Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0923470 | XP_004512799.1 | 56.790 | 81 | 12 | 1 | 5 | 62 | 56 | 136 | 2.60e-16 | 83.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0923460 | Msa0923470 | 0.834013 | 3.831615e-56 | -8.615850e-47 |
| Msa0923470 | Msa0997120 | 0.823754 | 1.168367e-53 | -8.615850e-47 |
| Msa0923470 | Msa0997130 | 0.912646 | 1.533792e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0923470 | MtrunA17_Chr6g0482501 | 55.556 | 81 | 13 | 1 | 5 | 62 | 58 | 138 | 1.38e-19 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 9 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTTACAAGCTCTGGTTAA+AGG | 0.245540 | 6_2:+63939258 | None:intergenic |
| TGAAGGCATAGAAATTAAAA+AGG | 0.323462 | 6_2:-63940128 | Msa0923470:CDS |
| CTTTGAAAAGTTACAAGCTC+TGG | 0.380448 | 6_2:+63939251 | None:intergenic |
| GTTAAAGGGCTCTTGTAGTC+TGG | 0.397204 | 6_2:+63939273 | None:intergenic |
| AGTTACAAGCTCTGGTTAAA+GGG | 0.430469 | 6_2:+63939259 | None:intergenic |
| AGTATATACTTTATCTGCGC+TGG | 0.457171 | 6_2:+63940154 | None:intergenic |
| GAAGAGCTTATGTATGAAGC+TGG | 0.512051 | 6_2:-63940089 | Msa0923470:CDS |
| ATAAAGTATATACTTTCTGA+AGG | 0.598700 | 6_2:-63940145 | Msa0923470:CDS |
| GCTGGATTTGAAGATCACCT+TGG | 0.629238 | 6_2:-63940071 | Msa0923470:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTGTTTGTTTT+CGG | - | chr6_2:63939927-63939946 | Msa0923470:intron | 10.0% |
| !!! | TTTTTTTTTTTGTTTGTTTT+CGG | - | chr6_2:63939927-63939946 | Msa0923470:intron | 10.0% |
| !! | TTATATGATATTTAAATTCC+AGG | - | chr6_2:63940150-63940169 | Msa0923470:CDS | 15.0% |
| !! | AACAAAAATAAATATATCTG+AGG | + | chr6_2:63940781-63940800 | None:intergenic | 15.0% |
| !! | TTAATTTAATTATATTCCAG+AGG | - | chr6_2:63940854-63940873 | Msa0923470:CDS | 15.0% |
| !! | TTATATGATATTTAAATTCC+AGG | - | chr6_2:63940150-63940169 | Msa0923470:CDS | 15.0% |
| !! | AACAAAAATAAATATATCTG+AGG | + | chr6_2:63940781-63940800 | None:intergenic | 15.0% |
| !! | TTAATTTAATTATATTCCAG+AGG | - | chr6_2:63940854-63940873 | Msa0923470:CDS | 15.0% |
| !! | TTATCATCCATAATTCATTT+CGG | + | chr6_2:63939376-63939395 | None:intergenic | 20.0% |
| !!! | TAAAGATACTATCCATTTTA+AGG | - | chr6_2:63939393-63939412 | Msa0923470:intron | 20.0% |
| !! | ATCAAAATACAACCTTAAAA+TGG | + | chr6_2:63939408-63939427 | None:intergenic | 20.0% |
| !! | AAAAAACACTATATTCAAAG+CGG | + | chr6_2:63939723-63939742 | None:intergenic | 20.0% |
| !!! | ATTTTGTATAGATTAAGGAA+GGG | - | chr6_2:63939897-63939916 | Msa0923470:intron | 20.0% |
| !! | ATAAAGTATATACTTTCTGA+AGG | - | chr6_2:63940005-63940024 | Msa0923470:intron | 20.0% |
| !!! | AGGTAACATTTTTTGATTTA+AGG | - | chr6_2:63940201-63940220 | Msa0923470:intron | 20.0% |
| !!! | GGTAACATTTTTTGATTTAA+GGG | - | chr6_2:63940202-63940221 | Msa0923470:intron | 20.0% |
