AlfalfaGEDB | Msa0997120

M. sativa cultivar zhongmu-4 / Msa0997120

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0997120	RHN52607.1	54.701	117	34	1	1	98	8	124	8.02e-30	113

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0997120	A0A396HP13	54.701	117	34	1	1	98	8	124	3.83e-30	113

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0619960	Msa0997120	-0.805877	1.079668e-49	-8.615850e-47
Msa0620050	Msa0997120	-0.816174	6.335692e-52	-8.615850e-47
Msa0923460	Msa0997120	0.973275	3.747401e-136	-8.615850e-47
Msa0923470	Msa0997120	0.823754	1.168367e-53	-8.615850e-47
Msa0997120	Msa0997130	0.813545	2.424376e-51	-8.615850e-47
Msa0997120	Msa1330080	-0.808182	3.510955e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0997120	MtrunA17_Chr6g0482371	54.701	117	34	1	1	98	8	124	7.38e-34	113
Msa0997120	MtrunA17_Chr6g0482501	38.889	144	41	1	1	97	388	531	5.71e-20	83.2
Msa0997120	MtrunA17_Chr1g0172551	58.929	56	23	0	2	57	91	146	7.42e-15	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 32 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCCTTAATCAATCCTTTG+AGG	0.420274	6_4:-76200740	Msa0997120:CDS
AAGGTATACCTCCTGAGGCA+GGG	0.624468	6_4:+76200930	None:intergenic
ACACCTGAGAGATTGTTGCT+CGG	0.646918	6_4:-76201128	Msa0997120:five_prime_UTR
ACCTGGCAAAGGATATTCTG+AGG	0.611952	6_4:-76200977	Msa0997120:CDS
ACCTTCTTGCAAGGTCAGTC+TGG	0.427797	6_4:+76200515	None:intergenic
ACTCGTCTTCTTTGGTCACA+TGG	0.531127	6_4:+76200205	None:intergenic
AGAATATCCTTTGCCAGGTT+TGG	0.313974	6_4:+76200981	None:intergenic
AGACTGACCTTGCAAGAAGG+TGG	0.638902	6_4:-76200513	Msa0997120:intron
AGTGTAGACATGTCCAAACC+TGG	0.561902	6_4:-76200994	Msa0997120:exon
ATCTACATTGGTTTCCTCAA+AGG	0.486879	6_4:+76200726	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAAACCAAAACAAGATGGA+AGG	+	chr6_4:76200457-76200476	None:intergenic	30.0%
TTTCCTCAAAGGATTGATTA+AGG	+	chr6_4:76200631-76200650	None:intergenic	30.0%
GGATAACAATCTTTCATCAT+TGG	-	chr6_4:76200682-76200701	Msa0997120:intron	30.0%
ACTAATCTTATCCTCTCAAT+AGG	-	chr6_4:76200787-76200806	Msa0997120:intron	30.0%
GCTGCAAATATAACATGTTA+TGG	+	chr6_4:76201093-76201112	None:intergenic	30.0%
TAAAACCAAAACAAGATGGA+AGG	+	chr6_4:76200457-76200476	None:intergenic	30.0%
TTTCCTCAAAGGATTGATTA+AGG	+	chr6_4:76200631-76200650	None:intergenic	30.0%
GGATAACAATCTTTCATCAT+TGG	-	chr6_4:76200682-76200701	Msa0997120:intron	30.0%
ACTAATCTTATCCTCTCAAT+AGG	-	chr6_4:76200787-76200806	Msa0997120:intron	30.0%
GCTGCAAATATAACATGTTA+TGG	+	chr6_4:76201093-76201112	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	76200182	76201205	76200182	ID=Msa0997120;Name=Msa0997120
chr6_4	mRNA	76200182	76201205	76200182	ID=Msa0997120-mRNA-1;Parent=Msa0997120;Name=Msa0997120-mRNA-1;_AED=0.35;_eAED=0.44;_QI=198\|0.33\|0.25\|1\|0.66\|0.75\|4\|0\|104
chr6_4	exon	76200182	76200275	76200182	ID=Msa0997120-mRNA-1:exon:14339;Parent=Msa0997120-mRNA-1
chr6_4	exon	76200514	76200578	76200514	ID=Msa0997120-mRNA-1:exon:14338;Parent=Msa0997120-mRNA-1
chr6_4	exon	76200684	76200770	76200684	ID=Msa0997120-mRNA-1:exon:14337;Parent=Msa0997120-mRNA-1
chr6_4	exon	76200939	76201205	76200939	ID=Msa0997120-mRNA-1:exon:14336;Parent=Msa0997120-mRNA-1
chr6_4	five_prime_UTR	76201008	76201205	76201008	ID=Msa0997120-mRNA-1:five_prime_utr;Parent=Msa0997120-mRNA-1
chr6_4	CDS	76200939	76201007	76200939	ID=Msa0997120-mRNA-1:cds;Parent=Msa0997120-mRNA-1
chr6_4	CDS	76200684	76200770	76200684	ID=Msa0997120-mRNA-1:cds;Parent=Msa0997120-mRNA-1
chr6_4	CDS	76200514	76200578	76200514	ID=Msa0997120-mRNA-1:cds;Parent=Msa0997120-mRNA-1
chr6_4	CDS	76200182	76200275	76200182	ID=Msa0997120-mRNA-1:cds;Parent=Msa0997120-mRNA-1

Gene Sequence	>Msa0997120 ATGTCCAAACCTGGCAAAGGATATTCTGAGGGTCTCAAATCTTTTGATTCCATTTCCCTGCCTCAGGAGGTAGAAGAAAGCCTTAATCAATCCTTTGAGGAAACCAATGTAGATCAAACTGGTTTGGATGAATCGGATAACAATCTTTCATCATTGGAGAAGCTGAAAAACAGATTGAGATTTTGCAAAAGATTGTGCCAGACTGACCTTGCAAGAAGGTGCATCAAGAATGCGTCAGATTTGGACTCAGTTCGATCAAGACTTCTCAGCCATGTGACCAAAGAAGACGAGTGTAAATTGCATTGTTGCAAATGA
Protein sequence	>Msa0997120 MSKPGKGYSEGLKSFDSISLPQEVEESLNQSFEETNVDQTGLDESDNNLSSLEKLKNRLRFCKRLCQTDLARRCIKNASDLDSVRSRLLSHVTKEDECKLHCCK*