr6_2:59977999-59978018 Msa0922060:five_prime_UTR 25.0%
! CATTTCCTTAATCAAACTTA+GGG + chr6_2:59978272-59978291 None:intergenic 25.0%
!! TTTGATTAAGGAAATGGATT+TGG - chr6_2:59978276-59978295 Msa0922060:intron 25.0%
! TGAAAATCATTGAGAATTGA+TGG + chr6_2:59978496-59978515 None:intergenic 25.0%
!! ATCAATTCTCAATGATTTTC+AGG - chr6_2:59978495-59978514 Msa0922060:intron 25.0%
! GTACCATCAACATATATAAA+AGG - chr6_2:59978786-59978805 Msa0922060:intron 25.0%
! AAGATATAATCGCAATCTAT+TGG - chr6_2:59979516-59979535 Msa0922060:five_prime_UTR 25.0%
! AATAATAATATACGGGAAGT+TGG - chr6_2:59979615-59979634 Msa0922060:five_prime_UTR 25.0%
! TTTATTAGGTCTGTATTACA+AGG - chr6_2:59979875-59979894 Msa0922060:five_prime_UTR 25.0%
!!! CTTTAACTTGAACTTGTAAA+TGG + chr6_2:59979911-59979930 None:intergenic 25.0%
!! CATTTACAAGTTCAAGTTAA+AGG - chr6_2:59979909-59979928 Msa0922060:five_prime_UTR 25.0%
! AAAAAATTTAAGCCATCTGT+AGG - chr6_2:59980473-59980492 Msa0922060:intron 25.0%
! ACTTGTCTTAAAATATCATC+AGG + chr6_2:59980978-59980997 None:intergenic 25.0%
TATGTTTCAATCTATGAACG+CGG - chr6_2:59975064-59975083 Msa0922060:CDS 30.0%
GAATTGAAACCTATGAAACA+TGG + chr6_2:59975222-59975241 None:intergenic 30.0%
ATAGGTTTCAATTCAATGTG+TGG - chr6_2:59975228-59975247 Msa0922060:CDS 30.0%
GGAAAATAAGCAAACAAGTA+AGG + chr6_2:59975291-59975310 None:intergenic 30.0%
!! TTTGCTTATTTTCCTCAATG+AGG - chr6_2:59975297-59975316 Msa0922060:CDS 30.0%
!! CGACAAAAAGTTATTTCTCT+TGG + chr6_2:59975359-59975378 None:intergenic 30.0%
TAACACAATTGTGACTTTAG+AGG - chr6_2:59975523-59975542 Msa0922060:intron 30.0%
AACACAATTGTGACTTTAGA+GGG - chr6_2:59975524-59975543 Msa0922060:intron 30.0%
GACATATAAGGATAAACATC+AGG + chr6_2:59975655-59975674 None:intergenic 30.0%
ACATTTCATCAACATTAGGA+TGG + chr6_2:59975708-59975727 None:intergenic 30.0%
ACTCACATTTCATCAACATT+AGG + chr6_2:59975712-59975731 None:intergenic 30.0%
CAAACTTAGGCAAATGTATT+GGG + chr6_2:59975997-59976016 None:intergenic 30.0%
TCAAACTTAGGCAAATGTAT+TGG + chr6_2:59975998-59976017 None:intergenic 30.0%
CACATTACATAACATTTGGA+TGG + chr6_2:59976256-59976275 None:intergenic 30.0%
CTTTCTTCTTAAAACTCTTC+AGG + chr6_2:59976308-59976327 None:intergenic 30.0%
!!! GAGTTTTAAGAAGAAAGTTC+AGG - chr6_2:59976311-59976330 Msa0922060:intron 30.0%
! GGGGTAAAAAAGGAATTTTA+AGG + chr6_2:59976883-59976902 None:intergenic 30.0%
GTATAGAATAGGGGTAAAAA+AGG + chr6_2:59976893-59976912 None:intergenic 30.0%
TGCTGAAGAAAAATGGAAAT+GGG - chr6_2:59977286-59977305 Msa0922060:five_prime_UTR 30.0%
TCCCACATTTGAAAAGTTAT+AGG - chr6_2:59977389-59977408 Msa0922060:five_prime_UTR 30.0%
! CCCTATAACTTTTCAAATGT+GGG + chr6_2:59977393-59977412 None:intergenic 30.0%
CCCACATTTGAAAAGTTATA+GGG - chr6_2:59977390-59977409 Msa0922060:five_prime_UTR 30.0%
! ACCCTATAACTTTTCAAATG+TGG + chr6_2:59977394-59977413 None:intergenic 30.0%
GCATTGCTACTATTTATTCT+TGG - chr6_2:59977062-59977081 Msa0922060:five_prime_UTR 30.0%
GTCTTTATTACCATTTCATC+AGG - chr6_2:59977702-59977721 Msa0922060:five_prime_UTR 30.0%
TTTATTACCATTTCATCAGG+TGG - chr6_2:59977705-59977724 Msa0922060:five_prime_UTR 30.0%
AAAATAACCACCTGATGAAA+TGG + chr6_2:59977715-59977734 None:intergenic 30.0%
GTGATAAATTCCTTCACATA+TGG - chr6_2:59977738-59977757 Msa0922060:five_prime_UTR 30.0%
! TATACCAGAGGTATAAAACA+TGG - chr6_2:59977916-59977935 Msa0922060:five_prime_UTR 30.0%
! ATACCAGAGGTATAAAACAT+GGG - chr6_2:59977917-59977936 Msa0922060:five_prime_UTR 30.0%
GTATAAAACATGGGGTAAAA+TGG - chr6_2:59977926-59977945 Msa0922060:five_prime_UTR 30.0%
! CGTGTAGTTTTTATAAAGCT+TGG - chr6_2:59977998-59978017 Msa0922060:five_prime_UTR 30.0%
TAACTCAAGCTTATAAAACC+GGG + chr6_2:59978042-59978061 None:intergenic 30.0%
CTAACTCAAGCTTATAAAAC+CGG + chr6_2:59978043-59978062 None:intergenic 30.0%
CAAACTTAGGGAAATGTATT+TGG + chr6_2:59978260-59978279 None:intergenic 30.0%
CATTTCCCTAAGTTTGATTA+AGG - chr6_2:59978264-59978283 Msa0922060:intron 30.0%
CCATTTCCTTAATCAAACTT+AGG + chr6_2:59978273-59978292 None:intergenic 30.0%
