Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0927820 | XP_013453052.1 | 97.031 | 640 | 5 | 2 | 1 | 627 | 1 | 639 | 0.0 | 1271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0927820 | sp|Q9LHF5|VIL1_ARATH | 48.154 | 596 | 243 | 15 | 46 | 618 | 45 | 597 | 2.38e-172 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0927750 | Msa0927820 | 0.990903 | 6.746874e-185 | -8.615850e-47 |
| Msa0927820 | Msa0985420 | 0.882645 | 8.755470e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0927820 | MtrunA17_Chr6g0485041 | 97.031 | 640 | 5 | 2 | 1 | 627 | 1 | 639 | 0.0 | 1271 |
| Msa0927820 | MtrunA17_Chr4g0072251 | 45.253 | 316 | 146 | 5 | 21 | 311 | 109 | 422 | 4.83e-81 | 270 |
| Msa0927820 | MtrunA17_Chr4g0072251 | 60.759 | 79 | 30 | 1 | 537 | 615 | 641 | 718 | 4.42e-23 | 104 |
| Msa0927820 | MtrunA17_Chr5g0427611 | 39.590 | 293 | 164 | 4 | 47 | 327 | 139 | 430 | 1.73e-64 | 223 |
| Msa0927820 | MtrunA17_Chr5g0427611 | 57.143 | 70 | 30 | 0 | 541 | 610 | 518 | 587 | 2.23e-20 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0927820 | AT3G24440.2 | 48.148 | 594 | 244 | 14 | 46 | 618 | 45 | 595 | 8.72e-174 | 507 |
| Msa0927820 | AT3G24440.1 | 48.154 | 596 | 243 | 15 | 46 | 618 | 45 | 597 | 2.42e-173 | 506 |
| Msa0927820 | AT5G57380.2 | 43.253 | 289 | 143 | 5 | 50 | 327 | 110 | 388 | 1.45e-67 | 231 |
| Msa0927820 | AT5G57380.2 | 52.000 | 75 | 36 | 0 | 541 | 615 | 510 | 584 | 3.44e-16 | 82.8 |
| Msa0927820 | AT5G57380.1 | 43.253 | 289 | 143 | 5 | 50 | 327 | 130 | 408 | 1.68e-67 | 232 |
| Msa0927820 | AT5G57380.1 | 52.000 | 75 | 36 | 0 | 541 | 615 | 530 | 604 | 3.70e-16 | 82.4 |
| Msa0927820 | AT4G30200.1 | 39.237 | 367 | 178 | 7 | 4 | 331 | 73 | 433 | 2.89e-61 | 216 |
| Msa0927820 | AT4G30200.1 | 55.172 | 87 | 37 | 1 | 532 | 618 | 583 | 667 | 3.95e-22 | 101 |
| Msa0927820 | AT4G30200.3 | 39.237 | 367 | 178 | 7 | 4 | 331 | 90 | 450 | 3.84e-61 | 216 |
| Msa0927820 | AT4G30200.3 | 55.172 | 87 | 37 | 1 | 532 | 618 | 600 | 684 | 3.95e-22 | 101 |
| Msa0927820 | AT4G30200.4 | 37.995 | 379 | 178 | 7 | 4 | 331 | 90 | 462 | 2.92e-60 | 212 |
| Msa0927820 | AT4G30200.2 | 37.995 | 379 | 178 | 7 | 4 | 331 | 90 | 462 | 2.66e-59 | 211 |
| Msa0927820 | AT4G30200.2 | 55.172 | 87 | 37 | 1 | 532 | 618 | 612 | 696 | 4.03e-22 | 101 |
| Msa0927820 | AT2G18880.1 | 38.225 | 293 | 169 | 6 | 50 | 331 | 119 | 410 | 5.58e-51 | 185 |
| Msa0927820 | AT2G18880.1 | 50.667 | 75 | 37 | 0 | 544 | 618 | 440 | 514 | 7.10e-17 | 84.3 |
| Msa0927820 | AT2G18870.1 | 51.648 | 91 | 41 | 1 | 526 | 613 | 123 | 213 | 1.06e-18 | 86.3 |
Find 172 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTTCCAACCTTTGGATTC+TGG | 0.204447 | 6_2:-72330729 | None:intergenic |
| AAAATCCTCCTCTGATCTTT+TGG | 0.225978 | 6_2:-72331325 | None:intergenic |
| CGTAACTTCTGAGGACATTA+AGG | 0.258985 | 6_2:+72331237 | Msa0927820:CDS |
| CACCAAAAGCGTTGAGATAT+TGG | 0.279016 | 6_2:+72331441 | Msa0927820:CDS |
| TACCAATATCTCAACGCTTT+TGG | 0.280459 | 6_2:-72331443 | None:intergenic |
| TAAAGGAGAACCGTTTATTA+AGG | 0.300683 | 6_2:-72332034 | None:intergenic |
| ATAGGATATATTTGAGCTTC+AGG | 0.301437 | 6_2:+72330496 | Msa0927820:CDS |
| TTCGTTTGGTCTCCAGGTTT+CGG | 0.314155 | 6_2:-72331920 | None:intergenic |
| CCTACAGAATGTGTCGTCTT+TGG | 0.328733 | 6_2:-72329332 | None:intergenic |
| AACTTCTTCGTTTGGTCTCC+AGG | 0.330854 | 6_2:-72331926 | None:intergenic |
| CAGGATGACTGAAAAGAAAA+AGG | 0.333304 | 6_2:+72329150 | Msa0927820:exon |
| TCCATTTCTTGCCCTCTTGT+TGG | 0.338773 | 6_2:-72332295 | None:intergenic |
| ACAAGAGGCAAAGGCTAAAC+TGG | 0.339079 | 6_2:+72330563 | Msa0927820:CDS |
| GCCTCCTGCGGTAAAGTTAC+TGG | 0.341604 | 6_2:+72329544 | Msa0927820:CDS |
| ATACTCAAAGTTCTCATCTA+AGG | 0.365083 | 6_2:-72332079 | None:intergenic |
| GGAAGAGCGATCGGTGCATT+TGG | 0.365367 | 6_2:+72331711 | Msa0927820:CDS |
| AATTGACATGAATGCTAAAC+AGG | 0.369248 | 6_2:+72331483 | Msa0927820:CDS |
| ATAACAAGGATCCTAGTCTT+TGG | 0.376232 | 6_2:+72329389 | Msa0927820:CDS |
| AATTCGTTGGCTAGAATGTC+AGG | 0.388611 | 6_2:+72332113 | Msa0927820:CDS |
| GATGAAGAGCACATTCAATA+TGG | 0.388919 | 6_2:-72329459 | None:intergenic |
| CAAGAACAAGGCTGCCTTGA+GGG | 0.391006 | 6_2:+72331625 | Msa0927820:CDS |
| CAGTGAACCGGGCTCCAAAC+TGG | 0.396392 | 6_2:+72331528 | Msa0927820:CDS |
| TGAGGGATCGATCTCCAGTT+TGG | 0.400477 | 6_2:-72331542 | None:intergenic |
| CACTTTGCAGCAGGCTGTTG+AGG | 0.405269 | 6_2:+72331831 | Msa0927820:CDS |
| GCAGGTGGTACAAATCGAAT+AGG | 0.405556 | 6_2:-72329238 | None:intergenic |
| ACAGCAGGAACTTCTTCGTT+TGG | 0.411595 | 6_2:-72331934 | None:intergenic |
| GATCGATGATCCGAGTAGTT+TGG | 0.412460 | 6_2:+72332236 | Msa0927820:CDS |
| AACTGGAGGAGGCAGTGAAC+CGG | 0.415572 | 6_2:+72331516 | Msa0927820:CDS |
| TGCTTACATGGTTTAGTTTG+AGG | 0.422999 | 6_2:+72332166 | Msa0927820:CDS |
| GTAACTTCTGAGGACATTAA+GGG | 0.426701 | 6_2:+72331238 | Msa0927820:CDS |
| GCTGATCCTCCTTCTGATTA+CGG | 0.427415 | 6_2:+72329259 | Msa0927820:CDS |
| AAACAGGATGATACTGAAAC+TGG | 0.428677 | 6_2:+72331499 | Msa0927820:CDS |
| GCTTACATGGTTTAGTTTGA+GGG | 0.431261 | 6_2:+72332167 | Msa0927820:CDS |
| TTCTGCACATCACTGGCAAT+AGG | 0.433169 | 6_2:-72330651 | None:intergenic |
