AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0960850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0960850 MtrunA17_Chr6g0479271 86.018 329 37 3 28 355 8 328 0.0 531
Msa0960850 MtrunA17_Chr8g0387181 57.022 356 82 8 29 323 177 522 1.04e-109 333
Msa0960850 MtrunA17_Chr8g0387181 72.973 37 10 0 319 355 592 628 1.00e-11 66.2
Msa0960850 MtrunA17_Chr8g0387141 57.751 329 79 10 29 321 184 488 3.01e-103 315
Msa0960850 MtrunA17_Chr8g0387141 75.676 37 9 0 319 355 560 596 1.52e-11 65.5
Msa0960850 MtrunA17_Chr5g0420461 79.397 199 23 1 157 355 17 197 1.43e-99 292
Msa0960850 MtrunA17_Chr1g0186281 55.063 316 108 8 30 328 186 484 2.09e-92 287
Msa0960850 MtrunA17_Chr1g0186191 53.939 330 102 9 30 328 184 494 3.34e-92 287
Msa0960850 MtrunA17_Chr1g0186261 53.943 317 112 8 30 328 187 487 4.53e-90 281
Msa0960850 MtrunA17_Chr8g0387161 55.882 238 37 6 103 321 1 189 3.96e-72 226
Msa0960850 MtrunA17_Chr8g0387161 75.676 37 9 0 319 355 261 297 4.14e-11 63.2
Msa0960850 MtrunA17_Chr7g0248041 31.399 293 180 9 41 322 201 483 5.32e-27 112
Msa0960850 MtrunA17_Chr8g0348691 37.714 175 91 6 164 322 1 173 2.44e-26 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0960850 AT4G11400.2 29.514 288 155 9 71 321 195 471 2.96e-26 110
Msa0960850 AT4G11400.1 29.514 288 155 9 71 321 195 471 2.96e-26 110
Msa0960850 AT2G46040.3 30.924 249 136 6 83 319 232 456 1.68e-25 107
Msa0960850 AT2G46040.1 30.924 249 136 6 83 319 232 456 1.68e-25 107
Msa0960850 AT2G46040.2 30.924 249 136 6 83 319 246 470 1.84e-25 107
Msa0960850 AT5G04110.4 33.083 133 77 4 212 332 344 476 2.11e-11 65.5
Msa0960850 AT5G04110.1 33.083 133 77 4 212 332 344 476 2.29e-11 65.5
Msa0960850 AT5G04110.3 33.083 133 77 4 212 332 344 476 2.29e-11 65.5
Msa0960850 AT5G04110.2 33.083 133 77 4 212 332 345 477 2.40e-11 65.5

Find 199 sgRNAs with CRISPR-Local

Find 441 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCATCACCGTTAAAATTT+TGG 0.115734 6_3:+81036745 None:intergenic
CACCCTCACATTTGTTGTTT+TGG 0.131375 6_3:+81036769 None:intergenic
TCCTTATATGTCTCCTTCTA+TGG 0.146412 6_3:-81040109 Msa0960850:five_prime_UTR
ATGGGGTAAAATGGGAATTT+TGG 0.174593 6_3:-81037870 Msa0960850:five_prime_UTR
TTCATTCTCCCAAACGTAAA+AGG 0.179524 6_3:-81036638 Msa0960850:CDS
CAAACTTAGGGAAATGTATT+TGG 0.189039 6_3:+81037548 None:intergenic
TTCTGCTTGTGCTTCTATTT+TGG 0.197746 6_3:-81041118 Msa0960850:five_prime_UTR
TGCATTTCACTTTCTGTTGC+AGG 0.241637 6_3:-81035443 Msa0960850:CDS
TGACATGAAAATCTTATATA+TGG 0.248384 6_3:+81037592 None:intergenic
TTTATCGGACTGGACTAAAA+TGG 0.250700 6_3:-81037441 Msa0960850:five_prime_UTR
GTATAAAACATGGGGTAAAA+TGG 0.255054 6_3:-81037879 Msa0960850:five_prime_UTR
GTACCATCAACATATATAAA+AGG 0.256363 6_3:-81037018 Msa0960850:five_prime_UTR
TTCCATACAGCTTCTTGATA+TGG 0.274256 6_3:+81040159 None:intergenic
CCTTTGGGGATTTGACAAAA+TGG 0.297533 6_3:-81035090 Msa0960850:CDS
GAAGAAACTGAAGCTTGAAT+TGG 0.300868 6_3:-81035126 Msa0960850:CDS
CTAATCGATTTGGGCTTTAT+CGG 0.300905 6_3:-81037456 Msa0960850:five_prime_UTR
ACAAGTTCTGTTTCTGTAGT+AGG 0.308191 6_3:+81035230 None:intergenic
TTGACTTGACCTAATCGATT+TGG 0.314487 6_3:-81037466 Msa0960850:five_prime_UTR
GCATTGCTACTATTTATTCT+TGG 0.315728 6_3:-81038212 Msa0960850:five_prime_UTR
TACTAGTCATGTTCGTTTCC+AGG 0.316810 6_3:+81039983 None:intergenic
CCTAAGTTTGATCAAGGAAA+TGG 0.321717 6_3:-81037535 Msa0960850:five_prime_UTR
TTTGATCAAGGAAATGGATT+TGG 0.323594 6_3:-81037529 Msa0960850:five_prime_UTR
TATATATCTTCAGAAGGATT+TGG 0.326608 6_3:+81037908 None:intergenic
TGGTTCTGCAGTTATCTAAA+AGG 0.332136 6_3:-81038247 Msa0960850:intron
TGACTTGACCTAATCGATTT+GGG 0.335524 6_3:-81037465 Msa0960850:five_prime_UTR
GAAGTTAAGTTTGGATCATT+TGG 0.345699 6_3:-81035062 Msa0960850:CDS
GTTAGAAACTTACTATGTTT+AGG 0.347014 6_3:+81040849 None:intergenic
CAGTAAAAGTTTCAGTTTCA+AGG 0.348216 6_3:+81036880 None:intergenic
CCTTATATGTCTCCTTCTAT+GGG 0.352549 6_3:-81040108 Msa0960850:five_prime_UTR
ACCCTAGTATTAGTGTTTGA+TGG 0.354229 6_3:-81037393 Msa0960850:five_prime_UTR
CGTAAAAGGGAATCATTATC+AGG 0.354620 6_3:-81036624 Msa0960850:CDS
ATATACAGCTCCCTTTGTTC+CGG 0.358404 6_3:+81037936 None:intergenic
TCAAACTTAGGCAAATGTAT+TGG 0.361149 6_3:+81039777 None:intergenic
CCATTTCCTTGATCAAACTT+AGG 0.361990 6_3:+81037535 None:intergenic
AATGCTTAGGCACACAAGTA+TGG 0.365629 6_3:-81035271 Msa0960850:CDS
ACTCACATTTCATCAACATT+AGG 0.371368 6_3:+81040063 None:intergenic
CCCATAGAAGGAGACATATA+AGG 0.375367 6_3:+81040108 None:intergenic
CAAACTTAGGCAAATGTATT+GGG 0.375971 6_3:+81039778 None:intergenic
TGCCAGCGTGAGGACCTCTT+TGG 0.376327 6_3:+81039601 None:intergenic
TATAAAACATGGGGTAAAAT+GGG 0.377359 6_3:-81037878 Msa0960850:five_prime_UTR
GCATCCATCTGTGGATTTCA+TGG 0.379025 6_3:-81035012 Msa0960850:CDS
ATGGGCGAGGAAGTTAAGTT+TGG 0.380276 6_3:-81035071 Msa0960850:CDS
CATTATCAGGAATGATAAAC+TGG 0.390695 6_3:-81036611 Msa0960850:CDS
CATTTCCTTGATCAAACTTA+GGG 0.391599 6_3:+81037536 None:intergenic
ATTCTTGGCATTCTTCTTCA+AGG 0.392341 6_3:-81038197 Msa0960850:intron
CAAGGAAATGAAGGGTTTCA+TGG 0.393363 6_3:+81037240 None:intergenic
TATACAGCTCCCTTTGTTCC+GGG 0.393916 6_3:+81037937 None:intergenic
TGTCGAGGATCGTGTTGATT+TGG 0.396855 6_3:-81036832 Msa0960850:CDS
TTGTTAACAAACCCCATAGA+AGG 0.401809 6_3:+81040096 None:intergenic
CTGCATCTCAATTTCACTAC+TGG 0.410524 6_3:+81035506 None:intergenic
GTTTAAGTGAGTTGACCTTC+GGG 0.413198 6_3:-81039692 Msa0960850:five_prime_UTR
AAAGTCAGACATGGTTAGTC+AGG 0.413848 6_3:+81039744 None:intergenic
CTAACTCAAGCTTATAAAAC+CGG 0.415744 6_3:+81037765 None:intergenic
AGTTTAAGTGAGTTGACCTT+CGG 0.420584 6_3:-81039693 Msa0960850:five_prime_UTR
CATTTAACTATACATTACTT+TGG 0.420970 6_3:-81038038 Msa0960850:five_prime_UTR
GCTTATAAAACCGGGTTGTA+AGG 0.421019 6_3:+81037774 None:intergenic
GATATAACATTACTATATAC+TGG 0.422649 6_3:+81037079 None:intergenic
GTCAAAAGTTCATGGCAAAC+AGG 0.430962 6_3:-81036917 Msa0960850:exon
CAAGAGTGATGGTAATTTAT+CGG 0.432110 6_3:-81036802 Msa0960850:CDS
CTTTGGGGATTTGACAAAAT+GGG 0.434572 6_3:-81035089 Msa0960850:CDS
GATGTCAAATTGCTGCAAAC+AGG 0.434612 6_3:-81035148 Msa0960850:CDS
CATTTCCCTAAGTTTGATCA+AGG 0.441860 6_3:-81037541 Msa0960850:five_prime_UTR
GTGGTGGAGGTGGTACTAAC+TGG 0.443388 6_3:+81037332 None:intergenic
CGATAAAGCCCAAATCGATT+AGG 0.443626 6_3:+81037457 None:intergenic
GAAGTAGAGTCAAAAGTTCA+TGG 0.446925 6_3:-81036925 Msa0960850:exon
TTATACTCCTCAGGATCAAA+TGG 0.449138 6_3:+81036567 None:intergenic
AATCTGTGAATAATATCTAA+TGG 0.449540 6_3:-81037158 Msa0960850:five_prime_UTR
TTTGATCCTGAGGAGTATAA+AGG 0.450132 6_3:-81036564 Msa0960850:CDS
TGAAAATCATTGAGAATTGA+TGG 0.453425 6_3:+81037310 None:intergenic
TTTACTGAGTTTCATGGAAA+CGG 0.454608 6_3:-81036864 Msa0960850:CDS
CGATTTGGGCTTTATCGGAC+TGG 0.454922 6_3:-81037451 Msa0960850:five_prime_UTR
