Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0985420 | XP_013453052.1 | 96.875 | 640 | 6 | 2 | 1 | 627 | 1 | 639 | 0.0 | 1269 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0985420 | sp|Q9LHF5|VIL1_ARATH | 47.987 | 596 | 244 | 15 | 46 | 618 | 45 | 597 | 5.54e-172 | 505 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0985420 | A0A072UMI5 | 96.875 | 640 | 6 | 2 | 1 | 627 | 1 | 639 | 0.0 | 1269 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032370 | Msa0985420 | 0.810279 | 1.247259e-50 | -8.615850e-47 |
| Msa0064110 | Msa0985420 | 0.811568 | 6.561371e-51 | -8.615850e-47 |
| Msa0657750 | Msa0985420 | 0.801172 | 1.020654e-48 | -8.615850e-47 |
| Msa0689760 | Msa0985420 | 0.815847 | 7.494154e-52 | -8.615850e-47 |
| Msa0691050 | Msa0985420 | 0.823939 | 1.057085e-53 | -8.615850e-47 |
| Msa0702350 | Msa0985420 | 0.801687 | 8.004754e-49 | -8.615850e-47 |
| Msa0702570 | Msa0985420 | 0.809928 | 1.484857e-50 | -8.615850e-47 |
| Msa0716860 | Msa0985420 | 0.808516 | 2.980691e-50 | -8.615850e-47 |
| Msa0757800 | Msa0985420 | 0.809081 | 2.256342e-50 | -8.615850e-47 |
| Msa0828920 | Msa0985420 | 0.800906 | 1.156644e-48 | -8.615850e-47 |
| Msa0123100 | Msa0985420 | 0.820037 | 8.473146e-53 | -8.615850e-47 |
| Msa0138210 | Msa0985420 | 0.800134 | 1.661685e-48 | -8.615850e-47 |
| Msa0144360 | Msa0985420 | 0.802670 | 5.026062e-49 | -8.615850e-47 |
| Msa0205850 | Msa0985420 | 0.810315 | 1.225601e-50 | -8.615850e-47 |
| Msa0436370 | Msa0985420 | 0.804629 | 1.970599e-49 | -8.615850e-47 |
| Msa0985420 | Msa1080960 | 0.806301 | 8.793282e-50 | -8.615850e-47 |
| Msa0985420 | Msa1147900 | 0.801206 | 1.004394e-48 | -8.615850e-47 |
| Msa0985420 | Msa1179940 | 0.800309 | 1.530840e-48 | -8.615850e-47 |
| Msa0985420 | Msa1179970 | 0.803295 | 3.731174e-49 | -8.615850e-47 |
| Msa0985420 | Msa1199830 | -0.802386 | 5.749745e-49 | -8.615850e-47 |
| Msa0985420 | Msa1224830 | 0.805209 | 1.491083e-49 | -8.615850e-47 |
| Msa0985420 | Msa1332000 | 0.801798 | 7.596290e-49 | -8.615850e-47 |
| Msa0985420 | Msa1379850 | 0.803088 | 4.119562e-49 | -8.615850e-47 |
| Msa0985420 | Msa1420250 | 0.815088 | 1.105907e-51 | -8.615850e-47 |
| Msa0985420 | Msa1423880 | 0.808350 | 3.234349e-50 | -8.615850e-47 |
| Msa0985420 | Msa1448640 | 0.806341 | 8.622992e-50 | -8.615850e-47 |
| Msa0245940 | Msa0985420 | 0.830637 | 2.625164e-55 | -8.615850e-47 |
| Msa0284520 | Msa0985420 | 0.831704 | 1.435616e-55 | -8.615850e-47 |
| Msa0287310 | Msa0985420 | 0.803783 | 2.956486e-49 | -8.615850e-47 |
| Msa0325850 | Msa0985420 | 0.804381 | 2.219907e-49 | -8.615850e-47 |
| Msa0873860 | Msa0985420 | 0.804463 | 2.134384e-49 | -8.615850e-47 |
| Msa0908050 | Msa0985420 | 0.822062 | 2.895783e-53 | -8.615850e-47 |
| Msa0910440 | Msa0985420 | 0.808195 | 3.488668e-50 | -8.615850e-47 |
| Msa0927750 | Msa0985420 | 0.876983 | 9.047788e-69 | -8.615850e-47 |
| Msa0927820 | Msa0985420 | 0.882645 | 8.755470e-71 | -8.615850e-47 |
| Msa0932350 | Msa0985420 | 0.812922 | 3.322894e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0985420 | MtrunA17_Chr6g0485041 | 96.875 | 640 | 6 | 2 | 1 | 627 | 1 | 639 | 0.0 | 1269 |
| Msa0985420 | MtrunA17_Chr4g0072251 | 45.253 | 316 | 146 | 5 | 21 | 311 | 109 | 422 | 4.36e-81 | 270 |
| Msa0985420 | MtrunA17_Chr4g0072251 | 60.759 | 79 | 30 | 1 | 537 | 615 | 641 | 718 | 4.31e-23 | 104 |
| Msa0985420 | MtrunA17_Chr5g0427611 | 39.590 | 293 | 164 | 4 | 47 | 327 | 139 | 430 | 1.73e-64 | 223 |
| Msa0985420 | MtrunA17_Chr5g0427611 | 57.143 | 70 | 30 | 0 | 541 | 610 | 518 | 587 | 2.19e-20 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0985420 | AT3G24440.2 | 47.980 | 594 | 245 | 14 | 46 | 618 | 45 | 595 | 1.82e-173 | 506 |
| Msa0985420 | AT3G24440.1 | 47.987 | 596 | 244 | 15 | 46 | 618 | 45 | 597 | 5.64e-173 | 505 |
| Msa0985420 | AT5G57380.2 | 43.253 | 289 | 143 | 5 | 50 | 327 | 110 | 388 | 1.45e-67 | 231 |
| Msa0985420 | AT5G57380.2 | 52.000 | 75 | 36 | 0 | 541 | 615 | 510 | 584 | 3.50e-16 | 82.4 |
| Msa0985420 | AT5G57380.1 | 43.253 | 289 | 143 | 5 | 50 | 327 | 130 | 408 | 1.63e-67 | 232 |
| Msa0985420 | AT5G57380.1 | 52.000 | 75 | 36 | 0 | 541 | 615 | 530 | 604 | 3.70e-16 | 82.4 |
| Msa0985420 | AT4G30200.1 | 39.237 | 367 | 178 | 7 | 4 | 331 | 73 | 433 | 2.49e-61 | 216 |
| Msa0985420 | AT4G30200.1 | 55.172 | 87 | 37 | 1 | 532 | 618 | 583 | 667 | 4.06e-22 | 101 |
| Msa0985420 | AT4G30200.3 | 39.237 | 367 | 178 | 7 | 4 | 331 | 90 | 450 | 4.56e-61 | 216 |
| Msa0985420 | AT4G30200.3 | 55.172 | 87 | 37 | 1 | 532 | 618 | 600 | 684 | 4.05e-22 | 101 |
| Msa0985420 | AT4G30200.4 | 37.995 | 379 | 178 | 7 | 4 | 331 | 90 | 462 | 3.61e-60 | 212 |
| Msa0985420 | AT4G30200.2 | 37.995 | 379 | 178 | 7 | 4 | 331 | 90 | 462 | 2.77e-59 | 211 |
| Msa0985420 | AT4G30200.2 | 55.172 | 87 | 37 | 1 | 532 | 618 | 612 | 696 | 4.03e-22 | 101 |
| Msa0985420 | AT2G18880.1 | 38.225 | 293 | 169 | 6 | 50 | 331 | 119 | 410 | 5.64e-51 | 185 |
| Msa0985420 | AT2G18880.1 | 50.667 | 75 | 37 | 0 | 544 | 618 | 440 | 514 | 7.10e-17 | 84.3 |
| Msa0985420 | AT2G18870.1 | 51.648 | 91 | 41 | 1 | 526 | 613 | 123 | 213 | 1.09e-18 | 86.3 |
Find 170 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTTCCAACCTTTGGATTC+TGG | 0.204447 | 6_4:-31922661 | None:intergenic |