| AAATGCACCGATCGCTCTTC+CGG | 0.433270 | 6_2:-72331709 | None:intergenic |
| GAAACAACAAGCAATTGATA+AGG | 0.439096 | 6_2:-72328971 | None:intergenic |
| TTCTGAAGTCCGGTCGGAAA+AGG | 0.439812 | 6_2:+72329077 | Msa0927820:five_prime_UTR |
| AAGGTCTCGAACCTTGAATC+CGG | 0.441293 | 6_2:-72331575 | None:intergenic |
| AATGACTTACCCCGGATTCA+AGG | 0.443418 | 6_2:+72331564 | Msa0927820:CDS |
| TCCAACAAGAGGGCAAGAAA+TGG | 0.444776 | 6_2:+72332294 | Msa0927820:CDS |
| TTGGAAGAACCACCGTCAAC+AGG | 0.444884 | 6_2:-72330600 | None:intergenic |
| GTGCTTGTCTTTATCAAAGC+AGG | 0.449057 | 6_2:-72329112 | None:intergenic |
| TGTGACAGCACCTTAATAAA+CGG | 0.450247 | 6_2:+72332024 | Msa0927820:CDS |
| ACATTAAGGGATTCAAACTA+TGG | 0.453105 | 6_2:+72331251 | Msa0927820:CDS |
| TCTGCACATCACTGGCAATA+GGG | 0.453195 | 6_2:-72330650 | None:intergenic |
| GACAATGCCACGTACCATCT+TGG | 0.453446 | 6_2:-72330619 | None:intergenic |
| ATTGTATCTTATACAGATGT+TGG | 0.454036 | 6_2:+72331388 | Msa0927820:CDS |
| AAGAATATTCTGTGCAAGGC+TGG | 0.454526 | 6_2:-72331360 | None:intergenic |
| GGATTCAAGGTTCGAGACCT+TGG | 0.456764 | 6_2:+72331577 | Msa0927820:CDS |
| CGCTACCATGTGGTCTTGCT+AGG | 0.457631 | 6_2:-72331891 | None:intergenic |
| GTGAGTTCTTCGTTCAAGTC+AGG | 0.459213 | 6_2:-72331769 | None:intergenic |
| CAATGGTTGCACTTTGCAGC+AGG | 0.460748 | 6_2:+72331822 | Msa0927820:CDS |
| ATGTCCTCAGAAGTTACGTT+TGG | 0.462457 | 6_2:-72331232 | None:intergenic |
| TTAGGCTGAAATTGCTTACA+TGG | 0.463255 | 6_2:+72332154 | Msa0927820:CDS |
| GTGTGGATGTACTATGCTAT+AGG | 0.467184 | 6_2:+72330478 | Msa0927820:CDS |
| GGCAAAGGCTAAACTGGAAA+AGG | 0.469157 | 6_2:+72330569 | Msa0927820:CDS |
| CTTCATAAGTTTCTGAAGTC+CGG | 0.469377 | 6_2:+72329067 | Msa0927820:five_prime_UTR |
| GTCATATGAAGAAAGAGTTT+AGG | 0.474263 | 6_2:+72332136 | Msa0927820:CDS |
| GTAGCGGTGGTTCCGAAACC+TGG | 0.474866 | 6_2:+72331908 | Msa0927820:CDS |
| AAACAACAAGCAATTGATAA+GGG | 0.477002 | 6_2:-72328970 | None:intergenic |
| AAAGTTGGAGTTGTTGATCA+TGG | 0.477180 | 6_2:+72329487 | Msa0927820:CDS |
| AGTGCTTTGAACATGAGAAC+TGG | 0.484299 | 6_2:-72328997 | None:intergenic |
| TCGATCTCCAGTTTGGAGCC+CGG | 0.491441 | 6_2:-72331535 | None:intergenic |
| AACGATCAAGCCTAGCCATC+CGG | 0.494565 | 6_2:+72331690 | Msa0927820:CDS |
| TGGTACGTGGCATTGTCAGC+AGG | 0.498805 | 6_2:+72330625 | Msa0927820:CDS |
| ATTACGGACATTCAAACTCC+TGG | 0.498965 | 6_2:+72329275 | Msa0927820:CDS |
| GGACAGCTGATGCAACTTGA+TGG | 0.502049 | 6_2:+72329508 | Msa0927820:CDS |
| TGAGCACTGATTGCCGAGGC+CGG | 0.504332 | 6_2:-72329188 | None:intergenic |
| GCACATTTCTTCAGAAAAGC+AGG | 0.504952 | 6_2:+72329131 | Msa0927820:five_prime_UTR |
| GATCGCTCTTCCGGATGGCT+AGG | 0.507299 | 6_2:-72331700 | None:intergenic |
| GGTAAAGTTACTGGAATACT+TGG | 0.508656 | 6_2:+72329553 | Msa0927820:CDS |
| GAACCATCGGGTGCATGTAA+AGG | 0.509944 | 6_2:-72332051 | None:intergenic |
| AGGTCTCGAACCTTGAATCC+GGG | 0.512295 | 6_2:-72331574 | None:intergenic |
| AAGGAAGTTGGTCCTGTTGA+CGG | 0.515182 | 6_2:+72330588 | Msa0927820:CDS |
| CTCAAGGAAGCAACTTCGCA+AGG | 0.519076 | 6_2:+72329207 | Msa0927820:CDS |
| TAAATATAGCGAAAGATGCT+CGG | 0.525599 | 6_2:+72330454 | Msa0927820:CDS |
| ACTATGGTATTACAAGACTA+GGG | 0.525868 | 6_2:+72331267 | Msa0927820:CDS |
| AGCGAAAGATGCTCGGCGTG+TGG | 0.526435 | 6_2:+72330461 | Msa0927820:CDS |
| CAGGTGGTACAAATCGAATA+GGG | 0.533496 | 6_2:-72329237 | None:intergenic |
| TGGATTCAATAACAAGGTTG+TGG | 0.533711 | 6_2:+72332314 | Msa0927820:CDS |
| CAGAAACAACATTCAGATCA+AGG | 0.533858 | 6_2:-72331744 | None:intergenic |
| TCTAAGGAGAACGAACCATC+GGG | 0.533883 | 6_2:-72332063 | None:intergenic |
| CATCAGCTTTCTCAATAGCA+AGG | 0.536745 | 6_2:-72330683 | None:intergenic |
| ACAGAGTTTCTGCACATCAC+TGG | 0.537538 | 6_2:-72330658 | None:intergenic |
| TAATCAGAAGGAGGATCAGC+AGG | 0.538096 | 6_2:-72329256 | None:intergenic |
| GCCTCGGCAATCAGTGCTCA+AGG | 0.540279 | 6_2:+72329191 | Msa0927820:CDS |
| CGAAAAGAATATTCTGTGCA+AGG | 0.542417 | 6_2:-72331364 | None:intergenic |
| CTATTGAGAAAGCTGATGAA+TGG | 0.543260 | 6_2:+72330688 | Msa0927820:CDS |
| TATACAGATGTTGGCGACCA+TGG | 0.544516 | 6_2:+72331397 | Msa0927820:CDS |
| CCATCTCTTCGATGATAACA+AGG | 0.545578 | 6_2:+72329375 | Msa0927820:CDS |
| CAAGGATCCTAGTCTTTGGT+TGG | 0.547359 | 6_2:+72329393 | Msa0927820:CDS |
| ATTGTGTTAAAGTAATTCGT+TGG | 0.547857 | 6_2:+72332100 | Msa0927820:CDS |
| CTTGCTTGGGCTCAAGAACA+AGG | 0.549129 | 6_2:+72331613 | Msa0927820:CDS |
| GCTAAACTGGAAAAGGAAGT+TGG | 0.550877 | 6_2:+72330576 | Msa0927820:CDS |
| CTGCATACCAACCAAAGACT+AGG | 0.554285 | 6_2:-72329400 | None:intergenic |
| ATGGTTTAGTTTGAGGGCAA+CGG | 0.555090 | 6_2:+72332173 | Msa0927820:CDS |
| TCATCCCGAGAAGACTCAAA+AGG | 0.555122 | 6_2:-72331796 | None:intergenic |
| TTCTCATGTTCAAAGCACTC+TGG | 0.555151 | 6_2:+72329001 | Msa0927820:five_prime_UTR |
| AACTATGGTATTACAAGACT+AGG | 0.555562 | 6_2:+72331266 | Msa0927820:CDS |
| ACTGGAGGAGGCAGTGAACC+GGG | 0.555883 | 6_2:+72331517 | Msa0927820:CDS |
| GGATTCTGGATTGTCATCAG+TGG | 0.556540 | 6_2:-72330715 | None:intergenic |
| GATGATCCGAGTAGTTTGGC+AGG | 0.560501 | 6_2:+72332240 | Msa0927820:CDS |
| CTGATATTATATCCAACAAG+AGG | 0.561241 | 6_2:+72332283 | Msa0927820:CDS |