GTGATAAATTCCTTCACATA+TGG 0.459467 6_3:-81038067 Msa0960850:five_prime_UTR
CTACAGAAACAGAACTTGTT+GGG 0.459894 6_3:-81035226 Msa0960850:CDS
AACCATCAAACACTAATACT+AGG 0.460538 6_3:+81037391 None:intergenic
AAGAAACTGAAGCTTGAATT+GGG 0.460548 6_3:-81035125 Msa0960850:CDS
TAGTTACCAGCTAGAGGTCT+TGG 0.460751 6_3:-81037191 Msa0960850:five_prime_UTR
ATCTTTAAGAATGAAGTTCA+AGG 0.460830 6_3:-81040013 Msa0960850:five_prime_UTR
TATAATTTAGAATTTGAGTT+GGG 0.461279 6_3:+81037741 None:intergenic
GTCCATATCAAGAAGCTGTA+TGG 0.463848 6_3:-81040161 Msa0960850:five_prime_UTR
AAACTACACCAGTACATTGC+GGG 0.464290 6_3:+81035309 None:intergenic
TTATCGGACTGGACTAAAAT+GGG 0.468775 6_3:-81037440 Msa0960850:five_prime_UTR
CAGCGTGAGGACCTCTTTGG+AGG 0.470122 6_3:+81039604 None:intergenic
GTTTATCATTCACTTGTTTG+TGG 0.470731 6_3:-81034831 Msa0960850:three_prime_UTR
GAGGTCCTCACGCTGGCAAT+GGG 0.471561 6_3:-81039596 Msa0960850:five_prime_UTR
TCATGGCAGTGTGAAAAGAT+AGG 0.472141 6_3:+81037257 None:intergenic
TTGCTGCTTGCTTAATGTGA+TGG 0.473325 6_3:-81037983 Msa0960850:five_prime_UTR
TACCATCAACATATATAAAA+GGG 0.476086 6_3:-81037017 Msa0960850:five_prime_UTR
ACTACAGAAACAGAACTTGT+TGG 0.476498 6_3:-81035227 Msa0960850:CDS
GTGGAACTCCCGCAATGTAC+TGG 0.476663 6_3:-81035317 Msa0960850:CDS
TTCGATGATGACCCACTGTC+TGG 0.477069 6_3:+81036474 None:intergenic
TCATTCTCCCAAACGTAAAA+GGG 0.477895 6_3:-81036637 Msa0960850:CDS
TTTCAGTTTCAAGGCGATCA+AGG 0.482418 6_3:+81036889 None:intergenic
TGGCCACCTTTATACTCCTC+AGG 0.485872 6_3:+81036558 None:intergenic
AGAGGTCCTCACGCTGGCAA+TGG 0.487083 6_3:-81039597 Msa0960850:five_prime_UTR
GACATATAAGGATAAACATC+AGG 0.491233 6_3:+81040120 None:intergenic
CAGTGACAACAAGGAAATGA+AGG 0.492989 6_3:+81037231 None:intergenic
CTACGAGTTCTTCCTCAGAA+TGG 0.493368 6_3:+81034933 None:intergenic
GAGTGTAGCTGCAACGTTCA+AGG 0.494639 6_3:-81035188 Msa0960850:CDS
ATCTTCTTCACCTTCTGTAA+AGG 0.495424 6_3:+81035551 None:intergenic
TGCTACCTTTGCACAGTATG+AGG 0.495793 6_3:+81041066 None:intergenic
TTGTTCCGGGAGATAACTCC+CGG 0.497067 6_3:+81037950 None:intergenic
ACTAGTCATGTTCGTTTCCA+GGG 0.500474 6_3:+81039984 None:intergenic
CAAGTACCTTTGTTAGCGCT+CGG 0.506028 6_3:+81039635 None:intergenic
CACCTCCGGGAGTTATCTCC+CGG 0.506086 6_3:-81037955 Msa0960850:five_prime_UTR
ACTTGTCTTAAAATATCATC+AGG 0.507538 6_3:+81034852 None:intergenic
ACCATCAAACACTAATACTA+GGG 0.512056 6_3:+81037392 None:intergenic
GAGAGTGACTCTAAATGCTT+AGG 0.519975 6_3:-81035284 Msa0960850:CDS
AGAATTGATGGTGGTGGAGG+TGG 0.521806 6_3:+81037322 None:intergenic
GATGCATCCTGCCATGTATG+AGG 0.522667 6_3:-81035531 Msa0960850:CDS
GAAGTTCAAGGTTCAAGCCC+TGG 0.523038 6_3:-81040001 Msa0960850:five_prime_UTR
AAGTTTGGATCATTTGGTGA+TGG 0.523787 6_3:-81035056 Msa0960850:CDS
GAGTTATCTCCCGGAACAAA+GGG 0.525995 6_3:-81037946 Msa0960850:five_prime_UTR
ATAAATTACCATCACTCTTG+TGG 0.532243 6_3:+81036805 None:intergenic
TTAAGTGGAGTATGATTGAT+CGG 0.537687 6_3:+81041165 None:intergenic
TGAGGAGTATAAAGGTGGCC+AGG 0.539042 6_3:-81036556 Msa0960850:CDS
CAAATTCTAAATTATATACA+AGG 0.539254 6_3:-81037734 Msa0960850:five_prime_UTR
GGACTGGACTAAAATGGGCC+TGG 0.541149 6_3:-81037435 Msa0960850:five_prime_UTR
CACTACTGGATCCTCATACA+TGG 0.542824 6_3:+81035520 None:intergenic
CTCAGAAGTTTCCACAGAAG+AGG 0.547333 6_3:+81036668 None:intergenic
ACATATATAAAAGGGCAAGC+TGG 0.548326 6_3:-81037009 Msa0960850:five_prime_UTR
TTGAGAATTGATGGTGGTGG+AGG 0.549041 6_3:+81037319 None:intergenic
TTCTGAAACTCCTTTACAGA+AGG 0.551096 6_3:-81035561 Msa0960850:CDS
CAGGGTCAGGGTAGGCCGCA+AGG 0.553162 6_3:-81039662 Msa0960850:five_prime_UTR
AGTTGAACACATGACATTGC+AGG 0.555423 6_3:-81039573 Msa0960850:intron
ATGTGATGGAAACACACCTC+CGG 0.557626 6_3:-81037969 Msa0960850:five_prime_UTR
ATGTATTAGTTACCAGCTAG+AGG 0.561179 6_3:-81037197 Msa0960850:five_prime_UTR
TTCAGTTTCAAGGCGATCAA+GGG 0.564552 6_3:+81036890 None:intergenic
GGGTTCACCAGGGTCAGGGT+AGG 0.566413 6_3:-81039670 Msa0960850:five_prime_UTR
GGAGTTATCTCCCGGAACAA+AGG 0.566680 6_3:-81037947 Msa0960850:five_prime_UTR
CTTGCGGCCTACCCTGACCC+TGG 0.566957 6_3:+81039663 None:intergenic
AGCGTGAGGACCTCTTTGGA+GGG 0.568117 6_3:+81039605 None:intergenic
TGTGATGGAAACACACCTCC+GGG 0.570064 6_3:-81037968 Msa0960850:five_prime_UTR
ATATAATTTAGAATTTGAGT+TGG 0.570361 6_3:+81037740 None:intergenic
AAAATTCAGCACTGGTGTCA+AGG 0.573154 6_3:-81036703 Msa0960850:CDS
CGATCTAGCCACCTCTTCTG+TGG 0.575815 6_3:-81036679 Msa0960850:CDS
TTGGTTAACCACAAGAGTGA+TGG 0.581825 6_3:-81036813 Msa0960850:CDS
AGCCAAAACAACAAATGTGA+GGG 0.581913 6_3:-81036771 Msa0960850:CDS
CTTATATGTCTCCTTCTATG+GGG 0.582249 6_3:-81040107 Msa0960850:five_prime_UTR
ACTGGATCCTCATACATGGC+AGG 0.586396 6_3:+81035524 None:intergenic
TAATGACCAAGACCTCTAGC+TGG 0.589246 6_3:+81037185 None:intergenic
TAACGGTGATGATGGTAATG+AGG 0.590152 6_3:-81036736 Msa0960850:CDS
CTCCAAAGAGGTCCTCACGC+TGG 0.590811 6_3:-81039603 Msa0960850:five_prime_UTR
AAGAATGCAGAACCAGACAG+TGG 0.593873 6_3:-81036486 Msa0960850:CDS
ACATTTCATCAACATTAGGA+TGG 0.594673 6_3:+81040067 None:intergenic
GGCATGCAATAATCAAACTT+AGG 0.595326 6_3:+81039765 None:intergenic
TGAAATTGAGATGCAGTGAA+AGG 0.595942 6_3:-81035499 Msa0960850:CDS
GTTGCAGGAAATAAAGTGCA+CGG 0.596234 6_3:-81035428 Msa0960850:CDS
GAATTTGATCACAAAACTAG+AGG 0.597569 6_3:+81036965 None:intergenic
CACTCCATGAAATCCACAGA+TGG 0.598826 6_3:+81035008 None:intergenic
GGGCCTAAGAGATATGGAGG+GGG 0.602058 6_3:-81037846 Msa0960850:five_prime_UTR
GGGATTTGACAAAATGGGCG+AGG 0.602480 6_3:-81035084 Msa0960850:CDS
AGAAGTTTCCACAGAAGAGG+TGG 0.603484 6_3:+81036671 None:intergenic
AAAGCATAATAATCTAAACT+AGG 0.605328 6_3:+81034801 None:intergenic
TTAAGTGAGTTGACCTTCGG+GGG 0.606710 6_3:-81039690 Msa0960850:five_prime_UTR
CTCTGGTATATATCTTCAGA+AGG 0.607599 6_3:+81037902 None:intergenic
TATACCAGAGGTATAAAACA+TGG 0.608087 6_3:-81037889 Msa0960850:five_prime_UTR
AATTGATAAAAGACTACGAA+GGG 0.612459 6_3:+81037129 None:intergenic
AATGTCAACACCATATGTGA+AGG 0.613976 6_3:+81038057 None:intergenic
ATTTAAAATGACAGTAAACA+AGG 0.614464 6_3:+81039926 None:intergenic
ACATTACTATATACTGGTGA+AGG 0.614663 6_3:+81037085 None:intergenic
GGGGCCTAAGAGATATGGAG+GGG 0.615643 6_3:-81037847 Msa0960850:five_prime_UTR
TTAGCGCTCGGCAAGCCTTG+CGG 0.617730 6_3:+81039647 None:intergenic
TTGCAGATCACCCTCCAAAG+AGG 0.619395 6_3:-81039615 Msa0960850:five_prime_UTR
AAGCCAAAACAACAAATGTG+AGG 0.619730 6_3:-81036772 Msa0960850:CDS
CAACTCCCATTGCCAGCGTG+AGG 0.620295 6_3:+81039591 None:intergenic
ATACCAGAGGTATAAAACAT+GGG 0.621785 6_3:-81037888 Msa0960850:five_prime_UTR
GAAGCTCTCACCTTACAACC+CGG 0.624116 6_3:-81037784 Msa0960850:five_prime_UTR
CAGTGTGGTAAGCCATTCTG+AGG 0.625655 6_3:-81034945 Msa0960850:three_prime_UTR
TGAAAACGATGACCTACAGA+TGG 0.625658 6_3:+81035341 None:intergenic