CCTAAGTTTGATTAAGGAAA+TGG - chr6_2:59978270-59978289 Msa0922060:intron 30.0%
ACCATCAAACACTAATACTA+GGG + chr6_2:59978414-59978433 None:intergenic 30.0%
AACCATCAAACACTAATACT+AGG + chr6_2:59978415-59978434 None:intergenic 30.0%
AAATCATTGAGAATTGATGG+TGG + chr6_2:59978493-59978512 None:intergenic 30.0%
AATTGATAGAAGACTACGAA+GGG + chr6_2:59978678-59978697 None:intergenic 30.0%
AAATTGATAGAAGACTACGA+AGG + chr6_2:59978679-59978698 None:intergenic 30.0%
ACATTACTATATACTGGTGA+AGG + chr6_2:59978722-59978741 None:intergenic 30.0%
! TGCCCTTTTATATATGTTGA+TGG + chr6_2:59978792-59978811 None:intergenic 30.0%
GAATTTGATCACAAAACTAG+AGG + chr6_2:59978842-59978861 None:intergenic 30.0%
CAGTAAAAGTTTCAGTTTCA+AGG + chr6_2:59978927-59978946 None:intergenic 30.0%
! GAAACTTTTACTGAGTTTCA+TGG - chr6_2:59978934-59978953 Msa0922060:intron 30.0%
TTTACTGAGTTTCATGGAAA+CGG - chr6_2:59978940-59978959 Msa0922060:intron 30.0%
ATAAATTACCATCACTCTTG+TGG + chr6_2:59979002-59979021 None:intergenic 30.0%
CAAGAGTGATGGTAATTTAT+CGG - chr6_2:59979002-59979021 Msa0922060:intron 30.0%
AAACCAAAACAACAAATGTG+AGG - chr6_2:59979032-59979051 Msa0922060:intron 30.0%
AACCAAAACAACAAATGTGA+GGG - chr6_2:59979033-59979052 Msa0922060:intron 30.0%
! CATCATCACCGTTAAAATTT+TGG + chr6_2:59979062-59979081 None:intergenic 30.0%
!! CAAAATTTTAACGGTGATGA+TGG - chr6_2:59979060-59979079 Msa0922060:intron 30.0%
! AATGATTCCCTTTTACGTTT+GGG + chr6_2:59979177-59979196 None:intergenic 30.0%
! TAATGATTCCCTTTTACGTT+TGG + chr6_2:59979178-59979197 None:intergenic 30.0%
CATTATCAGGAATGATAAAC+TGG - chr6_2:59979193-59979212 Msa0922060:intron 30.0%
! ACTTTTTAAATCAGATGCTG+TGG - chr6_2:59979271-59979290 Msa0922060:intron 30.0%
! CTTTTTAAATCAGATGCTGT+GGG - chr6_2:59979272-59979291 Msa0922060:intron 30.0%
ACAGACCTAATAAATTCTCT+CGG + chr6_2:59979869-59979888 None:intergenic 30.0%
! TTACAAGTTCAAGTTAAAGG+AGG - chr6_2:59979912-59979931 Msa0922060:five_prime_UTR 30.0%
! TACAAGTTCAAGTTAAAGGA+GGG - chr6_2:59979913-59979932 Msa0922060:five_prime_UTR 30.0%
!! GTTCAAGTTGAACATGTTAA+CGG + chr6_2:59980030-59980049 None:intergenic 30.0%
TTAACATGTTCAACTTGAAC+TGG - chr6_2:59980030-59980049 Msa0922060:five_prime_UTR 30.0%
TAACATGTTCAACTTGAACT+GGG - chr6_2:59980031-59980050 Msa0922060:five_prime_UTR 30.0%
AAATCATGCAGTTCAAATTC+AGG + chr6_2:59980059-59980078 None:intergenic 30.0%
! CTTTTTATTCACAACTGCTT+TGG + chr6_2:59980453-59980472 None:intergenic 30.0%
AAGAAACTGAAGCTTGAATT+GGG - chr6_2:59980701-59980720 Msa0922060:intron 30.0%
GAAGTTAAGTTTGGATCATT+TGG - chr6_2:59980764-59980783 Msa0922060:intron 30.0%
GTTTATCATTCACTTGTTTG+TGG - chr6_2:59980996-59981015 Msa0922060:five_prime_UTR 30.0%
! TTCTGCTTGTGCTTCTATTT+TGG - chr6_2:59974659-59974678 Msa0922060:three_prime_UTR 35.0%
! TAATTGGGTTGTTGTGAATC+AGG - chr6_2:59974837-59974856 Msa0922060:CDS 35.0%
TCTCAAATTATTTGCGGAGT+CGG + chr6_2:59975117-59975136 None:intergenic 35.0%
! GTAATTATATGTGTCGGTGT+CGG - chr6_2:59975154-59975173 Msa0922060:CDS 35.0%
GATTAGACGTGTTTAAGTGT+CGG + chr6_2:59975189-59975208 None:intergenic 35.0%
TATGAAACATGGACACTTCT+CGG + chr6_2:59975211-59975230 None:intergenic 35.0%
AATGCAATTCATCCTCATTG+AGG + chr6_2:59975312-59975331 None:intergenic 35.0%
CAATGAGGATGAATTGCATT+AGG - chr6_2:59975312-59975331 Msa0922060:CDS 35.0%
! ACACAATTGTGACTTTAGAG+GGG - chr6_2:59975525-59975544 Msa0922060:intron 35.0%
! CTTTTATTAGGACTCATTGC+AGG - chr6_2:59975589-59975608 Msa0922060:intron 35.0%
TTCCATACAGCTTCTTGATA+TGG + chr6_2:59975616-59975635 None:intergenic 35.0%
TCCTTATATGTCTCCTTCTA+TGG - chr6_2:59975663-59975682 Msa0922060:intron 35.0%
CCTTATATGTCTCCTTCTAT+GGG - chr6_2:59975664-59975683 Msa0922060:intron 35.0%
CTTATATGTCTCCTTCTATG+GGG - chr6_2:59975665-59975684 Msa0922060:intron 35.0%
TTGTTAACAAACCCCATAGA+AGG + chr6_2:59975679-59975698 None:intergenic 35.0%
GGCATGCAATAATCAAACTT+AGG + chr6_2:59976010-59976029 None:intergenic 35.0%