| AATCCGGGGTAAGTCATTGA+GGG | 0.561658 | 6_2:-72331559 | None:intergenic |
| CTTGTTCTTGAGCCCAAGCA+AGG | 0.563534 | 6_2:-72331612 | None:intergenic |
| TATTCCAGTAACTTTACCGC+AGG | 0.566806 | 6_2:-72329548 | None:intergenic |
| GAATCCGGGGTAAGTCATTG+AGG | 0.567382 | 6_2:-72331560 | None:intergenic |
| ATCTAAGGAGAACGAACCAT+CGG | 0.568116 | 6_2:-72332064 | None:intergenic |
| AGTTGACCTGCCAAACTACT+CGG | 0.568871 | 6_2:-72332246 | None:intergenic |
| TCCAGTAACTTTACCGCAGG+AGG | 0.569932 | 6_2:-72329545 | None:intergenic |
| CCTTGTTATCATCGAAGAGA+TGG | 0.571222 | 6_2:-72329375 | None:intergenic |
| ATCAGCTTTCTCAATAGCAA+GGG | 0.571702 | 6_2:-72330682 | None:intergenic |
| AAGAACAAGGCTGCCTTGAG+GGG | 0.571814 | 6_2:+72331626 | Msa0927820:CDS |
| TAGCCATCCGGAAGAGCGAT+CGG | 0.577859 | 6_2:+72331702 | Msa0927820:CDS |
| GTATGCAGTGAATCTTCTCA+AGG | 0.582388 | 6_2:+72329415 | Msa0927820:CDS |
| GGCAACGGAACAAGAGCGTA+GGG | 0.584349 | 6_2:+72332188 | Msa0927820:CDS |
| GTGTGTTTCCAAAAGATCAG+AGG | 0.586881 | 6_2:+72331317 | Msa0927820:CDS |
| TGACATGGTACAAGAGGCAA+AGG | 0.592745 | 6_2:+72330554 | Msa0927820:CDS |
| TGACGGTGGTTCTTCCAAGA+TGG | 0.594589 | 6_2:+72330605 | Msa0927820:CDS |
| GTTGACTCCCGCATAGTCGT+AGG | 0.596566 | 6_2:+72331955 | Msa0927820:CDS |
| TCTCCTTTACATGCACCCGA+TGG | 0.598572 | 6_2:+72332048 | Msa0927820:CDS |
| TTCATGTCAATTGATGAAGT+CGG | 0.599447 | 6_2:-72331472 | None:intergenic |
| TCTTCTCAAGGGGACTCATG+TGG | 0.600895 | 6_2:+72329427 | Msa0927820:CDS |
| TGAGAAAGCTGATGAATGGT+TGG | 0.603762 | 6_2:+72330692 | Msa0927820:CDS |
| CGGACTTCAGAAACTTATGA+AGG | 0.607463 | 6_2:-72329066 | None:intergenic |
| CAAGGAAGCAACTTCGCAAG+GGG | 0.609915 | 6_2:+72329209 | Msa0927820:CDS |
| CAAGGTGCAAAATCTTTCCA+AGG | 0.610341 | 6_2:-72331594 | None:intergenic |
| TCAAGGAAGCAACTTCGCAA+GGG | 0.610831 | 6_2:+72329208 | Msa0927820:CDS |
| TCCTTGAGCACTGATTGCCG+AGG | 0.613500 | 6_2:-72329192 | None:intergenic |
| GGGCAACGGAACAAGAGCGT+AGG | 0.614096 | 6_2:+72332187 | Msa0927820:CDS |
| ATTGCATGACATGGTACAAG+AGG | 0.616726 | 6_2:+72330548 | Msa0927820:CDS |
| TGTTTCCAAAAGATCAGAGG+AGG | 0.617266 | 6_2:+72331320 | Msa0927820:CDS |
| AATGCCAAACGTAACTTCTG+AGG | 0.620213 | 6_2:+72331228 | Msa0927820:CDS |
| TTTGAATGTCCGTAATCAGA+AGG | 0.621485 | 6_2:-72329268 | None:intergenic |
| TGATATTATATCCAACAAGA+GGG | 0.623788 | 6_2:+72332284 | Msa0927820:CDS |
| ACTATGCGGGAGTCAACAGC+AGG | 0.624903 | 6_2:-72331949 | None:intergenic |
| TATGCAGTGAATCTTCTCAA+GGG | 0.633109 | 6_2:+72329416 | Msa0927820:CDS |
| TTGAGCTTCAGGCTTCTGAA+CGG | 0.633588 | 6_2:+72330507 | Msa0927820:CDS |
| GTAAAGTTACTGGAATACTT+GGG | 0.634259 | 6_2:+72329554 | Msa0927820:CDS |
| ACTTGCACCTACGACTATGC+GGG | 0.634727 | 6_2:-72331962 | None:intergenic |
| CTAGCAAGACCACATGGTAG+CGG | 0.635274 | 6_2:+72331892 | Msa0927820:CDS |
| ATAAGTTTCTGAAGTCCGGT+CGG | 0.635908 | 6_2:+72329071 | Msa0927820:five_prime_UTR |
| GCATAGTCGTAGGTGCAAGT+AGG | 0.636726 | 6_2:+72331965 | Msa0927820:CDS |
| CCAAAGACGACACATTCTGT+AGG | 0.639129 | 6_2:+72329332 | Msa0927820:CDS |
| AAGACGACACATTCTGTAGG+AGG | 0.639361 | 6_2:+72329335 | Msa0927820:CDS |
| ATGCAGTGAATCTTCTCAAG+GGG | 0.641363 | 6_2:+72329417 | Msa0927820:CDS |
| TCAAGAACAAGGCTGCCTTG+AGG | 0.643311 | 6_2:+72331624 | Msa0927820:CDS |
| AATATTCTGTGCAAGGCTGG+AGG | 0.643828 | 6_2:-72331357 | None:intergenic |
| ATTTAAAGAATTGCATGACA+TGG | 0.644214 | 6_2:+72330539 | Msa0927820:CDS |
| GGTCTCGAACCTTGAATCCG+GGG | 0.645521 | 6_2:-72331573 | None:intergenic |
| GATGATACTGAAACTGGAGG+AGG | 0.647232 | 6_2:+72331505 | Msa0927820:CDS |
| GCAAGACCACATGGTAGCGG+TGG | 0.655229 | 6_2:+72331895 | Msa0927820:CDS |
| GATCCCTCAATGACTTACCC+CGG | 0.655434 | 6_2:+72331556 | Msa0927820:CDS |
| GGTTATTGTTGTGCCTCCTG+CGG | 0.655592 | 6_2:+72329532 | Msa0927820:CDS |
| GATGACAATCCAGAATCCAA+AGG | 0.656967 | 6_2:+72330720 | Msa0927820:CDS |
| GAAGTTGGTCCTGTTGACGG+TGG | 0.657973 | 6_2:+72330591 | Msa0927820:CDS |
| TGGCGACCATGGTCATTCTG+AGG | 0.659046 | 6_2:+72331408 | Msa0927820:CDS |
| GGTTCTTCCAAGATGGTACG+TGG | 0.663592 | 6_2:+72330612 | Msa0927820:CDS |
| TCCCGAGAAGACTCAAAAGG+AGG | 0.665620 | 6_2:-72331793 | None:intergenic |
| GAATGTCCGTAATCAGAAGG+AGG | 0.666170 | 6_2:-72329265 | None:intergenic |
| TACTTGCACCTACGACTATG+CGG | 0.668138 | 6_2:-72331963 | None:intergenic |
| CAGGATGATACTGAAACTGG+AGG | 0.670490 | 6_2:+72331502 | Msa0927820:CDS |
| ATTCGTTGGCTAGAATGTCA+GGG | 0.682204 | 6_2:+72332114 | Msa0927820:CDS |
| AAGAAATGGATTCAATAACA+AGG | 0.687617 | 6_2:+72332308 | Msa0927820:CDS |
| TCTTCTCGGGATGAAGACAA+TGG | 0.691060 | 6_2:+72331805 | Msa0927820:CDS |
| TCGGAACCACCGCTACCATG+TGG | 0.691197 | 6_2:-72331901 | None:intergenic |
| CTATGGTATTACAAGACTAG+GGG | 0.692533 | 6_2:+72331268 | Msa0927820:CDS |
| TCAGAAGGAGGATCAGCAGG+TGG | 0.694739 | 6_2:-72329253 | None:intergenic |
| ACTTAGCCTCAGAATGACCA+TGG | 0.702405 | 6_2:-72331414 | None:intergenic |
| CAGCTGATGCAACTTGATGG+TGG | 0.702578 | 6_2:+72329511 | Msa0927820:CDS |
| AAGGAAGCAACTTCGCAAGG+GGG | 0.703361 | 6_2:+72329210 | Msa0927820:CDS |
| AACGGAACAAGAGCGTAGGG+TGG | 0.711248 | 6_2:+72332191 | Msa0927820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAAAAAACTTTTTTTTATT+GGG | - | chr6_2:72329878-72329897 | None:intergenic | 10.0% |