AGACAGTGGGTCATCATCGA+AGG 0.626066 6_3:-81036472 Msa0960850:intron
GGCTTGCCGAGCGCTAACAA+AGG 0.626250 6_3:-81039641 Msa0960850:five_prime_UTR
CATTTGGTGATGGTTTCGAG+AGG 0.630151 6_3:-81035046 Msa0960850:CDS
AATACATCCATTTGATCCTG+AGG 0.631025 6_3:-81036574 Msa0960850:CDS
AGCTATCAAGCATCCATCTG+TGG 0.633077 6_3:-81035021 Msa0960850:CDS
CAGTACCTCATACTGTGCAA+AGG 0.633527 6_3:-81041071 Msa0960850:intron
AGCTGTATGGAAGATAAGAG+TGG 0.635714 6_3:-81040148 Msa0960850:five_prime_UTR
AGAATGCAGAACCAGACAGT+GGG 0.644123 6_3:-81036485 Msa0960850:CDS
TCATTGAGAATTGATGGTGG+TGG 0.644339 6_3:+81037316 None:intergenic
TAACTCAAGCTTATAAAACC+GGG 0.646677 6_3:+81037766 None:intergenic
AGTGACAACAAGGAAATGAA+GGG 0.647243 6_3:+81037232 None:intergenic
TTTAAGTGAGTTGACCTTCG+GGG 0.652377 6_3:-81039691 Msa0960850:five_prime_UTR
AAACGGCAATTGTCTTGTCG+AGG 0.655256 6_3:-81036847 Msa0960850:CDS
TCATTTCCTTGTTGTCACTG+CGG 0.657072 6_3:-81037228 Msa0960850:five_prime_UTR
TACCAGAGGTATAAAACATG+GGG 0.660109 6_3:-81037887 Msa0960850:five_prime_UTR
GATCCTGAGGAGTATAAAGG+TGG 0.663919 6_3:-81036561 Msa0960850:CDS
ATTTGGTGATGGTTTCGAGA+GGG 0.668136 6_3:-81035045 Msa0960850:CDS
GTGGGCAAGAGATGTTCTGT+CGG 0.673366 6_3:-81036514 Msa0960850:CDS
TAAACTACACCAGTACATTG+CGG 0.676923 6_3:+81035308 None:intergenic
AATTGAGATGCAGTGAAAGG+CGG 0.677176 6_3:-81035496 Msa0960850:CDS
CTTGTTGGGAGAGAAAGACG+AGG 0.678364 6_3:-81035212 Msa0960850:CDS
AAAGCGGAGATGATCAACAA+TGG 0.687050 6_3:-81040903 Msa0960850:five_prime_UTR
AGTAGCAATGCTCTTCTACG+TGG 0.702940 6_3:+81038224 None:intergenic
CTTCTGAAGATATATACCAG+AGG 0.718667 6_3:-81037901 Msa0960850:five_prime_UTR
GTTGATGACTGATTGCAAAG+CGG 0.741293 6_3:-81040919 Msa0960850:five_prime_UTR
AAATTGATAAAAGACTACGA+AGG 0.744769 6_3:+81037128 None:intergenic
TTTGAGTAGACAAAACAGTG+TGG 0.748066 6_3:-81034960 Msa0960850:exon
TTCCGGGAGATAACTCCCGG+AGG 0.749314 6_3:+81037953 None:intergenic
AAATCATTGAGAATTGATGG+TGG 0.754340 6_3:+81037313 None:intergenic
GAAATGCAGCAAGAACAGCG+CGG 0.851698 6_3:+81035458 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGAATAATTTTTTTTAC+AGG + chr6_3:81036541-81036560 None:intergenic 10.0%
!!! AAAGATTAATATATTTTGTT+CGG - chr6_3:81036801-81036820 Msa0960850:CDS 10.0%
!!! AAATTCTTTTATACATTTTA+TGG - chr6_3:81037366-81037385 Msa0960850:five_prime_UTR 10.0%
!!! AAGATTTTGTAATTTTAAAA+TGG + chr6_3:81038287-81038306 None:intergenic 10.0%
!! AAAAAAAAAAATCAAACTTA+GGG + chr6_3:81038434-81038453 None:intergenic 10.0%
!! AAAAAAAAAAAATCAAACTT+AGG + chr6_3:81038435-81038454 None:intergenic 10.0%
!!! TGATTTTTTTTTTTTATAGT+AGG - chr6_3:81038440-81038459 Msa0960850:intron 10.0%
!!! ATTTCTAATCTTTTTGTAAT+TGG - chr6_3:81034973-81034992 Msa0960850:exon 15.0%
!!! TTTCTAATCTTTTTGTAATT+GGG - chr6_3:81034974-81034993 Msa0960850:CDS 15.0%
!! ATAACAATCTATAATACTAA+AGG + chr6_3:81035197-81035216 None:intergenic 15.0%
!! CATAAATAAACACAAATAAA+AGG + chr6_3:81035566-81035585 None:intergenic 15.0%
!!! TAAGATTTGTAATTTTAAAC+TGG + chr6_3:81036064-81036083 None:intergenic 15.0%
!!! ATTTTTATATTGTCTATACA+AGG - chr6_3:81036095-81036114 Msa0960850:intron 15.0%
!!! TTTATTTTATTGTTTTTCCA+AGG - chr6_3:81036436-81036455 Msa0960850:intron 15.0%
!!! TTATTTTATTGTTTTTCCAA+GGG - chr6_3:81036437-81036456 Msa0960850:intron 15.0%
!!! AAGATTTTGTAATTTTAAAC+TGG + chr6_3:81036616-81036635 None:intergenic 15.0%
!!! AACGTCTTATATATTTTAAA+AGG + chr6_3:81036663-81036682 None:intergenic 15.0%
!!! TTTTTCGTTAAAGATATATA+CGG - chr6_3:81037142-81037161 Msa0960850:five_prime_UTR 15.0%
!! CATTATAAATTACATTATGT+AGG + chr6_3:81037295-81037314 None:intergenic 15.0%
!! CTACATAATGTAATTTATAA+TGG - chr6_3:81037293-81037312 Msa0960850:five_prime_UTR 15.0%
!! ATATAAACAAGATTTAGAAA+TGG + chr6_3:81037337-81037356 None:intergenic 15.0%
!!! ATTTCTAAATCTTGTTTATA+TGG - chr6_3:81037336-81037355 Msa0960850:five_prime_UTR 15.0%
!!! TTTCTAAATCTTGTTTATAT+GGG - chr6_3:81037337-81037356 Msa0960850:five_prime_UTR 15.0%
!!! TATAATTTAGAATTTGAGTT+GGG + chr6_3:81038192-81038211 None:intergenic 15.0%
!!! ATATAATTTAGAATTTGAGT+TGG + chr6_3:81038193-81038212 None:intergenic 15.0%
!! CAAATTCTAAATTATATACA+AGG - chr6_3:81038196-81038215 Msa0960850:intron 15.0%
!! AAAAAAAAAATCAAACTTAG+GGG + chr6_3:81038433-81038452 None:intergenic 15.0%
!!! GAATTTATGTGTATTATTTT+AGG + chr6_3:81039675-81039694 None:intergenic 15.0%
!! GTTAATACAGTAATAATATA+CGG - chr6_3:81039733-81039752 Msa0960850:five_prime_UTR 15.0%
!! TTAATACAGTAATAATATAC+GGG - chr6_3:81039734-81039753 Msa0960850:five_prime_UTR 15.0%
!! TGGAAAATAAAAATAACAAA+TGG - chr6_3:81040046-81040065 Msa0960850:five_prime_UTR 15.0%
!! GGAAAATAAAAATAACAAAT+GGG - chr6_3:81040047-81040066 Msa0960850:five_prime_UTR 15.0%
!!! TTTTTTTGAAGAAAATATCA+TGG + chr6_3:81040338-81040357 None:intergenic 15.0%
!!! CTATGTTTAATTTTGTTAAG+TGG + chr6_3:81034783-81034802 None:intergenic 20.0%
!! GAAGAAAAAAATTGATACAA+GGG + chr6_3:81035109-81035128 None:intergenic 20.0%
!! AGAAGAAAAAAATTGATACA+AGG + chr6_3:81035110-81035129 None:intergenic 20.0%
!!! CAATTTTTTTCTTCTTTTTG+TGG - chr6_3:81035115-81035134 Msa0960850:CDS 20.0%
!! TATAATTACACTGAATTACA+TGG + chr6_3:81035296-81035315 None:intergenic 20.0%
!!! AGTTGTTCATTATTTTCTAA+GGG - chr6_3:81035887-81035906 Msa0960850:intron 20.0%
!!! AAGGAAGCATTTTATTTTAT+AGG + chr6_3:81035988-81036007 None:intergenic 20.0%
!!! ATTTAAAATGACAGTAAACA+AGG + chr6_3:81036007-81036026 None:intergenic 20.0%
!! AATAAAAATAAAGTCAGACA+TGG + chr6_3:81036198-81036217 None:intergenic 20.0%
!!! TCTTTTAGATGTATAGAATA+GGG + chr6_3:81037030-81037049 None:intergenic 20.0%
!!! ATCTTTTAGATGTATAGAAT+AGG + chr6_3:81037031-81037050 None:intergenic 20.0%
!!! TTCTAAATCTTGTTTATATG+GGG - chr6_3:81037338-81037357 Msa0960850:five_prime_UTR 20.0%
!!! GTTATAAGAAACAAATTTTG+CGG - chr6_3:81037388-81037407 Msa0960850:five_prime_UTR 20.0%
!! AAAGTTATAGGGTTAATATT+AGG - chr6_3:81037526-81037545 Msa0960850:five_prime_UTR 20.0%
!! ATGTAAAATTGTTCTCTAAA+TGG - chr6_3:81037663-81037682 Msa0960850:five_prime_UTR 20.0%
!! CATTTAACTATACATTACTT+TGG - chr6_3:81037892-81037911 Msa0960850:five_prime_UTR 20.0%
!!! ATTTTATAGACGATATCTAT+TGG - chr6_3:81037916-81037935 Msa0960850:five_prime_UTR 20.0%
!! TGACATGAAAATCTTATATA+TGG + chr6_3:81038341-81038360 None:intergenic 20.0%
!! AAAAAAAAATCAAACTTAGG+GGG + chr6_3:81038432-81038451 None:intergenic 20.0%
!! AATCTGTGAATAATATCTAA+TGG - chr6_3:81038772-81038791 Msa0960850:intron 20.0%
!! GATATAACATTACTATATAC+TGG + chr6_3:81038854-81038873 None:intergenic 20.0%
!! TACCATCAACATATATAAAA+GGG - chr6_3:81038913-81038932 Msa0960850:intron 20.0%
!!! TTATACATGATTTTACACAT+TGG - chr6_3:81039506-81039525 Msa0960850:intron 20.0%