! AGTTTAAGTGAGTTGACCTT+CGG - chr6_2:59976079-59976098 Msa0922060:intron 35.0%
AAATCTAACCTGATTAGGAC+AGG + chr6_2:59976621-59976640 None:intergenic 35.0%
AACCAAATGTCGCAATTAGA+TGG + chr6_2:59976730-59976749 None:intergenic 35.0%
! ATCCAACACAATGAAAGTGT+TGG + chr6_2:59976768-59976787 None:intergenic 35.0%
TTCATTGTGTTGGATGTGAA+TGG - chr6_2:59976773-59976792 Msa0922060:CDS 35.0%
TGAAATATTGCGCTTGGTTT+CGG - chr6_2:59976929-59976948 Msa0922060:five_prime_UTR 35.0%
AAAACATACCTCCAGAACAT+AGG + chr6_2:59976957-59976976 None:intergenic 35.0%
CATAGTCAGCAGTATATCAT+AGG + chr6_2:59977097-59977116 None:intergenic 35.0%
CTGACTATGCATTATACTGT+TGG - chr6_2:59977108-59977127 Msa0922060:five_prime_UTR 35.0%
GTGCTGAAGAAAAATGGAAA+TGG - chr6_2:59977285-59977304 Msa0922060:five_prime_UTR 35.0%
GATCATAGTACACTCAAAAC+TGG + chr6_2:59977324-59977343 None:intergenic 35.0%
TACTCGAGAAGGAATAAGTT+TGG + chr6_2:59977346-59977365 None:intergenic 35.0%
ATTATAGTCAGTACTCGAGA+AGG + chr6_2:59977357-59977376 None:intergenic 35.0%
GGGTTAATATTAGGAACAGT+AGG - chr6_2:59977410-59977429 Msa0922060:five_prime_UTR 35.0%
! TGGTTCTGCAGTTATCTAAA+AGG - chr6_2:59977558-59977577 Msa0922060:five_prime_UTR 35.0%
ATTCTTGGCATTCTTCTTCA+AGG - chr6_2:59977608-59977627 Msa0922060:five_prime_UTR 35.0%
AATGTCAACACCATATGTGA+AGG + chr6_2:59977751-59977770 None:intergenic 35.0%
ATATACAGCTCACTTTGTTC+CGG + chr6_2:59977872-59977891 None:intergenic 35.0%
CTCTGGTATATATCTTCAGA+AGG + chr6_2:59977906-59977925 None:intergenic 35.0%
! CTTCTGAAGATATATACCAG+AGG - chr6_2:59977904-59977923 Msa0922060:five_prime_UTR 35.0%
! TACCAGAGGTATAAAACATG+GGG - chr6_2:59977918-59977937 Msa0922060:five_prime_UTR 35.0%
! ATGGGGTAAAATGGGAATTT+TGG - chr6_2:59977935-59977954 Msa0922060:five_prime_UTR 35.0%
! TGGGGTAAAATGGGAATTTT+GGG - chr6_2:59977936-59977955 Msa0922060:five_prime_UTR 35.0%
!! CGGTTTTATAAGCTTGAGTT+AGG - chr6_2:59978041-59978060 Msa0922060:five_prime_UTR 35.0%
! TTGACTTGACCTAATCGATT+TGG - chr6_2:59978337-59978356 Msa0922060:intron 35.0%
! TGACTTGACCTAATCGATTT+GGG - chr6_2:59978338-59978357 Msa0922060:intron 35.0%
!! CTAATCGATTTGGGCTTTAT+CGG - chr6_2:59978347-59978366 Msa0922060:intron 35.0%
! TTTATCGGACTGGACTAAAA+TGG - chr6_2:59978362-59978381 Msa0922060:intron 35.0%
! TTATCGGACTGGACTAAAAT+GGG - chr6_2:59978363-59978382 Msa0922060:intron 35.0%
GGGTAGTTAAAAACATCAGT+AGG + chr6_2:59978394-59978413 None:intergenic 35.0%
ACCCTAGTATTAGTGTTTGA+TGG - chr6_2:59978410-59978429 Msa0922060:intron 35.0%
AGTGACAACAAGGAAATGAA+GGG + chr6_2:59978574-59978593 None:intergenic 35.0%
ACATATATAAAAGGGCAAGC+TGG - chr6_2:59978795-59978814 Msa0922060:intron 35.0%
GAAGTAGAGTCAAAAGTTCA+TGG - chr6_2:59978879-59978898 Msa0922060:intron 35.0%
!!! GAGGGTGTCCAAAATTTTAA+CGG - chr6_2:59979051-59979070 Msa0922060:intron 35.0%
GACAATGAAAAATTCAGCAC+TGG - chr6_2:59979093-59979112 Msa0922060:intron 35.0%
TTCATTCTCCCAAACGTAAA+AGG - chr6_2:59979166-59979185 Msa0922060:intron 35.0%
TCATTCTCCCAAACGTAAAA+GGG - chr6_2:59979167-59979186 Msa0922060:intron 35.0%
CGTAAAAGGGAATCATTATC+AGG - chr6_2:59979180-59979199 Msa0922060:intron 35.0%
AATACATCCATTTGATCCTG+AGG - chr6_2:59979230-59979249 Msa0922060:intron 35.0%
TTATACTCCTCAGGATCAAA+TGG + chr6_2:59979240-59979259 None:intergenic 35.0%
! TTTGATCCTGAGGAGTATAA+AGG - chr6_2:59979240-59979259 Msa0922060:intron 35.0%
GCATCTGATTTAAAAAGTCC+TGG + chr6_2:59979269-59979288 None:intergenic 35.0%
!! ATGTGAAAACATTCTGGTTC+AGG + chr6_2:59979426-59979445 None:intergenic 35.0%
CCATTCATGTGAAAACATTC+TGG + chr6_2:59979432-59979451 None:intergenic 35.0%
! CCAGAATGTTTTCACATGAA+TGG - chr6_2:59979429-59979448 Msa0922060:intron 35.0%
!!! TAGAGCTTTAGTTTTGAGAG+CGG + chr6_2:59979668-59979687 None:intergenic 35.0%
! CAAAACTAAAGCTCTAACCT+AGG - chr6_2:59979672-59979691 Msa0922060:five_prime_UTR 35.0%
!! TTTGTTATTGTGAAGTGCCT+AGG + chr6_2:59979692-59979711 None:intergenic 35.0%
! AAGTTTGCTCCCTTGTTAAT+TGG - chr6_2:59979728-59979747 Msa0922060:five_prime_UTR 35.0%