| !!! | ATTGTATTTTCTGTATTTGA+CGG | - | chr6_2:63940239-63940258 | Msa0923470:intron | 20.0% |
| !! | CAATGTGATACTATTTATTA+CGG | - | chr6_2:63940441-63940460 | Msa0923470:intron | 20.0% |
| !!! | TTACGGCAATTTTTTTTTTT+TGG | - | chr6_2:63940458-63940477 | Msa0923470:intron | 20.0% |
| !! | ATTCAAGATTATTACTGTAA+TGG | - | chr6_2:63940504-63940523 | Msa0923470:intron | 20.0% |
| !!! | TTTTTTTAACTGCTTTTCTT+TGG | - | chr6_2:63940750-63940769 | Msa0923470:intron | 20.0% |
| !!! | TTTTTTAACTGCTTTTCTTT+GGG | - | chr6_2:63940751-63940770 | Msa0923470:intron | 20.0% |
| !! | TTATCATCCATAATTCATTT+CGG | + | chr6_2:63939376-63939395 | None:intergenic | 20.0% |
| !!! | TAAAGATACTATCCATTTTA+AGG | - | chr6_2:63939393-63939412 | Msa0923470:intron | 20.0% |
| !! | ATCAAAATACAACCTTAAAA+TGG | + | chr6_2:63939408-63939427 | None:intergenic | 20.0% |
| !! | AAAAAACACTATATTCAAAG+CGG | + | chr6_2:63939723-63939742 | None:intergenic | 20.0% |
| !!! | ATTTTGTATAGATTAAGGAA+GGG | - | chr6_2:63939897-63939916 | Msa0923470:intron | 20.0% |
| !! | ATAAAGTATATACTTTCTGA+AGG | - | chr6_2:63940005-63940024 | Msa0923470:intron | 20.0% |
| !!! | AGGTAACATTTTTTGATTTA+AGG | - | chr6_2:63940201-63940220 | Msa0923470:intron | 20.0% |
| !!! | GGTAACATTTTTTGATTTAA+GGG | - | chr6_2:63940202-63940221 | Msa0923470:intron | 20.0% |
| !!! | ATTGTATTTTCTGTATTTGA+CGG | - | chr6_2:63940239-63940258 | Msa0923470:intron | 20.0% |
| !! | CAATGTGATACTATTTATTA+CGG | - | chr6_2:63940441-63940460 | Msa0923470:intron | 20.0% |
| !!! | TTACGGCAATTTTTTTTTTT+TGG | - | chr6_2:63940458-63940477 | Msa0923470:intron | 20.0% |
| !! | ATTCAAGATTATTACTGTAA+TGG | - | chr6_2:63940504-63940523 | Msa0923470:intron | 20.0% |
| !!! | TTTTTTTAACTGCTTTTCTT+TGG | - | chr6_2:63940750-63940769 | Msa0923470:intron | 20.0% |
| !!! | TTTTTTAACTGCTTTTCTTT+GGG | - | chr6_2:63940751-63940770 | Msa0923470:intron | 20.0% |
| ! | TATCATCCATAATTCATTTC+GGG | + | chr6_2:63939375-63939394 | None:intergenic | 25.0% |
| !!! | TTATTTTAACCTATGAAGCA+CGG | + | chr6_2:63939546-63939565 | None:intergenic | 25.0% |
| ! | ATGGACAATTTGTGAAATAT+GGG | - | chr6_2:63939668-63939687 | Msa0923470:intron | 25.0% |
| !!! | GCTTTGAATATAGTGTTTTT+TGG | - | chr6_2:63939722-63939741 | Msa0923470:intron | 25.0% |
| ! | GATATTGTTTAGTGTATGTT+TGG | - | chr6_2:63939760-63939779 | Msa0923470:intron | 25.0% |
| ! | CCTTAATCTATACAAAATCA+CGG | + | chr6_2:63939895-63939914 | None:intergenic | 25.0% |
| !! | GATTTTGTATAGATTAAGGA+AGG | - | chr6_2:63939896-63939915 | Msa0923470:intron | 25.0% |
| !!! | TTTGTTTGTTTTCGGAATAA+CGG | - | chr6_2:63939935-63939954 | Msa0923470:intron | 25.0% |
| !! | TGAAGGCATAGAAATTAAAA+AGG | - | chr6_2:63940022-63940041 | Msa0923470:intron | 25.0% |
