Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0927750 | XP_013453052.1 | 97.031 | 640 | 5 | 2 | 1 | 627 | 1 | 639 | 0.0 | 1271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0927750 | sp|Q9LHF5|VIL1_ARATH | 48.154 | 596 | 243 | 15 | 46 | 618 | 45 | 597 | 2.38e-172 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0927750 | Msa0927820 | 0.990903 | 6.746874e-185 | -8.615850e-47 |
| Msa0927750 | Msa0985420 | 0.876983 | 9.047788e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0927750 | MtrunA17_Chr6g0485041 | 97.031 | 640 | 5 | 2 | 1 | 627 | 1 | 639 | 0.0 | 1271 |
| Msa0927750 | MtrunA17_Chr4g0072251 | 45.253 | 316 | 146 | 5 | 21 | 311 | 109 | 422 | 4.83e-81 | 270 |
| Msa0927750 | MtrunA17_Chr4g0072251 | 60.759 | 79 | 30 | 1 | 537 | 615 | 641 | 718 | 4.42e-23 | 104 |
| Msa0927750 | MtrunA17_Chr5g0427611 | 39.590 | 293 | 164 | 4 | 47 | 327 | 139 | 430 | 1.73e-64 | 223 |
| Msa0927750 | MtrunA17_Chr5g0427611 | 57.143 | 70 | 30 | 0 | 541 | 610 | 518 | 587 | 2.23e-20 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0927750 | AT3G24440.2 | 48.148 | 594 | 244 | 14 | 46 | 618 | 45 | 595 | 8.72e-174 | 507 |
| Msa0927750 | AT3G24440.1 | 48.154 | 596 | 243 | 15 | 46 | 618 | 45 | 597 | 2.42e-173 | 506 |
| Msa0927750 | AT5G57380.2 | 43.253 | 289 | 143 | 5 | 50 | 327 | 110 | 388 | 1.45e-67 | 231 |
| Msa0927750 | AT5G57380.2 | 52.000 | 75 | 36 | 0 | 541 | 615 | 510 | 584 | 3.44e-16 | 82.8 |
| Msa0927750 | AT5G57380.1 | 43.253 | 289 | 143 | 5 | 50 | 327 | 130 | 408 | 1.68e-67 | 232 |
| Msa0927750 | AT5G57380.1 | 52.000 | 75 | 36 | 0 | 541 | 615 | 530 | 604 | 3.70e-16 | 82.4 |
| Msa0927750 | AT4G30200.1 | 39.237 | 367 | 178 | 7 | 4 | 331 | 73 | 433 | 2.89e-61 | 216 |
| Msa0927750 | AT4G30200.1 | 55.172 | 87 | 37 | 1 | 532 | 618 | 583 | 667 | 3.95e-22 | 101 |
| Msa0927750 | AT4G30200.3 | 39.237 | 367 | 178 | 7 | 4 | 331 | 90 | 450 | 3.84e-61 | 216 |
| Msa0927750 | AT4G30200.3 | 55.172 | 87 | 37 | 1 | 532 | 618 | 600 | 684 | 3.95e-22 | 101 |
| Msa0927750 | AT4G30200.4 | 37.995 | 379 | 178 | 7 | 4 | 331 | 90 | 462 | 2.92e-60 | 212 |
| Msa0927750 | AT4G30200.2 | 37.995 | 379 | 178 | 7 | 4 | 331 | 90 | 462 | 2.66e-59 | 211 |
| Msa0927750 | AT4G30200.2 | 55.172 | 87 | 37 | 1 | 532 | 618 | 612 | 696 | 4.03e-22 | 101 |
| Msa0927750 | AT2G18880.1 | 38.225 | 293 | 169 | 6 | 50 | 331 | 119 | 410 | 5.58e-51 | 185 |
| Msa0927750 | AT2G18880.1 | 50.667 | 75 | 37 | 0 | 544 | 618 | 440 | 514 | 7.10e-17 | 84.3 |
| Msa0927750 | AT2G18870.1 | 51.648 | 91 | 41 | 1 | 526 | 613 | 123 | 213 | 1.06e-18 | 86.3 |
Find 172 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTTCCAACCTTTGGATTC+TGG | 0.204447 | 6_2:-72259418 | None:intergenic |
| AAAATCCTCCTCTGATCTTT+TGG | 0.225978 | 6_2:-72260014 | None:intergenic |
| CGTAACTTCTGAGGACATTA+AGG | 0.258985 | 6_2:+72259926 | Msa0927750:CDS |
| CACCAAAAGCGTTGAGATAT+TGG | 0.279016 | 6_2:+72260130 | Msa0927750:CDS |
| TACCAATATCTCAACGCTTT+TGG | 0.280459 | 6_2:-72260132 | None:intergenic |
| TAAAGGAGAACCGTTTATTA+AGG | 0.300683 | 6_2:-72260723 | None:intergenic |
| ATAGGATATATTTGAGCTTC+AGG | 0.301437 | 6_2:+72259185 | Msa0927750:CDS |
| TTCGTTTGGTCTCCAGGTTT+CGG | 0.314155 | 6_2:-72260609 | None:intergenic |
| CCTACAGAATGTGTCGTCTT+TGG | 0.328733 | 6_2:-72258023 | None:intergenic |
| AACTTCTTCGTTTGGTCTCC+AGG | 0.330854 | 6_2:-72260615 | None:intergenic |
| CAGGATGACTGAAAAGAAAA+AGG | 0.333304 | 6_2:+72257841 | Msa0927750:exon |
| TCCATTTCTTGCCCTCTTGT+TGG | 0.338773 | 6_2:-72260984 | None:intergenic |
| ACAAGAGGCAAAGGCTAAAC+TGG | 0.339079 | 6_2:+72259252 | Msa0927750:CDS |
| GCCTCCTGCGGTAAAGTTAC+TGG | 0.341604 | 6_2:+72258235 | Msa0927750:CDS |
| ATACTCAAAGTTCTCATCTA+AGG | 0.365083 | 6_2:-72260768 | None:intergenic |
| GGAAGAGCGATCGGTGCATT+TGG | 0.365367 | 6_2:+72260400 | Msa0927750:CDS |
| AATTGACATGAATGCTAAAC+AGG | 0.369248 | 6_2:+72260172 | Msa0927750:CDS |
| ATAACAAGGATCCTAGTCTT+TGG | 0.376232 | 6_2:+72258080 | Msa0927750:CDS |
| AATTCGTTGGCTAGAATGTC+AGG | 0.388611 | 6_2:+72260802 | Msa0927750:CDS |
| GATGAAGAGCACATTCAATA+TGG | 0.388919 | 6_2:-72258150 | None:intergenic |
| CAAGAACAAGGCTGCCTTGA+GGG | 0.391006 | 6_2:+72260314 | Msa0927750:CDS |
| CAGTGAACCGGGCTCCAAAC+TGG | 0.396392 | 6_2:+72260217 | Msa0927750:CDS |
| TGAGGGATCGATCTCCAGTT+TGG | 0.400477 | 6_2:-72260231 | None:intergenic |
| CACTTTGCAGCAGGCTGTTG+AGG | 0.405269 | 6_2:+72260520 | Msa0927750:CDS |
| GCAGGTGGTACAAATCGAAT+AGG | 0.405556 | 6_2:-72257929 | None:intergenic |
| ACAGCAGGAACTTCTTCGTT+TGG | 0.411595 | 6_2:-72260623 | None:intergenic |
| GATCGATGATCCGAGTAGTT+TGG | 0.412460 | 6_2:+72260925 | Msa0927750:CDS |
| AACTGGAGGAGGCAGTGAAC+CGG | 0.415572 | 6_2:+72260205 | Msa0927750:CDS |
| TGCTTACATGGTTTAGTTTG+AGG | 0.422999 | 6_2:+72260855 | Msa0927750:CDS |
| GTAACTTCTGAGGACATTAA+GGG | 0.426701 | 6_2:+72259927 | Msa0927750:CDS |
| GCTGATCCTCCTTCTGATTA+CGG | 0.427415 | 6_2:+72257950 | Msa0927750:CDS |
| AAACAGGATGATACTGAAAC+TGG | 0.428677 | 6_2:+72260188 | Msa0927750:CDS |
| GCTTACATGGTTTAGTTTGA+GGG | 0.431261 | 6_2:+72260856 | Msa0927750:CDS |
| TTCTGCACATCACTGGCAAT+AGG | 0.433169 | 6_2:-72259340 | None:intergenic |