TAGAGCCGAGAGAATTTATT+AGG - chr6_2:59979861-59979880 Msa0922060:five_prime_UTR 35.0%
AAGTTAAAGGAGGGATGATT+TGG - chr6_2:59979922-59979941 Msa0922060:five_prime_UTR 35.0%
!! ATAACAAATGGGTTGTGTTC+AGG - chr6_2:59979954-59979973 Msa0922060:five_prime_UTR 35.0%
TTGTAAGTGTCTCACTTTGA+CGG + chr6_2:59980096-59980115 None:intergenic 35.0%
!! TTCTGAAACTCCTTTACAGA+AGG - chr6_2:59980265-59980284 Msa0922060:intron 35.0%
ATCTTCTTCACCTTCTGTAA+AGG + chr6_2:59980278-59980297 None:intergenic 35.0%
TGAAATTGAGATGCAGTGAA+AGG - chr6_2:59980327-59980346 Msa0922060:intron 35.0%
TAAACTACACCAGTACATTG+CGG + chr6_2:59980521-59980540 None:intergenic 35.0%
!!! GTAGGTTTTGAATCATCAAC+AGG + chr6_2:59980581-59980600 None:intergenic 35.0%
!! ACAAGTTCTGTTTCTGTAGT+AGG + chr6_2:59980599-59980618 None:intergenic 35.0%
ACTACAGAAACAGAACTTGT+TGG - chr6_2:59980599-59980618 Msa0922060:intron 35.0%
! CTACAGAAACAGAACTTGTT+GGG - chr6_2:59980600-59980619 Msa0922060:intron 35.0%
GAAGAAACTGAAGCTTGAAT+TGG - chr6_2:59980700-59980719 Msa0922060:intron 35.0%
! CTTTGGGGATTTGACAAAAT+GGG - chr6_2:59980737-59980756 Msa0922060:intron 35.0%
! AAGTTTGGATCATTTGGTGA+TGG - chr6_2:59980770-59980789 Msa0922060:five_prime_UTR 35.0%
TTTGAGTAGACAAAACAGTG+TGG - chr6_2:59980866-59980885 Msa0922060:intron 35.0%
TGCTATCTTTGCACAGTATG+AGG + chr6_2:59974714-59974733 None:intergenic 40.0%
!! GTTGATGACTGATTGCAAAG+CGG - chr6_2:59974859-59974878 Msa0922060:CDS 40.0%
AAAGCGGAGATGATCAACAA+TGG - chr6_2:59974875-59974894 Msa0922060:CDS 40.0%
!! GAGAAGTGTCCATGTTTCAT+AGG - chr6_2:59975210-59975229 Msa0922060:CDS 40.0%
AAATGTGCGTATGTTGCAGA+AGG - chr6_2:59975428-59975447 Msa0922060:intron 40.0%
! CACAATTGTGACTTTAGAGG+GGG - chr6_2:59975526-59975545 Msa0922060:intron 40.0%
GTCCATATCAAGAAGCTGTA+TGG - chr6_2:59975611-59975630 Msa0922060:intron 40.0%
AGCTGTATGGAAGATAAGAG+TGG - chr6_2:59975624-59975643 Msa0922060:intron 40.0%
CCCATAGAAGGAGACATATA+AGG + chr6_2:59975667-59975686 None:intergenic 40.0%
ACTAGTCATGTTCGTTTCCA+GGG + chr6_2:59975791-59975810 None:intergenic 40.0%
TACTAGTCATGTTCGTTTCC+AGG + chr6_2:59975792-59975811 None:intergenic 40.0%
! AAAGTCAGACATGGTTAGTC+AGG + chr6_2:59976031-59976050 None:intergenic 40.0%
! GTTTAAGTGAGTTGACCTTC+GGG - chr6_2:59976080-59976099 Msa0922060:intron 40.0%
! TTTAAGTGAGTTGACCTTCG+GGG - chr6_2:59976081-59976100 Msa0922060:intron 40.0%
! CAAGTACTTTTGTTAGCGCT+CGG + chr6_2:59976140-59976159 None:intergenic 40.0%
AGTTGAACACATGACATTGC+AGG - chr6_2:59976199-59976218 Msa0922060:intron 40.0%
AGTAGTCATGTTCGTTTCCA+GGG + chr6_2:59976344-59976363 None:intergenic 40.0%
TAGTAGTCATGTTCGTTTCC+AGG + chr6_2:59976345-59976364 None:intergenic 40.0%
CAAGCGTAGGAGAATGTATT+GGG + chr6_2:59976587-59976606 None:intergenic 40.0%
TCAAGCGTAGGAGAATGTAT+TGG + chr6_2:59976588-59976607 None:intergenic 40.0%
ATGTCGCAATTAGATGGCTA+GGG + chr6_2:59976724-59976743 None:intergenic 40.0%
AATGTCGCAATTAGATGGCT+AGG + chr6_2:59976725-59976744 None:intergenic 40.0%
AGCCATCTAATTGCGACATT+TGG - chr6_2:59976725-59976744 Msa0922060:CDS 40.0%
!! CAACACAATGAAAGTGTTGG+AGG + chr6_2:59976765-59976784 None:intergenic 40.0%
CTCCAACACTTTCATTGTGT+TGG - chr6_2:59976763-59976782 Msa0922060:CDS 40.0%
ATTGTGTTGGATGTGAATGG+TGG - chr6_2:59976776-59976795 Msa0922060:CDS 40.0%
GGCATATCTCTAAGCAATGT+GGG + chr6_2:59976809-59976828 None:intergenic 40.0%
TGGCATATCTCTAAGCAATG+TGG + chr6_2:59976810-59976829 None:intergenic 40.0%
CGTAACGTTCAAACTACACA+TGG + chr6_2:59976830-59976849 None:intergenic 40.0%
TACTCCTGAAATATTGCGCT+TGG - chr6_2:59976923-59976942 Msa0922060:five_prime_UTR 40.0%
GAAACCAAGCGCAATATTTC+AGG + chr6_2:59976930-59976949 None:intergenic 40.0%
GAAATATTGCGCTTGGTTTC+GGG - chr6_2:59976930-59976949 Msa0922060:five_prime_UTR 40.0%
CTGGTTATGTAGTTATCTCC+CGG - chr6_2:59976987-59977006 Msa0922060:five_prime_UTR 40.0%
! TGTTGGCTATGATATACTGC+TGG - chr6_2:59977125-59977144 Msa0922060:five_prime_UTR 40.0%