| ! | ATTAAAGAAATTAATCAGCC+TGG | + | chr6_2:63940171-63940190 | None:intergenic | 25.0% |
| ! | AATCAAAAAATGTTACCTCA+GGG | + | chr6_2:63940199-63940218 | None:intergenic | 25.0% |
| ! | AAATCAAAAAATGTTACCTC+AGG | + | chr6_2:63940200-63940219 | None:intergenic | 25.0% |
| !! | TAGTATCACATTGATTATGT+AGG | + | chr6_2:63940434-63940453 | None:intergenic | 25.0% |
| ! | TACGAGATTTAGTAGAAAAT+TGG | - | chr6_2:63940629-63940648 | Msa0923470:intron | 25.0% |
| ! | TATCATCCATAATTCATTTC+GGG | + | chr6_2:63939375-63939394 | None:intergenic | 25.0% |
| !!! | TTATTTTAACCTATGAAGCA+CGG | + | chr6_2:63939546-63939565 | None:intergenic | 25.0% |
| ! | ATGGACAATTTGTGAAATAT+GGG | - | chr6_2:63939668-63939687 | Msa0923470:intron | 25.0% |
| !!! | GCTTTGAATATAGTGTTTTT+TGG | - | chr6_2:63939722-63939741 | Msa0923470:intron | 25.0% |
| ! | GATATTGTTTAGTGTATGTT+TGG | - | chr6_2:63939760-63939779 | Msa0923470:intron | 25.0% |
| ! | CCTTAATCTATACAAAATCA+CGG | + | chr6_2:63939895-63939914 | None:intergenic | 25.0% |
| !! | GATTTTGTATAGATTAAGGA+AGG | - | chr6_2:63939896-63939915 | Msa0923470:intron | 25.0% |
| !!! | TTTGTTTGTTTTCGGAATAA+CGG | - | chr6_2:63939935-63939954 | Msa0923470:intron | 25.0% |
| !! | TGAAGGCATAGAAATTAAAA+AGG | - | chr6_2:63940022-63940041 | Msa0923470:intron | 25.0% |
| ! | ATTAAAGAAATTAATCAGCC+TGG | + | chr6_2:63940171-63940190 | None:intergenic | 25.0% |
| ! | AATCAAAAAATGTTACCTCA+GGG | + | chr6_2:63940199-63940218 | None:intergenic | 25.0% |
| ! | AAATCAAAAAATGTTACCTC+AGG | + | chr6_2:63940200-63940219 | None:intergenic | 25.0% |
| !! | TAGTATCACATTGATTATGT+AGG | + | chr6_2:63940434-63940453 | None:intergenic | 25.0% |
| ! | TACGAGATTTAGTAGAAAAT+TGG | - | chr6_2:63940629-63940648 | Msa0923470:intron | 25.0% |
| !!! | ATGTATTTTTTGTGTACGAC+AGG | - | chr6_2:63939248-63939267 | Msa0923470:CDS | 30.0% |
| TTATTCCCCGAAATGAATTA+TGG | - | chr6_2:63939366-63939385 | Msa0923470:intron | 30.0% | |
| ATCATCCATAATTCATTTCG+GGG | + | chr6_2:63939374-63939393 | None:intergenic | 30.0% | |
| ! | ATGTGTCGGTATTATATACA+CGG | + | chr6_2:63939464-63939483 | None:intergenic | 30.0% |
| TTCAATATAACCACATGTGT+CGG | + | chr6_2:63939478-63939497 | None:intergenic | 30.0% | |
| ! | GTCTAAAGTTTACTTGCATA+TGG | + | chr6_2:63939599-63939618 | None:intergenic | 30.0% |
| AGACTTAGTGTTGTCAAATA+TGG | - | chr6_2:63939615-63939634 | Msa0923470:intron | 30.0% | |
| TTGTCAAATATGGAGTGTAT+TGG | - | chr6_2:63939625-63939644 | Msa0923470:intron | 30.0% | |
| CATATTTCACAAATTGTCCA+TGG | + | chr6_2:63939669-63939688 | None:intergenic | 30.0% | |
| CATGGACAATTTGTGAAATA+TGG | - | chr6_2:63939667-63939686 | Msa0923470:intron | 30.0% | |
| TGGACAATTTGTGAAATATG+GGG | - | chr6_2:63939669-63939688 | Msa0923470:intron | 30.0% | |