| AAATGCACCGATCGCTCTTC+CGG | 0.433270 | 6_2:-72260398 | None:intergenic |
| GAAACAACAAGCAATTGATA+AGG | 0.439096 | 6_2:-72257662 | None:intergenic |
| TTCTGAAGTCCGGTCGGAAA+AGG | 0.439812 | 6_2:+72257768 | Msa0927750:five_prime_UTR |
| AAGGTCTCGAACCTTGAATC+CGG | 0.441293 | 6_2:-72260264 | None:intergenic |
| AATGACTTACCCCGGATTCA+AGG | 0.443418 | 6_2:+72260253 | Msa0927750:CDS |
| TCCAACAAGAGGGCAAGAAA+TGG | 0.444776 | 6_2:+72260983 | Msa0927750:CDS |
| TTGGAAGAACCACCGTCAAC+AGG | 0.444884 | 6_2:-72259289 | None:intergenic |
| GTGCTTGTCTTTATCAAAGC+AGG | 0.449057 | 6_2:-72257803 | None:intergenic |
| TGTGACAGCACCTTAATAAA+CGG | 0.450247 | 6_2:+72260713 | Msa0927750:CDS |
| ACATTAAGGGATTCAAACTA+TGG | 0.453105 | 6_2:+72259940 | Msa0927750:CDS |
| TCTGCACATCACTGGCAATA+GGG | 0.453195 | 6_2:-72259339 | None:intergenic |
| GACAATGCCACGTACCATCT+TGG | 0.453446 | 6_2:-72259308 | None:intergenic |
| ATTGTATCTTATACAGATGT+TGG | 0.454036 | 6_2:+72260077 | Msa0927750:CDS |
| AAGAATATTCTGTGCAAGGC+TGG | 0.454526 | 6_2:-72260049 | None:intergenic |
| GGATTCAAGGTTCGAGACCT+TGG | 0.456764 | 6_2:+72260266 | Msa0927750:CDS |
| CGCTACCATGTGGTCTTGCT+AGG | 0.457631 | 6_2:-72260580 | None:intergenic |
| GTGAGTTCTTCGTTCAAGTC+AGG | 0.459213 | 6_2:-72260458 | None:intergenic |
| CAATGGTTGCACTTTGCAGC+AGG | 0.460748 | 6_2:+72260511 | Msa0927750:CDS |
| ATGTCCTCAGAAGTTACGTT+TGG | 0.462457 | 6_2:-72259921 | None:intergenic |
| TTAGGCTGAAATTGCTTACA+TGG | 0.463255 | 6_2:+72260843 | Msa0927750:CDS |
| GTGTGGATGTACTATGCTAT+AGG | 0.467184 | 6_2:+72259167 | Msa0927750:CDS |
| GGCAAAGGCTAAACTGGAAA+AGG | 0.469157 | 6_2:+72259258 | Msa0927750:CDS |
| CTTCATAAGTTTCTGAAGTC+CGG | 0.469377 | 6_2:+72257758 | Msa0927750:five_prime_UTR |
| GTCATATGAAGAAAGAGTTT+AGG | 0.474263 | 6_2:+72260825 | Msa0927750:CDS |
| GTAGCGGTGGTTCCGAAACC+TGG | 0.474866 | 6_2:+72260597 | Msa0927750:CDS |
| AAACAACAAGCAATTGATAA+GGG | 0.477002 | 6_2:-72257661 | None:intergenic |
| AAAGTTGGAGTTGTTGATCA+TGG | 0.477180 | 6_2:+72258178 | Msa0927750:CDS |
| AGTGCTTTGAACATGAGAAC+TGG | 0.484299 | 6_2:-72257688 | None:intergenic |
| TCGATCTCCAGTTTGGAGCC+CGG | 0.491441 | 6_2:-72260224 | None:intergenic |
| AACGATCAAGCCTAGCCATC+CGG | 0.494565 | 6_2:+72260379 | Msa0927750:CDS |
| TGGTACGTGGCATTGTCAGC+AGG | 0.498805 | 6_2:+72259314 | Msa0927750:CDS |
| ATTACGGACATTCAAACTCC+TGG | 0.498965 | 6_2:+72257966 | Msa0927750:CDS |
| GGACAGCTGATGCAACTTGA+TGG | 0.502049 | 6_2:+72258199 | Msa0927750:CDS |
| TGAGCACTGATTGCCGAGGC+CGG | 0.504332 | 6_2:-72257879 | None:intergenic |
| GCACATTTCTTCAGAAAAGC+AGG | 0.504952 | 6_2:+72257822 | Msa0927750:five_prime_UTR |
| GATCGCTCTTCCGGATGGCT+AGG | 0.507299 | 6_2:-72260389 | None:intergenic |
| GGTAAAGTTACTGGAATACT+TGG | 0.508656 | 6_2:+72258244 | Msa0927750:CDS |
| GAACCATCGGGTGCATGTAA+AGG | 0.509944 | 6_2:-72260740 | None:intergenic |
| AGGTCTCGAACCTTGAATCC+GGG | 0.512295 | 6_2:-72260263 | None:intergenic |
| AAGGAAGTTGGTCCTGTTGA+CGG | 0.515182 | 6_2:+72259277 | Msa0927750:CDS |
| CTCAAGGAAGCAACTTCGCA+AGG | 0.519076 | 6_2:+72257898 | Msa0927750:CDS |
| TAAATATAGCGAAAGATGCT+CGG | 0.525599 | 6_2:+72259143 | Msa0927750:CDS |
| ACTATGGTATTACAAGACTA+GGG | 0.525868 | 6_2:+72259956 | Msa0927750:CDS |
| AGCGAAAGATGCTCGGCGTG+TGG | 0.526435 | 6_2:+72259150 | Msa0927750:CDS |
| CAGGTGGTACAAATCGAATA+GGG | 0.533496 | 6_2:-72257928 | None:intergenic |
| TGGATTCAATAACAAGGTTG+TGG | 0.533711 | 6_2:+72261003 | Msa0927750:CDS |
| CAGAAACAACATTCAGATCA+AGG | 0.533858 | 6_2:-72260433 | None:intergenic |
| TCTAAGGAGAACGAACCATC+GGG | 0.533883 | 6_2:-72260752 | None:intergenic |
| CATCAGCTTTCTCAATAGCA+AGG | 0.536745 | 6_2:-72259372 | None:intergenic |
| ACAGAGTTTCTGCACATCAC+TGG | 0.537538 | 6_2:-72259347 | None:intergenic |
| TAATCAGAAGGAGGATCAGC+AGG | 0.538096 | 6_2:-72257947 | None:intergenic |
| GCCTCGGCAATCAGTGCTCA+AGG | 0.540279 | 6_2:+72257882 | Msa0927750:CDS |
| CGAAAAGAATATTCTGTGCA+AGG | 0.542417 | 6_2:-72260053 | None:intergenic |
| CTATTGAGAAAGCTGATGAA+TGG | 0.543260 | 6_2:+72259377 | Msa0927750:CDS |
| TATACAGATGTTGGCGACCA+TGG | 0.544516 | 6_2:+72260086 | Msa0927750:CDS |
| CCATCTCTTCGATGATAACA+AGG | 0.545578 | 6_2:+72258066 | Msa0927750:CDS |
| CAAGGATCCTAGTCTTTGGT+TGG | 0.547359 | 6_2:+72258084 | Msa0927750:CDS |
| ATTGTGTTAAAGTAATTCGT+TGG | 0.547857 | 6_2:+72260789 | Msa0927750:CDS |
| CTTGCTTGGGCTCAAGAACA+AGG | 0.549129 | 6_2:+72260302 | Msa0927750:CDS |
| GCTAAACTGGAAAAGGAAGT+TGG | 0.550877 | 6_2:+72259265 | Msa0927750:CDS |
| CTGCATACCAACCAAAGACT+AGG | 0.554285 | 6_2:-72258091 | None:intergenic |
| ATGGTTTAGTTTGAGGGCAA+CGG | 0.555090 | 6_2:+72260862 | Msa0927750:CDS |
| TCATCCCGAGAAGACTCAAA+AGG | 0.555122 | 6_2:-72260485 | None:intergenic |
| TTCTCATGTTCAAAGCACTC+TGG | 0.555151 | 6_2:+72257692 | Msa0927750:five_prime_UTR |
| AACTATGGTATTACAAGACT+AGG | 0.555562 | 6_2:+72259955 | Msa0927750:CDS |
| ACTGGAGGAGGCAGTGAACC+GGG | 0.555883 | 6_2:+72260206 | Msa0927750:CDS |
| GGATTCTGGATTGTCATCAG+TGG | 0.556540 | 6_2:-72259404 | None:intergenic |
| GATGATCCGAGTAGTTTGGC+AGG | 0.560501 | 6_2:+72260929 | Msa0927750:CDS |
| CTGATATTATATCCAACAAG+AGG | 0.561241 | 6_2:+72260972 | Msa0927750:CDS |