! TTTGCGGTGCTGAAGAAAAA+TGG - chr6_2:59977279-59977298 Msa0922060:five_prime_UTR 40.0%
!! GTACACTCAAAACTGGTCTT+TGG + chr6_2:59977317-59977336 None:intergenic 40.0%
TTGGCATTCTTCTTCAAGGT+CGG - chr6_2:59977612-59977631 Msa0922060:five_prime_UTR 40.0%
! TTGCTGCTTGCTTAATGTGA+TGG - chr6_2:59977822-59977841 Msa0922060:five_prime_UTR 40.0%
TATACAGCTCACTTTGTTCC+GGG + chr6_2:59977871-59977890 None:intergenic 40.0%
! TACCCCATGTTTTATACCTC+TGG + chr6_2:59977923-59977942 None:intergenic 40.0%
! GGGGTAAAATGGGAATTTTG+GGG - chr6_2:59977937-59977956 Msa0922060:five_prime_UTR 40.0%
! GGGTAAAATGGGAATTTTGG+GGG - chr6_2:59977938-59977957 Msa0922060:five_prime_UTR 40.0%
! GGTAAAATGGGAATTTTGGG+GGG - chr6_2:59977939-59977958 Msa0922060:five_prime_UTR 40.0%
GCTTATAAAACCGGGTTGTA+AGG + chr6_2:59978034-59978053 None:intergenic 40.0%
CGATAAAGCCCAAATCGATT+AGG + chr6_2:59978349-59978368 None:intergenic 40.0%
GTTAAAAACATCAGTAGGCC+AGG + chr6_2:59978389-59978408 None:intergenic 40.0%
!! TCATTGAGAATTGATGGTGG+TGG + chr6_2:59978490-59978509 None:intergenic 40.0%
TCATGGCAGTGTGAAAAGAT+AGG + chr6_2:59978549-59978568 None:intergenic 40.0%
CAAGGAAATGAAGGGTTTCA+TGG + chr6_2:59978566-59978585 None:intergenic 40.0%
CAGTGACAACAAGGAAATGA+AGG + chr6_2:59978575-59978594 None:intergenic 40.0%
! TCATTTCCTTGTTGTCACTG+CGG - chr6_2:59978575-59978594 Msa0922060:intron 40.0%
AAAAAACCGCAGTGACAACA+AGG + chr6_2:59978584-59978603 None:intergenic 40.0%
TAATGACCAAGACATCTAGC+TGG + chr6_2:59978621-59978640 None:intergenic 40.0%
GTCAAAAGTTCATGGCAAAC+AGG - chr6_2:59978887-59978906 Msa0922060:intron 40.0%
TTCAGTTTCAAGGCGATCAA+GGG + chr6_2:59978917-59978936 None:intergenic 40.0%
TTTCAGTTTCAAGGCGATCA+AGG + chr6_2:59978918-59978937 None:intergenic 40.0%
TTGGTTAACCACAAGAGTGA+TGG - chr6_2:59978991-59979010 Msa0922060:intron 40.0%
!!! CACCCTCACATTTGTTGTTT+TGG + chr6_2:59979038-59979057 None:intergenic 40.0%
!! TAACGGTGATGATGGTAATG+AGG - chr6_2:59979068-59979087 Msa0922060:intron 40.0%
!! AAAATTCAGCACTGGTGTCA+AGG - chr6_2:59979101-59979120 Msa0922060:intron 40.0%
TTTGCTCCCTTGTTAATTGG+TGG - chr6_2:59979731-59979750 Msa0922060:five_prime_UTR 40.0%
CCATGACCACCAATTAACAA+GGG + chr6_2:59979740-59979759 None:intergenic 40.0%
! CCTTGTTAATTGGTGGTCAT+GGG - chr6_2:59979738-59979757 Msa0922060:five_prime_UTR 40.0%
CCTTGGCTTATGAGTTGTAA+AGG + chr6_2:59979782-59979801 None:intergenic 40.0%
CCTTTACAACTCATAAGCCA+AGG - chr6_2:59979779-59979798 Msa0922060:five_prime_UTR 40.0%
TAGGTCTGTATTACAAGGTC+TGG - chr6_2:59979880-59979899 Msa0922060:five_prime_UTR 40.0%
AGGTCTGTATTACAAGGTCT+GGG - chr6_2:59979881-59979900 Msa0922060:five_prime_UTR 40.0%
TAATTAGGGCTACAAGGGTT+AGG + chr6_2:59979985-59980004 None:intergenic 40.0%
AGTGCTAATTAGGGCTACAA+GGG + chr6_2:59979990-59980009 None:intergenic 40.0%
GTCAACTGCAGTGCTAATTA+GGG + chr6_2:59979999-59980018 None:intergenic 40.0%
! GAACATGTTAACGGATAACC+AGG + chr6_2:59980021-59980040 None:intergenic 40.0%
CTGCATCTCAATTTCACTAC+TGG + chr6_2:59980323-59980342 None:intergenic 40.0%
AATTGAGATGCAGTGAAAGG+CGG - chr6_2:59980330-59980349 Msa0922060:intron 40.0%
TGCATTTCACTTTCTGTTGC+AGG - chr6_2:59980383-59980402 Msa0922060:intron 40.0%
GTTGCAGGAAATAAACTGCA+CGG - chr6_2:59980398-59980417 Msa0922060:intron 40.0%
TGAAAACGATGACCTACAGA+TGG + chr6_2:59980488-59980507 None:intergenic 40.0%
!! TGTAGGTCATCGTTTTCAAG+TGG - chr6_2:59980490-59980509 Msa0922060:intron 40.0%
AAACTACACCAGTACATTGC+GGG + chr6_2:59980520-59980539 None:intergenic 40.0%
GAGAGTGACTCTAAATGCTT+AGG - chr6_2:59980542-59980561 Msa0922060:intron 40.0%
AATGCTTAGGCACACAAGTA+TGG - chr6_2:59980555-59980574 Msa0922060:intron 40.0%
GATGTCAAATTGCTGCAAAC+AGG - chr6_2:59980678-59980697 Msa0922060:intron 40.0%
! TGGGTTCTGCATTTTACCTT+TGG - chr6_2:59980720-59980739 Msa0922060:intron 40.0%
! GGGTTCTGCATTTTACCTTT+GGG - chr6_2:59980721-59980740 Msa0922060:intron 40.0%
! GGTTCTGCATTTTACCTTTG+GGG - chr6_2:59980722-59980741 Msa0922060:intron 40.0%