| AAAATCCTCCTCTGATCTTT+TGG | 0.225978 | 6_4:-31923266 | None:intergenic |
| CGTAACTTCTGAGGACATTA+AGG | 0.258985 | 6_4:+31923178 | Msa0985420:CDS |
| CACCAAAAGCGTTGAGATAT+TGG | 0.279016 | 6_4:+31923382 | Msa0985420:CDS |
| TACCAATATCTCAACGCTTT+TGG | 0.280459 | 6_4:-31923384 | None:intergenic |
| TAAAGGAGAACCGTTTATTA+AGG | 0.300683 | 6_4:-31923975 | None:intergenic |
| ATAGGATATATTTGAGCTTC+AGG | 0.301437 | 6_4:+31922428 | Msa0985420:CDS |
| TTCGTTTGGTCTCCAGGTTT+CGG | 0.314155 | 6_4:-31923861 | None:intergenic |
| CCTACAGAATGTGTCGTCTT+TGG | 0.328733 | 6_4:-31921264 | None:intergenic |
| AACTTCTTCGTTTGGTCTCC+AGG | 0.330854 | 6_4:-31923867 | None:intergenic |
| CAGGATGACTGAAAAGAAAA+AGG | 0.333304 | 6_4:+31921082 | Msa0985420:exon |
| TCCATTTCTTGCCCTCTTGT+TGG | 0.338773 | 6_4:-31924236 | None:intergenic |
| ACAAGAGGCAAAGGCTAAAC+TGG | 0.339079 | 6_4:+31922495 | Msa0985420:CDS |
| GCCTCCTGCGGTAAAGTTAC+TGG | 0.341604 | 6_4:+31921476 | Msa0985420:CDS |
| ATACTCAAAGTTCTCATCTA+AGG | 0.365083 | 6_4:-31924020 | None:intergenic |
| GGAAGAGCGATCGGTGCATT+TGG | 0.365367 | 6_4:+31923652 | Msa0985420:CDS |
| AATTGACATGAATGCTAAAC+AGG | 0.369248 | 6_4:+31923424 | Msa0985420:CDS |
| ATAACAAGGATCCTAGTCTT+TGG | 0.376232 | 6_4:+31921321 | Msa0985420:CDS |
| AATTCGTTGGCTAGAATGTC+AGG | 0.388611 | 6_4:+31924054 | Msa0985420:CDS |
| GATGAAGAGCACATTCAATA+TGG | 0.388919 | 6_4:-31921391 | None:intergenic |
| CAAGAACAAGGCTGCCTTGA+GGG | 0.391006 | 6_4:+31923566 | Msa0985420:CDS |
| CAGTGAACCGGGCTCCAAAC+TGG | 0.396392 | 6_4:+31923469 | Msa0985420:CDS |
| CACTTTGCAGCAGGCTGTTG+AGG | 0.405269 | 6_4:+31923772 | Msa0985420:CDS |
| GCAGGTGGTACAAATCGAAT+AGG | 0.405556 | 6_4:-31921170 | None:intergenic |
| TGTGGGATCGATCTCCAGTT+TGG | 0.407580 | 6_4:-31923483 | None:intergenic |
| ACAGCAGGAACTTCTTCGTT+TGG | 0.411595 | 6_4:-31923875 | None:intergenic |
| GATCGATGATCCGAGTAGTT+TGG | 0.412460 | 6_4:+31924177 | Msa0985420:CDS |
| AACTGGAGGAGGCAGTGAAC+CGG | 0.415572 | 6_4:+31923457 | Msa0985420:CDS |
| TGCTTACATGGTTTAGTTTG+AGG | 0.422999 | 6_4:+31924107 | Msa0985420:CDS |
| GTAACTTCTGAGGACATTAA+GGG | 0.426701 | 6_4:+31923179 | Msa0985420:CDS |
| GCTGATCCTCCTTCTGATTA+CGG | 0.427415 | 6_4:+31921191 | Msa0985420:CDS |
| AAACAGGATGATACTGAAAC+TGG | 0.428677 | 6_4:+31923440 | Msa0985420:CDS |
| GCTTACATGGTTTAGTTTGA+GGG | 0.431261 | 6_4:+31924108 | Msa0985420:CDS |
| TTCTGCACATCACTGGCAAT+AGG | 0.433169 | 6_4:-31922583 | None:intergenic |
| AAATGCACCGATCGCTCTTC+CGG | 0.433270 | 6_4:-31923650 | None:intergenic |
| GAAACAACAAGCAATTGATA+AGG | 0.439096 | 6_4:-31920903 | None:intergenic |
| TTCTGAAGTCCGGTCGGAAA+AGG | 0.439812 | 6_4:+31921009 | Msa0985420:five_prime_UTR |
| AAGGTCTCGAACCTTGAATC+CGG | 0.441293 | 6_4:-31923516 | None:intergenic |
| TCCAACAAGAGGGCAAGAAA+TGG | 0.444776 | 6_4:+31924235 | Msa0985420:CDS |
| TTGGAAGAACCACCGTCAAC+AGG | 0.444884 | 6_4:-31922532 | None:intergenic |
| GTGCTTGTCTTTATCAAAGC+AGG | 0.449057 | 6_4:-31921044 | None:intergenic |
| TGTGACAGCACCTTAATAAA+CGG | 0.450247 | 6_4:+31923965 | Msa0985420:CDS |
| ACATTAAGGGATTCAAACTA+TGG | 0.453105 | 6_4:+31923192 | Msa0985420:CDS |
| TCTGCACATCACTGGCAATA+GGG | 0.453195 | 6_4:-31922582 | None:intergenic |
| GACAATGCCACGTACCATCT+TGG | 0.453446 | 6_4:-31922551 | None:intergenic |
| ATTGTATCTTATACAGATGT+TGG | 0.454036 | 6_4:+31923329 | Msa0985420:CDS |
| AAGAATATTCTGTGCAAGGC+TGG | 0.454526 | 6_4:-31923301 | None:intergenic |
| GGATTCAAGGTTCGAGACCT+TGG | 0.456764 | 6_4:+31923518 | Msa0985420:CDS |
| CGCTACCATGTGGTCTTGCT+AGG | 0.457631 | 6_4:-31923832 | None:intergenic |
| GTGAGTTCTTCGTTCAAGTC+AGG | 0.459213 | 6_4:-31923710 | None:intergenic |
| CAATGGTTGCACTTTGCAGC+AGG | 0.460748 | 6_4:+31923763 | Msa0985420:CDS |
| ATGTCCTCAGAAGTTACGTT+TGG | 0.462457 | 6_4:-31923173 | None:intergenic |
| TTAGGCTGAAATTGCTTACA+TGG | 0.463255 | 6_4:+31924095 | Msa0985420:CDS |
| GTGTGGATGTACTATGCTAT+AGG | 0.467184 | 6_4:+31922410 | Msa0985420:CDS |
| GGCAAAGGCTAAACTGGAAA+AGG | 0.469157 | 6_4:+31922501 | Msa0985420:CDS |
| CTTCATAAGTTTCTGAAGTC+CGG | 0.469377 | 6_4:+31920999 | Msa0985420:five_prime_UTR |
| GTCATATGAAGAAAGAGTTT+AGG | 0.474263 | 6_4:+31924077 | Msa0985420:CDS |
| GTAGCGGTGGTTCCGAAACC+TGG | 0.474866 | 6_4:+31923849 | Msa0985420:CDS |
| AATGACTTACCCCGGATTCA+AGG | 0.475344 | 6_4:+31923505 | Msa0985420:CDS |
| AAACAACAAGCAATTGATAA+GGG | 0.477002 | 6_4:-31920902 | None:intergenic |
| AAAGTTGGAGTTGTTGATCA+TGG | 0.477180 | 6_4:+31921419 | Msa0985420:CDS |
| AGTGCTTTGAACATGAGAAC+TGG | 0.484299 | 6_4:-31920929 | None:intergenic |
| TCGATCTCCAGTTTGGAGCC+CGG | 0.491441 | 6_4:-31923476 | None:intergenic |
| AACGATCAAGCCTAGCCATC+CGG | 0.494565 | 6_4:+31923631 | Msa0985420:CDS |
| TGGTACGTGGCATTGTCAGC+AGG | 0.498805 | 6_4:+31922557 | Msa0985420:CDS |
| ATTACGGACATTCAAACTCC+TGG | 0.498965 | 6_4:+31921207 | Msa0985420:CDS |
| GGACAGCTGATGCAACTTGA+TGG | 0.502049 | 6_4:+31921440 | Msa0985420:CDS |
| TGAGCACTGATTGCCGAGGC+CGG | 0.504332 | 6_4:-31921120 | None:intergenic |
| GCACATTTCTTCAGAAAAGC+AGG | 0.504952 | 6_4:+31921063 | Msa0985420:five_prime_UTR |
| GATCGCTCTTCCGGATGGCT+AGG | 0.507299 | 6_4:-31923641 | None:intergenic |
| GGTAAAGTTACTGGAATACT+TGG | 0.508656 | 6_4:+31921485 | Msa0985420:CDS |
| GAACCATCGGGTGCATGTAA+AGG | 0.509944 | 6_4:-31923992 | None:intergenic |