!! AAAGCATAATAATCTAAACT+AGG + chr6_3:81041132-81041151 None:intergenic 20.0%
! GTTAGAAACTTACTATGTTT+AGG + chr6_3:81035084-81035103 None:intergenic 25.0%
! TAAAGGAATAACATTTCAGT+TGG + chr6_3:81035180-81035199 None:intergenic 25.0%
!! TGGTTTTCTCAAATTATTTG+CGG + chr6_3:81035276-81035295 None:intergenic 25.0%
! TTCAGTGTAATTATATGTGT+CGG - chr6_3:81035301-81035320 Msa0960850:CDS 25.0%
!!! TGTTATCACTCACTTTTATT+AGG - chr6_3:81035735-81035754 Msa0960850:intron 25.0%
!! GAGTTGTTCATTATTTTCTA+AGG - chr6_3:81035886-81035905 Msa0960850:intron 25.0%
!! ATCTTTAAGAATGAAGTTCA+AGG - chr6_3:81035917-81035936 Msa0960850:intron 25.0%
! AACTCACATTACATAACATT+TGG + chr6_3:81036418-81036437 None:intergenic 25.0%
!!! AGTTTTAAGAAGAAAGTTCA+GGG - chr6_3:81036470-81036489 Msa0960850:intron 25.0%
! TGATAAAATCTAACCTGATT+AGG + chr6_3:81036753-81036772 None:intergenic 25.0%
!!! GTAAAAAAGGAATTTTAAGG+GGG + chr6_3:81037007-81037026 None:intergenic 25.0%
!! GGTAAAAAAGGAATTTTAAG+GGG + chr6_3:81037008-81037027 None:intergenic 25.0%
!! GGGTAAAAAAGGAATTTTAA+GGG + chr6_3:81037009-81037028 None:intergenic 25.0%
!! CTTTTAGATGTATAGAATAG+GGG + chr6_3:81037029-81037048 None:intergenic 25.0%
!!! GTATGTTTTTAGATTTTACC+TGG - chr6_3:81037094-81037113 Msa0960850:five_prime_UTR 25.0%
! TTTAACGAAAAAATACTTCC+GGG + chr6_3:81037134-81037153 None:intergenic 25.0%
! CTTTAACGAAAAAATACTTC+CGG + chr6_3:81037135-81037154 None:intergenic 25.0%
! AGATATATACGGTATCTAAA+AGG - chr6_3:81037153-81037172 Msa0960850:five_prime_UTR 25.0%
!!! CACTTAATTTAATTTTGCTG+AGG + chr6_3:81037802-81037821 None:intergenic 25.0%
! TATATATCTTCAGAAGGATT+TGG + chr6_3:81038025-81038044 None:intergenic 25.0%
! TATAAAACATGGGGTAAAAT+GGG - chr6_3:81038052-81038071 Msa0960850:five_prime_UTR 25.0%
!! TGTGTAGTTTTTATAAAGCT+TGG - chr6_3:81038123-81038142 Msa0960850:intron 25.0%
!! GTGTAGTTTTTATAAAGCTT+GGG - chr6_3:81038124-81038143 Msa0960850:intron 25.0%
! TGAAAATCATTGAGAATTGA+TGG + chr6_3:81038623-81038642 None:intergenic 25.0%
!! ATCAATTCTCAATGATTTTC+AGG - chr6_3:81038622-81038641 Msa0960850:intron 25.0%
! AATTGATAAAAGACTACGAA+GGG + chr6_3:81038804-81038823 None:intergenic 25.0%
! AAATTGATAAAAGACTACGA+AGG + chr6_3:81038805-81038824 None:intergenic 25.0%
! GTACCATCAACATATATAAA+AGG - chr6_3:81038912-81038931 Msa0960850:intron 25.0%
! AAAGATATAATCGCAATCTA+TGG - chr6_3:81039641-81039660 Msa0960850:five_prime_UTR 25.0%
! AAGATATAATCGCAATCTAT+GGG - chr6_3:81039642-81039661 Msa0960850:five_prime_UTR 25.0%
!! ACAGACCTAATAAATTTTCT+CGG + chr6_3:81039973-81039992 None:intergenic 25.0%
! TTTATTAGGTCTGTATTACA+AGG - chr6_3:81039979-81039998 Msa0960850:five_prime_UTR 25.0%
!!! CTTTAACTTGAACTTGTAAA+TGG + chr6_3:81040015-81040034 None:intergenic 25.0%
!! CATTTACAAGTTCAAGTTAA+AGG - chr6_3:81040013-81040032 Msa0960850:five_prime_UTR 25.0%
! AAAAAATTTAAGCCATCTGT+AGG - chr6_3:81040577-81040596 Msa0960850:intron 25.0%
! ACTTGTCTTAAAATATCATC+AGG + chr6_3:81041081-81041100 None:intergenic 25.0%
ATGTTTCAATCTATGAAACG+CGG - chr6_3:81035217-81035236 Msa0960850:CDS 30.0%
ATAGGTTTCAATTCAATGTG+TGG - chr6_3:81035386-81035405 Msa0960850:CDS 30.0%
GGAAAATAAGCAAACAAGTA+AGG + chr6_3:81035449-81035468 None:intergenic 30.0%
!! TTTGCTTATTTTCCTCAATG+AGG - chr6_3:81035455-81035474 Msa0960850:CDS 30.0%
!! CGACAAAAAGTTATTTCTCT+TGG + chr6_3:81035517-81035536 None:intergenic 30.0%
TAACACAATTGTGACTTTAG+AGG - chr6_3:81035681-81035700 Msa0960850:intron 30.0%
AACACAATTGTGACTTTAGA+GGG - chr6_3:81035682-81035701 Msa0960850:intron 30.0%
GACATATAAGGATAAACATC+AGG + chr6_3:81035813-81035832 None:intergenic 30.0%
ACATTTCATCAACATTAGGA+TGG + chr6_3:81035866-81035885 None:intergenic 30.0%
ACTCACATTTCATCAACATT+AGG + chr6_3:81035870-81035889 None:intergenic 30.0%
CAAACTTAGGCAAATGTATT+GGG + chr6_3:81036155-81036174 None:intergenic 30.0%
TCAAACTTAGGCAAATGTAT+TGG + chr6_3:81036156-81036175 None:intergenic 30.0%
CACATTACATAACATTTGGA+TGG + chr6_3:81036414-81036433 None:intergenic 30.0%
CTTTCTTCTTAAAACTCTTC+AGG + chr6_3:81036466-81036485 None:intergenic 30.0%
!!! GAGTTTTAAGAAGAAAGTTC+AGG - chr6_3:81036469-81036488 Msa0960850:intron 30.0%
! GGGGTAAAAAAGGAATTTTA+AGG + chr6_3:81037010-81037029 None:intergenic 30.0%
GTATAGAATAGGGGTAAAAA+AGG + chr6_3:81037020-81037039 None:intergenic 30.0%
TGCTGAAGAAAAATGGAAAT+GGG - chr6_3:81037411-81037430 Msa0960850:five_prime_UTR 30.0%
TCCCACATTTGAAAAGTTAT+AGG - chr6_3:81037514-81037533 Msa0960850:five_prime_UTR 30.0%
! CCCTATAACTTTTCAAATGT+GGG + chr6_3:81037518-81037537 None:intergenic 30.0%
CCCACATTTGAAAAGTTATA+GGG - chr6_3:81037515-81037534 Msa0960850:five_prime_UTR 30.0%
! ACCCTATAACTTTTCAAATG+TGG + chr6_3:81037519-81037538 None:intergenic 30.0%
GCATTGCTACTATTTATTCT+TGG - chr6_3:81037188-81037207 Msa0960850:five_prime_UTR 30.0%
GTCTTTATTACCATTTCATC+AGG - chr6_3:81037827-81037846 Msa0960850:five_prime_UTR 30.0%
TTTATTACCATTTCATCAGG+TGG - chr6_3:81037830-81037849 Msa0960850:five_prime_UTR 30.0%
AAAATAACCACCTGATGAAA+TGG + chr6_3:81037840-81037859 None:intergenic 30.0%
GTGATAAATTCCTTCACATA+TGG - chr6_3:81037863-81037882 Msa0960850:five_prime_UTR 30.0%
! TATACCAGAGGTATAAAACA+TGG - chr6_3:81038041-81038060 Msa0960850:five_prime_UTR 30.0%
! ATACCAGAGGTATAAAACAT+GGG - chr6_3:81038042-81038061 Msa0960850:five_prime_UTR 30.0%
GTATAAAACATGGGGTAAAA+TGG - chr6_3:81038051-81038070 Msa0960850:five_prime_UTR 30.0%
TAACTCAAGCTTATAAAACC+GGG + chr6_3:81038167-81038186 None:intergenic 30.0%
CTAACTCAAGCTTATAAAAC+CGG + chr6_3:81038168-81038187 None:intergenic 30.0%
CAAACTTAGGGAAATGTATT+TGG + chr6_3:81038385-81038404 None:intergenic 30.0%
CATTTCCTTGATCAAACTTA+GGG + chr6_3:81038397-81038416 None:intergenic 30.0%
! TTTGATCAAGGAAATGGATT+TGG - chr6_3:81038401-81038420 Msa0960850:intron 30.0%
ACCATCAAACACTAATACTA+GGG + chr6_3:81038541-81038560 None:intergenic 30.0%
AACCATCAAACACTAATACT+AGG + chr6_3:81038542-81038561 None:intergenic 30.0%
AAATCATTGAGAATTGATGG+TGG + chr6_3:81038620-81038639 None:intergenic 30.0%
ACATTACTATATACTGGTGA+AGG + chr6_3:81038848-81038867 None:intergenic 30.0%
! TGCCCTTTTATATATGTTGA+TGG + chr6_3:81038918-81038937 None:intergenic 30.0%
GAATTTGATCACAAAACTAG+AGG + chr6_3:81038968-81038987 None:intergenic 30.0%
CAGTAAAAGTTTCAGTTTCA+AGG + chr6_3:81039053-81039072 None:intergenic 30.0%
! GAAACTTTTACTGAGTTTCA+TGG - chr6_3:81039060-81039079 Msa0960850:intron 30.0%
TTTACTGAGTTTCATGGAAA+CGG - chr6_3:81039066-81039085 Msa0960850:intron 30.0%
ATAAATTACCATCACTCTTG+TGG + chr6_3:81039128-81039147 None:intergenic 30.0%
CAAGAGTGATGGTAATTTAT+CGG - chr6_3:81039128-81039147 Msa0960850:intron 30.0%
! CATCATCACCGTTAAAATTT+TGG + chr6_3:81039188-81039207 None:intergenic 30.0%
!! CAAAATTTTAACGGTGATGA+TGG - chr6_3:81039186-81039205 Msa0960850:intron 30.0%
