Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997130 | XP_004512799.1 | 56.790 | 81 | 12 | 1 | 5 | 62 | 56 | 136 | 2.60e-16 | 83.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997130 | A0A1S2Z0E1 | 56.790 | 81 | 12 | 1 | 5 | 62 | 56 | 136 | 1.24e-16 | 83.2 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0997120 | Msa0997130 | 0.813545 | 2.424376e-51 | -8.615850e-47 |
| Msa0923460 | Msa0997130 | 0.820242 | 7.606620e-53 | -8.615850e-47 |
| Msa0923470 | Msa0997130 | 0.912646 | 1.533792e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997130 | MtrunA17_Chr6g0482501 | 55.556 | 81 | 13 | 1 | 5 | 62 | 58 | 138 | 1.38e-19 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 9 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTTACAAGCTCTGGTTAA+AGG | 0.245540 | 6_4:+76201496 | None:intergenic |
| TGAAGGCATAGAAATTAAAA+AGG | 0.323462 | 6_4:-76202366 | Msa0997130:CDS |
| CTTTGAAAAGTTACAAGCTC+TGG | 0.380448 | 6_4:+76201489 | None:intergenic |
| GTTAAAGGGCTCTTGTAGTC+TGG | 0.397204 | 6_4:+76201511 | None:intergenic |
| AGTTACAAGCTCTGGTTAAA+GGG | 0.430469 | 6_4:+76201497 | None:intergenic |
| AGTATATACTTTATCTGCGC+TGG | 0.457171 | 6_4:+76202392 | None:intergenic |
| GAAGAGCTTATGTATGAAGC+TGG | 0.512051 | 6_4:-76202327 | Msa0997130:CDS |
| ATAAAGTATATACTTTCTGA+AGG | 0.598700 | 6_4:-76202383 | Msa0997130:CDS |
| GCTGGATTTGAAGATCACCT+TGG | 0.629238 | 6_4:-76202309 | Msa0997130:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTGTTTGTTTT+CGG | - | chr6_4:76202165-76202184 | Msa0997130:intron | 10.0% |
| !!! | TTTTTTTTTTTGTTTGTTTT+CGG | - | chr6_4:76202165-76202184 | Msa0997130:intron | 10.0% |
| !! | TTATATGATATTTAAATTCC+AGG | - | chr6_4:76202388-76202407 | Msa0997130:CDS | 15.0% |
| !! | AACAAAAATAAATATATCTG+AGG | + | chr6_4:76203019-76203038 | None:intergenic | 15.0% |
| !! | TTAATTTAATTATATTCCAG+AGG | - | chr6_4:76203092-76203111 | Msa0997130:CDS | 15.0% |
| !! | TTATATGATATTTAAATTCC+AGG | - | chr6_4:76202388-76202407 | Msa0997130:CDS | 15.0% |
| !! | AACAAAAATAAATATATCTG+AGG | + | chr6_4:76203019-76203038 | None:intergenic | 15.0% |
| !! | TTAATTTAATTATATTCCAG+AGG | - | chr6_4:76203092-76203111 | Msa0997130:CDS | 15.0% |
| !! | TTATCATCCATAATTCATTT+CGG | + | chr6_4:76201614-76201633 | None:intergenic | 20.0% |
| !!! | TAAAGATACTATCCATTTTA+AGG | - | chr6_4:76201631-76201650 | Msa0997130:intron | 20.0% |
| !! | ATCAAAATACAACCTTAAAA+TGG | + | chr6_4:76201646-76201665 | None:intergenic | 20.0% |
| !! | AAAAAACACTATATTCAAAG+CGG | + | chr6_4:76201961-76201980 | None:intergenic | 20.0% |
| !!! | ATTTTGTATAGATTAAGGAA+GGG | - | chr6_4:76202135-76202154 | Msa0997130:intron | 20.0% |
| !! | ATAAAGTATATACTTTCTGA+AGG | - | chr6_4:76202243-76202262 | Msa0997130:intron | 20.0% |