! CCATTTTGTCAAATCCCCAA+AGG + chr6_2:59980739-59980758 None:intergenic 40.0%
! CCTTTGGGGATTTGACAAAA+TGG - chr6_2:59980736-59980755 Msa0922060:intron 40.0%
!! ATTTGGTGATGGTTTCGAGA+GGG - chr6_2:59980781-59980800 Msa0922060:five_prime_UTR 40.0%
CTTCGTCACTTCTCTTTCGT+TGG + chr6_2:59974753-59974772 None:intergenic 45.0%
CAATCTATGAACGCGGATAC+CGG - chr6_2:59975071-59975090 Msa0922060:CDS 45.0%
TTTAGAGGGGGAACTGAAGT+GGG - chr6_2:59975538-59975557 Msa0922060:intron 45.0%
! TTAAGTGAGTTGACCTTCGG+GGG - chr6_2:59976082-59976101 Msa0922060:intron 45.0%
AAAACTCTTCAGGTGTCCCT+TGG + chr6_2:59976298-59976317 None:intergenic 45.0%
AAAGTTCAGGGTTCAAACCC+TGG - chr6_2:59976324-59976343 Msa0922060:intron 45.0%
GGTATGCGATAATCAAGCGT+AGG + chr6_2:59976600-59976619 None:intergenic 45.0%
ATCGCATACCTGTCCTAATC+AGG - chr6_2:59976610-59976629 Msa0922060:CDS 45.0%
TGTCGCAATTAGATGGCTAG+GGG + chr6_2:59976723-59976742 None:intergenic 45.0%
!! AAGTGTTGGAGGTTGCAAGA+AGG + chr6_2:59976754-59976773 None:intergenic 45.0%
AAGCCCCCTCAATATCTCTT+AGG - chr6_2:59976854-59976873 Msa0922060:five_prime_UTR 45.0%
CGGGAGATAACTACATAACC+AGG + chr6_2:59976989-59977008 None:intergenic 45.0%
AGTAGCAATGCTCTTCTACG+TGG + chr6_2:59977053-59977072 None:intergenic 45.0%
AGGTGTCTGTATCTGCTTGA+TGG - chr6_2:59977430-59977449 Msa0922060:five_prime_UTR 45.0%
AGTAGCAATGCTCTTCTACG+TGG + chr6_2:59977053-59977072 None:intergenic 45.0%
! ATGTGATGGAAACACACCTC+CGG - chr6_2:59977836-59977855 Msa0922060:five_prime_UTR 45.0%
!! TTGAGAATTGATGGTGGTGG+AGG + chr6_2:59978487-59978506 None:intergenic 45.0%
AAACGGCAATTGTCTTGTCG+AGG - chr6_2:59978957-59978976 Msa0922060:intron 45.0%
!! TGTCGAGGATCGTGTTGATT+TGG - chr6_2:59978972-59978991 Msa0922060:intron 45.0%
AGAAGTTTCCACAGAAGAGG+TGG + chr6_2:59979136-59979155 None:intergenic 45.0%
CTCAGAAGTTTCCACAGAAG+AGG + chr6_2:59979139-59979158 None:intergenic 45.0%
! GATCCTGAGGAGTATAAAGG+TGG - chr6_2:59979243-59979262 Msa0922060:intron 45.0%
AAGAATGCAGAACCAGACAG+TGG - chr6_2:59979318-59979337 Msa0922060:intron 45.0%
AGAATGCAGAACCAGACAGT+GGG - chr6_2:59979319-59979338 Msa0922060:intron 45.0%
! CAGTTAGCACGCTGAGATTT+TGG + chr6_2:59979571-59979590 None:intergenic 45.0%
TACGGGAAGTTGGATAGCTT+TGG - chr6_2:59979625-59979644 Msa0922060:five_prime_UTR 45.0%
!! GAGCGGTCATTTTGTAGACT+GGG + chr6_2:59979651-59979670 None:intergenic 45.0%
!! AGAGCGGTCATTTTGTAGAC+TGG + chr6_2:59979652-59979671 None:intergenic 45.0%
! CCCTTGTTAATTGGTGGTCA+TGG - chr6_2:59979737-59979756 Msa0922060:five_prime_UTR 45.0%
CCCATGACCACCAATTAACA+AGG + chr6_2:59979741-59979760 None:intergenic 45.0%
AGGATTAGAGCATGCAACCT+TGG + chr6_2:59979799-59979818 None:intergenic 45.0%
CAACATCGCAGGATTAGGAT+AGG + chr6_2:59979819-59979838 None:intergenic 45.0%
ACACACAACATCGCAGGATT+AGG + chr6_2:59979824-59979843 None:intergenic 45.0%
TATTGCACACACAACATCGC+AGG + chr6_2:59979830-59979849 None:intergenic 45.0%
CAGTGCTAATTAGGGCTACA+AGG + chr6_2:59979991-59980010 None:intergenic 45.0%
GGTCAACTGCAGTGCTAATT+AGG + chr6_2:59980000-59980019 None:intergenic 45.0%
AATTAGCACTGCAGTTGACC+TGG - chr6_2:59980000-59980019 Msa0922060:five_prime_UTR 45.0%
CACTACTGGATCCTCATACA+TGG + chr6_2:59980309-59980328 None:intergenic 45.0%
!! AAGAACAGCGCGGTTTTGTA+GGG + chr6_2:59980361-59980380 None:intergenic 45.0%
ATGGGCGAGGAAGTTAAGTT+TGG - chr6_2:59980755-59980774 Msa0922060:intron 45.0%
!! CATTTGGTGATGGTTTCGAG+AGG - chr6_2:59980780-59980799 Msa0922060:five_prime_UTR 45.0%
AGCTATCAAGCATCCATCTG+TGG - chr6_2:59980805-59980824 Msa0922060:five_prime_UTR 45.0%
GCATCCATCTGTGGATTTCA+TGG - chr6_2:59980814-59980833 Msa0922060:five_prime_UTR 45.0%
CACTCCATGAAATCCACAGA+TGG + chr6_2:59980821-59980840 None:intergenic 45.0%
CTACGAGTTCTTCCTCAGAA+TGG + chr6_2:59980896-59980915 None:intergenic 45.0%
! CTTTAGAGGGGGAACTGAAG+TGG - chr6_2:59975537-59975556 Msa0922060:intron 50.0%
GAAGTTCAAGGTTCAAGCCC+TGG - chr6_2:59975771-59975790 Msa0922060:intron 50.0%