| !!! | AAGAAAAAACTTTTTTTTAT+TGG | - | chr6_2:72329879-72329898 | None:intergenic | 10.0% |
| !! | TGTAGAAATAAAAAAAATTA+GGG | + | chr6_2:72330184-72330203 | Msa0927820:intron | 10.0% |
| !!! | GAAAAAACTTTTTTTTATTG+GGG | - | chr6_2:72329877-72329896 | None:intergenic | 15.0% |
| !!! | CTTTTTTCAGAAATAATAAT+AGG | + | chr6_2:72329902-72329921 | Msa0927820:intron | 15.0% |
| !! | CTGTAGAAATAAAAAAAATT+AGG | + | chr6_2:72330183-72330202 | Msa0927820:intron | 15.0% |
| !! | GTAGAAATAAAAAAAATTAG+GGG | + | chr6_2:72330185-72330204 | Msa0927820:intron | 15.0% |
| !!! | ATTTAGAACTTGATTTTTAT+CGG | + | chr6_2:72330379-72330398 | Msa0927820:intron | 15.0% |
| !! | TTAAAATCATCTGTAAAAAA+AGG | - | chr6_2:72330947-72330966 | None:intergenic | 15.0% |
| !!! | TTTTTTATTTCTACAGTTCA+GGG | - | chr6_2:72330179-72330198 | None:intergenic | 20.0% |
| !!! | TTTTTTTATTTCTACAGTTC+AGG | - | chr6_2:72330180-72330199 | None:intergenic | 20.0% |
| !! | TTTAATAAAATTACAGAAGC+TGG | + | chr6_2:72330421-72330440 | Msa0927820:intron | 20.0% |
| !!! | TTTGTTTTACTAACCATTAA+AGG | + | chr6_2:72330787-72330806 | Msa0927820:intron | 20.0% |
| !!! | TTGTTTTACTAACCATTAAA+GGG | + | chr6_2:72330788-72330807 | Msa0927820:intron | 20.0% |
| !!! | AAAAAATGTGATTTTCACTA+CGG | + | chr6_2:72330966-72330985 | Msa0927820:intron | 20.0% |
| !!! | GAGTTCTAAATTTGATTTAT+CGG | + | chr6_2:72331094-72331113 | Msa0927820:intron | 20.0% |
| ! | AAACAACAAGCAATTGATAA+GGG | - | chr6_2:72328973-72328992 | None:intergenic | 25.0% |
| !! | TATATTTTATTGGAAGCCTA+AGG | + | chr6_2:72329840-72329859 | Msa0927820:intron | 25.0% |
| ! | ATTTAAAGAATTGCATGACA+TGG | + | chr6_2:72330539-72330558 | Msa0927820:CDS | 25.0% |
| ! | AGAAAAAAGCTATAACAAAC+AGG | - | chr6_2:72330814-72330833 | None:intergenic | 25.0% |
| ! | ATTGTATCTTATACAGATGT+TGG | + | chr6_2:72331388-72331407 | Msa0927820:CDS | 25.0% |
| ! | ATTGTGTTAAAGTAATTCGT+TGG | + | chr6_2:72332100-72332119 | Msa0927820:CDS | 25.0% |
| ! | TGATATTATATCCAACAAGA+GGG | + | chr6_2:72332284-72332303 | Msa0927820:CDS | 25.0% |
| !! | AAGAAATGGATTCAATAACA+AGG | + | chr6_2:72332308-72332327 | Msa0927820:CDS | 25.0% |
| GAAACAACAAGCAATTGATA+AGG | - | chr6_2:72328974-72328993 | None:intergenic | 30.0% | |
| GTAAAGTTACTGGAATACTT+GGG | + | chr6_2:72329554-72329573 | Msa0927820:CDS | 30.0% | |
| ! | TTTCTGTGTTTCTACCATTA+AGG | + | chr6_2:72329679-72329698 | Msa0927820:intron | 30.0% |
| ! | ATAAAATATAGAGCGCTTCA+CGG | - | chr6_2:72329830-72329849 | None:intergenic | 30.0% |
| !! | TGAAGCGCTCTATATTTTAT+TGG | + | chr6_2:72329830-72329849 | Msa0927820:intron | 30.0% |
| !!! | TTTTTTTTATTGGGGTACCA+TGG | - | chr6_2:72329869-72329888 | None:intergenic | 30.0% |
| AAAAGGAAACATAAGACTGA+GGG | - | chr6_2:72329942-72329961 | None:intergenic | 30.0% | |
| ! | TGATTTTTATCGGATGACAT+TGG | + | chr6_2:72330389-72330408 | Msa0927820:intron | 30.0% |
| TAAATATAGCGAAAGATGCT+CGG | + | chr6_2:72330454-72330473 | Msa0927820:CDS | 30.0% | |
| ATAGGATATATTTGAGCTTC+AGG | + | chr6_2:72330496-72330515 | Msa0927820:CDS | 30.0% | |
| ! | TTAACATGATAAGCTCCTTT+TGG | + | chr6_2:72331122-72331141 | Msa0927820:intron | 30.0% |
| ACATTAAGGGATTCAAACTA+TGG | + | chr6_2:72331251-72331270 | Msa0927820:CDS | 30.0% | |
| AACTATGGTATTACAAGACT+AGG | + | chr6_2:72331266-72331285 | Msa0927820:CDS | 30.0% | |
| ACTATGGTATTACAAGACTA+GGG | + | chr6_2:72331267-72331286 | Msa0927820:CDS | 30.0% | |
| ! | CTTGCACAGAATATTCTTTT+CGG | + | chr6_2:72331365-72331384 | Msa0927820:CDS | 30.0% |
| TTCATGTCAATTGATGAAGT+CGG | - | chr6_2:72331475-72331494 | None:intergenic | 30.0% | |
| AATTGACATGAATGCTAAAC+AGG | + | chr6_2:72331483-72331502 | Msa0927820:CDS | 30.0% | |
| !!! | ACCACAGCAATTTTTTGTAT+CGG | - | chr6_2:72331662-72331681 | None:intergenic | 30.0% |
| ! | GTTTTTCTCTAAATCATGAG+AGG | - | chr6_2:72331872-72331891 | None:intergenic | 30.0% |
| TAAAGGAGAACCGTTTATTA+AGG | - | chr6_2:72332037-72332056 | None:intergenic | 30.0% | |
| ATACTCAAAGTTCTCATCTA+AGG | - | chr6_2:72332082-72332101 | None:intergenic | 30.0% | |
| GTCATATGAAGAAAGAGTTT+AGG | + | chr6_2:72332136-72332155 | Msa0927820:CDS | 30.0% | |
| CTGATATTATATCCAACAAG+AGG | + | chr6_2:72332283-72332302 | Msa0927820:CDS | 30.0% | |
| ! | TCAAAGCACTCTGGAAAAAA+TGG | + | chr6_2:72329010-72329029 | Msa0927820:five_prime_UTR | 35.0% |
| !! | CTTCATAAGTTTCTGAAGTC+CGG | + | chr6_2:72329067-72329086 | Msa0927820:five_prime_UTR | 35.0% |
| CAGGATGACTGAAAAGAAAA+AGG | + | chr6_2:72329150-72329169 | Msa0927820:exon | 35.0% | |
| AAGGACTCGAAAAAAGTTTC+CGG | + | chr6_2:72329169-72329188 | Msa0927820:CDS | 35.0% | |
| TTTGAATGTCCGTAATCAGA+AGG | - | chr6_2:72329271-72329290 | None:intergenic | 35.0% | |
| ! | ATAACAAGGATCCTAGTCTT+TGG | + | chr6_2:72329389-72329408 | Msa0927820:CDS | 35.0% |
| TATGCAGTGAATCTTCTCAA+GGG | + | chr6_2:72329416-72329435 | Msa0927820:CDS | 35.0% | |
| ! | GATGAAGAGCACATTCAATA+TGG | - | chr6_2:72329462-72329481 | None:intergenic | 35.0% |
| GCTCTTCATCATGAAAAAGT+TGG | + | chr6_2:72329472-72329491 | Msa0927820:CDS | 35.0% | |
| AAAGTTGGAGTTGTTGATCA+TGG | + | chr6_2:72329487-72329506 | Msa0927820:CDS | 35.0% | |