| !!! | AGGTAACATTTTTTGATTTA+AGG | - | chr6_4:76202439-76202458 | Msa0997130:intron | 20.0% |
| !!! | GGTAACATTTTTTGATTTAA+GGG | - | chr6_4:76202440-76202459 | Msa0997130:intron | 20.0% |
| !!! | ATTGTATTTTCTGTATTTGA+CGG | - | chr6_4:76202477-76202496 | Msa0997130:intron | 20.0% |
| !! | CAATGTGATACTATTTATTA+CGG | - | chr6_4:76202679-76202698 | Msa0997130:intron | 20.0% |
| !!! | TTACGGCAATTTTTTTTTTT+TGG | - | chr6_4:76202696-76202715 | Msa0997130:intron | 20.0% |
| !! | ATTCAAGATTATTACTGTAA+TGG | - | chr6_4:76202742-76202761 | Msa0997130:intron | 20.0% |
| !!! | TTTTTTTAACTGCTTTTCTT+TGG | - | chr6_4:76202988-76203007 | Msa0997130:intron | 20.0% |
| !!! | TTTTTTAACTGCTTTTCTTT+GGG | - | chr6_4:76202989-76203008 | Msa0997130:intron | 20.0% |
| !! | TTATCATCCATAATTCATTT+CGG | + | chr6_4:76201614-76201633 | None:intergenic | 20.0% |
| !!! | TAAAGATACTATCCATTTTA+AGG | - | chr6_4:76201631-76201650 | Msa0997130:intron | 20.0% |
| !! | ATCAAAATACAACCTTAAAA+TGG | + | chr6_4:76201646-76201665 | None:intergenic | 20.0% |
| !! | AAAAAACACTATATTCAAAG+CGG | + | chr6_4:76201961-76201980 | None:intergenic | 20.0% |
| !!! | ATTTTGTATAGATTAAGGAA+GGG | - | chr6_4:76202135-76202154 | Msa0997130:intron | 20.0% |
| !! | ATAAAGTATATACTTTCTGA+AGG | - | chr6_4:76202243-76202262 | Msa0997130:intron | 20.0% |
| !!! | AGGTAACATTTTTTGATTTA+AGG | - | chr6_4:76202439-76202458 | Msa0997130:intron | 20.0% |
| !!! | GGTAACATTTTTTGATTTAA+GGG | - | chr6_4:76202440-76202459 | Msa0997130:intron | 20.0% |
| !!! | ATTGTATTTTCTGTATTTGA+CGG | - | chr6_4:76202477-76202496 | Msa0997130:intron | 20.0% |
| !! | CAATGTGATACTATTTATTA+CGG | - | chr6_4:76202679-76202698 | Msa0997130:intron | 20.0% |
| !!! | TTACGGCAATTTTTTTTTTT+TGG | - | chr6_4:76202696-76202715 | Msa0997130:intron | 20.0% |
| !! | ATTCAAGATTATTACTGTAA+TGG | - | chr6_4:76202742-76202761 | Msa0997130:intron | 20.0% |
| !!! | TTTTTTTAACTGCTTTTCTT+TGG | - | chr6_4:76202988-76203007 | Msa0997130:intron | 20.0% |
| !!! | TTTTTTAACTGCTTTTCTTT+GGG | - | chr6_4:76202989-76203008 | Msa0997130:intron | 20.0% |
| ! | TATCATCCATAATTCATTTC+GGG | + | chr6_4:76201613-76201632 | None:intergenic | 25.0% |
| !!! | TTATTTTAACCTATGAAGCA+CGG | + | chr6_4:76201784-76201803 | None:intergenic | 25.0% |
| ! | ATGGACAATTTGTGAAATAT+GGG | - | chr6_4:76201906-76201925 | Msa0997130:intron | 25.0% |
| !!! | GCTTTGAATATAGTGTTTTT+TGG | - | chr6_4:76201960-76201979 | Msa0997130:intron | 25.0% |
| ! | GATATTGTTTAGTGTATGTT+TGG | - | chr6_4:76201998-76202017 | Msa0997130:intron | 25.0% |
| ! | CCTTAATCTATACAAAATCA+CGG | + | chr6_4:76202133-76202152 | None:intergenic | 25.0% |
| !! | GATTTTGTATAGATTAAGGA+AGG | - | chr6_4:76202134-76202153 | Msa0997130:intron | 25.0% |
| !!! | TTTGTTTGTTTTCGGAATAA+CGG | - | chr6_4:76202173-76202192 | Msa0997130:intron | 25.0% |