| AGGTCTCGAACCTTGAATCC+GGG | 0.512295 | 6_4:-31923515 | None:intergenic |
| AAGGAAGTTGGTCCTGTTGA+CGG | 0.515182 | 6_4:+31922520 | Msa0985420:CDS |
| TAAATATAGCGAAAGATGCT+CGG | 0.525599 | 6_4:+31922386 | Msa0985420:CDS |
| CTCAAGGAAGCAACTTCGCA+AGG | 0.525647 | 6_4:+31921139 | Msa0985420:CDS |
| ACTATGGTATTACAAGACTA+GGG | 0.525868 | 6_4:+31923208 | Msa0985420:CDS |
| AGCGAAAGATGCTCGGCGTG+TGG | 0.526435 | 6_4:+31922393 | Msa0985420:CDS |
| CAGGTGGTACAAATCGAATA+GGG | 0.533496 | 6_4:-31921169 | None:intergenic |
| TGGATTCAATAACAAGGTTG+TGG | 0.533711 | 6_4:+31924255 | Msa0985420:CDS |
| CAGAAACAACATTCAGATCA+AGG | 0.533858 | 6_4:-31923685 | None:intergenic |
| TCTAAGGAGAACGAACCATC+GGG | 0.533883 | 6_4:-31924004 | None:intergenic |
| CATCAGCTTTCTCAATAGCA+AGG | 0.536745 | 6_4:-31922615 | None:intergenic |
| ACAGAGTTTCTGCACATCAC+TGG | 0.537538 | 6_4:-31922590 | None:intergenic |
| TAATCAGAAGGAGGATCAGC+AGG | 0.538096 | 6_4:-31921188 | None:intergenic |
| GCCTCGGCAATCAGTGCTCA+AGG | 0.540279 | 6_4:+31921123 | Msa0985420:CDS |
| CGAAAAGAATATTCTGTGCA+AGG | 0.542417 | 6_4:-31923305 | None:intergenic |
| CTATTGAGAAAGCTGATGAA+TGG | 0.543260 | 6_4:+31922620 | Msa0985420:CDS |
| TATACAGATGTTGGCGACCA+TGG | 0.544516 | 6_4:+31923338 | Msa0985420:CDS |
| CCATCTCTTCGATGATAACA+AGG | 0.545578 | 6_4:+31921307 | Msa0985420:CDS |
| CAAGGATCCTAGTCTTTGGT+TGG | 0.547359 | 6_4:+31921325 | Msa0985420:CDS |
| ATTGTGTTAAAGTAATTCGT+TGG | 0.547857 | 6_4:+31924041 | Msa0985420:CDS |
| CTTGCTTGGGCTCAAGAACA+AGG | 0.549129 | 6_4:+31923554 | Msa0985420:CDS |
| GCTAAACTGGAAAAGGAAGT+TGG | 0.550877 | 6_4:+31922508 | Msa0985420:CDS |
| AATCCGGGGTAAGTCATTGT+GGG | 0.553208 | 6_4:-31923500 | None:intergenic |
| CTGCATACCAACCAAAGACT+AGG | 0.554285 | 6_4:-31921332 | None:intergenic |
| ATGGTTTAGTTTGAGGGCAA+CGG | 0.555090 | 6_4:+31924114 | Msa0985420:CDS |
| TCATCCCGAGAAGACTCAAA+AGG | 0.555122 | 6_4:-31923737 | None:intergenic |
| TTCTCATGTTCAAAGCACTC+TGG | 0.555151 | 6_4:+31920933 | Msa0985420:five_prime_UTR |
| AACTATGGTATTACAAGACT+AGG | 0.555562 | 6_4:+31923207 | Msa0985420:CDS |
| ACTGGAGGAGGCAGTGAACC+GGG | 0.555883 | 6_4:+31923458 | Msa0985420:CDS |
| GGATTCTGGATTGTCATCAG+TGG | 0.556540 | 6_4:-31922647 | None:intergenic |
| GATGATCCGAGTAGTTTGGC+AGG | 0.560501 | 6_4:+31924181 | Msa0985420:CDS |
| CTGATATTATATCCAACAAG+AGG | 0.561241 | 6_4:+31924224 | Msa0985420:CDS |
| CTTGTTCTTGAGCCCAAGCA+AGG | 0.563534 | 6_4:-31923553 | None:intergenic |
| TATTCCAGTAACTTTACCGC+AGG | 0.566806 | 6_4:-31921480 | None:intergenic |
| ATCTAAGGAGAACGAACCAT+CGG | 0.568116 | 6_4:-31924005 | None:intergenic |
| AGTTGACCTGCCAAACTACT+CGG | 0.568871 | 6_4:-31924187 | None:intergenic |
| GAATCCGGGGTAAGTCATTG+TGG | 0.569331 | 6_4:-31923501 | None:intergenic |
| TCCAGTAACTTTACCGCAGG+AGG | 0.569932 | 6_4:-31921477 | None:intergenic |
| CCTTGTTATCATCGAAGAGA+TGG | 0.571222 | 6_4:-31921307 | None:intergenic |
| ATCAGCTTTCTCAATAGCAA+GGG | 0.571702 | 6_4:-31922614 | None:intergenic |
| AAGAACAAGGCTGCCTTGAG+GGG | 0.571814 | 6_4:+31923567 | Msa0985420:CDS |
| TAGCCATCCGGAAGAGCGAT+CGG | 0.577859 | 6_4:+31923643 | Msa0985420:CDS |
| GTATGCAGTGAATCTTCTCA+AGG | 0.582388 | 6_4:+31921347 | Msa0985420:CDS |
| GGCAACGGAACAAGAGCGTA+GGG | 0.584349 | 6_4:+31924129 | Msa0985420:CDS |
| GTGTGTTTCCAAAAGATCAG+AGG | 0.586881 | 6_4:+31923258 | Msa0985420:CDS |
| TGACATGGTACAAGAGGCAA+AGG | 0.592745 | 6_4:+31922486 | Msa0985420:CDS |
| TGACGGTGGTTCTTCCAAGA+TGG | 0.594589 | 6_4:+31922537 | Msa0985420:CDS |
| GTTGACTCCCGCATAGTCGT+AGG | 0.596566 | 6_4:+31923896 | Msa0985420:CDS |
| TCTCCTTTACATGCACCCGA+TGG | 0.598572 | 6_4:+31923989 | Msa0985420:CDS |
| TTCATGTCAATTGATGAAGT+CGG | 0.599447 | 6_4:-31923413 | None:intergenic |
| TCTTCTCAAGGGGACTCATG+TGG | 0.600895 | 6_4:+31921359 | Msa0985420:CDS |
| TGAGAAAGCTGATGAATGGT+TGG | 0.603762 | 6_4:+31922624 | Msa0985420:CDS |
| CGGACTTCAGAAACTTATGA+AGG | 0.607463 | 6_4:-31920998 | None:intergenic |
| CAAGGTGCAAAATCTTTCCA+AGG | 0.610341 | 6_4:-31923535 | None:intergenic |
| TCCTTGAGCACTGATTGCCG+AGG | 0.613500 | 6_4:-31921124 | None:intergenic |
| GGGCAACGGAACAAGAGCGT+AGG | 0.614096 | 6_4:+31924128 | Msa0985420:CDS |
| ATTGCATGACATGGTACAAG+AGG | 0.616726 | 6_4:+31922480 | Msa0985420:CDS |
| TGTTTCCAAAAGATCAGAGG+AGG | 0.617266 | 6_4:+31923261 | Msa0985420:CDS |
| AATGCCAAACGTAACTTCTG+AGG | 0.620213 | 6_4:+31923169 | Msa0985420:CDS |
| TTTGAATGTCCGTAATCAGA+AGG | 0.621485 | 6_4:-31921200 | None:intergenic |
| TGATATTATATCCAACAAGA+GGG | 0.623788 | 6_4:+31924225 | Msa0985420:CDS |
| ACTATGCGGGAGTCAACAGC+AGG | 0.624903 | 6_4:-31923890 | None:intergenic |
| TATGCAGTGAATCTTCTCAA+GGG | 0.633109 | 6_4:+31921348 | Msa0985420:CDS |
| TTGAGCTTCAGGCTTCTGAA+CGG | 0.633588 | 6_4:+31922439 | Msa0985420:CDS |
| GTAAAGTTACTGGAATACTT+GGG | 0.634259 | 6_4:+31921486 | Msa0985420:CDS |
| ACTTGCACCTACGACTATGC+GGG | 0.634727 | 6_4:-31923903 | None:intergenic |
| CTAGCAAGACCACATGGTAG+CGG | 0.635274 | 6_4:+31923833 | Msa0985420:CDS |
| ATAAGTTTCTGAAGTCCGGT+CGG | 0.635908 | 6_4:+31921003 | Msa0985420:five_prime_UTR |
| GCATAGTCGTAGGTGCAAGT+AGG | 0.636726 | 6_4:+31923906 | Msa0985420:CDS |
| CCAAAGACGACACATTCTGT+AGG | 0.639129 | 6_4:+31921264 | Msa0985420:CDS |