| ATAATCGACACAAAATATCG+TGG | + | chr6_2:63939698-63939717 | None:intergenic | 30.0% | |
| !!! | ACGATATTTTGTGTCGATTA+TGG | - | chr6_2:63939697-63939716 | Msa0923470:intron | 30.0% |
| ! | GTGTAACTTGTACAAAATCA+CGG | + | chr6_2:63939821-63939840 | None:intergenic | 30.0% |
| ! | CCGTGATTTTGTATAGATTA+AGG | - | chr6_2:63939892-63939911 | Msa0923470:intron | 30.0% |
| AGGCATAGAAATTAAAAAGG+TGG | - | chr6_2:63940025-63940044 | Msa0923470:intron | 30.0% | |
| AGCCAAATAAGTAGAATGTT+CGG | + | chr6_2:63940129-63940148 | None:intergenic | 30.0% | |
| !!! | TTTTTTTGGTAACATAGTCG+AGG | - | chr6_2:63940472-63940491 | Msa0923470:intron | 30.0% |
| !!! | TTTTTTGGTAACATAGTCGA+GGG | - | chr6_2:63940473-63940492 | Msa0923470:intron | 30.0% |
| TCTCTGCATAGTAATATCTA+TGG | - | chr6_2:63940542-63940561 | Msa0923470:intron | 30.0% | |
| TTGTGTAAGCATGTTATACT+TGG | - | chr6_2:63940659-63940678 | Msa0923470:intron | 30.0% | |
| ! | AGCTTGTAACTTTTCAAAGA+CGG | - | chr6_2:63940903-63940922 | Msa0923470:intron | 30.0% |
| !!! | ATGTATTTTTTGTGTACGAC+AGG | - | chr6_2:63939248-63939267 | Msa0923470:CDS | 30.0% |
| TTATTCCCCGAAATGAATTA+TGG | - | chr6_2:63939366-63939385 | Msa0923470:intron | 30.0% | |
| ATCATCCATAATTCATTTCG+GGG | + | chr6_2:63939374-63939393 | None:intergenic | 30.0% | |
| ! | ATGTGTCGGTATTATATACA+CGG | + | chr6_2:63939464-63939483 | None:intergenic | 30.0% |
| TTCAATATAACCACATGTGT+CGG | + | chr6_2:63939478-63939497 | None:intergenic | 30.0% | |
| ! | GTCTAAAGTTTACTTGCATA+TGG | + | chr6_2:63939599-63939618 | None:intergenic | 30.0% |
| AGACTTAGTGTTGTCAAATA+TGG | - | chr6_2:63939615-63939634 | Msa0923470:intron | 30.0% | |
| TTGTCAAATATGGAGTGTAT+TGG | - | chr6_2:63939625-63939644 | Msa0923470:intron | 30.0% | |
| CATATTTCACAAATTGTCCA+TGG | + | chr6_2:63939669-63939688 | None:intergenic | 30.0% | |
| CATGGACAATTTGTGAAATA+TGG | - | chr6_2:63939667-63939686 | Msa0923470:intron | 30.0% | |
| TGGACAATTTGTGAAATATG+GGG | - | chr6_2:63939669-63939688 | Msa0923470:intron | 30.0% | |
| ATAATCGACACAAAATATCG+TGG | + | chr6_2:63939698-63939717 | None:intergenic | 30.0% | |
| !!! | ACGATATTTTGTGTCGATTA+TGG | - | chr6_2:63939697-63939716 | Msa0923470:intron | 30.0% |
| ! | GTGTAACTTGTACAAAATCA+CGG | + | chr6_2:63939821-63939840 | None:intergenic | 30.0% |
| ! | CCGTGATTTTGTATAGATTA+AGG | - | chr6_2:63939892-63939911 | Msa0923470:intron | 30.0% |
| AGGCATAGAAATTAAAAAGG+TGG | - | chr6_2:63940025-63940044 | Msa0923470:intron | 30.0% | |
| AGCCAAATAAGTAGAATGTT+CGG | + | chr6_2:63940129-63940148 | None:intergenic | 30.0% | |
| !!! | TTTTTTTGGTAACATAGTCG+AGG | - | chr6_2:63940472-63940491 | Msa0923470:intron | 30.0% |
| !!! | TTTTTTGGTAACATAGTCGA+GGG | - | chr6_2:63940473-63940492 | Msa0923470:intron | 30.0% |