| AATCCGGGGTAAGTCATTGA+GGG | 0.561658 | 6_2:-72260248 | None:intergenic |
| CTTGTTCTTGAGCCCAAGCA+AGG | 0.563534 | 6_2:-72260301 | None:intergenic |
| TATTCCAGTAACTTTACCGC+AGG | 0.566806 | 6_2:-72258239 | None:intergenic |
| GAATCCGGGGTAAGTCATTG+AGG | 0.567382 | 6_2:-72260249 | None:intergenic |
| ATCTAAGGAGAACGAACCAT+CGG | 0.568116 | 6_2:-72260753 | None:intergenic |
| AGTTGACCTGCCAAACTACT+CGG | 0.568871 | 6_2:-72260935 | None:intergenic |
| TCCAGTAACTTTACCGCAGG+AGG | 0.569932 | 6_2:-72258236 | None:intergenic |
| CCTTGTTATCATCGAAGAGA+TGG | 0.571222 | 6_2:-72258066 | None:intergenic |
| ATCAGCTTTCTCAATAGCAA+GGG | 0.571702 | 6_2:-72259371 | None:intergenic |
| AAGAACAAGGCTGCCTTGAG+GGG | 0.571814 | 6_2:+72260315 | Msa0927750:CDS |
| TAGCCATCCGGAAGAGCGAT+CGG | 0.577859 | 6_2:+72260391 | Msa0927750:CDS |
| GTATGCAGTGAATCTTCTCA+AGG | 0.582388 | 6_2:+72258106 | Msa0927750:CDS |
| GGCAACGGAACAAGAGCGTA+GGG | 0.584349 | 6_2:+72260877 | Msa0927750:CDS |
| GTGTGTTTCCAAAAGATCAG+AGG | 0.586881 | 6_2:+72260006 | Msa0927750:CDS |
| TGACATGGTACAAGAGGCAA+AGG | 0.592745 | 6_2:+72259243 | Msa0927750:CDS |
| TGACGGTGGTTCTTCCAAGA+TGG | 0.594589 | 6_2:+72259294 | Msa0927750:CDS |
| GTTGACTCCCGCATAGTCGT+AGG | 0.596566 | 6_2:+72260644 | Msa0927750:CDS |
| TCTCCTTTACATGCACCCGA+TGG | 0.598572 | 6_2:+72260737 | Msa0927750:CDS |
| TTCATGTCAATTGATGAAGT+CGG | 0.599447 | 6_2:-72260161 | None:intergenic |
| TCTTCTCAAGGGGACTCATG+TGG | 0.600895 | 6_2:+72258118 | Msa0927750:CDS |
| TGAGAAAGCTGATGAATGGT+TGG | 0.603762 | 6_2:+72259381 | Msa0927750:CDS |
| CGGACTTCAGAAACTTATGA+AGG | 0.607463 | 6_2:-72257757 | None:intergenic |
| CAAGGAAGCAACTTCGCAAG+GGG | 0.609915 | 6_2:+72257900 | Msa0927750:CDS |
| CAAGGTGCAAAATCTTTCCA+AGG | 0.610341 | 6_2:-72260283 | None:intergenic |
| TCAAGGAAGCAACTTCGCAA+GGG | 0.610831 | 6_2:+72257899 | Msa0927750:CDS |
| TCCTTGAGCACTGATTGCCG+AGG | 0.613500 | 6_2:-72257883 | None:intergenic |
| GGGCAACGGAACAAGAGCGT+AGG | 0.614096 | 6_2:+72260876 | Msa0927750:CDS |
| ATTGCATGACATGGTACAAG+AGG | 0.616726 | 6_2:+72259237 | Msa0927750:CDS |
| TGTTTCCAAAAGATCAGAGG+AGG | 0.617266 | 6_2:+72260009 | Msa0927750:CDS |
| AATGCCAAACGTAACTTCTG+AGG | 0.620213 | 6_2:+72259917 | Msa0927750:CDS |
| TTTGAATGTCCGTAATCAGA+AGG | 0.621485 | 6_2:-72257959 | None:intergenic |
| TGATATTATATCCAACAAGA+GGG | 0.623788 | 6_2:+72260973 | Msa0927750:CDS |
| ACTATGCGGGAGTCAACAGC+AGG | 0.624903 | 6_2:-72260638 | None:intergenic |
| TATGCAGTGAATCTTCTCAA+GGG | 0.633109 | 6_2:+72258107 | Msa0927750:CDS |
| TTGAGCTTCAGGCTTCTGAA+CGG | 0.633588 | 6_2:+72259196 | Msa0927750:CDS |
| GTAAAGTTACTGGAATACTT+GGG | 0.634259 | 6_2:+72258245 | Msa0927750:CDS |
| ACTTGCACCTACGACTATGC+GGG | 0.634727 | 6_2:-72260651 | None:intergenic |
| CTAGCAAGACCACATGGTAG+CGG | 0.635274 | 6_2:+72260581 | Msa0927750:CDS |
| ATAAGTTTCTGAAGTCCGGT+CGG | 0.635908 | 6_2:+72257762 | Msa0927750:five_prime_UTR |
| GCATAGTCGTAGGTGCAAGT+AGG | 0.636726 | 6_2:+72260654 | Msa0927750:CDS |
| CCAAAGACGACACATTCTGT+AGG | 0.639129 | 6_2:+72258023 | Msa0927750:CDS |
| AAGACGACACATTCTGTAGG+AGG | 0.639361 | 6_2:+72258026 | Msa0927750:CDS |
| ATGCAGTGAATCTTCTCAAG+GGG | 0.641363 | 6_2:+72258108 | Msa0927750:CDS |
| TCAAGAACAAGGCTGCCTTG+AGG | 0.643311 | 6_2:+72260313 | Msa0927750:CDS |
| AATATTCTGTGCAAGGCTGG+AGG | 0.643828 | 6_2:-72260046 | None:intergenic |
| ATTTAAAGAATTGCATGACA+TGG | 0.644214 | 6_2:+72259228 | Msa0927750:CDS |
| GGTCTCGAACCTTGAATCCG+GGG | 0.645521 | 6_2:-72260262 | None:intergenic |
| GATGATACTGAAACTGGAGG+AGG | 0.647232 | 6_2:+72260194 | Msa0927750:CDS |
| GCAAGACCACATGGTAGCGG+TGG | 0.655229 | 6_2:+72260584 | Msa0927750:CDS |
| GATCCCTCAATGACTTACCC+CGG | 0.655434 | 6_2:+72260245 | Msa0927750:CDS |
| GGTTATTGTTGTGCCTCCTG+CGG | 0.655592 | 6_2:+72258223 | Msa0927750:CDS |
| GATGACAATCCAGAATCCAA+AGG | 0.656967 | 6_2:+72259409 | Msa0927750:CDS |
| GAAGTTGGTCCTGTTGACGG+TGG | 0.657973 | 6_2:+72259280 | Msa0927750:CDS |
| TGGCGACCATGGTCATTCTG+AGG | 0.659046 | 6_2:+72260097 | Msa0927750:CDS |
| GGTTCTTCCAAGATGGTACG+TGG | 0.663592 | 6_2:+72259301 | Msa0927750:CDS |
| TCCCGAGAAGACTCAAAAGG+AGG | 0.665620 | 6_2:-72260482 | None:intergenic |
| GAATGTCCGTAATCAGAAGG+AGG | 0.666170 | 6_2:-72257956 | None:intergenic |
| TACTTGCACCTACGACTATG+CGG | 0.668138 | 6_2:-72260652 | None:intergenic |
| CAGGATGATACTGAAACTGG+AGG | 0.670490 | 6_2:+72260191 | Msa0927750:CDS |
| ATTCGTTGGCTAGAATGTCA+GGG | 0.682204 | 6_2:+72260803 | Msa0927750:CDS |
| AAGAAATGGATTCAATAACA+AGG | 0.687617 | 6_2:+72260997 | Msa0927750:CDS |
| TCTTCTCGGGATGAAGACAA+TGG | 0.691060 | 6_2:+72260494 | Msa0927750:CDS |
| TCGGAACCACCGCTACCATG+TGG | 0.691197 | 6_2:-72260590 | None:intergenic |
| CTATGGTATTACAAGACTAG+GGG | 0.692533 | 6_2:+72259957 | Msa0927750:CDS |
| TCAGAAGGAGGATCAGCAGG+TGG | 0.694739 | 6_2:-72257944 | None:intergenic |
| ACTTAGCCTCAGAATGACCA+TGG | 0.702405 | 6_2:-72260103 | None:intergenic |
| CAGCTGATGCAACTTGATGG+TGG | 0.702578 | 6_2:+72258202 | Msa0927750:CDS |
| AAGGAAGCAACTTCGCAAGG+GGG | 0.703361 | 6_2:+72257901 | Msa0927750:CDS |
| AACGGAACAAGAGCGTAGGG+TGG | 0.711248 | 6_2:+72260880 | Msa0927750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAAAAAACTTTTTTTTATT+GGG | - | chr6_2:72258569-72258588 | None:intergenic | 10.0% |