| AAGACGACACATTCTGTAGG+AGG | 0.639361 | 6_4:+31921267 | Msa0985420:CDS |
| ATGCAGTGAATCTTCTCAAG+GGG | 0.641363 | 6_4:+31921349 | Msa0985420:CDS |
| TCAAGAACAAGGCTGCCTTG+AGG | 0.643311 | 6_4:+31923565 | Msa0985420:CDS |
| AATATTCTGTGCAAGGCTGG+AGG | 0.643828 | 6_4:-31923298 | None:intergenic |
| ATTTAAAGAATTGCATGACA+TGG | 0.644214 | 6_4:+31922471 | Msa0985420:CDS |
| GGTCTCGAACCTTGAATCCG+GGG | 0.645521 | 6_4:-31923514 | None:intergenic |
| GATGATACTGAAACTGGAGG+AGG | 0.647232 | 6_4:+31923446 | Msa0985420:CDS |
| TCAAGGAAGCAACTTCGCAA+GGG | 0.652462 | 6_4:+31921140 | Msa0985420:CDS |
| GCAAGACCACATGGTAGCGG+TGG | 0.655229 | 6_4:+31923836 | Msa0985420:CDS |
| GGTTATTGTTGTGCCTCCTG+CGG | 0.655592 | 6_4:+31921464 | Msa0985420:CDS |
| GATGACAATCCAGAATCCAA+AGG | 0.656967 | 6_4:+31922652 | Msa0985420:CDS |
| GAAGTTGGTCCTGTTGACGG+TGG | 0.657973 | 6_4:+31922523 | Msa0985420:CDS |
| TGGCGACCATGGTCATTCTG+AGG | 0.659046 | 6_4:+31923349 | Msa0985420:CDS |
| GGTTCTTCCAAGATGGTACG+TGG | 0.663592 | 6_4:+31922544 | Msa0985420:CDS |
| TCCCGAGAAGACTCAAAAGG+AGG | 0.665620 | 6_4:-31923734 | None:intergenic |
| GAATGTCCGTAATCAGAAGG+AGG | 0.666170 | 6_4:-31921197 | None:intergenic |
| TACTTGCACCTACGACTATG+CGG | 0.668138 | 6_4:-31923904 | None:intergenic |
| CAGGATGATACTGAAACTGG+AGG | 0.670490 | 6_4:+31923443 | Msa0985420:CDS |
| GATCCCACAATGACTTACCC+CGG | 0.670801 | 6_4:+31923497 | Msa0985420:CDS |
| ATTCGTTGGCTAGAATGTCA+GGG | 0.682204 | 6_4:+31924055 | Msa0985420:CDS |
| AAGAAATGGATTCAATAACA+AGG | 0.687617 | 6_4:+31924249 | Msa0985420:CDS |
| TCTTCTCGGGATGAAGACAA+TGG | 0.691060 | 6_4:+31923746 | Msa0985420:CDS |
| TCGGAACCACCGCTACCATG+TGG | 0.691197 | 6_4:-31923842 | None:intergenic |
| CTATGGTATTACAAGACTAG+GGG | 0.692533 | 6_4:+31923209 | Msa0985420:CDS |
| TCAGAAGGAGGATCAGCAGG+TGG | 0.694739 | 6_4:-31921185 | None:intergenic |
| ACTTAGCCTCAGAATGACCA+TGG | 0.702405 | 6_4:-31923355 | None:intergenic |
| CAGCTGATGCAACTTGATGG+TGG | 0.702578 | 6_4:+31921443 | Msa0985420:CDS |
| AACGGAACAAGAGCGTAGGG+TGG | 0.711248 | 6_4:+31924132 | Msa0985420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAAAAAACTTTTTTTTATT+GGG | - | chr6_4:31921810-31921829 | None:intergenic | 10.0% |
| !!! | AAGAAAAAACTTTTTTTTAT+TGG | - | chr6_4:31921811-31921830 | None:intergenic | 10.0% |
| !! | TGTAGAAATAAAAAAAATTT+GGG | + | chr6_4:31922116-31922135 | Msa0985420:intron | 10.0% |
| !!! | GAAAAAACTTTTTTTTATTG+GGG | - | chr6_4:31921809-31921828 | None:intergenic | 15.0% |
| !!! | CTTTTTTCAGAAATAATAAT+AGG | + | chr6_4:31921834-31921853 | Msa0985420:intron | 15.0% |
| !! | CTGTAGAAATAAAAAAAATT+TGG | + | chr6_4:31922115-31922134 | Msa0985420:intron | 15.0% |
| !! | GTAGAAATAAAAAAAATTTG+GGG | + | chr6_4:31922117-31922136 | Msa0985420:intron | 15.0% |
| !!! | ATTTAGAACTTGATTTTTAT+CGG | + | chr6_4:31922311-31922330 | Msa0985420:intron | 15.0% |
| !!! | TTTTTTATTTCTACAGTTCA+GGG | - | chr6_4:31922111-31922130 | None:intergenic | 20.0% |
| !!! | TTTTTTTATTTCTACAGTTC+AGG | - | chr6_4:31922112-31922131 | None:intergenic | 20.0% |
| !! | TTTAATAAAATTACAGAAGC+TGG | + | chr6_4:31922353-31922372 | Msa0985420:intron | 20.0% |
| !!! | TTTGTTTTACTAACCATTAA+AGG | + | chr6_4:31922719-31922738 | Msa0985420:intron | 20.0% |
| !!! | TTGTTTTACTAACCATTAAA+GGG | + | chr6_4:31922720-31922739 | Msa0985420:intron | 20.0% |
| !! | TTAAAATCATCTGCAAAAAA+AGG | - | chr6_4:31922889-31922908 | None:intergenic | 20.0% |
| !!! | AAAAAATGTGATTTTCACTA+CGG | + | chr6_4:31922908-31922927 | Msa0985420:intron | 20.0% |
| !!! | GAGTTCTAAATTTGATTTAT+CGG | + | chr6_4:31923035-31923054 | Msa0985420:intron | 20.0% |
| ! | AAACAACAAGCAATTGATAA+GGG | - | chr6_4:31920905-31920924 | None:intergenic | 25.0% |
| !! | TATATTTTATTGGAAGCCTA+AGG | + | chr6_4:31921772-31921791 | Msa0985420:intron | 25.0% |
| ! | ATTTAAAGAATTGCATGACA+TGG | + | chr6_4:31922471-31922490 | Msa0985420:CDS | 25.0% |
| ! | AGAAAAAAGCTATAACAAAC+AGG | - | chr6_4:31922746-31922765 | None:intergenic | 25.0% |
| ! | ATTGTATCTTATACAGATGT+TGG | + | chr6_4:31923329-31923348 | Msa0985420:CDS | 25.0% |
| ! | ATTGTGTTAAAGTAATTCGT+TGG | + | chr6_4:31924041-31924060 | Msa0985420:CDS | 25.0% |
| ! | TGATATTATATCCAACAAGA+GGG | + | chr6_4:31924225-31924244 | Msa0985420:CDS | 25.0% |
| !! | AAGAAATGGATTCAATAACA+AGG | + | chr6_4:31924249-31924268 | Msa0985420:CDS | 25.0% |
| GAAACAACAAGCAATTGATA+AGG | - | chr6_4:31920906-31920925 | None:intergenic | 30.0% | |
| GTAAAGTTACTGGAATACTT+GGG | + | chr6_4:31921486-31921505 | Msa0985420:CDS | 30.0% | |
| ! | TTTCTGTGTTTCTACCATTA+AGG | + | chr6_4:31921611-31921630 | Msa0985420:intron | 30.0% |
| ! | ATAAAATATAGAGCGCTTCA+CGG | - | chr6_4:31921762-31921781 | None:intergenic | 30.0% |
| !! | TGAAGCGCTCTATATTTTAT+TGG | + | chr6_4:31921762-31921781 | Msa0985420:intron | 30.0% |
| !!! | TTTTTTTTATTGGGGTACCA+TGG | - | chr6_4:31921801-31921820 | None:intergenic | 30.0% |
| AAAAGGAAACATAAGACTGA+GGG | - | chr6_4:31921874-31921893 | None:intergenic | 30.0% | |
| ! | TGATTTTTATCGGATGACAT+TGG | + | chr6_4:31922321-31922340 | Msa0985420:intron | 30.0% |
| TAAATATAGCGAAAGATGCT+CGG | + | chr6_4:31922386-31922405 | Msa0985420:CDS | 30.0% | |
| ATAGGATATATTTGAGCTTC+AGG | + | chr6_4:31922428-31922447 | Msa0985420:CDS | 30.0% | |