| !! | TGAAGGCATAGAAATTAAAA+AGG | - | chr6_4:76202260-76202279 | Msa0997130:intron | 25.0% |
| ! | ATTAAAGAAATTAATCAGCC+TGG | + | chr6_4:76202409-76202428 | None:intergenic | 25.0% |
| ! | AATCAAAAAATGTTACCTCA+GGG | + | chr6_4:76202437-76202456 | None:intergenic | 25.0% |
| ! | AAATCAAAAAATGTTACCTC+AGG | + | chr6_4:76202438-76202457 | None:intergenic | 25.0% |
| !! | TAGTATCACATTGATTATGT+AGG | + | chr6_4:76202672-76202691 | None:intergenic | 25.0% |
| ! | TACGAGATTTAGTAGAAAAT+TGG | - | chr6_4:76202867-76202886 | Msa0997130:intron | 25.0% |
| ! | TATCATCCATAATTCATTTC+GGG | + | chr6_4:76201613-76201632 | None:intergenic | 25.0% |
| !!! | TTATTTTAACCTATGAAGCA+CGG | + | chr6_4:76201784-76201803 | None:intergenic | 25.0% |
| ! | ATGGACAATTTGTGAAATAT+GGG | - | chr6_4:76201906-76201925 | Msa0997130:intron | 25.0% |
| !!! | GCTTTGAATATAGTGTTTTT+TGG | - | chr6_4:76201960-76201979 | Msa0997130:intron | 25.0% |
| ! | GATATTGTTTAGTGTATGTT+TGG | - | chr6_4:76201998-76202017 | Msa0997130:intron | 25.0% |
| ! | CCTTAATCTATACAAAATCA+CGG | + | chr6_4:76202133-76202152 | None:intergenic | 25.0% |
| !! | GATTTTGTATAGATTAAGGA+AGG | - | chr6_4:76202134-76202153 | Msa0997130:intron | 25.0% |
| !!! | TTTGTTTGTTTTCGGAATAA+CGG | - | chr6_4:76202173-76202192 | Msa0997130:intron | 25.0% |
| !! | TGAAGGCATAGAAATTAAAA+AGG | - | chr6_4:76202260-76202279 | Msa0997130:intron | 25.0% |
| ! | ATTAAAGAAATTAATCAGCC+TGG | + | chr6_4:76202409-76202428 | None:intergenic | 25.0% |
| ! | AATCAAAAAATGTTACCTCA+GGG | + | chr6_4:76202437-76202456 | None:intergenic | 25.0% |
| ! | AAATCAAAAAATGTTACCTC+AGG | + | chr6_4:76202438-76202457 | None:intergenic | 25.0% |
| !! | TAGTATCACATTGATTATGT+AGG | + | chr6_4:76202672-76202691 | None:intergenic | 25.0% |
| ! | TACGAGATTTAGTAGAAAAT+TGG | - | chr6_4:76202867-76202886 | Msa0997130:intron | 25.0% |
| !!! | ATGTATTTTTTGTGTACGAC+AGG | - | chr6_4:76201486-76201505 | Msa0997130:CDS | 30.0% |
| TTATTCCCCGAAATGAATTA+TGG | - | chr6_4:76201604-76201623 | Msa0997130:intron | 30.0% | |
| ATCATCCATAATTCATTTCG+GGG | + | chr6_4:76201612-76201631 | None:intergenic | 30.0% | |
| ! | ATGTGTCGGTATTATATACA+CGG | + | chr6_4:76201702-76201721 | None:intergenic | 30.0% |
| TTCAATATAACCACATGTGT+CGG | + | chr6_4:76201716-76201735 | None:intergenic | 30.0% | |
| ! | GTCTAAAGTTTACTTGCATA+TGG | + | chr6_4:76201837-76201856 | None:intergenic | 30.0% |
| AGACTTAGTGTTGTCAAATA+TGG | - | chr6_4:76201853-76201872 | Msa0997130:intron | 30.0% | |
| TTGTCAAATATGGAGTGTAT+TGG | - | chr6_4:76201863-76201882 | Msa0997130:intron | 30.0% | |
| CATATTTCACAAATTGTCCA+TGG | + | chr6_4:76201907-76201926 | None:intergenic | 30.0% | |
| CATGGACAATTTGTGAAATA+TGG | - | chr6_4:76201905-76201924 | Msa0997130:intron | 30.0% | |