| !!! | AAGAAAAAACTTTTTTTTAT+TGG | - | chr6_2:72258570-72258589 | None:intergenic | 10.0% |
| !! | TGTAGAAATAAAAAAAATTA+GGG | + | chr6_2:72258875-72258894 | Msa0927750:intron | 10.0% |
| !!! | GAAAAAACTTTTTTTTATTG+GGG | - | chr6_2:72258568-72258587 | None:intergenic | 15.0% |
| !!! | CTTTTTTCAGAAATAATAAT+AGG | + | chr6_2:72258593-72258612 | Msa0927750:intron | 15.0% |
| !! | CTGTAGAAATAAAAAAAATT+AGG | + | chr6_2:72258874-72258893 | Msa0927750:intron | 15.0% |
| !! | GTAGAAATAAAAAAAATTAG+GGG | + | chr6_2:72258876-72258895 | Msa0927750:intron | 15.0% |
| !!! | ATTTAGAACTTGATTTTTAT+CGG | + | chr6_2:72259068-72259087 | Msa0927750:intron | 15.0% |
| !! | TTAAAATCATCTGTAAAAAA+AGG | - | chr6_2:72259635-72259654 | None:intergenic | 15.0% |
| !!! | TTTTTTATTTCTACAGTTCA+GGG | - | chr6_2:72258870-72258889 | None:intergenic | 20.0% |
| !!! | TTTTTTTATTTCTACAGTTC+AGG | - | chr6_2:72258871-72258890 | None:intergenic | 20.0% |
| !! | TTTAATAAAATTACAGAAGC+TGG | + | chr6_2:72259110-72259129 | Msa0927750:intron | 20.0% |
| !!! | TTTGTTTTACTAACCATTAA+AGG | + | chr6_2:72259476-72259495 | Msa0927750:intron | 20.0% |
| !!! | TTGTTTTACTAACCATTAAA+GGG | + | chr6_2:72259477-72259496 | Msa0927750:intron | 20.0% |
| !!! | AAAAAATGTGATTTTCACTA+CGG | + | chr6_2:72259654-72259673 | Msa0927750:intron | 20.0% |
| !!! | GAGTTCTAAATTTGATTTAT+CGG | + | chr6_2:72259783-72259802 | Msa0927750:intron | 20.0% |
| ! | AAACAACAAGCAATTGATAA+GGG | - | chr6_2:72257664-72257683 | None:intergenic | 25.0% |
| !! | TATATTTTATTGGAAGCCTA+AGG | + | chr6_2:72258531-72258550 | Msa0927750:intron | 25.0% |
| ! | ATTTAAAGAATTGCATGACA+TGG | + | chr6_2:72259228-72259247 | Msa0927750:CDS | 25.0% |
| ! | AGAAAAAAGCTATAACAAAC+AGG | - | chr6_2:72259503-72259522 | None:intergenic | 25.0% |
| ! | ATTGTATCTTATACAGATGT+TGG | + | chr6_2:72260077-72260096 | Msa0927750:CDS | 25.0% |
| ! | ATTGTGTTAAAGTAATTCGT+TGG | + | chr6_2:72260789-72260808 | Msa0927750:CDS | 25.0% |
| ! | TGATATTATATCCAACAAGA+GGG | + | chr6_2:72260973-72260992 | Msa0927750:CDS | 25.0% |
| !! | AAGAAATGGATTCAATAACA+AGG | + | chr6_2:72260997-72261016 | Msa0927750:CDS | 25.0% |
| GAAACAACAAGCAATTGATA+AGG | - | chr6_2:72257665-72257684 | None:intergenic | 30.0% | |
| GTAAAGTTACTGGAATACTT+GGG | + | chr6_2:72258245-72258264 | Msa0927750:CDS | 30.0% | |
| ! | TTTCTGTGTTTCTACCATTA+AGG | + | chr6_2:72258370-72258389 | Msa0927750:intron | 30.0% |
| ! | ATAAAATATAGAGCGCTTCA+CGG | - | chr6_2:72258521-72258540 | None:intergenic | 30.0% |
| !! | TGAAGCGCTCTATATTTTAT+TGG | + | chr6_2:72258521-72258540 | Msa0927750:intron | 30.0% |
| !!! | TTTTTTTTATTGGGGTACCA+TGG | - | chr6_2:72258560-72258579 | None:intergenic | 30.0% |
| AAAAGGAAACATAAGACTGA+GGG | - | chr6_2:72258633-72258652 | None:intergenic | 30.0% | |
| ! | TGATTTTTATCGGATGACAT+TGG | + | chr6_2:72259078-72259097 | Msa0927750:intron | 30.0% |
| TAAATATAGCGAAAGATGCT+CGG | + | chr6_2:72259143-72259162 | Msa0927750:CDS | 30.0% | |
| ATAGGATATATTTGAGCTTC+AGG | + | chr6_2:72259185-72259204 | Msa0927750:CDS | 30.0% | |
| ! | TTAACATGATAAGCTCCTTT+TGG | + | chr6_2:72259811-72259830 | Msa0927750:intron | 30.0% |
| ACATTAAGGGATTCAAACTA+TGG | + | chr6_2:72259940-72259959 | Msa0927750:CDS | 30.0% | |
| AACTATGGTATTACAAGACT+AGG | + | chr6_2:72259955-72259974 | Msa0927750:CDS | 30.0% | |
| ACTATGGTATTACAAGACTA+GGG | + | chr6_2:72259956-72259975 | Msa0927750:CDS | 30.0% | |
| ! | CTTGCACAGAATATTCTTTT+CGG | + | chr6_2:72260054-72260073 | Msa0927750:CDS | 30.0% |
| TTCATGTCAATTGATGAAGT+CGG | - | chr6_2:72260164-72260183 | None:intergenic | 30.0% | |
| AATTGACATGAATGCTAAAC+AGG | + | chr6_2:72260172-72260191 | Msa0927750:CDS | 30.0% | |
| !!! | ACCACAGCAATTTTTTGTAT+CGG | - | chr6_2:72260351-72260370 | None:intergenic | 30.0% |
| ! | GTTTTTCTCTAAATCATGAG+AGG | - | chr6_2:72260561-72260580 | None:intergenic | 30.0% |
| TAAAGGAGAACCGTTTATTA+AGG | - | chr6_2:72260726-72260745 | None:intergenic | 30.0% | |
| ATACTCAAAGTTCTCATCTA+AGG | - | chr6_2:72260771-72260790 | None:intergenic | 30.0% | |
| GTCATATGAAGAAAGAGTTT+AGG | + | chr6_2:72260825-72260844 | Msa0927750:CDS | 30.0% | |
| CTGATATTATATCCAACAAG+AGG | + | chr6_2:72260972-72260991 | Msa0927750:CDS | 30.0% | |
| ! | TCAAAGCACTCTGGAAAAAA+TGG | + | chr6_2:72257701-72257720 | Msa0927750:five_prime_UTR | 35.0% |
| !! | CTTCATAAGTTTCTGAAGTC+CGG | + | chr6_2:72257758-72257777 | Msa0927750:five_prime_UTR | 35.0% |
| CAGGATGACTGAAAAGAAAA+AGG | + | chr6_2:72257841-72257860 | Msa0927750:exon | 35.0% | |
| AAGGACTCGAAAAAAGTTTC+CGG | + | chr6_2:72257860-72257879 | Msa0927750:CDS | 35.0% | |
| TTTGAATGTCCGTAATCAGA+AGG | - | chr6_2:72257962-72257981 | None:intergenic | 35.0% | |
| ! | ATAACAAGGATCCTAGTCTT+TGG | + | chr6_2:72258080-72258099 | Msa0927750:CDS | 35.0% |
| TATGCAGTGAATCTTCTCAA+GGG | + | chr6_2:72258107-72258126 | Msa0927750:CDS | 35.0% | |
| ! | GATGAAGAGCACATTCAATA+TGG | - | chr6_2:72258153-72258172 | None:intergenic | 35.0% |
| GCTCTTCATCATGAAAAAGT+TGG | + | chr6_2:72258163-72258182 | Msa0927750:CDS | 35.0% | |
| AAAGTTGGAGTTGTTGATCA+TGG | + | chr6_2:72258178-72258197 | Msa0927750:CDS | 35.0% | |