! AATGATTCCCTTTTACGTTT+GGG + chr6_3:81039303-81039322 None:intergenic 30.0%
! TAATGATTCCCTTTTACGTT+TGG + chr6_3:81039304-81039323 None:intergenic 30.0%
CATTATCAGGAATGATAAAC+TGG - chr6_3:81039319-81039338 Msa0960850:intron 30.0%
AGTAATAATATACGGGAAGT+TGG - chr6_3:81039741-81039760 Msa0960850:five_prime_UTR 30.0%
TAGAGCCGAGAAAATTTATT+AGG - chr6_3:81039965-81039984 Msa0960850:five_prime_UTR 30.0%
! TTACAAGTTCAAGTTAAAGG+AGG - chr6_3:81040016-81040035 Msa0960850:five_prime_UTR 30.0%
! TACAAGTTCAAGTTAAAGGA+GGG - chr6_3:81040017-81040036 Msa0960850:five_prime_UTR 30.0%
!! GTTCAAGTTGAACATGTTAA+CGG + chr6_3:81040134-81040153 None:intergenic 30.0%
TTAACATGTTCAACTTGAAC+CGG - chr6_3:81040134-81040153 Msa0960850:five_prime_UTR 30.0%
AAATCATGCAGTTCAAATTC+AGG + chr6_3:81040163-81040182 None:intergenic 30.0%
TTGTAAGTGTCTCAATTTGA+CGG + chr6_3:81040200-81040219 None:intergenic 30.0%
! CTTTTTATTCACAACTGCTT+TGG + chr6_3:81040557-81040576 None:intergenic 30.0%
AAGAAACTGAAGCTTGAATT+GGG - chr6_3:81040805-81040824 Msa0960850:intron 30.0%
GAAGTTAAGTTTGGATCATT+TGG - chr6_3:81040868-81040887 Msa0960850:five_prime_UTR 30.0%
GTTTATCATTCACTTGTTTG+TGG - chr6_3:81041099-81041118 Msa0960850:five_prime_UTR 30.0%
! TTCTGCTTGTGCTTCTATTT+TGG - chr6_3:81034812-81034831 Msa0960850:three_prime_UTR 35.0%
! TAATTGGGTTGTTGTGAATC+AGG - chr6_3:81034989-81035008 Msa0960850:CDS 35.0%
TCTCAAATTATTTGCGGAGT+CGG + chr6_3:81035270-81035289 None:intergenic 35.0%
! GTAATTATATGTGTCGGTGT+CGG - chr6_3:81035307-81035326 Msa0960850:CDS 35.0%
GAATTGAAACCTATGAAGCA+TGG + chr6_3:81035380-81035399 None:intergenic 35.0%
AATGCAATTCATCCTCATTG+AGG + chr6_3:81035470-81035489 None:intergenic 35.0%
CAATGAGGATGAATTGCATT+AGG - chr6_3:81035470-81035489 Msa0960850:CDS 35.0%
AAATGTGCATATGTTGCAGA+AGG - chr6_3:81035586-81035605 Msa0960850:intron 35.0%
! ACACAATTGTGACTTTAGAG+GGG - chr6_3:81035683-81035702 Msa0960850:intron 35.0%
! CTTTTATTAGGACTCATTGC+AGG - chr6_3:81035747-81035766 Msa0960850:intron 35.0%
TTCCATACAGCTTCTTGATA+TGG + chr6_3:81035774-81035793 None:intergenic 35.0%
TCCTTATATGTCTCCTTCTA+TGG - chr6_3:81035821-81035840 Msa0960850:intron 35.0%
CCTTATATGTCTCCTTCTAT+GGG - chr6_3:81035822-81035841 Msa0960850:intron 35.0%
CTTATATGTCTCCTTCTATG+GGG - chr6_3:81035823-81035842 Msa0960850:intron 35.0%
TTGTTAACAAACCCCATAGA+AGG + chr6_3:81035837-81035856 None:intergenic 35.0%
GGCATGCAATAATCAAACTT+AGG + chr6_3:81036168-81036187 None:intergenic 35.0%
! AGTTTAAGTGAGTTGACCTT+CGG - chr6_3:81036237-81036256 Msa0960850:intron 35.0%
AAATCTAACCTGATTAGGAC+AGG + chr6_3:81036748-81036767 None:intergenic 35.0%
AACCAAATGTCGCAATTAGA+CGG + chr6_3:81036857-81036876 None:intergenic 35.0%
! ATCCAACACAATGAAAGTGT+TGG + chr6_3:81036895-81036914 None:intergenic 35.0%
TTCATTGTGTTGGATGTGAA+TGG - chr6_3:81036900-81036919 Msa0960850:CDS 35.0%
AAAAACATACCCCAGAACAT+AGG + chr6_3:81037084-81037103 None:intergenic 35.0%
CATAGTCAGCAGTATATCAT+AGG + chr6_3:81037223-81037242 None:intergenic 35.0%
CTGACTATGCATTATACTGT+TGG - chr6_3:81037234-81037253 Msa0960850:five_prime_UTR 35.0%
GTGCTGAAGAAAAATGGAAA+TGG - chr6_3:81037410-81037429 Msa0960850:five_prime_UTR 35.0%
GATCATAGTACACTCAAAAC+TGG + chr6_3:81037449-81037468 None:intergenic 35.0%
TACTCGAGAAGGAATAAGTT+TGG + chr6_3:81037471-81037490 None:intergenic 35.0%
ATTATAGTCAGTACTCGAGA+AGG + chr6_3:81037482-81037501 None:intergenic 35.0%
GGGTTAATATTAGGAACAGT+AGG - chr6_3:81037535-81037554 Msa0960850:five_prime_UTR 35.0%
! TGGTTCTGCAGTTATCTAAA+AGG - chr6_3:81037683-81037702 Msa0960850:five_prime_UTR 35.0%
ATTCTTGGCATTCTTCTTCA+AGG - chr6_3:81037733-81037752 Msa0960850:five_prime_UTR 35.0%
!! TTCATCAGGTGGTTATTTTC+AGG - chr6_3:81037841-81037860 Msa0960850:five_prime_UTR 35.0%
AATGTCAACACCATATGTGA+AGG + chr6_3:81037876-81037895 None:intergenic 35.0%
CTCTGGTATATATCTTCAGA+AGG + chr6_3:81038031-81038050 None:intergenic 35.0%
! CTTCTGAAGATATATACCAG+AGG - chr6_3:81038029-81038048 Msa0960850:five_prime_UTR 35.0%
! TACCAGAGGTATAAAACATG+GGG - chr6_3:81038043-81038062 Msa0960850:five_prime_UTR 35.0%
! ATGGGGTAAAATGGGAATTT+TGG - chr6_3:81038060-81038079 Msa0960850:five_prime_UTR 35.0%
! TGGGGTAAAATGGGAATTTT+GGG - chr6_3:81038061-81038080 Msa0960850:five_prime_UTR 35.0%
!! CGGTTTTATAAGCTTGAGTT+AGG - chr6_3:81038166-81038185 Msa0960850:intron 35.0%
CATTTCCCTAAGTTTGATCA+AGG - chr6_3:81038389-81038408 Msa0960850:intron 35.0%
CCATTTCCTTGATCAAACTT+AGG + chr6_3:81038398-81038417 None:intergenic 35.0%
CCTAAGTTTGATCAAGGAAA+TGG - chr6_3:81038395-81038414 Msa0960850:intron 35.0%
! TTGACTTGACCTAATCGATT+TGG - chr6_3:81038464-81038483 Msa0960850:intron 35.0%
! TGACTTGACCTAATCGATTT+GGG - chr6_3:81038465-81038484 Msa0960850:intron 35.0%
!! CTAATCGATTTGGGCTTTAT+CGG - chr6_3:81038474-81038493 Msa0960850:intron 35.0%
! TTTATCGGACTGGACTAAAA+TGG - chr6_3:81038489-81038508 Msa0960850:intron 35.0%
! TTATCGGACTGGACTAAAAT+GGG - chr6_3:81038490-81038509 Msa0960850:intron 35.0%
GGGTAGTTAAAAACATCAGT+AGG + chr6_3:81038521-81038540 None:intergenic 35.0%
ACCCTAGTATTAGTGTTTGA+TGG - chr6_3:81038537-81038556 Msa0960850:intron 35.0%
AGTGACAACAAGGAAATGAA+GGG + chr6_3:81038701-81038720 None:intergenic 35.0%
ATGTATTAGTTACCAGCTAG+AGG - chr6_3:81038733-81038752 Msa0960850:intron 35.0%
ACATATATAAAAGGGCAAGC+TGG - chr6_3:81038921-81038940 Msa0960850:intron 35.0%
GAAGTAGAGTCAAAAGTTCA+TGG - chr6_3:81039005-81039024 Msa0960850:intron 35.0%
AAGCCAAAACAACAAATGTG+AGG - chr6_3:81039158-81039177 Msa0960850:intron 35.0%
AGCCAAAACAACAAATGTGA+GGG - chr6_3:81039159-81039178 Msa0960850:intron 35.0%
!!! GAGGGTGTCCAAAATTTTAA+CGG - chr6_3:81039177-81039196 Msa0960850:intron 35.0%
GACAATGAAAAATTCAGCAC+TGG - chr6_3:81039219-81039238 Msa0960850:intron 35.0%
TTCATTCTCCCAAACGTAAA+AGG - chr6_3:81039292-81039311 Msa0960850:intron 35.0%
TCATTCTCCCAAACGTAAAA+GGG - chr6_3:81039293-81039312 Msa0960850:intron 35.0%
CGTAAAAGGGAATCATTATC+AGG - chr6_3:81039306-81039325 Msa0960850:intron 35.0%
AATACATCCATTTGATCCTG+AGG - chr6_3:81039356-81039375 Msa0960850:intron 35.0%
TTATACTCCTCAGGATCAAA+TGG + chr6_3:81039366-81039385 None:intergenic 35.0%
! TTTGATCCTGAGGAGTATAA+AGG - chr6_3:81039366-81039385 Msa0960850:intron 35.0%
! ACTTTTTAGATCAGATGCTG+TGG - chr6_3:81039397-81039416 Msa0960850:intron 35.0%
! CTTTTTAGATCAGATGCTGT+GGG - chr6_3:81039398-81039417 Msa0960850:intron 35.0%
ATGTGAAAACATTCTCGTTC+AGG + chr6_3:81039552-81039571 None:intergenic 35.0%
! CGAGAATGTTTTCACATGAA+TGG - chr6_3:81039555-81039574 Msa0960850:intron 35.0%
! TAGAGCTTTAGTTTAGAGAG+CGG + chr6_3:81039794-81039813 None:intergenic 35.0%
! CTAAACTAAAGCTCTAACCT+AGG - chr6_3:81039798-81039817 Msa0960850:five_prime_UTR 35.0%