| GGTAAAGTTACTGGAATACT+TGG | + | chr6_2:72329553-72329572 | Msa0927820:CDS | 35.0% | |
| AACAGCAAACAACAATAAGG+GGG | - | chr6_2:72329633-72329652 | None:intergenic | 35.0% | |
| CAACAGCAAACAACAATAAG+GGG | - | chr6_2:72329634-72329653 | None:intergenic | 35.0% | |
| CCAACAGCAAACAACAATAA+GGG | - | chr6_2:72329635-72329654 | None:intergenic | 35.0% | |
| ACCAACAGCAAACAACAATA+AGG | - | chr6_2:72329636-72329655 | None:intergenic | 35.0% | |
| TCACATGTATCGTTCCTTAA+TGG | - | chr6_2:72329696-72329715 | None:intergenic | 35.0% | |
| TTGAGACAACATACATCAAC+TGG | - | chr6_2:72329749-72329768 | None:intergenic | 35.0% | |
| ! | TAAAATATAGAGCGCTTCAC+GGG | - | chr6_2:72329829-72329848 | None:intergenic | 35.0% |
| GAAAAGGAAACATAAGACTG+AGG | - | chr6_2:72329943-72329962 | None:intergenic | 35.0% | |
| ACGTTGTAGGTGAAATTGAT+TGG | + | chr6_2:72330218-72330237 | Msa0927820:intron | 35.0% | |
| CGTTGTAGGTGAAATTGATT+GGG | + | chr6_2:72330219-72330238 | Msa0927820:intron | 35.0% | |
| TCAAACAGAAACAGAAAGGA+AGG | - | chr6_2:72330272-72330291 | None:intergenic | 35.0% | |
| GAACTCAAACAGAAACAGAA+AGG | - | chr6_2:72330276-72330295 | None:intergenic | 35.0% | |
| ! | CTGTTTGAGTTCTTCTTTCT+TGG | + | chr6_2:72330284-72330303 | Msa0927820:intron | 35.0% |
| ATCAGCTTTCTCAATAGCAA+GGG | - | chr6_2:72330685-72330704 | None:intergenic | 35.0% | |
| CTATTGAGAAAGCTGATGAA+TGG | + | chr6_2:72330688-72330707 | Msa0927820:CDS | 35.0% | |
| AGAGAAATAGTTCCAACCTT+TGG | - | chr6_2:72330739-72330758 | None:intergenic | 35.0% | |
| TAACACACACACATCAGAAA+AGG | - | chr6_2:72330762-72330781 | None:intergenic | 35.0% | |
| ATAACAAACAGGCCCTTTAA+TGG | - | chr6_2:72330803-72330822 | None:intergenic | 35.0% | |
| ! | AACTGCTTTGCATTTGAAAC+AGG | - | chr6_2:72330902-72330921 | None:intergenic | 35.0% |
| ! | GTAACTTCTGAGGACATTAA+GGG | + | chr6_2:72331238-72331257 | Msa0927820:CDS | 35.0% |
| CTATGGTATTACAAGACTAG+GGG | + | chr6_2:72331268-72331287 | Msa0927820:CDS | 35.0% | |
| !! | TCTTTTGGAAACACACAAAC+AGG | - | chr6_2:72331313-72331332 | None:intergenic | 35.0% |
| ! | AAAATCCTCCTCTGATCTTT+TGG | - | chr6_2:72331328-72331347 | None:intergenic | 35.0% |
| CGAAAAGAATATTCTGTGCA+AGG | - | chr6_2:72331367-72331386 | None:intergenic | 35.0% | |
| ! | TACCAATATCTCAACGCTTT+TGG | - | chr6_2:72331446-72331465 | None:intergenic | 35.0% |
| AAACAGGATGATACTGAAAC+TGG | + | chr6_2:72331499-72331518 | Msa0927820:CDS | 35.0% | |
| ! | AAAGATTTTGCACCTTGCTT+GGG | + | chr6_2:72331600-72331619 | Msa0927820:CDS | 35.0% |
| !!! | AGCAATTTTTTGTATCGGCA+CGG | - | chr6_2:72331657-72331676 | None:intergenic | 35.0% |
| CAGAAACAACATTCAGATCA+AGG | - | chr6_2:72331747-72331766 | None:intergenic | 35.0% | |
| TGTGACAGCACCTTAATAAA+CGG | + | chr6_2:72332024-72332043 | Msa0927820:CDS | 35.0% | |
| TTAGGCTGAAATTGCTTACA+TGG | + | chr6_2:72332154-72332173 | Msa0927820:CDS | 35.0% | |
| !! | TGCTTACATGGTTTAGTTTG+AGG | + | chr6_2:72332166-72332185 | Msa0927820:CDS | 35.0% |
| !! | GCTTACATGGTTTAGTTTGA+GGG | + | chr6_2:72332167-72332186 | Msa0927820:CDS | 35.0% |
| TGGATTCAATAACAAGGTTG+TGG | + | chr6_2:72332314-72332333 | Msa0927820:CDS | 35.0% | |
| ! | AGTGCTTTGAACATGAGAAC+TGG | - | chr6_2:72329000-72329019 | None:intergenic | 40.0% |
| ! | TTCTCATGTTCAAAGCACTC+TGG | + | chr6_2:72329001-72329020 | Msa0927820:five_prime_UTR | 40.0% |
| CGGACTTCAGAAACTTATGA+AGG | - | chr6_2:72329069-72329088 | None:intergenic | 40.0% | |
| !! | ATAAGTTTCTGAAGTCCGGT+CGG | + | chr6_2:72329071-72329090 | Msa0927820:five_prime_UTR | 40.0% |
| GTGCTTGTCTTTATCAAAGC+AGG | - | chr6_2:72329115-72329134 | None:intergenic | 40.0% | |
| GCACATTTCTTCAGAAAAGC+AGG | + | chr6_2:72329131-72329150 | Msa0927820:five_prime_UTR | 40.0% | |
| CAGGTGGTACAAATCGAATA+GGG | - | chr6_2:72329240-72329259 | None:intergenic | 40.0% | |
| ATTACGGACATTCAAACTCC+TGG | + | chr6_2:72329275-72329294 | Msa0927820:CDS | 40.0% | |
| ! | AGCAGAGTTTTTACAGATCC+AGG | - | chr6_2:72329296-72329315 | None:intergenic | 40.0% |
| ! | CCTTGTTATCATCGAAGAGA+TGG | - | chr6_2:72329378-72329397 | None:intergenic | 40.0% |
| CCATCTCTTCGATGATAACA+AGG | + | chr6_2:72329375-72329394 | Msa0927820:CDS | 40.0% | |
| GTATGCAGTGAATCTTCTCA+AGG | + | chr6_2:72329415-72329434 | Msa0927820:CDS | 40.0% | |
| ATGCAGTGAATCTTCTCAAG+GGG | + | chr6_2:72329417-72329436 | Msa0927820:CDS | 40.0% | |
| TATTCCAGTAACTTTACCGC+AGG | - | chr6_2:72329551-72329570 | None:intergenic | 40.0% | |
| TTTCTTCACCTGCTGTGTTA+TGG | + | chr6_2:72329585-72329604 | Msa0927820:intron | 40.0% | |
| TACAACATCCATAACACAGC+AGG | - | chr6_2:72329596-72329615 | None:intergenic | 40.0% | |
| !! | CCCTTATTGTTGTTTGCTGT+TGG | + | chr6_2:72329632-72329651 | Msa0927820:intron | 40.0% |
| TGTTGGTATAGTGACGCTTT+CGG | + | chr6_2:72329649-72329668 | Msa0927820:intron | 40.0% | |
| GATACATGTGAGTCGTATCT+AGG | + | chr6_2:72329705-72329724 | Msa0927820:intron | 40.0% | |
| AAACCTGTTAGAGACTGAGA+AGG | - | chr6_2:72330074-72330093 | None:intergenic | 40.0% | |
| GGGAAACTTGTATACGTTGT+AGG | + | chr6_2:72330205-72330224 | Msa0927820:intron | 40.0% | |
| GTGTGGATGTACTATGCTAT+AGG | + | chr6_2:72330478-72330497 | Msa0927820:CDS | 40.0% | |