| GGTAAAGTTACTGGAATACT+TGG | + | chr6_2:72258244-72258263 | Msa0927750:CDS | 35.0% | |
| AACAGCAAACAACAATAAGG+GGG | - | chr6_2:72258324-72258343 | None:intergenic | 35.0% | |
| CAACAGCAAACAACAATAAG+GGG | - | chr6_2:72258325-72258344 | None:intergenic | 35.0% | |
| CCAACAGCAAACAACAATAA+GGG | - | chr6_2:72258326-72258345 | None:intergenic | 35.0% | |
| ACCAACAGCAAACAACAATA+AGG | - | chr6_2:72258327-72258346 | None:intergenic | 35.0% | |
| TCACATGTATCGTTCCTTAA+TGG | - | chr6_2:72258387-72258406 | None:intergenic | 35.0% | |
| TTGAGACAACATACATCAAC+TGG | - | chr6_2:72258440-72258459 | None:intergenic | 35.0% | |
| ! | TAAAATATAGAGCGCTTCAC+GGG | - | chr6_2:72258520-72258539 | None:intergenic | 35.0% |
| GAAAAGGAAACATAAGACTG+AGG | - | chr6_2:72258634-72258653 | None:intergenic | 35.0% | |
| ACGTTGTAGGTGAAATTGAT+TGG | + | chr6_2:72258909-72258928 | Msa0927750:intron | 35.0% | |
| CGTTGTAGGTGAAATTGATT+GGG | + | chr6_2:72258910-72258929 | Msa0927750:intron | 35.0% | |
| TCAAACAGAAACAGAAAGGA+AGG | - | chr6_2:72258963-72258982 | None:intergenic | 35.0% | |
| GAACTCAAACAGAAACAGAA+AGG | - | chr6_2:72258967-72258986 | None:intergenic | 35.0% | |
| ! | CTGTTTGAGTTCTTCTTTCT+TGG | + | chr6_2:72258975-72258994 | Msa0927750:intron | 35.0% |
| ATCAGCTTTCTCAATAGCAA+GGG | - | chr6_2:72259374-72259393 | None:intergenic | 35.0% | |
| CTATTGAGAAAGCTGATGAA+TGG | + | chr6_2:72259377-72259396 | Msa0927750:CDS | 35.0% | |
| AGAGAAATAGTTCCAACCTT+TGG | - | chr6_2:72259428-72259447 | None:intergenic | 35.0% | |
| TAACACACACACATCAGAAA+AGG | - | chr6_2:72259451-72259470 | None:intergenic | 35.0% | |
| ATAACAAACAGGCCCTTTAA+TGG | - | chr6_2:72259492-72259511 | None:intergenic | 35.0% | |
| ! | AACTGCTTTGCATTTGAAAC+AGG | - | chr6_2:72259590-72259609 | None:intergenic | 35.0% |
| ! | GTAACTTCTGAGGACATTAA+GGG | + | chr6_2:72259927-72259946 | Msa0927750:CDS | 35.0% |
| CTATGGTATTACAAGACTAG+GGG | + | chr6_2:72259957-72259976 | Msa0927750:CDS | 35.0% | |
| !! | TCTTTTGGAAACACACAAAC+AGG | - | chr6_2:72260002-72260021 | None:intergenic | 35.0% |
| ! | AAAATCCTCCTCTGATCTTT+TGG | - | chr6_2:72260017-72260036 | None:intergenic | 35.0% |
| CGAAAAGAATATTCTGTGCA+AGG | - | chr6_2:72260056-72260075 | None:intergenic | 35.0% | |
| ! | TACCAATATCTCAACGCTTT+TGG | - | chr6_2:72260135-72260154 | None:intergenic | 35.0% |
| AAACAGGATGATACTGAAAC+TGG | + | chr6_2:72260188-72260207 | Msa0927750:CDS | 35.0% | |
| ! | AAAGATTTTGCACCTTGCTT+GGG | + | chr6_2:72260289-72260308 | Msa0927750:CDS | 35.0% |
| !!! | AGCAATTTTTTGTATCGGCA+CGG | - | chr6_2:72260346-72260365 | None:intergenic | 35.0% |
| CAGAAACAACATTCAGATCA+AGG | - | chr6_2:72260436-72260455 | None:intergenic | 35.0% | |
| TGTGACAGCACCTTAATAAA+CGG | + | chr6_2:72260713-72260732 | Msa0927750:CDS | 35.0% | |
| TTAGGCTGAAATTGCTTACA+TGG | + | chr6_2:72260843-72260862 | Msa0927750:CDS | 35.0% | |
| !! | TGCTTACATGGTTTAGTTTG+AGG | + | chr6_2:72260855-72260874 | Msa0927750:CDS | 35.0% |
| !! | GCTTACATGGTTTAGTTTGA+GGG | + | chr6_2:72260856-72260875 | Msa0927750:CDS | 35.0% |
| TGGATTCAATAACAAGGTTG+TGG | + | chr6_2:72261003-72261022 | Msa0927750:CDS | 35.0% | |
| ! | AGTGCTTTGAACATGAGAAC+TGG | - | chr6_2:72257691-72257710 | None:intergenic | 40.0% |
| ! | TTCTCATGTTCAAAGCACTC+TGG | + | chr6_2:72257692-72257711 | Msa0927750:five_prime_UTR | 40.0% |
| CGGACTTCAGAAACTTATGA+AGG | - | chr6_2:72257760-72257779 | None:intergenic | 40.0% | |
| !! | ATAAGTTTCTGAAGTCCGGT+CGG | + | chr6_2:72257762-72257781 | Msa0927750:five_prime_UTR | 40.0% |
| GTGCTTGTCTTTATCAAAGC+AGG | - | chr6_2:72257806-72257825 | None:intergenic | 40.0% | |
| GCACATTTCTTCAGAAAAGC+AGG | + | chr6_2:72257822-72257841 | Msa0927750:five_prime_UTR | 40.0% | |
| CAGGTGGTACAAATCGAATA+GGG | - | chr6_2:72257931-72257950 | None:intergenic | 40.0% | |
| ATTACGGACATTCAAACTCC+TGG | + | chr6_2:72257966-72257985 | Msa0927750:CDS | 40.0% | |
| ! | AGCAGAGTTTTTACAGATCC+AGG | - | chr6_2:72257987-72258006 | None:intergenic | 40.0% |
| ! | CCTTGTTATCATCGAAGAGA+TGG | - | chr6_2:72258069-72258088 | None:intergenic | 40.0% |
| CCATCTCTTCGATGATAACA+AGG | + | chr6_2:72258066-72258085 | Msa0927750:CDS | 40.0% | |
| GTATGCAGTGAATCTTCTCA+AGG | + | chr6_2:72258106-72258125 | Msa0927750:CDS | 40.0% | |
| ATGCAGTGAATCTTCTCAAG+GGG | + | chr6_2:72258108-72258127 | Msa0927750:CDS | 40.0% | |
| TATTCCAGTAACTTTACCGC+AGG | - | chr6_2:72258242-72258261 | None:intergenic | 40.0% | |
| TTTCTTCACCTGCTGTGTTA+TGG | + | chr6_2:72258276-72258295 | Msa0927750:intron | 40.0% | |
| TACAACATCCATAACACAGC+AGG | - | chr6_2:72258287-72258306 | None:intergenic | 40.0% | |
| !! | CCCTTATTGTTGTTTGCTGT+TGG | + | chr6_2:72258323-72258342 | Msa0927750:intron | 40.0% |
| TGTTGGTATAGTGACGCTTT+CGG | + | chr6_2:72258340-72258359 | Msa0927750:intron | 40.0% | |
| GATACATGTGAGTCGTATCT+AGG | + | chr6_2:72258396-72258415 | Msa0927750:intron | 40.0% | |
| AAACCTGTTAGAGACTGAGA+AGG | - | chr6_2:72258765-72258784 | None:intergenic | 40.0% | |
| GGGAAACTTGTATACGTTGT+AGG | + | chr6_2:72258896-72258915 | Msa0927750:intron | 40.0% | |
| GTGTGGATGTACTATGCTAT+AGG | + | chr6_2:72259167-72259186 | Msa0927750:CDS | 40.0% | |