! TTAGTTATTGTGAAGTGCCT+AGG + chr6_3:81039818-81039837 None:intergenic 35.0%
ACAGCCTTTACAAACTCATA+AGG - chr6_3:81039878-81039897 Msa0960850:five_prime_UTR 35.0%
CTTGCCTTATGAGTTTGTAA+AGG + chr6_3:81039885-81039904 None:intergenic 35.0%
CTTTACAAACTCATAAGGCA+AGG - chr6_3:81039883-81039902 Msa0960850:five_prime_UTR 35.0%
AAGTTAAAGGAGGGATGATT+TGG - chr6_3:81040026-81040045 Msa0960850:five_prime_UTR 35.0%
!! ATAACAAATGGGTTGTGTTC+AGG - chr6_3:81040058-81040077 Msa0960850:five_prime_UTR 35.0%
TAACATGTTCAACTTGAACC+GGG - chr6_3:81040135-81040154 Msa0960850:five_prime_UTR 35.0%
!! TTCTGAAACTCCTTTACAGA+AGG - chr6_3:81040369-81040388 Msa0960850:intron 35.0%
ATCTTCTTCACCTTCTGTAA+AGG + chr6_3:81040382-81040401 None:intergenic 35.0%
TGAAATTGAGATGCAGTGAA+AGG - chr6_3:81040431-81040450 Msa0960850:intron 35.0%
TAAACTACACCAGTACATTG+CGG + chr6_3:81040625-81040644 None:intergenic 35.0%
!!! GTAGGTTTTGAATCATCAAC+AGG + chr6_3:81040685-81040704 None:intergenic 35.0%
!! ACAAGTTCTGTTTCTGTAGT+AGG + chr6_3:81040703-81040722 None:intergenic 35.0%
ACTACAGAAACAGAACTTGT+TGG - chr6_3:81040703-81040722 Msa0960850:intron 35.0%
! CTACAGAAACAGAACTTGTT+GGG - chr6_3:81040704-81040723 Msa0960850:intron 35.0%
GAAGAAACTGAAGCTTGAAT+TGG - chr6_3:81040804-81040823 Msa0960850:intron 35.0%
! CTTTGGGGATTTGACAAAAT+GGG - chr6_3:81040841-81040860 Msa0960850:intron 35.0%
! AAGTTTGGATCATTTGGTGA+TGG - chr6_3:81040874-81040893 Msa0960850:five_prime_UTR 35.0%
TTTGAGTAGACAAAACAGTG+TGG - chr6_3:81040970-81040989 Msa0960850:intron 35.0%
!! GTTGATGACTGATTGCAAAG+CGG - chr6_3:81035011-81035030 Msa0960850:CDS 40.0%
AAAGCGGAGATGATCAACAA+TGG - chr6_3:81035027-81035046 Msa0960850:CDS 40.0%
AATCTATGAAACGCGGATAC+CGG - chr6_3:81035224-81035243 Msa0960850:CDS 40.0%
GATTAGACGTGTTTCAGTGT+CGG + chr6_3:81035347-81035366 None:intergenic 40.0%
TATGAAGCATGGACACTTCT+CGG + chr6_3:81035369-81035388 None:intergenic 40.0%
! CACAATTGTGACTTTAGAGG+GGG - chr6_3:81035684-81035703 Msa0960850:intron 40.0%
GTCCATATCAAGAAGCTGTA+TGG - chr6_3:81035769-81035788 Msa0960850:intron 40.0%
AGCTGTATGGAAGATAAGAG+TGG - chr6_3:81035782-81035801 Msa0960850:intron 40.0%
CCCATAGAAGGAGACATATA+AGG + chr6_3:81035825-81035844 None:intergenic 40.0%
ACTAGTCATGTTCGTTTCCA+GGG + chr6_3:81035949-81035968 None:intergenic 40.0%
TACTAGTCATGTTCGTTTCC+AGG + chr6_3:81035950-81035969 None:intergenic 40.0%
! AAAGTCAGACATGGTTAGTC+AGG + chr6_3:81036189-81036208 None:intergenic 40.0%
! GTTTAAGTGAGTTGACCTTC+GGG - chr6_3:81036238-81036257 Msa0960850:intron 40.0%
! TTTAAGTGAGTTGACCTTCG+GGG - chr6_3:81036239-81036258 Msa0960850:intron 40.0%
AGTTGAACACATGACATTGC+AGG - chr6_3:81036357-81036376 Msa0960850:intron 40.0%
CAAGCGTAGGAGAATGTATT+GGG + chr6_3:81036714-81036733 None:intergenic 40.0%
TCAAGCGTAGGAGAATGTAT+TGG + chr6_3:81036715-81036734 None:intergenic 40.0%
!! CAACACAATGAAAGTGTTGG+AGG + chr6_3:81036892-81036911 None:intergenic 40.0%
CTCCAACACTTTCATTGTGT+TGG - chr6_3:81036890-81036909 Msa0960850:CDS 40.0%
ATTGTGTTGGATGTGAATGG+TGG - chr6_3:81036903-81036922 Msa0960850:CDS 40.0%
GGCATATCTCTAAGCAATGT+GGG + chr6_3:81036936-81036955 None:intergenic 40.0%
TGGCATATCTCTAAGCAATG+TGG + chr6_3:81036937-81036956 None:intergenic 40.0%
CGTAACGTTCAAACTACACA+TGG + chr6_3:81036957-81036976 None:intergenic 40.0%
TGAAACATTGCGCTTGGTTT+CGG - chr6_3:81037056-81037075 Msa0960850:five_prime_UTR 40.0%
TGTTGGCAATGATATACTGC+TGG - chr6_3:81037251-81037270 Msa0960850:five_prime_UTR 40.0%
! TTTGCGGTGCTGAAGAAAAA+TGG - chr6_3:81037404-81037423 Msa0960850:five_prime_UTR 40.0%
!! GTACACTCAAAACTGGTCTT+TGG + chr6_3:81037442-81037461 None:intergenic 40.0%
TTGGCATTCTTCTTCAAGGT+CGG - chr6_3:81037737-81037756 Msa0960850:five_prime_UTR 40.0%
! TTGCTGCTTGCTTAATGTGA+TGG - chr6_3:81037947-81037966 Msa0960850:five_prime_UTR 40.0%
ATATACAGCTCCCTTTGTTC+CGG + chr6_3:81037997-81038016 None:intergenic 40.0%
! TACCCCATGTTTTATACCTC+TGG + chr6_3:81038048-81038067 None:intergenic 40.0%
! GGGGTAAAATGGGAATTTTG+GGG - chr6_3:81038062-81038081 Msa0960850:five_prime_UTR 40.0%
! GGGTAAAATGGGAATTTTGG+GGG - chr6_3:81038063-81038082 Msa0960850:five_prime_UTR 40.0%
! GGTAAAATGGGAATTTTGGG+GGG - chr6_3:81038064-81038083 Msa0960850:five_prime_UTR 40.0%
GCTTATAAAACCGGGTTGTA+AGG + chr6_3:81038159-81038178 None:intergenic 40.0%
CGATAAAGCCCAAATCGATT+AGG + chr6_3:81038476-81038495 None:intergenic 40.0%
GTTAAAAACATCAGTAGGCC+AGG + chr6_3:81038516-81038535 None:intergenic 40.0%
!! TCATTGAGAATTGATGGTGG+TGG + chr6_3:81038617-81038636 None:intergenic 40.0%
TCATGGCAGTGTGAAAAGAT+AGG + chr6_3:81038676-81038695 None:intergenic 40.0%
CAAGGAAATGAAGGGTTTCA+TGG + chr6_3:81038693-81038712 None:intergenic 40.0%
CAGTGACAACAAGGAAATGA+AGG + chr6_3:81038702-81038721 None:intergenic 40.0%
! TCATTTCCTTGTTGTCACTG+CGG - chr6_3:81038702-81038721 Msa0960850:intron 40.0%
AAAAAACCGCAGTGACAACA+AGG + chr6_3:81038711-81038730 None:intergenic 40.0%
GTCAAAAGTTCATGGCAAAC+AGG - chr6_3:81039013-81039032 Msa0960850:intron 40.0%
TTCAGTTTCAAGGCGATCAA+GGG + chr6_3:81039043-81039062 None:intergenic 40.0%
TTTCAGTTTCAAGGCGATCA+AGG + chr6_3:81039044-81039063 None:intergenic 40.0%
TTGGTTAACCACAAGAGTGA+TGG - chr6_3:81039117-81039136 Msa0960850:intron 40.0%
!!! CACCCTCACATTTGTTGTTT+TGG + chr6_3:81039164-81039183 None:intergenic 40.0%
!! TAACGGTGATGATGGTAATG+AGG - chr6_3:81039194-81039213 Msa0960850:intron 40.0%
!! AAAATTCAGCACTGGTGTCA+AGG - chr6_3:81039227-81039246 Msa0960850:intron 40.0%
GCATCTGATCTAAAAAGTCC+TGG + chr6_3:81039395-81039414 None:intergenic 40.0%
! CAAGTTTGCTCTTGTAGTCA+TGG - chr6_3:81039853-81039872 Msa0960850:five_prime_UTR 40.0%
CAACATCACAGGATTAGGAT+AGG + chr6_3:81039923-81039942 None:intergenic 40.0%
ACACACAACATCACAGGATT+AGG + chr6_3:81039928-81039947 None:intergenic 40.0%
TATTGCACACACAACATCAC+AGG + chr6_3:81039934-81039953 None:intergenic 40.0%
AGGTCTGTATTACAAGGTCT+AGG - chr6_3:81039985-81040004 Msa0960850:five_prime_UTR 40.0%
TAATTAGGGCTACAAGGGTT+AGG + chr6_3:81040089-81040108 None:intergenic 40.0%
AGTGCTAATTAGGGCTACAA+GGG + chr6_3:81040094-81040113 None:intergenic 40.0%
GTCAACTGCAGTGCTAATTA+GGG + chr6_3:81040103-81040122 None:intergenic 40.0%
! GAACATGTTAACGGATAACC+AGG + chr6_3:81040125-81040144 None:intergenic 40.0%
CTGCATCTCAATTTCACTAC+TGG + chr6_3:81040427-81040446 None:intergenic 40.0%
AATTGAGATGCAGTGAAAGG+CGG - chr6_3:81040434-81040453 Msa0960850:intron 40.0%
TGCATTTCACTTTCTGTTGC+AGG - chr6_3:81040487-81040506 Msa0960850:intron 40.0%
GTTGCAGGAAATAAAGTGCA+CGG - chr6_3:81040502-81040521 Msa0960850:intron 40.0%
TGAAAACGATGACCTACAGA+TGG + chr6_3:81040592-81040611 None:intergenic 40.0%
!! TGTAGGTCATCGTTTTCAAG+TGG - chr6_3:81040594-81040613 Msa0960850:intron 40.0%