| ATTGCATGACATGGTACAAG+AGG | + | chr6_2:72330548-72330567 | Msa0927820:CDS | 40.0% | |
| GCTAAACTGGAAAAGGAAGT+TGG | + | chr6_2:72330576-72330595 | Msa0927820:CDS | 40.0% | |
| CATCAGCTTTCTCAATAGCA+AGG | - | chr6_2:72330686-72330705 | None:intergenic | 40.0% | |
| TGAGAAAGCTGATGAATGGT+TGG | + | chr6_2:72330692-72330711 | Msa0927820:CDS | 40.0% | |
| GATGACAATCCAGAATCCAA+AGG | + | chr6_2:72330720-72330739 | Msa0927820:CDS | 40.0% | |
| ACAATCCAGAATCCAAAGGT+TGG | + | chr6_2:72330724-72330743 | Msa0927820:intron | 40.0% | |
| TAGTTCCAACCTTTGGATTC+TGG | - | chr6_2:72330732-72330751 | None:intergenic | 40.0% | |
| CTCTTCAAACACAAACTTGC+AGG | - | chr6_2:72331173-72331192 | None:intergenic | 40.0% | |
| CTGCAAGTTTGTGTTTGAAG+AGG | + | chr6_2:72331171-72331190 | Msa0927820:intron | 40.0% | |
| AATGCCAAACGTAACTTCTG+AGG | + | chr6_2:72331228-72331247 | Msa0927820:CDS | 40.0% | |
| ATGTCCTCAGAAGTTACGTT+TGG | - | chr6_2:72331235-72331254 | None:intergenic | 40.0% | |
| ! | CGTAACTTCTGAGGACATTA+AGG | + | chr6_2:72331237-72331256 | Msa0927820:CDS | 40.0% |
| GTGTGTTTCCAAAAGATCAG+AGG | + | chr6_2:72331317-72331336 | Msa0927820:CDS | 40.0% | |
| TGTTTCCAAAAGATCAGAGG+AGG | + | chr6_2:72331320-72331339 | Msa0927820:CDS | 40.0% | |
| AAGAATATTCTGTGCAAGGC+TGG | - | chr6_2:72331363-72331382 | None:intergenic | 40.0% | |
| !! | CACCAAAAGCGTTGAGATAT+TGG | + | chr6_2:72331441-72331460 | Msa0927820:CDS | 40.0% |
| CAAGGTGCAAAATCTTTCCA+AGG | - | chr6_2:72331597-72331616 | None:intergenic | 40.0% | |
| ! | GAAAGATTTTGCACCTTGCT+TGG | + | chr6_2:72331599-72331618 | Msa0927820:CDS | 40.0% |
| GCCGATACAAAAAATTGCTG+TGG | + | chr6_2:72331658-72331677 | Msa0927820:CDS | 40.0% | |
| AAAAACCTAGCAAGACCACA+TGG | + | chr6_2:72331886-72331905 | Msa0927820:CDS | 40.0% | |
| ATCTAAGGAGAACGAACCAT+CGG | - | chr6_2:72332067-72332086 | None:intergenic | 40.0% | |
| ! | AATTCGTTGGCTAGAATGTC+AGG | + | chr6_2:72332113-72332132 | Msa0927820:CDS | 40.0% |
| ! | ATTCGTTGGCTAGAATGTCA+GGG | + | chr6_2:72332114-72332133 | Msa0927820:CDS | 40.0% |
| !! | ATGGTTTAGTTTGAGGGCAA+CGG | + | chr6_2:72332173-72332192 | Msa0927820:CDS | 40.0% |
| ! | GAAGAAGTTCCTTTTCCGAC+CGG | - | chr6_2:72329089-72329108 | None:intergenic | 45.0% |
| TCGAAAAAAGTTTCCGGCCT+CGG | + | chr6_2:72329175-72329194 | Msa0927820:CDS | 45.0% | |
| TCAAGGAAGCAACTTCGCAA+GGG | + | chr6_2:72329208-72329227 | Msa0927820:CDS | 45.0% | |
| GCAGGTGGTACAAATCGAAT+AGG | - | chr6_2:72329241-72329260 | None:intergenic | 45.0% | |
| TAATCAGAAGGAGGATCAGC+AGG | - | chr6_2:72329259-72329278 | None:intergenic | 45.0% | |
| GCTGATCCTCCTTCTGATTA+CGG | + | chr6_2:72329259-72329278 | Msa0927820:CDS | 45.0% | |
| GAATGTCCGTAATCAGAAGG+AGG | - | chr6_2:72329268-72329287 | None:intergenic | 45.0% | |
| CCTACAGAATGTGTCGTCTT+TGG | - | chr6_2:72329335-72329354 | None:intergenic | 45.0% | |
| CCAAAGACGACACATTCTGT+AGG | + | chr6_2:72329332-72329351 | Msa0927820:CDS | 45.0% | |
| AAGACGACACATTCTGTAGG+AGG | + | chr6_2:72329335-72329354 | Msa0927820:CDS | 45.0% | |
| ! | CAAGGATCCTAGTCTTTGGT+TGG | + | chr6_2:72329393-72329412 | Msa0927820:CDS | 45.0% |
| CTGCATACCAACCAAAGACT+AGG | - | chr6_2:72329403-72329422 | None:intergenic | 45.0% | |
| GCAAACAACAATAAGGGGGA+GGG | - | chr6_2:72329629-72329648 | None:intergenic | 45.0% | |
| AGCAAACAACAATAAGGGGG+AGG | - | chr6_2:72329630-72329649 | None:intergenic | 45.0% | |
| TCTCAATAGCGCTGCTATAG+CGG | + | chr6_2:72329763-72329782 | Msa0927820:intron | 45.0% | |
| GATAGGGCGAGAATGTGAAA+AGG | - | chr6_2:72329959-72329978 | None:intergenic | 45.0% | |
| AAGGAACGTTACTGAGAGAG+AGG | - | chr6_2:72330055-72330074 | None:intergenic | 45.0% | |
| GTTCCTTCTCAGTCTCTAAC+AGG | + | chr6_2:72330068-72330087 | Msa0927820:intron | 45.0% | |
| GAAGGAGAATACAAACCCAG+TGG | - | chr6_2:72330254-72330273 | None:intergenic | 45.0% | |
| TTGAGCTTCAGGCTTCTGAA+CGG | + | chr6_2:72330507-72330526 | Msa0927820:CDS | 45.0% | |
| TGACATGGTACAAGAGGCAA+AGG | + | chr6_2:72330554-72330573 | Msa0927820:CDS | 45.0% | |
| ACAAGAGGCAAAGGCTAAAC+TGG | + | chr6_2:72330563-72330582 | Msa0927820:CDS | 45.0% | |
| GGCAAAGGCTAAACTGGAAA+AGG | + | chr6_2:72330569-72330588 | Msa0927820:CDS | 45.0% | |
| ! | AAGGAAGTTGGTCCTGTTGA+CGG | + | chr6_2:72330588-72330607 | Msa0927820:CDS | 45.0% |
| TCTGCACATCACTGGCAATA+GGG | - | chr6_2:72330653-72330672 | None:intergenic | 45.0% | |
| TTCTGCACATCACTGGCAAT+AGG | - | chr6_2:72330654-72330673 | None:intergenic | 45.0% | |
| ACAGAGTTTCTGCACATCAC+TGG | - | chr6_2:72330661-72330680 | None:intergenic | 45.0% | |
| GGATTCTGGATTGTCATCAG+TGG | - | chr6_2:72330718-72330737 | None:intergenic | 45.0% | |
| AATATTCTGTGCAAGGCTGG+AGG | - | chr6_2:72331360-72331379 | None:intergenic | 45.0% | |
| TATACAGATGTTGGCGACCA+TGG | + | chr6_2:72331397-72331416 | Msa0927820:CDS | 45.0% | |
| ACTTAGCCTCAGAATGACCA+TGG | - | chr6_2:72331417-72331436 | None:intergenic | 45.0% | |
| CAGGATGATACTGAAACTGG+AGG | + | chr6_2:72331502-72331521 | Msa0927820:CDS | 45.0% | |
| GATGATACTGAAACTGGAGG+AGG | + | chr6_2:72331505-72331524 | Msa0927820:CDS | 45.0% | |
| AATCCGGGGTAAGTCATTGA+GGG | - | chr6_2:72331562-72331581 | None:intergenic | 45.0% | |