| ATTGCATGACATGGTACAAG+AGG | + | chr6_2:72259237-72259256 | Msa0927750:CDS | 40.0% | |
| GCTAAACTGGAAAAGGAAGT+TGG | + | chr6_2:72259265-72259284 | Msa0927750:CDS | 40.0% | |
| CATCAGCTTTCTCAATAGCA+AGG | - | chr6_2:72259375-72259394 | None:intergenic | 40.0% | |
| TGAGAAAGCTGATGAATGGT+TGG | + | chr6_2:72259381-72259400 | Msa0927750:CDS | 40.0% | |
| GATGACAATCCAGAATCCAA+AGG | + | chr6_2:72259409-72259428 | Msa0927750:CDS | 40.0% | |
| ACAATCCAGAATCCAAAGGT+TGG | + | chr6_2:72259413-72259432 | Msa0927750:intron | 40.0% | |
| TAGTTCCAACCTTTGGATTC+TGG | - | chr6_2:72259421-72259440 | None:intergenic | 40.0% | |
| CTCTTCAAACACAAACTTGC+AGG | - | chr6_2:72259862-72259881 | None:intergenic | 40.0% | |
| CTGCAAGTTTGTGTTTGAAG+AGG | + | chr6_2:72259860-72259879 | Msa0927750:intron | 40.0% | |
| AATGCCAAACGTAACTTCTG+AGG | + | chr6_2:72259917-72259936 | Msa0927750:CDS | 40.0% | |
| ATGTCCTCAGAAGTTACGTT+TGG | - | chr6_2:72259924-72259943 | None:intergenic | 40.0% | |
| ! | CGTAACTTCTGAGGACATTA+AGG | + | chr6_2:72259926-72259945 | Msa0927750:CDS | 40.0% |
| GTGTGTTTCCAAAAGATCAG+AGG | + | chr6_2:72260006-72260025 | Msa0927750:CDS | 40.0% | |
| TGTTTCCAAAAGATCAGAGG+AGG | + | chr6_2:72260009-72260028 | Msa0927750:CDS | 40.0% | |
| AAGAATATTCTGTGCAAGGC+TGG | - | chr6_2:72260052-72260071 | None:intergenic | 40.0% | |
| !! | CACCAAAAGCGTTGAGATAT+TGG | + | chr6_2:72260130-72260149 | Msa0927750:CDS | 40.0% |
| CAAGGTGCAAAATCTTTCCA+AGG | - | chr6_2:72260286-72260305 | None:intergenic | 40.0% | |
| ! | GAAAGATTTTGCACCTTGCT+TGG | + | chr6_2:72260288-72260307 | Msa0927750:CDS | 40.0% |
| GCCGATACAAAAAATTGCTG+TGG | + | chr6_2:72260347-72260366 | Msa0927750:CDS | 40.0% | |
| AAAAACCTAGCAAGACCACA+TGG | + | chr6_2:72260575-72260594 | Msa0927750:CDS | 40.0% | |
| ATCTAAGGAGAACGAACCAT+CGG | - | chr6_2:72260756-72260775 | None:intergenic | 40.0% | |
| ! | AATTCGTTGGCTAGAATGTC+AGG | + | chr6_2:72260802-72260821 | Msa0927750:CDS | 40.0% |
| ! | ATTCGTTGGCTAGAATGTCA+GGG | + | chr6_2:72260803-72260822 | Msa0927750:CDS | 40.0% |
| !! | ATGGTTTAGTTTGAGGGCAA+CGG | + | chr6_2:72260862-72260881 | Msa0927750:CDS | 40.0% |
| ! | GAAGAAGTTCCTTTTCCGAC+CGG | - | chr6_2:72257780-72257799 | None:intergenic | 45.0% |
| TCGAAAAAAGTTTCCGGCCT+CGG | + | chr6_2:72257866-72257885 | Msa0927750:CDS | 45.0% | |
| TCAAGGAAGCAACTTCGCAA+GGG | + | chr6_2:72257899-72257918 | Msa0927750:CDS | 45.0% | |
| GCAGGTGGTACAAATCGAAT+AGG | - | chr6_2:72257932-72257951 | None:intergenic | 45.0% | |
| TAATCAGAAGGAGGATCAGC+AGG | - | chr6_2:72257950-72257969 | None:intergenic | 45.0% | |
| GCTGATCCTCCTTCTGATTA+CGG | + | chr6_2:72257950-72257969 | Msa0927750:CDS | 45.0% | |
| GAATGTCCGTAATCAGAAGG+AGG | - | chr6_2:72257959-72257978 | None:intergenic | 45.0% | |
| CCTACAGAATGTGTCGTCTT+TGG | - | chr6_2:72258026-72258045 | None:intergenic | 45.0% | |
| CCAAAGACGACACATTCTGT+AGG | + | chr6_2:72258023-72258042 | Msa0927750:CDS | 45.0% | |
| AAGACGACACATTCTGTAGG+AGG | + | chr6_2:72258026-72258045 | Msa0927750:CDS | 45.0% | |
| ! | CAAGGATCCTAGTCTTTGGT+TGG | + | chr6_2:72258084-72258103 | Msa0927750:CDS | 45.0% |
| CTGCATACCAACCAAAGACT+AGG | - | chr6_2:72258094-72258113 | None:intergenic | 45.0% | |
| GCAAACAACAATAAGGGGGA+GGG | - | chr6_2:72258320-72258339 | None:intergenic | 45.0% | |
| AGCAAACAACAATAAGGGGG+AGG | - | chr6_2:72258321-72258340 | None:intergenic | 45.0% | |
| TCTCAATAGCGCTGCTATAG+CGG | + | chr6_2:72258454-72258473 | Msa0927750:intron | 45.0% | |
| GATAGGGCGAGAATGTGAAA+AGG | - | chr6_2:72258650-72258669 | None:intergenic | 45.0% | |
| AAGGAACGTTACTGAGAGAG+AGG | - | chr6_2:72258746-72258765 | None:intergenic | 45.0% | |
| GTTCCTTCTCAGTCTCTAAC+AGG | + | chr6_2:72258759-72258778 | Msa0927750:intron | 45.0% | |
| GAAGGAGAATACAAACCCAG+TGG | - | chr6_2:72258945-72258964 | None:intergenic | 45.0% | |
| TTGAGCTTCAGGCTTCTGAA+CGG | + | chr6_2:72259196-72259215 | Msa0927750:CDS | 45.0% | |
| TGACATGGTACAAGAGGCAA+AGG | + | chr6_2:72259243-72259262 | Msa0927750:CDS | 45.0% | |
| ACAAGAGGCAAAGGCTAAAC+TGG | + | chr6_2:72259252-72259271 | Msa0927750:CDS | 45.0% | |
| GGCAAAGGCTAAACTGGAAA+AGG | + | chr6_2:72259258-72259277 | Msa0927750:CDS | 45.0% | |
| ! | AAGGAAGTTGGTCCTGTTGA+CGG | + | chr6_2:72259277-72259296 | Msa0927750:CDS | 45.0% |
| TCTGCACATCACTGGCAATA+GGG | - | chr6_2:72259342-72259361 | None:intergenic | 45.0% | |
| TTCTGCACATCACTGGCAAT+AGG | - | chr6_2:72259343-72259362 | None:intergenic | 45.0% | |
| ACAGAGTTTCTGCACATCAC+TGG | - | chr6_2:72259350-72259369 | None:intergenic | 45.0% | |
| GGATTCTGGATTGTCATCAG+TGG | - | chr6_2:72259407-72259426 | None:intergenic | 45.0% | |
| AATATTCTGTGCAAGGCTGG+AGG | - | chr6_2:72260049-72260068 | None:intergenic | 45.0% | |
| TATACAGATGTTGGCGACCA+TGG | + | chr6_2:72260086-72260105 | Msa0927750:CDS | 45.0% | |
| ACTTAGCCTCAGAATGACCA+TGG | - | chr6_2:72260106-72260125 | None:intergenic | 45.0% | |
| CAGGATGATACTGAAACTGG+AGG | + | chr6_2:72260191-72260210 | Msa0927750:CDS | 45.0% | |
| GATGATACTGAAACTGGAGG+AGG | + | chr6_2:72260194-72260213 | Msa0927750:CDS | 45.0% | |
| AATCCGGGGTAAGTCATTGA+GGG | - | chr6_2:72260251-72260270 | None:intergenic | 45.0% | |