| TGGACAATTTGTGAAATATG+GGG | - | chr6_4:76201907-76201926 | Msa0997130:intron | 30.0% | |
| ATAATCGACACAAAATATCG+TGG | + | chr6_4:76201936-76201955 | None:intergenic | 30.0% | |
| !!! | ACGATATTTTGTGTCGATTA+TGG | - | chr6_4:76201935-76201954 | Msa0997130:intron | 30.0% |
| ! | GTGTAACTTGTACAAAATCA+CGG | + | chr6_4:76202059-76202078 | None:intergenic | 30.0% |
| ! | CCGTGATTTTGTATAGATTA+AGG | - | chr6_4:76202130-76202149 | Msa0997130:intron | 30.0% |
| AGGCATAGAAATTAAAAAGG+TGG | - | chr6_4:76202263-76202282 | Msa0997130:intron | 30.0% | |
| AGCCAAATAAGTAGAATGTT+CGG | + | chr6_4:76202367-76202386 | None:intergenic | 30.0% | |
| !!! | TTTTTTTGGTAACATAGTCG+AGG | - | chr6_4:76202710-76202729 | Msa0997130:intron | 30.0% |
| !!! | TTTTTTGGTAACATAGTCGA+GGG | - | chr6_4:76202711-76202730 | Msa0997130:intron | 30.0% |
| TCTCTGCATAGTAATATCTA+TGG | - | chr6_4:76202780-76202799 | Msa0997130:intron | 30.0% | |
| TTGTGTAAGCATGTTATACT+TGG | - | chr6_4:76202897-76202916 | Msa0997130:intron | 30.0% | |
| ! | AGCTTGTAACTTTTCAAAGA+CGG | - | chr6_4:76203141-76203160 | Msa0997130:intron | 30.0% |
| !!! | ATGTATTTTTTGTGTACGAC+AGG | - | chr6_4:76201486-76201505 | Msa0997130:CDS | 30.0% |
| TTATTCCCCGAAATGAATTA+TGG | - | chr6_4:76201604-76201623 | Msa0997130:intron | 30.0% | |
| ATCATCCATAATTCATTTCG+GGG | + | chr6_4:76201612-76201631 | None:intergenic | 30.0% | |
| ! | ATGTGTCGGTATTATATACA+CGG | + | chr6_4:76201702-76201721 | None:intergenic | 30.0% |
| TTCAATATAACCACATGTGT+CGG | + | chr6_4:76201716-76201735 | None:intergenic | 30.0% | |
| ! | GTCTAAAGTTTACTTGCATA+TGG | + | chr6_4:76201837-76201856 | None:intergenic | 30.0% |
| AGACTTAGTGTTGTCAAATA+TGG | - | chr6_4:76201853-76201872 | Msa0997130:intron | 30.0% | |
| TTGTCAAATATGGAGTGTAT+TGG | - | chr6_4:76201863-76201882 | Msa0997130:intron | 30.0% | |
| CATATTTCACAAATTGTCCA+TGG | + | chr6_4:76201907-76201926 | None:intergenic | 30.0% | |
| CATGGACAATTTGTGAAATA+TGG | - | chr6_4:76201905-76201924 | Msa0997130:intron | 30.0% | |
| TGGACAATTTGTGAAATATG+GGG | - | chr6_4:76201907-76201926 | Msa0997130:intron | 30.0% | |
| ATAATCGACACAAAATATCG+TGG | + | chr6_4:76201936-76201955 | None:intergenic | 30.0% | |
| !!! | ACGATATTTTGTGTCGATTA+TGG | - | chr6_4:76201935-76201954 | Msa0997130:intron | 30.0% |
| ! | GTGTAACTTGTACAAAATCA+CGG | + | chr6_4:76202059-76202078 | None:intergenic | 30.0% |
| ! | CCGTGATTTTGTATAGATTA+AGG | - | chr6_4:76202130-76202149 | Msa0997130:intron | 30.0% |
| AGGCATAGAAATTAAAAAGG+TGG | - | chr6_4:76202263-76202282 | Msa0997130:intron | 30.0% | |
| AGCCAAATAAGTAGAATGTT+CGG | + | chr6_4:76202367-76202386 | None:intergenic | 30.0% | |
| !!! | TTTTTTTGGTAACATAGTCG+AGG | - | chr6_4:76202710-76202729 | Msa0997130:intron | 30.0% |
| !!! | TTTTTTGGTAACATAGTCGA+GGG | - | chr6_4:76202711-76202730 | Msa0997130:intron | 30.0% |