AAACTACACCAGTACATTGC+GGG + chr6_3:81040624-81040643 None:intergenic 40.0%
GAGAGTGACTCTAAATGCTT+AGG - chr6_3:81040646-81040665 Msa0960850:intron 40.0%
AATGCTTAGGCACACAAGTA+TGG - chr6_3:81040659-81040678 Msa0960850:intron 40.0%
GATGTCAAATTGCTGCAAAC+AGG - chr6_3:81040782-81040801 Msa0960850:intron 40.0%
! TGGGTTCTGCATTTTACCTT+TGG - chr6_3:81040824-81040843 Msa0960850:intron 40.0%
! GGGTTCTGCATTTTACCTTT+GGG - chr6_3:81040825-81040844 Msa0960850:intron 40.0%
! GGTTCTGCATTTTACCTTTG+GGG - chr6_3:81040826-81040845 Msa0960850:intron 40.0%
! CCATTTTGTCAAATCCCCAA+AGG + chr6_3:81040843-81040862 None:intergenic 40.0%
! CCTTTGGGGATTTGACAAAA+TGG - chr6_3:81040840-81040859 Msa0960850:intron 40.0%
!! ATTTGGTGATGGTTTCGAGA+GGG - chr6_3:81040885-81040904 Msa0960850:five_prime_UTR 40.0%
CAGTACCTCATACTGTGCAA+AGG - chr6_3:81034859-81034878 Msa0960850:three_prime_UTR 45.0%
TGCTACCTTTGCACAGTATG+AGG + chr6_3:81034867-81034886 None:intergenic 45.0%
CTTCGTCACTTCTCTTTCGT+TGG + chr6_3:81034906-81034925 None:intergenic 45.0%
!! GAGAAGTGTCCATGCTTCAT+AGG - chr6_3:81035368-81035387 Msa0960850:CDS 45.0%
TTTAGAGGGGGAACTGAAGT+GGG - chr6_3:81035696-81035715 Msa0960850:intron 45.0%
! TTAAGTGAGTTGACCTTCGG+GGG - chr6_3:81036240-81036259 Msa0960850:intron 45.0%
CAAGTACCTTTGTTAGCGCT+CGG + chr6_3:81036298-81036317 None:intergenic 45.0%
AAAACTCTTCAGGTGTCCCT+TGG + chr6_3:81036456-81036475 None:intergenic 45.0%
AAAGTTCAGGGTTCAAACCC+TGG - chr6_3:81036482-81036501 Msa0960850:CDS 45.0%
AGTAGTCATGTTCGTGTCCA+GGG + chr6_3:81036502-81036521 None:intergenic 45.0%
TAGTAGTCATGTTCGTGTCC+AGG + chr6_3:81036503-81036522 None:intergenic 45.0%
GGTATGCGATAATCAAGCGT+AGG + chr6_3:81036727-81036746 None:intergenic 45.0%
ATCGCATACCTGTCCTAATC+AGG - chr6_3:81036737-81036756 Msa0960850:CDS 45.0%
ATGTCGCAATTAGACGGCTA+GGG + chr6_3:81036851-81036870 None:intergenic 45.0%
AATGTCGCAATTAGACGGCT+AGG + chr6_3:81036852-81036871 None:intergenic 45.0%
AGCCGTCTAATTGCGACATT+TGG - chr6_3:81036852-81036871 Msa0960850:CDS 45.0%
!! AAGTGTTGGAGGTTGCAAGA+AGG + chr6_3:81036881-81036900 None:intergenic 45.0%
AAGCCCCCTCAATATCTCTT+AGG - chr6_3:81036981-81037000 Msa0960850:five_prime_UTR 45.0%
TACTCCTGAAACATTGCGCT+TGG - chr6_3:81037050-81037069 Msa0960850:five_prime_UTR 45.0%
GAAACCAAGCGCAATGTTTC+AGG + chr6_3:81037057-81037076 None:intergenic 45.0%
GAAACATTGCGCTTGGTTTC+GGG - chr6_3:81037057-81037076 Msa0960850:five_prime_UTR 45.0%
CTGGTTATGTAGTCATCTCC+CGG - chr6_3:81037113-81037132 Msa0960850:five_prime_UTR 45.0%
AGTAGCAATGCTCTTCTACG+TGG + chr6_3:81037179-81037198 None:intergenic 45.0%
AGGTGTCTGTATCTGCTTGA+TGG - chr6_3:81037555-81037574 Msa0960850:five_prime_UTR 45.0%
AGTAGCAATGCTCTTCTACG+TGG + chr6_3:81037179-81037198 None:intergenic 45.0%
! ATGTGATGGAAACACACCTC+CGG - chr6_3:81037961-81037980 Msa0960850:five_prime_UTR 45.0%
GAGTTATCTCCCGGAACAAA+GGG - chr6_3:81037984-81038003 Msa0960850:five_prime_UTR 45.0%
TATACAGCTCCCTTTGTTCC+GGG + chr6_3:81037996-81038015 None:intergenic 45.0%
!! TTGAGAATTGATGGTGGTGG+AGG + chr6_3:81038614-81038633 None:intergenic 45.0%
TAGTTACCAGCTAGAGGTCT+TGG - chr6_3:81038739-81038758 Msa0960850:intron 45.0%
AAACGGCAATTGTCTTGTCG+AGG - chr6_3:81039083-81039102 Msa0960850:intron 45.0%
!! TGTCGAGGATCGTGTTGATT+TGG - chr6_3:81039098-81039117 Msa0960850:intron 45.0%
AGAAGTTTCCACAGAAGAGG+TGG + chr6_3:81039262-81039281 None:intergenic 45.0%
CTCAGAAGTTTCCACAGAAG+AGG + chr6_3:81039265-81039284 None:intergenic 45.0%
! GATCCTGAGGAGTATAAAGG+TGG - chr6_3:81039369-81039388 Msa0960850:intron 45.0%
AAGAATGCAGAACCAGACAG+TGG - chr6_3:81039444-81039463 Msa0960850:intron 45.0%
AGAATGCAGAACCAGACAGT+GGG - chr6_3:81039445-81039464 Msa0960850:intron 45.0%
! CAGCTAGCAAGCTGAGATTT+TGG + chr6_3:81039697-81039716 None:intergenic 45.0%
TACGGGAAGTTGGATAGCTT+TGG - chr6_3:81039751-81039770 Msa0960850:five_prime_UTR 45.0%
!! GAGCGGTCATTTTGTAGACT+GGG + chr6_3:81039777-81039796 None:intergenic 45.0%
!! AGAGCGGTCATTTTGTAGAC+TGG + chr6_3:81039778-81039797 None:intergenic 45.0%
CAGTGCTAATTAGGGCTACA+AGG + chr6_3:81040095-81040114 None:intergenic 45.0%
GGTCAACTGCAGTGCTAATT+AGG + chr6_3:81040104-81040123 None:intergenic 45.0%
AATTAGCACTGCAGTTGACC+TGG - chr6_3:81040104-81040123 Msa0960850:five_prime_UTR 45.0%
! GCAGTTCAAATTCAGGTTCC+CGG + chr6_3:81040156-81040175 None:intergenic 45.0%
CACTACTGGATCCTCATACA+TGG + chr6_3:81040413-81040432 None:intergenic 45.0%
!! AAGAACAGCGCGGTTTTGTA+GGG + chr6_3:81040465-81040484 None:intergenic 45.0%
ATGGGCGAGGAAGTTAAGTT+TGG - chr6_3:81040859-81040878 Msa0960850:intron 45.0%
!! CATTTGGTGATGGTTTCGAG+AGG - chr6_3:81040884-81040903 Msa0960850:five_prime_UTR 45.0%
AGCTATCAAGCATCCATCTG+TGG - chr6_3:81040909-81040928 Msa0960850:five_prime_UTR 45.0%
GCATCCATCTGTGGATTTCA+TGG - chr6_3:81040918-81040937 Msa0960850:five_prime_UTR 45.0%
CACTCCATGAAATCCACAGA+TGG + chr6_3:81040925-81040944 None:intergenic 45.0%
CTACGAGTTCTTCCTCAGAA+TGG + chr6_3:81041000-81041019 None:intergenic 45.0%
ATCAATTCCGGTGTCTGTGC+CGG + chr6_3:81035246-81035265 None:intergenic 50.0%
TGCGGAGTCGGTATCAATTC+CGG + chr6_3:81035258-81035277 None:intergenic 50.0%
! CTTTAGAGGGGGAACTGAAG+TGG - chr6_3:81035695-81035714 Msa0960850:intron 50.0%
GAAGTTCAAGGTTCAAGCCC+TGG - chr6_3:81035929-81035948 Msa0960850:intron 50.0%
TTGCAGATCACCCTCCAAAG+AGG - chr6_3:81036315-81036334 Msa0960850:intron 50.0%
TCGGAATTCCGCTTTCATCG+CGG - chr6_3:81036820-81036839 Msa0960850:CDS 50.0%
TGTCGCAATTAGACGGCTAG+GGG + chr6_3:81036850-81036869 None:intergenic 50.0%
GGGCCTAAGAGATATTGAGG+GGG + chr6_3:81036987-81037006 None:intergenic 50.0%
GGGGCCTAAGAGATATTGAG+GGG + chr6_3:81036988-81037007 None:intergenic 50.0%
GGGGGCCTAAGAGATATTGA+GGG + chr6_3:81036989-81037008 None:intergenic 50.0%
AGGGGGCCTAAGAGATATTG+AGG + chr6_3:81036990-81037009 None:intergenic 50.0%
TGGTTTCGGGACCTATGTTC+TGG - chr6_3:81037070-81037089 Msa0960850:five_prime_UTR 50.0%
GGTTTCGGGACCTATGTTCT+GGG - chr6_3:81037071-81037090 Msa0960850:five_prime_UTR 50.0%
GTTTCGGGACCTATGTTCTG+GGG - chr6_3:81037072-81037091 Msa0960850:five_prime_UTR 50.0%
CGGGAGATGACTACATAACC+AGG + chr6_3:81037115-81037134 None:intergenic 50.0%
! TGTGATGGAAACACACCTCC+GGG - chr6_3:81037962-81037981 Msa0960850:five_prime_UTR 50.0%
TTGTTCCGGGAGATAACTCC+CGG + chr6_3:81037983-81038002 None:intergenic 50.0%
GGAGTTATCTCCCGGAACAA+AGG - chr6_3:81037983-81038002 Msa0960850:five_prime_UTR 50.0%
TTTGGGGGGCCTAAGAGATA+TGG - chr6_3:81038078-81038097 Msa0960850:intron 50.0%
AAGCCCCCTCCATATCTCTT+AGG + chr6_3:81038090-81038109 None:intergenic 50.0%
GAAGCTCTCACCTTACAACC+CGG - chr6_3:81038146-81038165 Msa0960850:intron 50.0%
! CGATTTGGGCTTTATCGGAC+TGG - chr6_3:81038479-81038498 Msa0960850:intron 50.0%
!! AGAATTGATGGTGGTGGAGG+TGG + chr6_3:81038611-81038630 None:intergenic 50.0%