TTGCAGATCACCCTCCAAAG+AGG - chr6_2:59976157-59976176 Msa0922060:intron 50.0%
TGGGAATTCCGCTTTCATCG+CGG - chr6_2:59976693-59976712 Msa0922060:CDS 50.0%
GGGCCTAAGAGATATTGAGG+GGG + chr6_2:59976860-59976879 None:intergenic 50.0%
GGGGCCTAAGAGATATTGAG+GGG + chr6_2:59976861-59976880 None:intergenic 50.0%
GGGGGCCTAAGAGATATTGA+GGG + chr6_2:59976862-59976881 None:intergenic 50.0%
AGGGGGCCTAAGAGATATTG+AGG + chr6_2:59976863-59976882 None:intergenic 50.0%
TGGTTTCGGGACCTATGTTC+TGG - chr6_2:59976943-59976962 Msa0922060:five_prime_UTR 50.0%
TTTCGGGACCTATGTTCTGG+AGG - chr6_2:59976946-59976965 Msa0922060:five_prime_UTR 50.0%
! TGTGATGGAAACACACCTCC+GGG - chr6_2:59977837-59977856 Msa0922060:five_prime_UTR 50.0%
TTGTTCCGGGAGATAACTCC+CGG + chr6_2:59977858-59977877 None:intergenic 50.0%
TTTGGGGGGCCTAAGAGATA+TGG - chr6_2:59977953-59977972 Msa0922060:five_prime_UTR 50.0%
AAGCCCCCTCCATATCTCTT+AGG + chr6_2:59977965-59977984 None:intergenic 50.0%
GAAGCTCTCACCTTACAACC+CGG - chr6_2:59978021-59978040 Msa0922060:five_prime_UTR 50.0%
! CGATTTGGGCTTTATCGGAC+TGG - chr6_2:59978352-59978371 Msa0922060:intron 50.0%
!! AGAATTGATGGTGGTGGAGG+TGG + chr6_2:59978484-59978503 None:intergenic 50.0%
TGGCCACCTTTATACTCCTC+AGG + chr6_2:59979249-59979268 None:intergenic 50.0%
! TGAGGAGTATAAAGGTGGCC+AGG - chr6_2:59979248-59979267 Msa0922060:intron 50.0%
GTGGGCAAGAGATGTTCTGT+CGG - chr6_2:59979290-59979309 Msa0922060:intron 50.0%
TTCGATGATGACCCACTGTC+TGG + chr6_2:59979333-59979352 None:intergenic 50.0%
AGACAGTGGGTCATCATCGA+AGG - chr6_2:59979332-59979351 Msa0922060:intron 50.0%
! GTGGTCATGGGTTCTAGTCA+TGG - chr6_2:59979750-59979769 Msa0922060:five_prime_UTR 50.0%
GATGCATCCTGCCATGTATG+AGG - chr6_2:59980295-59980314 Msa0922060:intron 50.0%
ACTGGATCCTCATACATGGC+AGG + chr6_2:59980305-59980324 None:intergenic 50.0%
!! CAAGAACAGCGCGGTTTTGT+AGG + chr6_2:59980362-59980381 None:intergenic 50.0%
GAAATGCAGCAAGAACAGCG+CGG + chr6_2:59980371-59980390 None:intergenic 50.0%
CTTGTTGGGAGAGAAAGACG+AGG - chr6_2:59980614-59980633 Msa0922060:intron 50.0%
GAGTGTAGCTGCAACGTTCA+AGG - chr6_2:59980638-59980657 Msa0922060:intron 50.0%
GGGATTTGACAAAATGGGCG+AGG - chr6_2:59980742-59980761 Msa0922060:intron 50.0%
CAGTGTGGTAAGCCATTCTG+AGG - chr6_2:59980881-59980900 Msa0922060:intron 50.0%
GAGGAAGAACTCGTAGAAGC+TGG - chr6_2:59980900-59980919 Msa0922060:intron 50.0%
ATCAGTTCCGGTGTCTGTGC+CGG + chr6_2:59975093-59975112 None:intergenic 55.0%
TGCGGAGTCGGTATCAGTTC+CGG + chr6_2:59975105-59975124 None:intergenic 55.0%
AGCGTGAGGACCTCTTTGGA+GGG + chr6_2:59976170-59976189 None:intergenic 55.0%
GGGAATTCCGCTTTCATCGC+GGG - chr6_2:59976694-59976713 Msa0922060:CDS 55.0%
CGCAATTAGATGGCTAGGGG+CGG + chr6_2:59976720-59976739 None:intergenic 55.0%
GGGGGCCTAAGAGATATGGA+GGG - chr6_2:59977957-59977976 Msa0922060:five_prime_UTR 55.0%
GGGGCCTAAGAGATATGGAG+GGG - chr6_2:59977958-59977977 Msa0922060:five_prime_UTR 55.0%
GGGCCTAAGAGATATGGAGG+GGG - chr6_2:59977959-59977978 Msa0922060:five_prime_UTR 55.0%
GGACTGGACTAAAATGGGCC+TGG - chr6_2:59978368-59978387 Msa0922060:intron 55.0%
! GTGGTGGAGGTGGTACTAAC+TGG + chr6_2:59978474-59978493 None:intergenic 55.0%
CGATCTAGCCACCTCTTCTG+TGG - chr6_2:59979125-59979144 Msa0922060:intron 55.0%
GTGGAACTCCCGCAATGTAC+TGG - chr6_2:59980509-59980528 Msa0922060:intron 55.0%
TTGACCTTCGGGGGTTCACC+AGG - chr6_2:59976091-59976110 Msa0922060:intron 60.0%
TGACCTTCGGGGGTTCACCA+GGG - chr6_2:59976092-59976111 Msa0922060:intron 60.0%
CAGCGTGAGGACCTCTTTGG+AGG + chr6_2:59976171-59976190 None:intergenic 60.0%
CTCCAAAGAGGTCCTCACGC+TGG - chr6_2:59976169-59976188 Msa0922060:intron 60.0%
TGCCAGCGTGAGGACCTCTT+TGG + chr6_2:59976174-59976193 None:intergenic 60.0%
AGAGGTCCTCACGCTGGCAA+TGG - chr6_2:59976175-59976194 Msa0922060:intron 60.0%
GAGGTCCTCACGCTGGCAAT+GGG - chr6_2:59976176-59976195 Msa0922060:intron 60.0%
CAACTCCCATTGCCAGCGTG+AGG + chr6_2:59976184-59976203 None:intergenic 60.0%
CACCTCCGGGAGTTATCTCC+CGG - chr6_2:59977850-59977869 Msa0922060:five_prime_UTR 60.0%