| TCTCTGCATAGTAATATCTA+TGG | - | chr6_4:76202780-76202799 | Msa0997130:intron | 30.0% | |
| TTGTGTAAGCATGTTATACT+TGG | - | chr6_4:76202897-76202916 | Msa0997130:intron | 30.0% | |
| ! | AGCTTGTAACTTTTCAAAGA+CGG | - | chr6_4:76203141-76203160 | Msa0997130:intron | 30.0% |
| GTATATAATACCGACACATG+TGG | - | chr6_4:76201703-76201722 | Msa0997130:intron | 35.0% | |
| !! | AGACATTTTAACAACTGCCA+TGG | - | chr6_4:76201887-76201906 | Msa0997130:intron | 35.0% |
| GGACAATTTGTGAAATATGG+GGG | - | chr6_4:76201908-76201927 | Msa0997130:intron | 35.0% | |
| ! | TAACTTGTACAAAATCACGG+TGG | + | chr6_4:76202056-76202075 | None:intergenic | 35.0% |
| TTGAAGCTACTGCAAAATCA+TGG | - | chr6_4:76202082-76202101 | Msa0997130:intron | 35.0% | |
| AGTATATACTTTATCTGCGC+TGG | + | chr6_4:76202237-76202256 | None:intergenic | 35.0% | |
| TTCTACAACGTCAAATACCA+AGG | + | chr6_4:76202337-76202356 | None:intergenic | 35.0% | |
| CTCCGAACATTCTACTTATT+TGG | - | chr6_4:76202362-76202381 | Msa0997130:CDS | 35.0% | |
| AATTTATGCTATCGCTTCAG+TGG | - | chr6_4:76202503-76202522 | Msa0997130:intron | 35.0% | |
| ! | CTCAGATTGGATTAGAATTG+CGG | + | chr6_4:76202590-76202609 | None:intergenic | 35.0% |
| GCAATTCTAATCCAATCTGA+GGG | - | chr6_4:76202589-76202608 | Msa0997130:intron | 35.0% | |
| !!! | CTGGAACTTTATTGGTTTTG+TGG | - | chr6_4:76202616-76202635 | Msa0997130:intron | 35.0% |
| TCGGAGTTATATATCTGACA+AGG | - | chr6_4:76202645-76202664 | Msa0997130:intron | 35.0% | |
| GTGTGATTAGAGATTCCATA+TGG | - | chr6_4:76202802-76202821 | Msa0997130:intron | 35.0% | |
| GATTAGAGATTCCATATGGT+AGG | - | chr6_4:76202806-76202825 | Msa0997130:intron | 35.0% | |
| ! | AGTTACAAGCTCTGGTTAAA+GGG | + | chr6_4:76203132-76203151 | None:intergenic | 35.0% |
| ! | AAGTTACAAGCTCTGGTTAA+AGG | + | chr6_4:76203133-76203152 | None:intergenic | 35.0% |
| ! | CTTTGAAAAGTTACAAGCTC+TGG | + | chr6_4:76203140-76203159 | None:intergenic | 35.0% |
| GTATATAATACCGACACATG+TGG | - | chr6_4:76201703-76201722 | Msa0997130:intron | 35.0% | |
| !! | AGACATTTTAACAACTGCCA+TGG | - | chr6_4:76201887-76201906 | Msa0997130:intron | 35.0% |
| GGACAATTTGTGAAATATGG+GGG | - | chr6_4:76201908-76201927 | Msa0997130:intron | 35.0% | |
| ! | TAACTTGTACAAAATCACGG+TGG | + | chr6_4:76202056-76202075 | None:intergenic | 35.0% |
| TTGAAGCTACTGCAAAATCA+TGG | - | chr6_4:76202082-76202101 | Msa0997130:intron | 35.0% | |
| AGTATATACTTTATCTGCGC+TGG | + | chr6_4:76202237-76202256 | None:intergenic | 35.0% | |
| TTCTACAACGTCAAATACCA+AGG | + | chr6_4:76202337-76202356 | None:intergenic | 35.0% | |
| CTCCGAACATTCTACTTATT+TGG | - | chr6_4:76202362-76202381 | Msa0997130:CDS | 35.0% | |
| AATTTATGCTATCGCTTCAG+TGG | - | chr6_4:76202503-76202522 | Msa0997130:intron | 35.0% | |