| TCTCTGCATAGTAATATCTA+TGG | - | chr6_2:63940542-63940561 | Msa0923470:intron | 30.0% | |
| TTGTGTAAGCATGTTATACT+TGG | - | chr6_2:63940659-63940678 | Msa0923470:intron | 30.0% | |
| ! | AGCTTGTAACTTTTCAAAGA+CGG | - | chr6_2:63940903-63940922 | Msa0923470:intron | 30.0% |
| GTATATAATACCGACACATG+TGG | - | chr6_2:63939465-63939484 | Msa0923470:intron | 35.0% | |
| !! | AGACATTTTAACAACTGCCA+TGG | - | chr6_2:63939649-63939668 | Msa0923470:intron | 35.0% |
| GGACAATTTGTGAAATATGG+GGG | - | chr6_2:63939670-63939689 | Msa0923470:intron | 35.0% | |
| ! | TAACTTGTACAAAATCACGG+TGG | + | chr6_2:63939818-63939837 | None:intergenic | 35.0% |
| TTGAAGCTACTGCAAAATCA+TGG | - | chr6_2:63939844-63939863 | Msa0923470:intron | 35.0% | |
| AGTATATACTTTATCTGCGC+TGG | + | chr6_2:63939999-63940018 | None:intergenic | 35.0% | |
| TTCTACAACGTCAAATACCA+AGG | + | chr6_2:63940099-63940118 | None:intergenic | 35.0% | |
| CTCCGAACATTCTACTTATT+TGG | - | chr6_2:63940124-63940143 | Msa0923470:CDS | 35.0% | |
| AATTTATGCTATCGCTTCAG+TGG | - | chr6_2:63940265-63940284 | Msa0923470:intron | 35.0% | |
| ! | CTCAGATTGGATTAGAATTG+CGG | + | chr6_2:63940352-63940371 | None:intergenic | 35.0% |
| GCAATTCTAATCCAATCTGA+GGG | - | chr6_2:63940351-63940370 | Msa0923470:intron | 35.0% | |
| !!! | CTGGAACTTTATTGGTTTTG+TGG | - | chr6_2:63940378-63940397 | Msa0923470:intron | 35.0% |
| TCGGAGTTATATATCTGACA+AGG | - | chr6_2:63940407-63940426 | Msa0923470:intron | 35.0% | |
| GTGTGATTAGAGATTCCATA+TGG | - | chr6_2:63940564-63940583 | Msa0923470:intron | 35.0% | |
| GATTAGAGATTCCATATGGT+AGG | - | chr6_2:63940568-63940587 | Msa0923470:intron | 35.0% | |
| ! | AGTTACAAGCTCTGGTTAAA+GGG | + | chr6_2:63940894-63940913 | None:intergenic | 35.0% |
| ! | AAGTTACAAGCTCTGGTTAA+AGG | + | chr6_2:63940895-63940914 | None:intergenic | 35.0% |
| ! | CTTTGAAAAGTTACAAGCTC+TGG | + | chr6_2:63940902-63940921 | None:intergenic | 35.0% |
| GTATATAATACCGACACATG+TGG | - | chr6_2:63939465-63939484 | Msa0923470:intron | 35.0% | |
| !! | AGACATTTTAACAACTGCCA+TGG | - | chr6_2:63939649-63939668 | Msa0923470:intron | 35.0% |
| GGACAATTTGTGAAATATGG+GGG | - | chr6_2:63939670-63939689 | Msa0923470:intron | 35.0% | |
| ! | TAACTTGTACAAAATCACGG+TGG | + | chr6_2:63939818-63939837 | None:intergenic | 35.0% |
| TTGAAGCTACTGCAAAATCA+TGG | - | chr6_2:63939844-63939863 | Msa0923470:intron | 35.0% | |
| AGTATATACTTTATCTGCGC+TGG | + | chr6_2:63939999-63940018 | None:intergenic | 35.0% | |
| TTCTACAACGTCAAATACCA+AGG | + | chr6_2:63940099-63940118 | None:intergenic | 35.0% | |
| CTCCGAACATTCTACTTATT+TGG | - | chr6_2:63940124-63940143 | Msa0923470:CDS | 35.0% | |
| AATTTATGCTATCGCTTCAG+TGG | - | chr6_2:63940265-63940284 | Msa0923470:intron | 35.0% | |
| ! | CTCAGATTGGATTAGAATTG+CGG | + | chr6_2:63940352-63940371 | None:intergenic | 35.0% |