| ! | TTAACATGATAAGCTCCTTT+TGG | + | chr6_4:31923063-31923082 | Msa0985420:intron | 30.0% |
| ACATTAAGGGATTCAAACTA+TGG | + | chr6_4:31923192-31923211 | Msa0985420:CDS | 30.0% | |
| AACTATGGTATTACAAGACT+AGG | + | chr6_4:31923207-31923226 | Msa0985420:CDS | 30.0% | |
| ACTATGGTATTACAAGACTA+GGG | + | chr6_4:31923208-31923227 | Msa0985420:CDS | 30.0% | |
| ! | CTTGCACAGAATATTCTTTT+CGG | + | chr6_4:31923306-31923325 | Msa0985420:CDS | 30.0% |
| TTCATGTCAATTGATGAAGT+CGG | - | chr6_4:31923416-31923435 | None:intergenic | 30.0% | |
| AATTGACATGAATGCTAAAC+AGG | + | chr6_4:31923424-31923443 | Msa0985420:CDS | 30.0% | |
| !!! | ACCACAGCAATTTTTTGTAT+CGG | - | chr6_4:31923603-31923622 | None:intergenic | 30.0% |
| ! | GTTTTTCTCTAAATCATGAG+AGG | - | chr6_4:31923813-31923832 | None:intergenic | 30.0% |
| TAAAGGAGAACCGTTTATTA+AGG | - | chr6_4:31923978-31923997 | None:intergenic | 30.0% | |
| ATACTCAAAGTTCTCATCTA+AGG | - | chr6_4:31924023-31924042 | None:intergenic | 30.0% | |
| GTCATATGAAGAAAGAGTTT+AGG | + | chr6_4:31924077-31924096 | Msa0985420:CDS | 30.0% | |
| CTGATATTATATCCAACAAG+AGG | + | chr6_4:31924224-31924243 | Msa0985420:CDS | 30.0% | |
| ! | TCAAAGCACTCTGGAAAAAA+TGG | + | chr6_4:31920942-31920961 | Msa0985420:five_prime_UTR | 35.0% |
| !! | CTTCATAAGTTTCTGAAGTC+CGG | + | chr6_4:31920999-31921018 | Msa0985420:five_prime_UTR | 35.0% |
| CAGGATGACTGAAAAGAAAA+AGG | + | chr6_4:31921082-31921101 | Msa0985420:exon | 35.0% | |
| AAGGACTCGAAAAAAGTTTC+CGG | + | chr6_4:31921101-31921120 | Msa0985420:CDS | 35.0% | |
| TTTGAATGTCCGTAATCAGA+AGG | - | chr6_4:31921203-31921222 | None:intergenic | 35.0% | |
| ! | ATAACAAGGATCCTAGTCTT+TGG | + | chr6_4:31921321-31921340 | Msa0985420:CDS | 35.0% |
| TATGCAGTGAATCTTCTCAA+GGG | + | chr6_4:31921348-31921367 | Msa0985420:CDS | 35.0% | |
| ! | GATGAAGAGCACATTCAATA+TGG | - | chr6_4:31921394-31921413 | None:intergenic | 35.0% |
| GCTCTTCATCATGAAAAAGT+TGG | + | chr6_4:31921404-31921423 | Msa0985420:CDS | 35.0% | |
| AAAGTTGGAGTTGTTGATCA+TGG | + | chr6_4:31921419-31921438 | Msa0985420:CDS | 35.0% | |
| GGTAAAGTTACTGGAATACT+TGG | + | chr6_4:31921485-31921504 | Msa0985420:CDS | 35.0% | |
| AACAGCAAACAACAATAAGG+GGG | - | chr6_4:31921565-31921584 | None:intergenic | 35.0% | |
| CAACAGCAAACAACAATAAG+GGG | - | chr6_4:31921566-31921585 | None:intergenic | 35.0% | |
| CCAACAGCAAACAACAATAA+GGG | - | chr6_4:31921567-31921586 | None:intergenic | 35.0% | |
| ACCAACAGCAAACAACAATA+AGG | - | chr6_4:31921568-31921587 | None:intergenic | 35.0% | |
| TCACATGTATCGTTCCTTAA+TGG | - | chr6_4:31921628-31921647 | None:intergenic | 35.0% | |
| TTGAGACAACATACATCAAC+TGG | - | chr6_4:31921681-31921700 | None:intergenic | 35.0% | |
| ! | TAAAATATAGAGCGCTTCAC+GGG | - | chr6_4:31921761-31921780 | None:intergenic | 35.0% |
| GAAAAGGAAACATAAGACTG+AGG | - | chr6_4:31921875-31921894 | None:intergenic | 35.0% | |
| ACGTTGTAGGTGAAATTGAT+TGG | + | chr6_4:31922150-31922169 | Msa0985420:intron | 35.0% | |
| CGTTGTAGGTGAAATTGATT+GGG | + | chr6_4:31922151-31922170 | Msa0985420:intron | 35.0% | |
| TCAAACAGAAACAGAAAGGA+AGG | - | chr6_4:31922204-31922223 | None:intergenic | 35.0% | |
| GAACTCAAACAGAAACAGAA+AGG | - | chr6_4:31922208-31922227 | None:intergenic | 35.0% | |
| ! | CTGTTTGAGTTCTTCTTTCT+TGG | + | chr6_4:31922216-31922235 | Msa0985420:intron | 35.0% |
| ATCAGCTTTCTCAATAGCAA+GGG | - | chr6_4:31922617-31922636 | None:intergenic | 35.0% | |
| CTATTGAGAAAGCTGATGAA+TGG | + | chr6_4:31922620-31922639 | Msa0985420:CDS | 35.0% | |
| AGAGAAATAGTTCCAACCTT+TGG | - | chr6_4:31922671-31922690 | None:intergenic | 35.0% | |
| TAACACACACACATCAGAAA+AGG | - | chr6_4:31922694-31922713 | None:intergenic | 35.0% | |
| ATAACAAACAGGCCCTTTAA+TGG | - | chr6_4:31922735-31922754 | None:intergenic | 35.0% | |
| ! | AACTGCTTTGCATTTGAAAC+AGG | - | chr6_4:31922844-31922863 | None:intergenic | 35.0% |
| ! | GTAACTTCTGAGGACATTAA+GGG | + | chr6_4:31923179-31923198 | Msa0985420:CDS | 35.0% |
| CTATGGTATTACAAGACTAG+GGG | + | chr6_4:31923209-31923228 | Msa0985420:CDS | 35.0% | |
| !! | TCTTTTGGAAACACACAAAC+AGG | - | chr6_4:31923254-31923273 | None:intergenic | 35.0% |
| ! | AAAATCCTCCTCTGATCTTT+TGG | - | chr6_4:31923269-31923288 | None:intergenic | 35.0% |
| CGAAAAGAATATTCTGTGCA+AGG | - | chr6_4:31923308-31923327 | None:intergenic | 35.0% | |
| ! | TACCAATATCTCAACGCTTT+TGG | - | chr6_4:31923387-31923406 | None:intergenic | 35.0% |
| AAACAGGATGATACTGAAAC+TGG | + | chr6_4:31923440-31923459 | Msa0985420:CDS | 35.0% | |
| ! | AAAGATTTTGCACCTTGCTT+GGG | + | chr6_4:31923541-31923560 | Msa0985420:CDS | 35.0% |
| !!! | AGCAATTTTTTGTATCGGCA+CGG | - | chr6_4:31923598-31923617 | None:intergenic | 35.0% |
| CAGAAACAACATTCAGATCA+AGG | - | chr6_4:31923688-31923707 | None:intergenic | 35.0% | |
| TGTGACAGCACCTTAATAAA+CGG | + | chr6_4:31923965-31923984 | Msa0985420:CDS | 35.0% | |
| TTAGGCTGAAATTGCTTACA+TGG | + | chr6_4:31924095-31924114 | Msa0985420:CDS | 35.0% | |
| !! | TGCTTACATGGTTTAGTTTG+AGG | + | chr6_4:31924107-31924126 | Msa0985420:CDS | 35.0% |
| !! | GCTTACATGGTTTAGTTTGA+GGG | + | chr6_4:31924108-31924127 | Msa0985420:CDS | 35.0% |
| TGGATTCAATAACAAGGTTG+TGG | + | chr6_4:31924255-31924274 | Msa0985420:CDS | 35.0% | |
| ! | AGTGCTTTGAACATGAGAAC+TGG | - | chr6_4:31920932-31920951 | None:intergenic | 40.0% |