TGGCCACCTTTATACTCCTC+AGG + chr6_3:81039375-81039394 None:intergenic 50.0%
! TGAGGAGTATAAAGGTGGCC+AGG - chr6_3:81039374-81039393 Msa0960850:intron 50.0%
GTGGGCAAGAGATGTTCTGT+CGG - chr6_3:81039416-81039435 Msa0960850:intron 50.0%
TTCGATGATGACCCACTGTC+TGG + chr6_3:81039459-81039478 None:intergenic 50.0%
AGACAGTGGGTCATCATCGA+AGG - chr6_3:81039458-81039477 Msa0960850:intron 50.0%
GATGCATCCTGCCATGTATG+AGG - chr6_3:81040399-81040418 Msa0960850:intron 50.0%
ACTGGATCCTCATACATGGC+AGG + chr6_3:81040409-81040428 None:intergenic 50.0%
!! CAAGAACAGCGCGGTTTTGT+AGG + chr6_3:81040466-81040485 None:intergenic 50.0%
GAAATGCAGCAAGAACAGCG+CGG + chr6_3:81040475-81040494 None:intergenic 50.0%
CTTGTTGGGAGAGAAAGACG+AGG - chr6_3:81040718-81040737 Msa0960850:intron 50.0%
GAGTGTAGCTGCAACGTTCA+AGG - chr6_3:81040742-81040761 Msa0960850:intron 50.0%
GGGATTTGACAAAATGGGCG+AGG - chr6_3:81040846-81040865 Msa0960850:intron 50.0%
CAGTGTGGTAAGCCATTCTG+AGG - chr6_3:81040985-81041004 Msa0960850:intron 50.0%
AGCGTGAGGACCTCTTTGGA+GGG + chr6_3:81036328-81036347 None:intergenic 55.0%
CGGAATTCCGCTTTCATCGC+GGG - chr6_3:81036821-81036840 Msa0960850:CDS 55.0%
GGGGGCCTAAGAGATATGGA+GGG - chr6_3:81038082-81038101 Msa0960850:intron 55.0%
GGGGCCTAAGAGATATGGAG+GGG - chr6_3:81038083-81038102 Msa0960850:intron 55.0%
GGGCCTAAGAGATATGGAGG+GGG - chr6_3:81038084-81038103 Msa0960850:intron 55.0%
GGACTGGACTAAAATGGGCC+TGG - chr6_3:81038495-81038514 Msa0960850:intron 55.0%
! GTGGTGGAGGTGGTACTAAC+TGG + chr6_3:81038601-81038620 None:intergenic 55.0%
CGATCTAGCCACCTCTTCTG+TGG - chr6_3:81039251-81039270 Msa0960850:intron 55.0%
GTGGAACTCCCGCAATGTAC+TGG - chr6_3:81040613-81040632 Msa0960850:intron 55.0%
TTGACCTTCGGGGGTTCACC+AGG - chr6_3:81036249-81036268 Msa0960850:intron 60.0%
TGACCTTCGGGGGTTCACCA+GGG - chr6_3:81036250-81036269 Msa0960850:intron 60.0%
TTAGCGCTCGGCAAGCCTTG+CGG + chr6_3:81036286-81036305 None:intergenic 60.0%
GGCTTGCCGAGCGCTAACAA+AGG - chr6_3:81036289-81036308 Msa0960850:intron 60.0%
CAGCGTGAGGACCTCTTTGG+AGG + chr6_3:81036329-81036348 None:intergenic 60.0%
CTCCAAAGAGGTCCTCACGC+TGG - chr6_3:81036327-81036346 Msa0960850:intron 60.0%
TGCCAGCGTGAGGACCTCTT+TGG + chr6_3:81036332-81036351 None:intergenic 60.0%
AGAGGTCCTCACGCTGGCAA+TGG - chr6_3:81036333-81036352 Msa0960850:intron 60.0%
GAGGTCCTCACGCTGGCAAT+GGG - chr6_3:81036334-81036353 Msa0960850:intron 60.0%
CAACTCCCATTGCCAGCGTG+AGG + chr6_3:81036342-81036361 None:intergenic 60.0%
CGCAATTAGACGGCTAGGGG+CGG + chr6_3:81036847-81036866 None:intergenic 60.0%
CACCTCCGGGAGTTATCTCC+CGG - chr6_3:81037975-81037994 Msa0960850:five_prime_UTR 60.0%
TTCCGGGAGATAACTCCCGG+AGG + chr6_3:81037980-81037999 None:intergenic 60.0%
GGGGGGCCTAAGAGATATGG+AGG - chr6_3:81038081-81038100 Msa0960850:intron 60.0%
!! CAGCGCGGTTTTGTAGGGAC+AGG + chr6_3:81040460-81040479 None:intergenic 60.0%
GCGGATACCGGCACAGACAC+CGG - chr6_3:81035236-81035255 Msa0960850:CDS 65.0%
TGACCCTGGTGAACCCCCGA+AGG + chr6_3:81036256-81036275 None:intergenic 65.0%
TTCGGGGGTTCACCAGGGTC+AGG - chr6_3:81036255-81036274 Msa0960850:intron 65.0%
TCGGGGGTTCACCAGGGTCA+GGG - chr6_3:81036256-81036275 Msa0960850:intron 65.0%
GGGTTCACCAGGGTCAGGGT+AGG - chr6_3:81036260-81036279 Msa0960850:intron 65.0%
CTTGCGGCCTACCCTGACCC+TGG + chr6_3:81036270-81036289 None:intergenic 70.0%
CAGGGTCAGGGTAGGCCGCA+AGG - chr6_3:81036268-81036287 Msa0960850:intron 70.0%
GGGGCGGCCCGCGATGAAAG+CGG + chr6_3:81036831-81036850 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 81034766 81041186 81034766 ID=Msa0960850;Name=Msa0960850
chr6_3 mRNA 81034766 81041186 81034766 ID=Msa0960850-mRNA-1;Parent=Msa0960850;Name=Msa0960850-mRNA-1;_AED=0.14;_eAED=0.14;_QI=2039|1|1|1|0.6|0.5|6|208|355
chr6_3 exon 81034766 81035585 81034766 ID=Msa0960850-mRNA-1:exon:14548;Parent=Msa0960850-mRNA-1
chr6_3 exon 81036473 81038089 81036473 ID=Msa0960850-mRNA-1:exon:14547;Parent=Msa0960850-mRNA-1
chr6_3 exon 81038198 81038258 81038198 ID=Msa0960850-mRNA-1:exon:14546;Parent=Msa0960850-mRNA-1
chr6_3 exon 81039574 81040195 81039574 ID=Msa0960850-mRNA-1:exon:14545;Parent=Msa0960850-mRNA-1
chr6_3 exon 81040862 81040941 81040862 ID=Msa0960850-mRNA-1:exon:14544;Parent=Msa0960850-mRNA-1
chr6_3 exon 81041072 81041186 81041072 ID=Msa0960850-mRNA-1:exon:14543;Parent=Msa0960850-mRNA-1
chr6_3 five_prime_UTR 81041072 81041186 81041072 ID=Msa0960850-mRNA-1:five_prime_utr;Parent=Msa0960850-mRNA-1
chr6_3 five_prime_UTR 81040862 81040941 81040862 ID=Msa0960850-mRNA-1:five_prime_utr;Parent=Msa0960850-mRNA-1
chr6_3 five_prime_UTR 81039574 81040195 81039574 ID=Msa0960850-mRNA-1:five_prime_utr;Parent=Msa0960850-mRNA-1
chr6_3 five_prime_UTR 81038198 81038258 81038198 ID=Msa0960850-mRNA-1:five_prime_utr;Parent=Msa0960850-mRNA-1
chr6_3 five_prime_UTR 81036929 81038089 81036929 ID=Msa0960850-mRNA-1:five_prime_utr;Parent=Msa0960850-mRNA-1
chr6_3 CDS 81036473 81036928 81036473 ID=Msa0960850-mRNA-1:cds;Parent=Msa0960850-mRNA-1
chr6_3 CDS 81034974 81035585 81034974 ID=Msa0960850-mRNA-1:cds;Parent=Msa0960850-mRNA-1
chr6_3 three_prime_UTR 81034766 81034973 81034766 ID=Msa0960850-mRNA-1:three_prime_utr;Parent=Msa0960850-mRNA-1
Gene Sequence

>Msa0960850

ATGGCAAACAGGTCTTCCCTTGATCGCCTTGAAACTGAAACTTTTACTGAGTTTCATGGAAACGGCAATTGTCTTGTCGAGGATCGTGTTGATTTGGTTAACCACAAGAGTGATGGTAATTTATCGGACGCTAAAAGCCAAAACAACAAATGTGAGGGTGTCCAAAATTTTAACGGTGATGATGGTAATGAGGATGACAATGAAAAATTCAGCACTGGTGTCAAGGACGATCTAGCCACCTCTTCTGTGGAAACTTCTGAGAATGAATTTCATTCTCCCAAACGTAAAAGGGAATCATTATCAGGAATGATAAACTGGACGAAGAATATCGCAATACATCCATTTGATCCTGAGGAGTATAAAGGTGGCCAGGACTTTTTAGATCAGATGCTGTGGGCAAGAGATGTTCTGTCGGTCAGAAAGAATGCAGAACCAGACAGTGGGTCATCATCGAAGAATTCTGAAACTCCTTTACAGAAGGTGAAGAAGATGCATCCTGCCATGTATGAGGATCCAGTAGTGAAATTGAGATGCAGTGAAAGGCGGCCTGTCCCTACAAAACCGCGCTGTTCTTGCTGCATTTCACTTTCTGTTGCAGGAAATAAAGTGCACGGTTTCGTGACTGAAAACAAAAAATCAACTGCCAAAGCAGTTGTGAATAAAAAGAAAAAATTTAAGCCATCTGTAGGTCATCGTTTTCAAGTGGAACTCCCGCAATGTACTGGTGTAGTTTATGAGAGTGACTCTAAATGCTTAGGCACACAAGTATGGCCTGTTGATGATTCAAAACCTACTACAGAAACAGAACTTGTTGGGAGAGAAAGACGAGGAGAGTGTAGCTGCAACGTTCAAGGTTCTGTTGACTGTGTAAGATGTCAAATTGCTGCAAACAGGAAGAAACTGAAGCTTGAATTGGGTTCTGCATTTTACCTTTGGGGATTTGACAAAATGGGCGAGGAAGTTAAGTTTGGATCATTTGGTGATGGTTTCGAGAGGGAAGCTATCAAGCATCCATCTGTGGATTTCATGGAGTGTTTAGAGAACACGCAATGCTTTGATTTTGAGTAG
Protein sequence

>Msa0960850

MANRSSLDRLETETFTEFHGNGNCLVEDRVDLVNHKSDGNLSDAKSQNNKCEGVQNFNGDDGNEDDNEKFSTGVKDDLATSSVETSENEFHSPKRKRESLSGMINWTKNIAIHPFDPEEYKGGQDFLDQMLWARDVLSVRKNAEPDSGSSSKNSETPLQKVKKMHPAMYEDPVVKLRCSERRPVPTKPRCSCCISLSVAGNKVHGFVTENKKSTAKAVVNKKKKFKPSVGHRFQVELPQCTGVVYESDSKCLGTQVWPVDDSKPTTETELVGRERRGECSCNVQGSVDCVRCQIAANRKKLKLELGSAFYLWGFDKMGEEVKFGSFGDGFEREAIKHPSVDFMECLENTQCFDFE*