| ! | CTCAGATTGGATTAGAATTG+CGG | + | chr6_4:76202590-76202609 | None:intergenic | 35.0% |
| GCAATTCTAATCCAATCTGA+GGG | - | chr6_4:76202589-76202608 | Msa0997130:intron | 35.0% | |
| !!! | CTGGAACTTTATTGGTTTTG+TGG | - | chr6_4:76202616-76202635 | Msa0997130:intron | 35.0% |
| TCGGAGTTATATATCTGACA+AGG | - | chr6_4:76202645-76202664 | Msa0997130:intron | 35.0% | |
| GTGTGATTAGAGATTCCATA+TGG | - | chr6_4:76202802-76202821 | Msa0997130:intron | 35.0% | |
| GATTAGAGATTCCATATGGT+AGG | - | chr6_4:76202806-76202825 | Msa0997130:intron | 35.0% | |
| ! | AGTTACAAGCTCTGGTTAAA+GGG | + | chr6_4:76203132-76203151 | None:intergenic | 35.0% |
| ! | AAGTTACAAGCTCTGGTTAA+AGG | + | chr6_4:76203133-76203152 | None:intergenic | 35.0% |
| ! | CTTTGAAAAGTTACAAGCTC+TGG | + | chr6_4:76203140-76203159 | None:intergenic | 35.0% |
| TCGCTTAGATTGTTGCATCA+TGG | - | chr6_4:76201548-76201567 | Msa0997130:intron | 40.0% | |
| ! | TGGTTGATGTTCTTGCTAAG+AGG | - | chr6_4:76201568-76201587 | Msa0997130:intron | 40.0% |
| TTTCTGACTGAAGATGTGTC+TGG | - | chr6_4:76201668-76201687 | Msa0997130:intron | 40.0% | |
| TGAGTTTGACGAAATCAAGG+TGG | + | chr6_4:76202110-76202129 | None:intergenic | 40.0% | |
| !! | GTTTGTTTTCGGAATAACGG+TGG | - | chr6_4:76202176-76202195 | Msa0997130:intron | 40.0% |
| ATGAGCATAAGAGAAGCTTC+TGG | + | chr6_4:76202214-76202233 | None:intergenic | 40.0% | |
| GAAGAGCTTATGTATGAAGC+TGG | - | chr6_4:76202299-76202318 | Msa0997130:intron | 40.0% | |
| TTTCTTTAATCTGCACCCTG+AGG | - | chr6_4:76202419-76202438 | Msa0997130:intron | 40.0% | |
| CGCAATTCTAATCCAATCTG+AGG | - | chr6_4:76202588-76202607 | Msa0997130:intron | 40.0% | |
| !! | AGGGACTTCTGGAACTTTAT+TGG | - | chr6_4:76202608-76202627 | Msa0997130:intron | 40.0% |
| !!! | ATTGGTTTTGTGGCTTGTGT+CGG | - | chr6_4:76202626-76202645 | Msa0997130:intron | 40.0% |
| GTAACATAGTCGAGGGATTA+TGG | - | chr6_4:76202718-76202737 | Msa0997130:intron | 40.0% | |
| GCTTACATCTACCTACCATA+TGG | + | chr6_4:76202820-76202839 | None:intergenic | 40.0% | |
| TCGCTTAGATTGTTGCATCA+TGG | - | chr6_4:76201548-76201567 | Msa0997130:intron | 40.0% | |
| ! | TGGTTGATGTTCTTGCTAAG+AGG | - | chr6_4:76201568-76201587 | Msa0997130:intron | 40.0% |
| TTTCTGACTGAAGATGTGTC+TGG | - | chr6_4:76201668-76201687 | Msa0997130:intron | 40.0% | |
| TGAGTTTGACGAAATCAAGG+TGG | + | chr6_4:76202110-76202129 | None:intergenic | 40.0% | |
| !! | GTTTGTTTTCGGAATAACGG+TGG | - | chr6_4:76202176-76202195 | Msa0997130:intron | 40.0% |
| ATGAGCATAAGAGAAGCTTC+TGG | + | chr6_4:76202214-76202233 | None:intergenic | 40.0% | |
| GAAGAGCTTATGTATGAAGC+TGG | - | chr6_4:76202299-76202318 | Msa0997130:intron | 40.0% | |
| TTTCTTTAATCTGCACCCTG+AGG | - | chr6_4:76202419-76202438 | Msa0997130:intron | 40.0% | |
| CGCAATTCTAATCCAATCTG+AGG | - | chr6_4:76202588-76202607 | Msa0997130:intron | 40.0% | |