| AATGACTTACCCCGGATTCA+AGG | + | chr6_2:72331564-72331583 | Msa0927820:CDS | 45.0% | |
| AAGGTCTCGAACCTTGAATC+CGG | - | chr6_2:72331578-72331597 | None:intergenic | 45.0% | |
| GTGAGTTCTTCGTTCAAGTC+AGG | - | chr6_2:72331772-72331791 | None:intergenic | 45.0% | |
| !! | CTCCTCCTTTTGAGTCTTCT+CGG | + | chr6_2:72331791-72331810 | Msa0927820:CDS | 45.0% |
| !! | TCCTCCTTTTGAGTCTTCTC+GGG | + | chr6_2:72331792-72331811 | Msa0927820:CDS | 45.0% |
| TCATCCCGAGAAGACTCAAA+AGG | - | chr6_2:72331799-72331818 | None:intergenic | 45.0% | |
| TCTTCTCGGGATGAAGACAA+TGG | + | chr6_2:72331805-72331824 | Msa0927820:CDS | 45.0% | |
| TTCGTTTGGTCTCCAGGTTT+CGG | - | chr6_2:72331923-72331942 | None:intergenic | 45.0% | |
| AACTTCTTCGTTTGGTCTCC+AGG | - | chr6_2:72331929-72331948 | None:intergenic | 45.0% | |
| ACAGCAGGAACTTCTTCGTT+TGG | - | chr6_2:72331937-72331956 | None:intergenic | 45.0% | |
| TACTTGCACCTACGACTATG+CGG | - | chr6_2:72331966-72331985 | None:intergenic | 45.0% | |
| TCTAAGGAGAACGAACCATC+GGG | - | chr6_2:72332066-72332085 | None:intergenic | 45.0% | |
| GATCGATGATCCGAGTAGTT+TGG | + | chr6_2:72332236-72332255 | Msa0927820:CDS | 45.0% | |
| AGTTGACCTGCCAAACTACT+CGG | - | chr6_2:72332249-72332268 | None:intergenic | 45.0% | |
| TCCAACAAGAGGGCAAGAAA+TGG | + | chr6_2:72332294-72332313 | Msa0927820:CDS | 45.0% | |
| TCCATTTCTTGCCCTCTTGT+TGG | - | chr6_2:72332298-72332317 | None:intergenic | 45.0% | |
| !! | TTCTGAAGTCCGGTCGGAAA+AGG | + | chr6_2:72329077-72329096 | Msa0927820:five_prime_UTR | 50.0% |
| CTCAAGGAAGCAACTTCGCA+AGG | + | chr6_2:72329207-72329226 | Msa0927820:CDS | 50.0% | |
| CAAGGAAGCAACTTCGCAAG+GGG | + | chr6_2:72329209-72329228 | Msa0927820:CDS | 50.0% | |
| AAGGAAGCAACTTCGCAAGG+GGG | + | chr6_2:72329210-72329229 | Msa0927820:CDS | 50.0% | |
| TCTTCTCAAGGGGACTCATG+TGG | + | chr6_2:72329427-72329446 | Msa0927820:CDS | 50.0% | |
| GGACAGCTGATGCAACTTGA+TGG | + | chr6_2:72329508-72329527 | Msa0927820:CDS | 50.0% | |
| CAGCTGATGCAACTTGATGG+TGG | + | chr6_2:72329511-72329530 | Msa0927820:CDS | 50.0% | |
| GGTTATTGTTGTGCCTCCTG+CGG | + | chr6_2:72329532-72329551 | Msa0927820:CDS | 50.0% | |
| TCCAGTAACTTTACCGCAGG+AGG | - | chr6_2:72329548-72329567 | None:intergenic | 50.0% | |
| ACAACAATAAGGGGGAGGGA+GGG | - | chr6_2:72329625-72329644 | None:intergenic | 50.0% | |
| AACAACAATAAGGGGGAGGG+AGG | - | chr6_2:72329626-72329645 | None:intergenic | 50.0% | |
| TTGGAAGCCTAAGGATGCCA+TGG | + | chr6_2:72329849-72329868 | Msa0927820:intron | 50.0% | |
| GAAGAGGGAAGCTGCGATTA+GGG | - | chr6_2:72330014-72330033 | None:intergenic | 50.0% | |
| ! | ATTGGGCTAGATCTGCCACT+GGG | + | chr6_2:72330236-72330255 | Msa0927820:intron | 50.0% |
| TTGGAAGAACCACCGTCAAC+AGG | - | chr6_2:72330603-72330622 | None:intergenic | 50.0% | |
| TGACGGTGGTTCTTCCAAGA+TGG | + | chr6_2:72330605-72330624 | Msa0927820:CDS | 50.0% | |
| GGTTCTTCCAAGATGGTACG+TGG | + | chr6_2:72330612-72330631 | Msa0927820:CDS | 50.0% | |
| GACAATGCCACGTACCATCT+TGG | - | chr6_2:72330622-72330641 | None:intergenic | 50.0% | |
| !!! | AAGCTCCTTTTGGCTCACAG+AGG | + | chr6_2:72331132-72331151 | Msa0927820:intron | 50.0% |
| !!! | AGCTCCTTTTGGCTCACAGA+GGG | + | chr6_2:72331133-72331152 | Msa0927820:intron | 50.0% |
| TGAACCCTCTGTGAGCCAAA+AGG | - | chr6_2:72331140-72331159 | None:intergenic | 50.0% | |
| AACACAAACTTGCAGGCAGC+AGG | - | chr6_2:72331166-72331185 | None:intergenic | 50.0% | |
| TGAGGGATCGATCTCCAGTT+TGG | - | chr6_2:72331545-72331564 | None:intergenic | 50.0% | |
| GATCCCTCAATGACTTACCC+CGG | + | chr6_2:72331556-72331575 | Msa0927820:CDS | 50.0% | |
| GAATCCGGGGTAAGTCATTG+AGG | - | chr6_2:72331563-72331582 | None:intergenic | 50.0% | |
| AGGTCTCGAACCTTGAATCC+GGG | - | chr6_2:72331577-72331596 | None:intergenic | 50.0% | |
| GGATTCAAGGTTCGAGACCT+TGG | + | chr6_2:72331577-72331596 | Msa0927820:CDS | 50.0% | |
| CTTGTTCTTGAGCCCAAGCA+AGG | - | chr6_2:72331615-72331634 | None:intergenic | 50.0% | |
| CTTGCTTGGGCTCAAGAACA+AGG | + | chr6_2:72331613-72331632 | Msa0927820:CDS | 50.0% | |
| TCAAGAACAAGGCTGCCTTG+AGG | + | chr6_2:72331624-72331643 | Msa0927820:CDS | 50.0% | |
| CAAGAACAAGGCTGCCTTGA+GGG | + | chr6_2:72331625-72331644 | Msa0927820:CDS | 50.0% | |
| AAGAACAAGGCTGCCTTGAG+GGG | + | chr6_2:72331626-72331645 | Msa0927820:CDS | 50.0% | |
| AACGATCAAGCCTAGCCATC+CGG | + | chr6_2:72331690-72331709 | Msa0927820:CDS | 50.0% | |
| ! | AAATGCACCGATCGCTCTTC+CGG | - | chr6_2:72331712-72331731 | None:intergenic | 50.0% |
| TCCCGAGAAGACTCAAAAGG+AGG | - | chr6_2:72331796-72331815 | None:intergenic | 50.0% | |
| CAATGGTTGCACTTTGCAGC+AGG | + | chr6_2:72331822-72331841 | Msa0927820:CDS | 50.0% | |
| CTAGCAAGACCACATGGTAG+CGG | + | chr6_2:72331892-72331911 | Msa0927820:CDS | 50.0% | |
| ACTTGCACCTACGACTATGC+GGG | - | chr6_2:72331965-72331984 | None:intergenic | 50.0% | |
| GCATAGTCGTAGGTGCAAGT+AGG | + | chr6_2:72331965-72331984 | Msa0927820:CDS | 50.0% | |
| TCTCCTTTACATGCACCCGA+TGG | + | chr6_2:72332048-72332067 | Msa0927820:CDS | 50.0% | |
| GAACCATCGGGTGCATGTAA+AGG | - | chr6_2:72332054-72332073 | None:intergenic | 50.0% | |
| GATGATCCGAGTAGTTTGGC+AGG | + | chr6_2:72332240-72332259 | Msa0927820:CDS | 50.0% | |