| ! | TTCTCATGTTCAAAGCACTC+TGG | + | chr6_4:31920933-31920952 | Msa0985420:five_prime_UTR | 40.0% |
| CGGACTTCAGAAACTTATGA+AGG | - | chr6_4:31921001-31921020 | None:intergenic | 40.0% | |
| !! | ATAAGTTTCTGAAGTCCGGT+CGG | + | chr6_4:31921003-31921022 | Msa0985420:five_prime_UTR | 40.0% |
| GTGCTTGTCTTTATCAAAGC+AGG | - | chr6_4:31921047-31921066 | None:intergenic | 40.0% | |
| GCACATTTCTTCAGAAAAGC+AGG | + | chr6_4:31921063-31921082 | Msa0985420:five_prime_UTR | 40.0% | |
| CAGGTGGTACAAATCGAATA+GGG | - | chr6_4:31921172-31921191 | None:intergenic | 40.0% | |
| ATTACGGACATTCAAACTCC+TGG | + | chr6_4:31921207-31921226 | Msa0985420:CDS | 40.0% | |
| ! | AGCAGAGTTTTTACAGATCC+AGG | - | chr6_4:31921228-31921247 | None:intergenic | 40.0% |
| ! | CCTTGTTATCATCGAAGAGA+TGG | - | chr6_4:31921310-31921329 | None:intergenic | 40.0% |
| CCATCTCTTCGATGATAACA+AGG | + | chr6_4:31921307-31921326 | Msa0985420:CDS | 40.0% | |
| GTATGCAGTGAATCTTCTCA+AGG | + | chr6_4:31921347-31921366 | Msa0985420:CDS | 40.0% | |
| ATGCAGTGAATCTTCTCAAG+GGG | + | chr6_4:31921349-31921368 | Msa0985420:CDS | 40.0% | |
| TATTCCAGTAACTTTACCGC+AGG | - | chr6_4:31921483-31921502 | None:intergenic | 40.0% | |
| TTTCTTCACCTGCTGTGTTA+TGG | + | chr6_4:31921517-31921536 | Msa0985420:intron | 40.0% | |
| TACAACATCCATAACACAGC+AGG | - | chr6_4:31921528-31921547 | None:intergenic | 40.0% | |
| !! | CCCTTATTGTTGTTTGCTGT+TGG | + | chr6_4:31921564-31921583 | Msa0985420:intron | 40.0% |
| TGTTGGTATAGTGACGCTTT+CGG | + | chr6_4:31921581-31921600 | Msa0985420:intron | 40.0% | |
| GATACATGTGAGTCGTATCT+AGG | + | chr6_4:31921637-31921656 | Msa0985420:intron | 40.0% | |
| AAACCTGTTAGAGACTGAGA+AGG | - | chr6_4:31922006-31922025 | None:intergenic | 40.0% | |
| GGGAAACTTGTATACGTTGT+AGG | + | chr6_4:31922137-31922156 | Msa0985420:intron | 40.0% | |
| GTGTGGATGTACTATGCTAT+AGG | + | chr6_4:31922410-31922429 | Msa0985420:CDS | 40.0% | |
| ATTGCATGACATGGTACAAG+AGG | + | chr6_4:31922480-31922499 | Msa0985420:CDS | 40.0% | |
| GCTAAACTGGAAAAGGAAGT+TGG | + | chr6_4:31922508-31922527 | Msa0985420:CDS | 40.0% | |
| CATCAGCTTTCTCAATAGCA+AGG | - | chr6_4:31922618-31922637 | None:intergenic | 40.0% | |
| TGAGAAAGCTGATGAATGGT+TGG | + | chr6_4:31922624-31922643 | Msa0985420:CDS | 40.0% | |
| GATGACAATCCAGAATCCAA+AGG | + | chr6_4:31922652-31922671 | Msa0985420:CDS | 40.0% | |
| ACAATCCAGAATCCAAAGGT+TGG | + | chr6_4:31922656-31922675 | Msa0985420:intron | 40.0% | |
| TAGTTCCAACCTTTGGATTC+TGG | - | chr6_4:31922664-31922683 | None:intergenic | 40.0% | |
| CTCTTCAAACACAAACTTGC+AGG | - | chr6_4:31923114-31923133 | None:intergenic | 40.0% | |
| CTGCAAGTTTGTGTTTGAAG+AGG | + | chr6_4:31923112-31923131 | Msa0985420:intron | 40.0% | |
| AATGCCAAACGTAACTTCTG+AGG | + | chr6_4:31923169-31923188 | Msa0985420:CDS | 40.0% | |
| ATGTCCTCAGAAGTTACGTT+TGG | - | chr6_4:31923176-31923195 | None:intergenic | 40.0% | |
| ! | CGTAACTTCTGAGGACATTA+AGG | + | chr6_4:31923178-31923197 | Msa0985420:CDS | 40.0% |
| GTGTGTTTCCAAAAGATCAG+AGG | + | chr6_4:31923258-31923277 | Msa0985420:CDS | 40.0% | |
| TGTTTCCAAAAGATCAGAGG+AGG | + | chr6_4:31923261-31923280 | Msa0985420:CDS | 40.0% | |
| AAGAATATTCTGTGCAAGGC+TGG | - | chr6_4:31923304-31923323 | None:intergenic | 40.0% | |
| !! | CACCAAAAGCGTTGAGATAT+TGG | + | chr6_4:31923382-31923401 | Msa0985420:CDS | 40.0% |
| CAAGGTGCAAAATCTTTCCA+AGG | - | chr6_4:31923538-31923557 | None:intergenic | 40.0% | |
| ! | GAAAGATTTTGCACCTTGCT+TGG | + | chr6_4:31923540-31923559 | Msa0985420:CDS | 40.0% |
| GCCGATACAAAAAATTGCTG+TGG | + | chr6_4:31923599-31923618 | Msa0985420:CDS | 40.0% | |
| AAAAACCTAGCAAGACCACA+TGG | + | chr6_4:31923827-31923846 | Msa0985420:CDS | 40.0% | |
| ATCTAAGGAGAACGAACCAT+CGG | - | chr6_4:31924008-31924027 | None:intergenic | 40.0% | |
| ! | AATTCGTTGGCTAGAATGTC+AGG | + | chr6_4:31924054-31924073 | Msa0985420:CDS | 40.0% |
| ! | ATTCGTTGGCTAGAATGTCA+GGG | + | chr6_4:31924055-31924074 | Msa0985420:CDS | 40.0% |
| !! | ATGGTTTAGTTTGAGGGCAA+CGG | + | chr6_4:31924114-31924133 | Msa0985420:CDS | 40.0% |
| ! | GAAGAAGTTCCTTTTCCGAC+CGG | - | chr6_4:31921021-31921040 | None:intergenic | 45.0% |
| TCGAAAAAAGTTTCCGGCCT+CGG | + | chr6_4:31921107-31921126 | Msa0985420:CDS | 45.0% | |
| TCAAGGAAGCAACTTCGCAA+GGG | + | chr6_4:31921140-31921159 | Msa0985420:CDS | 45.0% | |
| GCAGGTGGTACAAATCGAAT+AGG | - | chr6_4:31921173-31921192 | None:intergenic | 45.0% | |
| TAATCAGAAGGAGGATCAGC+AGG | - | chr6_4:31921191-31921210 | None:intergenic | 45.0% | |
| GCTGATCCTCCTTCTGATTA+CGG | + | chr6_4:31921191-31921210 | Msa0985420:CDS | 45.0% | |
| GAATGTCCGTAATCAGAAGG+AGG | - | chr6_4:31921200-31921219 | None:intergenic | 45.0% | |
| CCTACAGAATGTGTCGTCTT+TGG | - | chr6_4:31921267-31921286 | None:intergenic | 45.0% | |
| CCAAAGACGACACATTCTGT+AGG | + | chr6_4:31921264-31921283 | Msa0985420:CDS | 45.0% | |
| AAGACGACACATTCTGTAGG+AGG | + | chr6_4:31921267-31921286 | Msa0985420:CDS | 45.0% | |
| ! | CAAGGATCCTAGTCTTTGGT+TGG | + | chr6_4:31921325-31921344 | Msa0985420:CDS | 45.0% |
| CTGCATACCAACCAAAGACT+AGG | - | chr6_4:31921335-31921354 | None:intergenic | 45.0% | |
| GCAAACAACAATAAGGGGGA+GGG | - | chr6_4:31921561-31921580 | None:intergenic | 45.0% | |