| GCAATTCTAATCCAATCTGA+GGG | - | chr6_2:63940351-63940370 | Msa0923470:intron | 35.0% | |
| !!! | CTGGAACTTTATTGGTTTTG+TGG | - | chr6_2:63940378-63940397 | Msa0923470:intron | 35.0% |
| TCGGAGTTATATATCTGACA+AGG | - | chr6_2:63940407-63940426 | Msa0923470:intron | 35.0% | |
| GTGTGATTAGAGATTCCATA+TGG | - | chr6_2:63940564-63940583 | Msa0923470:intron | 35.0% | |
| GATTAGAGATTCCATATGGT+AGG | - | chr6_2:63940568-63940587 | Msa0923470:intron | 35.0% | |
| ! | AGTTACAAGCTCTGGTTAAA+GGG | + | chr6_2:63940894-63940913 | None:intergenic | 35.0% |
| ! | AAGTTACAAGCTCTGGTTAA+AGG | + | chr6_2:63940895-63940914 | None:intergenic | 35.0% |
| ! | CTTTGAAAAGTTACAAGCTC+TGG | + | chr6_2:63940902-63940921 | None:intergenic | 35.0% |
| TCGCTTAGATTGTTGCATCA+TGG | - | chr6_2:63939310-63939329 | Msa0923470:intron | 40.0% | |
| ! | TGGTTGATGTTCTTGCTAAG+AGG | - | chr6_2:63939330-63939349 | Msa0923470:intron | 40.0% |
| TTTCTGACTGAAGATGTGTC+TGG | - | chr6_2:63939430-63939449 | Msa0923470:intron | 40.0% | |
| TGAGTTTGACGAAATCAAGG+TGG | + | chr6_2:63939872-63939891 | None:intergenic | 40.0% | |
| !! | GTTTGTTTTCGGAATAACGG+TGG | - | chr6_2:63939938-63939957 | Msa0923470:intron | 40.0% |
| ATGAGCATAAGAGAAGCTTC+TGG | + | chr6_2:63939976-63939995 | None:intergenic | 40.0% | |
| GAAGAGCTTATGTATGAAGC+TGG | - | chr6_2:63940061-63940080 | Msa0923470:intron | 40.0% | |
| TTTCTTTAATCTGCACCCTG+AGG | - | chr6_2:63940181-63940200 | Msa0923470:intron | 40.0% | |
| CGCAATTCTAATCCAATCTG+AGG | - | chr6_2:63940350-63940369 | Msa0923470:intron | 40.0% | |
| !! | AGGGACTTCTGGAACTTTAT+TGG | - | chr6_2:63940370-63940389 | Msa0923470:intron | 40.0% |
| !!! | ATTGGTTTTGTGGCTTGTGT+CGG | - | chr6_2:63940388-63940407 | Msa0923470:intron | 40.0% |
| GTAACATAGTCGAGGGATTA+TGG | - | chr6_2:63940480-63940499 | Msa0923470:intron | 40.0% | |
| GCTTACATCTACCTACCATA+TGG | + | chr6_2:63940582-63940601 | None:intergenic | 40.0% | |
| TCGCTTAGATTGTTGCATCA+TGG | - | chr6_2:63939310-63939329 | Msa0923470:intron | 40.0% | |
| ! | TGGTTGATGTTCTTGCTAAG+AGG | - | chr6_2:63939330-63939349 | Msa0923470:intron | 40.0% |
| TTTCTGACTGAAGATGTGTC+TGG | - | chr6_2:63939430-63939449 | Msa0923470:intron | 40.0% | |
| TGAGTTTGACGAAATCAAGG+TGG | + | chr6_2:63939872-63939891 | None:intergenic | 40.0% | |
| !! | GTTTGTTTTCGGAATAACGG+TGG | - | chr6_2:63939938-63939957 | Msa0923470:intron | 40.0% |
| ATGAGCATAAGAGAAGCTTC+TGG | + | chr6_2:63939976-63939995 | None:intergenic | 40.0% | |
| GAAGAGCTTATGTATGAAGC+TGG | - | chr6_2:63940061-63940080 | Msa0923470:intron | 40.0% | |
| TTTCTTTAATCTGCACCCTG+AGG | - | chr6_2:63940181-63940200 | Msa0923470:intron | 40.0% | |
| CGCAATTCTAATCCAATCTG+AGG | - | chr6_2:63940350-63940369 | Msa0923470:intron | 40.0% | |