TTCCGGGAGATAACTCCCGG+AGG + chr6_2:59977855-59977874 None:intergenic 60.0%
GGGGGGCCTAAGAGATATGG+AGG - chr6_2:59977956-59977975 Msa0922060:five_prime_UTR 60.0%
!! CAGCGCGGTTTTGTAGGGAC+AGG + chr6_2:59980356-59980375 None:intergenic 60.0%
GCGGATACCGGCACAGACAC+CGG - chr6_2:59975083-59975102 Msa0922060:CDS 65.0%
TGACCCTGGTGAACCCCCGA+AGG + chr6_2:59976098-59976117 None:intergenic 65.0%
TTCGGGGGTTCACCAGGGTC+AGG - chr6_2:59976097-59976116 Msa0922060:intron 65.0%
TCGGGGGTTCACCAGGGTCA+GGG - chr6_2:59976098-59976117 Msa0922060:intron 65.0%
GGGTTCACCAGGGTCAGGGT+AGG - chr6_2:59976102-59976121 Msa0922060:intron 65.0%
TTAGCGCTCGGCGAGCCTTG+CGG + chr6_2:59976128-59976147 None:intergenic 65.0%
CTTGCGGCCTACCCTGACCC+TGG + chr6_2:59976112-59976131 None:intergenic 70.0%
CAGGGTCAGGGTAGGCCGCA+AGG - chr6_2:59976110-59976129 Msa0922060:intron 70.0%
GGGGCGGCCCGCGATGAAAG+CGG + chr6_2:59976704-59976723 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 59974615 59981088 59974615 ID=Msa0922060;Name=Msa0922060
chr6_2 mRNA 59974615 59981088 59974615 ID=Msa0922060-mRNA-1;Parent=Msa0922060;Name=Msa0922060-mRNA-1;_AED=0.12;_eAED=0.12;_QI=2144|1|1|1|0.75|0.4|5|214|355
chr6_2 exon 59974615 59975440 59974615 ID=Msa0922060-mRNA-1:exon:9209;Parent=Msa0922060-mRNA-1
chr6_2 exon 59976350 59978134 59976350 ID=Msa0922060-mRNA-1:exon:9208;Parent=Msa0922060-mRNA-1
chr6_2 exon 59979483 59980104 59979483 ID=Msa0922060-mRNA-1:exon:9207;Parent=Msa0922060-mRNA-1
chr6_2 exon 59980765 59980844 59980765 ID=Msa0922060-mRNA-1:exon:9206;Parent=Msa0922060-mRNA-1
chr6_2 exon 59980976 59981088 59980976 ID=Msa0922060-mRNA-1:exon:9205;Parent=Msa0922060-mRNA-1
chr6_2 five_prime_UTR 59980976 59981088 59980976 ID=Msa0922060-mRNA-1:five_prime_utr;Parent=Msa0922060-mRNA-1
chr6_2 five_prime_UTR 59980765 59980844 59980765 ID=Msa0922060-mRNA-1:five_prime_utr;Parent=Msa0922060-mRNA-1
chr6_2 five_prime_UTR 59979483 59980104 59979483 ID=Msa0922060-mRNA-1:five_prime_utr;Parent=Msa0922060-mRNA-1
chr6_2 five_prime_UTR 59976806 59978134 59976806 ID=Msa0922060-mRNA-1:five_prime_utr;Parent=Msa0922060-mRNA-1
chr6_2 CDS 59976350 59976805 59976350 ID=Msa0922060-mRNA-1:cds;Parent=Msa0922060-mRNA-1
chr6_2 CDS 59974829 59975440 59974829 ID=Msa0922060-mRNA-1:cds;Parent=Msa0922060-mRNA-1
chr6_2 three_prime_UTR 59974615 59974828 59974615 ID=Msa0922060-mRNA-1:three_prime_utr;Parent=Msa0922060-mRNA-1
Gene Sequence

>Msa0922060

ATGGCAAACAGGTCTTCCCTTGATCGCCTTGAAACTGAAACTTTTACTGAGTTTCATGGAAACGGCAATTGTCTTGTCGAGGATCGTGTTGATTTGGTTAACCACAAGAGTGATGGTAATTTATCGGACGCTAAAAACCAAAACAACAAATGTGAGGGTGTCCAAAATTTTAACGGTGATGATGGTAATGAGGATGACAATGAAAAATTCAGCACTGGTGTCAAGGACGATCTAGCCACCTCTTCTGTGGAAACTTCTGAGAATGAATTTCATTCTCCCAAACGTAAAAGGGAATCATTATCAGGAATGATAAACTGGACGAAGAATATCGCAATACATCCATTTGATCCTGAGGAGTATAAAGGTGGCCAGGACTTTTTAAATCAGATGCTGTGGGCAAGAGATGTTCTGTCGGTCAGAAAGAATGCAGAACCAGACAGTGGGTCATCATCGAAGAATTCTGAAACTCCTTTACAGAAGGTGAAGAAGATGCATCCTGCCATGTATGAGGATCCAGTAGTGAAATTGAGATGCAGTGAAAGGCGGCCTGTCCCTACAAAACCGCGCTGTTCTTGCTGCATTTCACTTTCTGTTGCAGGAAATAAACTGCACGGTTTCGTGACTGAAAACAAAAAATCAACTGCCAAAGCAGTTGTGAATAAAAAGAAAAAATTTAAGCCATCTGTAGGTCATCGTTTTCAAGTGGAACTCCCGCAATGTACTGGTGTAGTTTATGAGAGTGACTCTAAATGCTTAGGCACACAAGTATGGCCTGTTGATGATTCAAAACCTACTACAGAAACAGAACTTGTTGGGAGAGAAAGACGAGGAGAGTGTAGCTGCAACGTTCAAGGTTCTGTTGACTGTGTAAGATGTCAAATTGCTGCAAACAGGAAGAAACTGAAGCTTGAATTGGGTTCTGCATTTTACCTTTGGGGATTTGACAAAATGGGCGAGGAAGTTAAGTTTGGATCATTTGGTGATGGTTTCGAGAGGGAAGCTATCAAGCATCCATCTGTGGATTTCATGGAGTGTTTAGAGAACACGCAATGCTTTGATTTTGAGTAG
Protein sequence

>Msa0922060

MANRSSLDRLETETFTEFHGNGNCLVEDRVDLVNHKSDGNLSDAKNQNNKCEGVQNFNGDDGNEDDNEKFSTGVKDDLATSSVETSENEFHSPKRKRESLSGMINWTKNIAIHPFDPEEYKGGQDFLNQMLWARDVLSVRKNAEPDSGSSSKNSETPLQKVKKMHPAMYEDPVVKLRCSERRPVPTKPRCSCCISLSVAGNKLHGFVTENKKSTAKAVVNKKKKFKPSVGHRFQVELPQCTGVVYESDSKCLGTQVWPVDDSKPTTETELVGRERRGECSCNVQGSVDCVRCQIAANRKKLKLELGSAFYLWGFDKMGEEVKFGSFGDGFEREAIKHPSVDFMECLENTQCFDFE*