| AGCAAACAACAATAAGGGGG+AGG | - | chr6_4:31921562-31921581 | None:intergenic | 45.0% | |
| TCTCAATAGCGCTGCTATAG+CGG | + | chr6_4:31921695-31921714 | Msa0985420:intron | 45.0% | |
| GATAGGGCGAGAATGTGAAA+AGG | - | chr6_4:31921891-31921910 | None:intergenic | 45.0% | |
| AAGGAACGTTACTGAGAGAG+AGG | - | chr6_4:31921987-31922006 | None:intergenic | 45.0% | |
| GTTCCTTCTCAGTCTCTAAC+AGG | + | chr6_4:31922000-31922019 | Msa0985420:intron | 45.0% | |
| GAAGGAGAATACAAACCCAG+TGG | - | chr6_4:31922186-31922205 | None:intergenic | 45.0% | |
| TTGAGCTTCAGGCTTCTGAA+CGG | + | chr6_4:31922439-31922458 | Msa0985420:CDS | 45.0% | |
| TGACATGGTACAAGAGGCAA+AGG | + | chr6_4:31922486-31922505 | Msa0985420:CDS | 45.0% | |
| ACAAGAGGCAAAGGCTAAAC+TGG | + | chr6_4:31922495-31922514 | Msa0985420:CDS | 45.0% | |
| GGCAAAGGCTAAACTGGAAA+AGG | + | chr6_4:31922501-31922520 | Msa0985420:CDS | 45.0% | |
| ! | AAGGAAGTTGGTCCTGTTGA+CGG | + | chr6_4:31922520-31922539 | Msa0985420:CDS | 45.0% |
| TCTGCACATCACTGGCAATA+GGG | - | chr6_4:31922585-31922604 | None:intergenic | 45.0% | |
| TTCTGCACATCACTGGCAAT+AGG | - | chr6_4:31922586-31922605 | None:intergenic | 45.0% | |
| ACAGAGTTTCTGCACATCAC+TGG | - | chr6_4:31922593-31922612 | None:intergenic | 45.0% | |
| GGATTCTGGATTGTCATCAG+TGG | - | chr6_4:31922650-31922669 | None:intergenic | 45.0% | |
| AATATTCTGTGCAAGGCTGG+AGG | - | chr6_4:31923301-31923320 | None:intergenic | 45.0% | |
| TATACAGATGTTGGCGACCA+TGG | + | chr6_4:31923338-31923357 | Msa0985420:CDS | 45.0% | |
| ACTTAGCCTCAGAATGACCA+TGG | - | chr6_4:31923358-31923377 | None:intergenic | 45.0% | |
| CAGGATGATACTGAAACTGG+AGG | + | chr6_4:31923443-31923462 | Msa0985420:CDS | 45.0% | |
| GATGATACTGAAACTGGAGG+AGG | + | chr6_4:31923446-31923465 | Msa0985420:CDS | 45.0% | |
| AATCCGGGGTAAGTCATTGT+GGG | - | chr6_4:31923503-31923522 | None:intergenic | 45.0% | |
| AATGACTTACCCCGGATTCA+AGG | + | chr6_4:31923505-31923524 | Msa0985420:CDS | 45.0% | |
| AAGGTCTCGAACCTTGAATC+CGG | - | chr6_4:31923519-31923538 | None:intergenic | 45.0% | |
| GTGAGTTCTTCGTTCAAGTC+AGG | - | chr6_4:31923713-31923732 | None:intergenic | 45.0% | |
| !! | CTCCTCCTTTTGAGTCTTCT+CGG | + | chr6_4:31923732-31923751 | Msa0985420:CDS | 45.0% |
| !! | TCCTCCTTTTGAGTCTTCTC+GGG | + | chr6_4:31923733-31923752 | Msa0985420:CDS | 45.0% |
| TCATCCCGAGAAGACTCAAA+AGG | - | chr6_4:31923740-31923759 | None:intergenic | 45.0% | |
| TCTTCTCGGGATGAAGACAA+TGG | + | chr6_4:31923746-31923765 | Msa0985420:CDS | 45.0% | |
| TTCGTTTGGTCTCCAGGTTT+CGG | - | chr6_4:31923864-31923883 | None:intergenic | 45.0% | |
| AACTTCTTCGTTTGGTCTCC+AGG | - | chr6_4:31923870-31923889 | None:intergenic | 45.0% | |
| ACAGCAGGAACTTCTTCGTT+TGG | - | chr6_4:31923878-31923897 | None:intergenic | 45.0% | |
| TACTTGCACCTACGACTATG+CGG | - | chr6_4:31923907-31923926 | None:intergenic | 45.0% | |
| TCTAAGGAGAACGAACCATC+GGG | - | chr6_4:31924007-31924026 | None:intergenic | 45.0% | |
| GATCGATGATCCGAGTAGTT+TGG | + | chr6_4:31924177-31924196 | Msa0985420:CDS | 45.0% | |
| AGTTGACCTGCCAAACTACT+CGG | - | chr6_4:31924190-31924209 | None:intergenic | 45.0% | |
| TCCAACAAGAGGGCAAGAAA+TGG | + | chr6_4:31924235-31924254 | Msa0985420:CDS | 45.0% | |
| TCCATTTCTTGCCCTCTTGT+TGG | - | chr6_4:31924239-31924258 | None:intergenic | 45.0% | |
| !! | TTCTGAAGTCCGGTCGGAAA+AGG | + | chr6_4:31921009-31921028 | Msa0985420:five_prime_UTR | 50.0% |
| CTCAAGGAAGCAACTTCGCA+AGG | + | chr6_4:31921139-31921158 | Msa0985420:CDS | 50.0% | |
| TCTTCTCAAGGGGACTCATG+TGG | + | chr6_4:31921359-31921378 | Msa0985420:CDS | 50.0% | |
| GGACAGCTGATGCAACTTGA+TGG | + | chr6_4:31921440-31921459 | Msa0985420:CDS | 50.0% | |
| CAGCTGATGCAACTTGATGG+TGG | + | chr6_4:31921443-31921462 | Msa0985420:CDS | 50.0% | |
| GGTTATTGTTGTGCCTCCTG+CGG | + | chr6_4:31921464-31921483 | Msa0985420:CDS | 50.0% | |
| TCCAGTAACTTTACCGCAGG+AGG | - | chr6_4:31921480-31921499 | None:intergenic | 50.0% | |
| ACAACAATAAGGGGGAGGGA+GGG | - | chr6_4:31921557-31921576 | None:intergenic | 50.0% | |
| AACAACAATAAGGGGGAGGG+AGG | - | chr6_4:31921558-31921577 | None:intergenic | 50.0% | |
| TTGGAAGCCTAAGGATGCCA+TGG | + | chr6_4:31921781-31921800 | Msa0985420:intron | 50.0% | |
| GAAGAGGGAAGCTGCGATTA+GGG | - | chr6_4:31921946-31921965 | None:intergenic | 50.0% | |
| ! | ATTGGGCTAGATCTGCCACT+GGG | + | chr6_4:31922168-31922187 | Msa0985420:intron | 50.0% |
| TTGGAAGAACCACCGTCAAC+AGG | - | chr6_4:31922535-31922554 | None:intergenic | 50.0% | |
| TGACGGTGGTTCTTCCAAGA+TGG | + | chr6_4:31922537-31922556 | Msa0985420:CDS | 50.0% | |
| GGTTCTTCCAAGATGGTACG+TGG | + | chr6_4:31922544-31922563 | Msa0985420:CDS | 50.0% | |
| GACAATGCCACGTACCATCT+TGG | - | chr6_4:31922554-31922573 | None:intergenic | 50.0% | |
| !!! | AAGCTCCTTTTGGCTCACAG+AGG | + | chr6_4:31923073-31923092 | Msa0985420:intron | 50.0% |
| !!! | AGCTCCTTTTGGCTCACAGA+GGG | + | chr6_4:31923074-31923093 | Msa0985420:intron | 50.0% |
| TGAACCCTCTGTGAGCCAAA+AGG | - | chr6_4:31923081-31923100 | None:intergenic | 50.0% | |
| AACACAAACTTGCAGGCAGC+AGG | - | chr6_4:31923107-31923126 | None:intergenic | 50.0% | |
| TGTGGGATCGATCTCCAGTT+TGG | - | chr6_4:31923486-31923505 | None:intergenic | 50.0% | |
| GATCCCACAATGACTTACCC+CGG | + | chr6_4:31923497-31923516 | Msa0985420:CDS | 50.0% | |