| !! | TCCTTGAGCACTGATTGCCG+AGG | - | chr6_2:72329195-72329214 | None:intergenic | 55.0% |
| TCAGAAGGAGGATCAGCAGG+TGG | - | chr6_2:72329256-72329275 | None:intergenic | 55.0% | |
| GCCTCCTGCGGTAAAGTTAC+TGG | + | chr6_2:72329544-72329563 | Msa0927820:CDS | 55.0% | |
| ! | TGGGGTACCATGGCATCCTT+AGG | - | chr6_2:72329859-72329878 | None:intergenic | 55.0% |
| GATGAGAACGCGGCGTGATA+GGG | - | chr6_2:72329975-72329994 | None:intergenic | 55.0% | |
| AGATGAGAACGCGGCGTGAT+AGG | - | chr6_2:72329976-72329995 | None:intergenic | 55.0% | |
| GCGAGAGTGAGATGAGAACG+CGG | - | chr6_2:72329985-72330004 | None:intergenic | 55.0% | |
| GGAAGAGGGAAGCTGCGATT+AGG | - | chr6_2:72330015-72330034 | None:intergenic | 55.0% | |
| TTCCCTCTTCCTCTCAGTCG+CGG | + | chr6_2:72330024-72330043 | Msa0927820:intron | 55.0% | |
| ! | GATTGGGCTAGATCTGCCAC+TGG | + | chr6_2:72330235-72330254 | Msa0927820:intron | 55.0% |
| ! | GAAGTTGGTCCTGTTGACGG+TGG | + | chr6_2:72330591-72330610 | Msa0927820:CDS | 55.0% |
| TGGTACGTGGCATTGTCAGC+AGG | + | chr6_2:72330625-72330644 | Msa0927820:CDS | 55.0% | |
| TGGCGACCATGGTCATTCTG+AGG | + | chr6_2:72331408-72331427 | Msa0927820:CDS | 55.0% | |
| AACTGGAGGAGGCAGTGAAC+CGG | + | chr6_2:72331516-72331535 | Msa0927820:CDS | 55.0% | |
| ! | TCGATCTCCAGTTTGGAGCC+CGG | - | chr6_2:72331538-72331557 | None:intergenic | 55.0% |
| GGTCTCGAACCTTGAATCCG+GGG | - | chr6_2:72331576-72331595 | None:intergenic | 55.0% | |
| TAGCCATCCGGAAGAGCGAT+CGG | + | chr6_2:72331702-72331721 | Msa0927820:CDS | 55.0% | |
| GGAAGAGCGATCGGTGCATT+TGG | + | chr6_2:72331711-72331730 | Msa0927820:CDS | 55.0% | |
| CACTTTGCAGCAGGCTGTTG+AGG | + | chr6_2:72331831-72331850 | Msa0927820:CDS | 55.0% | |
| ! | CGCTACCATGTGGTCTTGCT+AGG | - | chr6_2:72331894-72331913 | None:intergenic | 55.0% |
| ACTATGCGGGAGTCAACAGC+AGG | - | chr6_2:72331952-72331971 | None:intergenic | 55.0% | |
| ! | GTTGACTCCCGCATAGTCGT+AGG | + | chr6_2:72331955-72331974 | Msa0927820:CDS | 55.0% |
| ! | GGCAACGGAACAAGAGCGTA+GGG | + | chr6_2:72332188-72332207 | Msa0927820:CDS | 55.0% |
| ! | AACGGAACAAGAGCGTAGGG+TGG | + | chr6_2:72332191-72332210 | Msa0927820:CDS | 55.0% |
| !! | TGAGCACTGATTGCCGAGGC+CGG | - | chr6_2:72329191-72329210 | None:intergenic | 60.0% |
| GCCTCGGCAATCAGTGCTCA+AGG | + | chr6_2:72329191-72329210 | Msa0927820:CDS | 60.0% | |
| !! | GCTGCTATAGCGGTGTTGCG+TGG | + | chr6_2:72329773-72329792 | Msa0927820:intron | 60.0% |
| ! | TAGAGCGCTTCACGGGCCTA+CGG | - | chr6_2:72329822-72329841 | None:intergenic | 60.0% |
| AGCGAAAGATGCTCGGCGTG+TGG | + | chr6_2:72330461-72330480 | Msa0927820:CDS | 60.0% | |
| ACTGGAGGAGGCAGTGAACC+GGG | + | chr6_2:72331517-72331536 | Msa0927820:CDS | 60.0% | |
| CAGTGAACCGGGCTCCAAAC+TGG | + | chr6_2:72331528-72331547 | Msa0927820:CDS | 60.0% | |
| GATCGCTCTTCCGGATGGCT+AGG | - | chr6_2:72331703-72331722 | None:intergenic | 60.0% | |
| !! | GCAAGACCACATGGTAGCGG+TGG | + | chr6_2:72331895-72331914 | Msa0927820:CDS | 60.0% |
| TCGGAACCACCGCTACCATG+TGG | - | chr6_2:72331904-72331923 | None:intergenic | 60.0% | |
| GTAGCGGTGGTTCCGAAACC+TGG | + | chr6_2:72331908-72331927 | Msa0927820:CDS | 60.0% | |
| ! | GGGCAACGGAACAAGAGCGT+AGG | + | chr6_2:72332187-72332206 | Msa0927820:CDS | 60.0% |
| !! | AGCGGTGTTGCGTGGCAGTG+TGG | + | chr6_2:72329781-72329800 | Msa0927820:intron | 65.0% |
| CGCCGCGACTGAGAGGAAGA+GGG | - | chr6_2:72330029-72330048 | None:intergenic | 65.0% | |
| ACGCCGCGACTGAGAGGAAG+AGG | - | chr6_2:72330030-72330049 | None:intergenic | 65.0% | |
| GAGGAAACGCCGCGACTGAG+AGG | - | chr6_2:72330036-72330055 | None:intergenic | 65.0% | |
| CGGCACGGCAAAACCCCTCA+AGG | - | chr6_2:72331642-72331661 | None:intergenic | 65.0% | |
| ! | GCACCGATCGCTCTTCCGGA+TGG | - | chr6_2:72331708-72331727 | None:intergenic | 65.0% |
| GTGGCAGTGTGGCCCTGCAC+TGG | + | chr6_2:72329792-72329811 | Msa0927820:intron | 70.0% | |
| GCCTACGGCGTGCCAGTGCA+GGG | - | chr6_2:72329807-72329826 | None:intergenic | 70.0% | |
| ! | GCCCTGCACTGGCACGCCGT+AGG | + | chr6_2:72329803-72329822 | Msa0927820:intron | 75.0% |
| GGCCTACGGCGTGCCAGTGC+AGG | - | chr6_2:72329808-72329827 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 72328887 | 72332347 | 72328887 | ID=Msa0927820;Name=Msa0927820 |
| chr6_2 | mRNA | 72328887 | 72332347 | 72328887 | ID=Msa0927820-mRNA-1;Parent=Msa0927820;Name=Msa0927820-mRNA-1;_AED=0.12;_eAED=0.12;_QI=267|0.5|0.66|1|1|1|3|0|627 |
| chr6_2 | exon | 72328887 | 72329575 | 72328887 | ID=Msa0927820-mRNA-1:exon:12227;Parent=Msa0927820-mRNA-1 |
| chr6_2 | exon | 72330437 | 72330741 | 72330437 | ID=Msa0927820-mRNA-1:exon:12228;Parent=Msa0927820-mRNA-1 |
| chr6_2 | exon | 72331191 | 72332347 | 72331191 | ID=Msa0927820-mRNA-1:exon:12229;Parent=Msa0927820-mRNA-1 |
| chr6_2 | five_prime_UTR | 72328887 | 72329153 | 72328887 | ID=Msa0927820-mRNA-1:five_prime_utr;Parent=Msa0927820-mRNA-1 |
| chr6_2 | CDS | 72329154 | 72329575 | 72329154 | ID=Msa0927820-mRNA-1:cds;Parent=Msa0927820-mRNA-1 |
| chr6_2 | CDS | 72330437 | 72330741 | 72330437 | ID=Msa0927820-mRNA-1:cds;Parent=Msa0927820-mRNA-1 |
| chr6_2 | CDS | 72331191 | 72332347 | 72331191 | ID=Msa0927820-mRNA-1:cds;Parent=Msa0927820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