| !! | AGGGACTTCTGGAACTTTAT+TGG | - | chr6_4:76202608-76202627 | Msa0997130:intron | 40.0% |
| !!! | ATTGGTTTTGTGGCTTGTGT+CGG | - | chr6_4:76202626-76202645 | Msa0997130:intron | 40.0% |
| GTAACATAGTCGAGGGATTA+TGG | - | chr6_4:76202718-76202737 | Msa0997130:intron | 40.0% | |
| GCTTACATCTACCTACCATA+TGG | + | chr6_4:76202820-76202839 | None:intergenic | 40.0% | |
| TGTGATTGTCCGTGCTTCAT+AGG | - | chr6_4:76201772-76201791 | Msa0997130:intron | 45.0% | |
| CGGTGAGTTTGACGAAATCA+AGG | + | chr6_4:76202113-76202132 | None:intergenic | 45.0% | |
| GCTGGATTTGAAGATCACCT+TGG | - | chr6_4:76202317-76202336 | Msa0997130:CDS | 45.0% | |
| AATCCAATCTGAGGGACTTC+TGG | - | chr6_4:76202597-76202616 | Msa0997130:intron | 45.0% | |
| GTTAAAGGGCTCTTGTAGTC+TGG | + | chr6_4:76203118-76203137 | None:intergenic | 45.0% | |
| TGTGATTGTCCGTGCTTCAT+AGG | - | chr6_4:76201772-76201791 | Msa0997130:intron | 45.0% | |
| CGGTGAGTTTGACGAAATCA+AGG | + | chr6_4:76202113-76202132 | None:intergenic | 45.0% | |
| GCTGGATTTGAAGATCACCT+TGG | - | chr6_4:76202317-76202336 | Msa0997130:CDS | 45.0% | |
| AATCCAATCTGAGGGACTTC+TGG | - | chr6_4:76202597-76202616 | Msa0997130:intron | 45.0% | |
| GTTAAAGGGCTCTTGTAGTC+TGG | + | chr6_4:76203118-76203137 | None:intergenic | 45.0% | |
| GTTCCAGAAGTCCCTCAGAT+TGG | + | chr6_4:76202603-76202622 | None:intergenic | 50.0% | |
| GTTCCAGAAGTCCCTCAGAT+TGG | + | chr6_4:76202603-76202622 | None:intergenic | 50.0% | |
| GGCTCTTGTAGTCTGGCCTC+TGG | + | chr6_4:76203111-76203130 | None:intergenic | 60.0% | |
| GGCTCTTGTAGTCTGGCCTC+TGG | + | chr6_4:76203111-76203130 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 76201477 | 76203171 | 76201477 | ID=Msa0997130;Name=Msa0997130 |
| chr6_4 | mRNA | 76201477 | 76203171 | 76201477 | ID=Msa0997130-mRNA-1;Parent=Msa0997130;Name=Msa0997130-mRNA-1;_AED=0.44;_eAED=0.58;_QI=0|0|0|0.75|0|0|4|0|81 |
| chr6_4 | exon | 76203161 | 76203171 | 76203161 | ID=Msa0997130-mRNA-1:exon:14362;Parent=Msa0997130-mRNA-1 |
| chr6_4 | exon | 76203090 | 76203140 | 76203090 | ID=Msa0997130-mRNA-1:exon:14361;Parent=Msa0997130-mRNA-1 |
| chr6_4 | exon | 76202310 | 76202433 | 76202310 | ID=Msa0997130-mRNA-1:exon:14360;Parent=Msa0997130-mRNA-1 |
| chr6_4 | exon | 76201477 | 76201536 | 76201477 | ID=Msa0997130-mRNA-1:exon:14359;Parent=Msa0997130-mRNA-1 |
| chr6_4 | CDS | 76203161 | 76203171 | 76203161 | ID=Msa0997130-mRNA-1:cds;Parent=Msa0997130-mRNA-1 |
| chr6_4 | CDS | 76203090 | 76203140 | 76203090 | ID=Msa0997130-mRNA-1:cds;Parent=Msa0997130-mRNA-1 |
| chr6_4 | CDS | 76202310 | 76202433 | 76202310 | ID=Msa0997130-mRNA-1:cds;Parent=Msa0997130-mRNA-1 |
| chr6_4 | CDS | 76201477 | 76201536 | 76201477 | ID=Msa0997130-mRNA-1:cds;Parent=Msa0997130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