| AATGACTTACCCCGGATTCA+AGG | + | chr6_2:72260253-72260272 | Msa0927750:CDS | 45.0% | |
| AAGGTCTCGAACCTTGAATC+CGG | - | chr6_2:72260267-72260286 | None:intergenic | 45.0% | |
| GTGAGTTCTTCGTTCAAGTC+AGG | - | chr6_2:72260461-72260480 | None:intergenic | 45.0% | |
| !! | CTCCTCCTTTTGAGTCTTCT+CGG | + | chr6_2:72260480-72260499 | Msa0927750:CDS | 45.0% |
| !! | TCCTCCTTTTGAGTCTTCTC+GGG | + | chr6_2:72260481-72260500 | Msa0927750:CDS | 45.0% |
| TCATCCCGAGAAGACTCAAA+AGG | - | chr6_2:72260488-72260507 | None:intergenic | 45.0% | |
| TCTTCTCGGGATGAAGACAA+TGG | + | chr6_2:72260494-72260513 | Msa0927750:CDS | 45.0% | |
| TTCGTTTGGTCTCCAGGTTT+CGG | - | chr6_2:72260612-72260631 | None:intergenic | 45.0% | |
| AACTTCTTCGTTTGGTCTCC+AGG | - | chr6_2:72260618-72260637 | None:intergenic | 45.0% | |
| ACAGCAGGAACTTCTTCGTT+TGG | - | chr6_2:72260626-72260645 | None:intergenic | 45.0% | |
| TACTTGCACCTACGACTATG+CGG | - | chr6_2:72260655-72260674 | None:intergenic | 45.0% | |
| TCTAAGGAGAACGAACCATC+GGG | - | chr6_2:72260755-72260774 | None:intergenic | 45.0% | |
| GATCGATGATCCGAGTAGTT+TGG | + | chr6_2:72260925-72260944 | Msa0927750:CDS | 45.0% | |
| AGTTGACCTGCCAAACTACT+CGG | - | chr6_2:72260938-72260957 | None:intergenic | 45.0% | |
| TCCAACAAGAGGGCAAGAAA+TGG | + | chr6_2:72260983-72261002 | Msa0927750:CDS | 45.0% | |
| TCCATTTCTTGCCCTCTTGT+TGG | - | chr6_2:72260987-72261006 | None:intergenic | 45.0% | |
| !! | TTCTGAAGTCCGGTCGGAAA+AGG | + | chr6_2:72257768-72257787 | Msa0927750:five_prime_UTR | 50.0% |
| CTCAAGGAAGCAACTTCGCA+AGG | + | chr6_2:72257898-72257917 | Msa0927750:CDS | 50.0% | |
| CAAGGAAGCAACTTCGCAAG+GGG | + | chr6_2:72257900-72257919 | Msa0927750:CDS | 50.0% | |
| AAGGAAGCAACTTCGCAAGG+GGG | + | chr6_2:72257901-72257920 | Msa0927750:CDS | 50.0% | |
| TCTTCTCAAGGGGACTCATG+TGG | + | chr6_2:72258118-72258137 | Msa0927750:CDS | 50.0% | |
| GGACAGCTGATGCAACTTGA+TGG | + | chr6_2:72258199-72258218 | Msa0927750:CDS | 50.0% | |
| CAGCTGATGCAACTTGATGG+TGG | + | chr6_2:72258202-72258221 | Msa0927750:CDS | 50.0% | |
| GGTTATTGTTGTGCCTCCTG+CGG | + | chr6_2:72258223-72258242 | Msa0927750:CDS | 50.0% | |
| TCCAGTAACTTTACCGCAGG+AGG | - | chr6_2:72258239-72258258 | None:intergenic | 50.0% | |
| ACAACAATAAGGGGGAGGGA+GGG | - | chr6_2:72258316-72258335 | None:intergenic | 50.0% | |
| AACAACAATAAGGGGGAGGG+AGG | - | chr6_2:72258317-72258336 | None:intergenic | 50.0% | |
| TTGGAAGCCTAAGGATGCCA+TGG | + | chr6_2:72258540-72258559 | Msa0927750:intron | 50.0% | |
| GAAGAGGGAAGCTGCGATTA+GGG | - | chr6_2:72258705-72258724 | None:intergenic | 50.0% | |
| ! | ATTGGGCTAGATCTGCCACT+GGG | + | chr6_2:72258927-72258946 | Msa0927750:intron | 50.0% |
| TTGGAAGAACCACCGTCAAC+AGG | - | chr6_2:72259292-72259311 | None:intergenic | 50.0% | |
| TGACGGTGGTTCTTCCAAGA+TGG | + | chr6_2:72259294-72259313 | Msa0927750:CDS | 50.0% | |
| GGTTCTTCCAAGATGGTACG+TGG | + | chr6_2:72259301-72259320 | Msa0927750:CDS | 50.0% | |
| GACAATGCCACGTACCATCT+TGG | - | chr6_2:72259311-72259330 | None:intergenic | 50.0% | |
| !!! | AAGCTCCTTTTGGCTCACAG+AGG | + | chr6_2:72259821-72259840 | Msa0927750:intron | 50.0% |
| !!! | AGCTCCTTTTGGCTCACAGA+GGG | + | chr6_2:72259822-72259841 | Msa0927750:intron | 50.0% |
| TGAACCCTCTGTGAGCCAAA+AGG | - | chr6_2:72259829-72259848 | None:intergenic | 50.0% | |
| AACACAAACTTGCAGGCAGC+AGG | - | chr6_2:72259855-72259874 | None:intergenic | 50.0% | |
| TGAGGGATCGATCTCCAGTT+TGG | - | chr6_2:72260234-72260253 | None:intergenic | 50.0% | |
| GATCCCTCAATGACTTACCC+CGG | + | chr6_2:72260245-72260264 | Msa0927750:CDS | 50.0% | |
| GAATCCGGGGTAAGTCATTG+AGG | - | chr6_2:72260252-72260271 | None:intergenic | 50.0% | |
| AGGTCTCGAACCTTGAATCC+GGG | - | chr6_2:72260266-72260285 | None:intergenic | 50.0% | |
| GGATTCAAGGTTCGAGACCT+TGG | + | chr6_2:72260266-72260285 | Msa0927750:CDS | 50.0% | |
| CTTGTTCTTGAGCCCAAGCA+AGG | - | chr6_2:72260304-72260323 | None:intergenic | 50.0% | |
| CTTGCTTGGGCTCAAGAACA+AGG | + | chr6_2:72260302-72260321 | Msa0927750:CDS | 50.0% | |
| TCAAGAACAAGGCTGCCTTG+AGG | + | chr6_2:72260313-72260332 | Msa0927750:CDS | 50.0% | |
| CAAGAACAAGGCTGCCTTGA+GGG | + | chr6_2:72260314-72260333 | Msa0927750:CDS | 50.0% | |
| AAGAACAAGGCTGCCTTGAG+GGG | + | chr6_2:72260315-72260334 | Msa0927750:CDS | 50.0% | |
| AACGATCAAGCCTAGCCATC+CGG | + | chr6_2:72260379-72260398 | Msa0927750:CDS | 50.0% | |
| ! | AAATGCACCGATCGCTCTTC+CGG | - | chr6_2:72260401-72260420 | None:intergenic | 50.0% |
| TCCCGAGAAGACTCAAAAGG+AGG | - | chr6_2:72260485-72260504 | None:intergenic | 50.0% | |
| CAATGGTTGCACTTTGCAGC+AGG | + | chr6_2:72260511-72260530 | Msa0927750:CDS | 50.0% | |
| CTAGCAAGACCACATGGTAG+CGG | + | chr6_2:72260581-72260600 | Msa0927750:CDS | 50.0% | |
| ACTTGCACCTACGACTATGC+GGG | - | chr6_2:72260654-72260673 | None:intergenic | 50.0% | |
| GCATAGTCGTAGGTGCAAGT+AGG | + | chr6_2:72260654-72260673 | Msa0927750:CDS | 50.0% | |
| TCTCCTTTACATGCACCCGA+TGG | + | chr6_2:72260737-72260756 | Msa0927750:CDS | 50.0% | |
| GAACCATCGGGTGCATGTAA+AGG | - | chr6_2:72260743-72260762 | None:intergenic | 50.0% | |
| GATGATCCGAGTAGTTTGGC+AGG | + | chr6_2:72260929-72260948 | Msa0927750:CDS | 50.0% | |