| !! | AGGGACTTCTGGAACTTTAT+TGG | - | chr6_2:63940370-63940389 | Msa0923470:intron | 40.0% |
| !!! | ATTGGTTTTGTGGCTTGTGT+CGG | - | chr6_2:63940388-63940407 | Msa0923470:intron | 40.0% |
| GTAACATAGTCGAGGGATTA+TGG | - | chr6_2:63940480-63940499 | Msa0923470:intron | 40.0% | |
| GCTTACATCTACCTACCATA+TGG | + | chr6_2:63940582-63940601 | None:intergenic | 40.0% | |
| TGTGATTGTCCGTGCTTCAT+AGG | - | chr6_2:63939534-63939553 | Msa0923470:intron | 45.0% | |
| CGGTGAGTTTGACGAAATCA+AGG | + | chr6_2:63939875-63939894 | None:intergenic | 45.0% | |
| GCTGGATTTGAAGATCACCT+TGG | - | chr6_2:63940079-63940098 | Msa0923470:CDS | 45.0% | |
| AATCCAATCTGAGGGACTTC+TGG | - | chr6_2:63940359-63940378 | Msa0923470:intron | 45.0% | |
| GTTAAAGGGCTCTTGTAGTC+TGG | + | chr6_2:63940880-63940899 | None:intergenic | 45.0% | |
| TGTGATTGTCCGTGCTTCAT+AGG | - | chr6_2:63939534-63939553 | Msa0923470:intron | 45.0% | |
| CGGTGAGTTTGACGAAATCA+AGG | + | chr6_2:63939875-63939894 | None:intergenic | 45.0% | |
| GCTGGATTTGAAGATCACCT+TGG | - | chr6_2:63940079-63940098 | Msa0923470:CDS | 45.0% | |
| AATCCAATCTGAGGGACTTC+TGG | - | chr6_2:63940359-63940378 | Msa0923470:intron | 45.0% | |
| GTTAAAGGGCTCTTGTAGTC+TGG | + | chr6_2:63940880-63940899 | None:intergenic | 45.0% | |
| GTTCCAGAAGTCCCTCAGAT+TGG | + | chr6_2:63940365-63940384 | None:intergenic | 50.0% | |
| GTTCCAGAAGTCCCTCAGAT+TGG | + | chr6_2:63940365-63940384 | None:intergenic | 50.0% | |
| GGCTCTTGTAGTCTGGCCTC+TGG | + | chr6_2:63940873-63940892 | None:intergenic | 60.0% | |
| GGCTCTTGTAGTCTGGCCTC+TGG | + | chr6_2:63940873-63940892 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 63939239 | 63940933 | 63939239 | ID=Msa0923470;Name=Msa0923470 |
| chr6_2 | mRNA | 63939239 | 63940933 | 63939239 | ID=Msa0923470-mRNA-1;Parent=Msa0923470;Name=Msa0923470-mRNA-1;_AED=0.44;_eAED=0.58;_QI=0|0|0|0.75|0|0|4|0|81 |
| chr6_2 | exon | 63940923 | 63940933 | 63940923 | ID=Msa0923470-mRNA-1:exon:9991;Parent=Msa0923470-mRNA-1 |
| chr6_2 | exon | 63940852 | 63940902 | 63940852 | ID=Msa0923470-mRNA-1:exon:9990;Parent=Msa0923470-mRNA-1 |
| chr6_2 | exon | 63940072 | 63940195 | 63940072 | ID=Msa0923470-mRNA-1:exon:9989;Parent=Msa0923470-mRNA-1 |
| chr6_2 | exon | 63939239 | 63939298 | 63939239 | ID=Msa0923470-mRNA-1:exon:9988;Parent=Msa0923470-mRNA-1 |
| chr6_2 | CDS | 63940923 | 63940933 | 63940923 | ID=Msa0923470-mRNA-1:cds;Parent=Msa0923470-mRNA-1 |
| chr6_2 | CDS | 63940852 | 63940902 | 63940852 | ID=Msa0923470-mRNA-1:cds;Parent=Msa0923470-mRNA-1 |
| chr6_2 | CDS | 63940072 | 63940195 | 63940072 | ID=Msa0923470-mRNA-1:cds;Parent=Msa0923470-mRNA-1 |
| chr6_2 | CDS | 63939239 | 63939298 | 63939239 | ID=Msa0923470-mRNA-1:cds;Parent=Msa0923470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