| !! | TCCTTGAGCACTGATTGCCG+AGG | - | chr6_2:72257886-72257905 | None:intergenic | 55.0% |
| TCAGAAGGAGGATCAGCAGG+TGG | - | chr6_2:72257947-72257966 | None:intergenic | 55.0% | |
| GCCTCCTGCGGTAAAGTTAC+TGG | + | chr6_2:72258235-72258254 | Msa0927750:CDS | 55.0% | |
| ! | TGGGGTACCATGGCATCCTT+AGG | - | chr6_2:72258550-72258569 | None:intergenic | 55.0% |
| GATGAGAACGCGGCGTGATA+GGG | - | chr6_2:72258666-72258685 | None:intergenic | 55.0% | |
| AGATGAGAACGCGGCGTGAT+AGG | - | chr6_2:72258667-72258686 | None:intergenic | 55.0% | |
| GCGAGAGTGAGATGAGAACG+CGG | - | chr6_2:72258676-72258695 | None:intergenic | 55.0% | |
| GGAAGAGGGAAGCTGCGATT+AGG | - | chr6_2:72258706-72258725 | None:intergenic | 55.0% | |
| TTCCCTCTTCCTCTCAGTCG+CGG | + | chr6_2:72258715-72258734 | Msa0927750:intron | 55.0% | |
| ! | GATTGGGCTAGATCTGCCAC+TGG | + | chr6_2:72258926-72258945 | Msa0927750:intron | 55.0% |
| ! | GAAGTTGGTCCTGTTGACGG+TGG | + | chr6_2:72259280-72259299 | Msa0927750:CDS | 55.0% |
| TGGTACGTGGCATTGTCAGC+AGG | + | chr6_2:72259314-72259333 | Msa0927750:CDS | 55.0% | |
| TGGCGACCATGGTCATTCTG+AGG | + | chr6_2:72260097-72260116 | Msa0927750:CDS | 55.0% | |
| AACTGGAGGAGGCAGTGAAC+CGG | + | chr6_2:72260205-72260224 | Msa0927750:CDS | 55.0% | |
| ! | TCGATCTCCAGTTTGGAGCC+CGG | - | chr6_2:72260227-72260246 | None:intergenic | 55.0% |
| GGTCTCGAACCTTGAATCCG+GGG | - | chr6_2:72260265-72260284 | None:intergenic | 55.0% | |
| TAGCCATCCGGAAGAGCGAT+CGG | + | chr6_2:72260391-72260410 | Msa0927750:CDS | 55.0% | |
| GGAAGAGCGATCGGTGCATT+TGG | + | chr6_2:72260400-72260419 | Msa0927750:CDS | 55.0% | |
| CACTTTGCAGCAGGCTGTTG+AGG | + | chr6_2:72260520-72260539 | Msa0927750:CDS | 55.0% | |
| ! | CGCTACCATGTGGTCTTGCT+AGG | - | chr6_2:72260583-72260602 | None:intergenic | 55.0% |
| ACTATGCGGGAGTCAACAGC+AGG | - | chr6_2:72260641-72260660 | None:intergenic | 55.0% | |
| ! | GTTGACTCCCGCATAGTCGT+AGG | + | chr6_2:72260644-72260663 | Msa0927750:CDS | 55.0% |
| ! | GGCAACGGAACAAGAGCGTA+GGG | + | chr6_2:72260877-72260896 | Msa0927750:CDS | 55.0% |
| ! | AACGGAACAAGAGCGTAGGG+TGG | + | chr6_2:72260880-72260899 | Msa0927750:CDS | 55.0% |
| !! | TGAGCACTGATTGCCGAGGC+CGG | - | chr6_2:72257882-72257901 | None:intergenic | 60.0% |
| GCCTCGGCAATCAGTGCTCA+AGG | + | chr6_2:72257882-72257901 | Msa0927750:CDS | 60.0% | |
| !! | GCTGCTATAGCGGTGTTGCG+TGG | + | chr6_2:72258464-72258483 | Msa0927750:intron | 60.0% |
| ! | TAGAGCGCTTCACGGGCCTA+CGG | - | chr6_2:72258513-72258532 | None:intergenic | 60.0% |
| AGCGAAAGATGCTCGGCGTG+TGG | + | chr6_2:72259150-72259169 | Msa0927750:CDS | 60.0% | |
| ACTGGAGGAGGCAGTGAACC+GGG | + | chr6_2:72260206-72260225 | Msa0927750:CDS | 60.0% | |
| CAGTGAACCGGGCTCCAAAC+TGG | + | chr6_2:72260217-72260236 | Msa0927750:CDS | 60.0% | |
| GATCGCTCTTCCGGATGGCT+AGG | - | chr6_2:72260392-72260411 | None:intergenic | 60.0% | |
| !! | GCAAGACCACATGGTAGCGG+TGG | + | chr6_2:72260584-72260603 | Msa0927750:CDS | 60.0% |
| TCGGAACCACCGCTACCATG+TGG | - | chr6_2:72260593-72260612 | None:intergenic | 60.0% | |
| GTAGCGGTGGTTCCGAAACC+TGG | + | chr6_2:72260597-72260616 | Msa0927750:CDS | 60.0% | |
| ! | GGGCAACGGAACAAGAGCGT+AGG | + | chr6_2:72260876-72260895 | Msa0927750:CDS | 60.0% |
| !! | AGCGGTGTTGCGTGGCAGTG+TGG | + | chr6_2:72258472-72258491 | Msa0927750:intron | 65.0% |
| CGCCGCGACTGAGAGGAAGA+GGG | - | chr6_2:72258720-72258739 | None:intergenic | 65.0% | |
| ACGCCGCGACTGAGAGGAAG+AGG | - | chr6_2:72258721-72258740 | None:intergenic | 65.0% | |
| GAGGAAACGCCGCGACTGAG+AGG | - | chr6_2:72258727-72258746 | None:intergenic | 65.0% | |
| CGGCACGGCAAAACCCCTCA+AGG | - | chr6_2:72260331-72260350 | None:intergenic | 65.0% | |
| ! | GCACCGATCGCTCTTCCGGA+TGG | - | chr6_2:72260397-72260416 | None:intergenic | 65.0% |
| GTGGCAGTGTGGCCCTGCAC+TGG | + | chr6_2:72258483-72258502 | Msa0927750:intron | 70.0% | |
| GCCTACGGCGTGCCAGTGCA+GGG | - | chr6_2:72258498-72258517 | None:intergenic | 70.0% | |
| ! | GCCCTGCACTGGCACGCCGT+AGG | + | chr6_2:72258494-72258513 | Msa0927750:intron | 75.0% |
| GGCCTACGGCGTGCCAGTGC+AGG | - | chr6_2:72258499-72258518 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 72257578 | 72261036 | 72257578 | ID=Msa0927750;Name=Msa0927750 |
| chr6_2 | mRNA | 72257578 | 72261036 | 72257578 | ID=Msa0927750-mRNA-1;Parent=Msa0927750;Name=Msa0927750-mRNA-1;_AED=0.12;_eAED=0.12;_QI=267|0.5|0.66|1|1|1|3|0|627 |
| chr6_2 | exon | 72257578 | 72258266 | 72257578 | ID=Msa0927750-mRNA-1:exon:12213;Parent=Msa0927750-mRNA-1 |
| chr6_2 | exon | 72259126 | 72259430 | 72259126 | ID=Msa0927750-mRNA-1:exon:12214;Parent=Msa0927750-mRNA-1 |
| chr6_2 | exon | 72259880 | 72261036 | 72259880 | ID=Msa0927750-mRNA-1:exon:12215;Parent=Msa0927750-mRNA-1 |
| chr6_2 | five_prime_UTR | 72257578 | 72257844 | 72257578 | ID=Msa0927750-mRNA-1:five_prime_utr;Parent=Msa0927750-mRNA-1 |
| chr6_2 | CDS | 72257845 | 72258266 | 72257845 | ID=Msa0927750-mRNA-1:cds;Parent=Msa0927750-mRNA-1 |
| chr6_2 | CDS | 72259126 | 72259430 | 72259126 | ID=Msa0927750-mRNA-1:cds;Parent=Msa0927750-mRNA-1 |
| chr6_2 | CDS | 72259880 | 72261036 | 72259880 | ID=Msa0927750-mRNA-1:cds;Parent=Msa0927750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