| GAATCCGGGGTAAGTCATTG+TGG | - | chr6_4:31923504-31923523 | None:intergenic | 50.0% | |
| AGGTCTCGAACCTTGAATCC+GGG | - | chr6_4:31923518-31923537 | None:intergenic | 50.0% | |
| GGATTCAAGGTTCGAGACCT+TGG | + | chr6_4:31923518-31923537 | Msa0985420:CDS | 50.0% | |
| CTTGTTCTTGAGCCCAAGCA+AGG | - | chr6_4:31923556-31923575 | None:intergenic | 50.0% | |
| CTTGCTTGGGCTCAAGAACA+AGG | + | chr6_4:31923554-31923573 | Msa0985420:CDS | 50.0% | |
| TCAAGAACAAGGCTGCCTTG+AGG | + | chr6_4:31923565-31923584 | Msa0985420:CDS | 50.0% | |
| CAAGAACAAGGCTGCCTTGA+GGG | + | chr6_4:31923566-31923585 | Msa0985420:CDS | 50.0% | |
| AAGAACAAGGCTGCCTTGAG+GGG | + | chr6_4:31923567-31923586 | Msa0985420:CDS | 50.0% | |
| AACGATCAAGCCTAGCCATC+CGG | + | chr6_4:31923631-31923650 | Msa0985420:CDS | 50.0% | |
| ! | AAATGCACCGATCGCTCTTC+CGG | - | chr6_4:31923653-31923672 | None:intergenic | 50.0% |
| TCCCGAGAAGACTCAAAAGG+AGG | - | chr6_4:31923737-31923756 | None:intergenic | 50.0% | |
| CAATGGTTGCACTTTGCAGC+AGG | + | chr6_4:31923763-31923782 | Msa0985420:CDS | 50.0% | |
| CTAGCAAGACCACATGGTAG+CGG | + | chr6_4:31923833-31923852 | Msa0985420:CDS | 50.0% | |
| ACTTGCACCTACGACTATGC+GGG | - | chr6_4:31923906-31923925 | None:intergenic | 50.0% | |
| GCATAGTCGTAGGTGCAAGT+AGG | + | chr6_4:31923906-31923925 | Msa0985420:CDS | 50.0% | |
| TCTCCTTTACATGCACCCGA+TGG | + | chr6_4:31923989-31924008 | Msa0985420:CDS | 50.0% | |
| GAACCATCGGGTGCATGTAA+AGG | - | chr6_4:31923995-31924014 | None:intergenic | 50.0% | |
| GATGATCCGAGTAGTTTGGC+AGG | + | chr6_4:31924181-31924200 | Msa0985420:CDS | 50.0% | |
| !! | TCCTTGAGCACTGATTGCCG+AGG | - | chr6_4:31921127-31921146 | None:intergenic | 55.0% |
| TCAGAAGGAGGATCAGCAGG+TGG | - | chr6_4:31921188-31921207 | None:intergenic | 55.0% | |
| GCCTCCTGCGGTAAAGTTAC+TGG | + | chr6_4:31921476-31921495 | Msa0985420:CDS | 55.0% | |
| ! | TGGGGTACCATGGCATCCTT+AGG | - | chr6_4:31921791-31921810 | None:intergenic | 55.0% |
| GATGAGAACGCGGCGTGATA+GGG | - | chr6_4:31921907-31921926 | None:intergenic | 55.0% | |
| AGATGAGAACGCGGCGTGAT+AGG | - | chr6_4:31921908-31921927 | None:intergenic | 55.0% | |
| GCGAGAGTGAGATGAGAACG+CGG | - | chr6_4:31921917-31921936 | None:intergenic | 55.0% | |
| GGAAGAGGGAAGCTGCGATT+AGG | - | chr6_4:31921947-31921966 | None:intergenic | 55.0% | |
| TTCCCTCTTCCTCTCAGTCG+CGG | + | chr6_4:31921956-31921975 | Msa0985420:intron | 55.0% | |
| ! | GATTGGGCTAGATCTGCCAC+TGG | + | chr6_4:31922167-31922186 | Msa0985420:intron | 55.0% |
| ! | GAAGTTGGTCCTGTTGACGG+TGG | + | chr6_4:31922523-31922542 | Msa0985420:CDS | 55.0% |
| TGGTACGTGGCATTGTCAGC+AGG | + | chr6_4:31922557-31922576 | Msa0985420:CDS | 55.0% | |
| TGGCGACCATGGTCATTCTG+AGG | + | chr6_4:31923349-31923368 | Msa0985420:CDS | 55.0% | |
| AACTGGAGGAGGCAGTGAAC+CGG | + | chr6_4:31923457-31923476 | Msa0985420:CDS | 55.0% | |
| ! | TCGATCTCCAGTTTGGAGCC+CGG | - | chr6_4:31923479-31923498 | None:intergenic | 55.0% |
| GGTCTCGAACCTTGAATCCG+GGG | - | chr6_4:31923517-31923536 | None:intergenic | 55.0% | |
| TAGCCATCCGGAAGAGCGAT+CGG | + | chr6_4:31923643-31923662 | Msa0985420:CDS | 55.0% | |
| GGAAGAGCGATCGGTGCATT+TGG | + | chr6_4:31923652-31923671 | Msa0985420:CDS | 55.0% | |
| CACTTTGCAGCAGGCTGTTG+AGG | + | chr6_4:31923772-31923791 | Msa0985420:CDS | 55.0% | |
| ! | CGCTACCATGTGGTCTTGCT+AGG | - | chr6_4:31923835-31923854 | None:intergenic | 55.0% |
| ACTATGCGGGAGTCAACAGC+AGG | - | chr6_4:31923893-31923912 | None:intergenic | 55.0% | |
| ! | GTTGACTCCCGCATAGTCGT+AGG | + | chr6_4:31923896-31923915 | Msa0985420:CDS | 55.0% |
| ! | GGCAACGGAACAAGAGCGTA+GGG | + | chr6_4:31924129-31924148 | Msa0985420:CDS | 55.0% |
| ! | AACGGAACAAGAGCGTAGGG+TGG | + | chr6_4:31924132-31924151 | Msa0985420:CDS | 55.0% |
| !! | TGAGCACTGATTGCCGAGGC+CGG | - | chr6_4:31921123-31921142 | None:intergenic | 60.0% |
| GCCTCGGCAATCAGTGCTCA+AGG | + | chr6_4:31921123-31921142 | Msa0985420:CDS | 60.0% | |
| !! | GCTGCTATAGCGGTGTTGCG+TGG | + | chr6_4:31921705-31921724 | Msa0985420:intron | 60.0% |
| ! | TAGAGCGCTTCACGGGCCTA+CGG | - | chr6_4:31921754-31921773 | None:intergenic | 60.0% |
| AGCGAAAGATGCTCGGCGTG+TGG | + | chr6_4:31922393-31922412 | Msa0985420:CDS | 60.0% | |
| ACTGGAGGAGGCAGTGAACC+GGG | + | chr6_4:31923458-31923477 | Msa0985420:CDS | 60.0% | |
| CAGTGAACCGGGCTCCAAAC+TGG | + | chr6_4:31923469-31923488 | Msa0985420:CDS | 60.0% | |
| GATCGCTCTTCCGGATGGCT+AGG | - | chr6_4:31923644-31923663 | None:intergenic | 60.0% | |
| !! | GCAAGACCACATGGTAGCGG+TGG | + | chr6_4:31923836-31923855 | Msa0985420:CDS | 60.0% |
| TCGGAACCACCGCTACCATG+TGG | - | chr6_4:31923845-31923864 | None:intergenic | 60.0% | |
| GTAGCGGTGGTTCCGAAACC+TGG | + | chr6_4:31923849-31923868 | Msa0985420:CDS | 60.0% | |
| ! | GGGCAACGGAACAAGAGCGT+AGG | + | chr6_4:31924128-31924147 | Msa0985420:CDS | 60.0% |
| !! | AGCGGTGTTGCGTGGCAGTG+TGG | + | chr6_4:31921713-31921732 | Msa0985420:intron | 65.0% |
| CGCCGCGACTGAGAGGAAGA+GGG | - | chr6_4:31921961-31921980 | None:intergenic | 65.0% | |
| ACGCCGCGACTGAGAGGAAG+AGG | - | chr6_4:31921962-31921981 | None:intergenic | 65.0% | |
| GAGGAAACGCCGCGACTGAG+AGG | - | chr6_4:31921968-31921987 | None:intergenic | 65.0% | |
| CGGCACGGCAAAACCCCTCA+AGG | - | chr6_4:31923583-31923602 | None:intergenic | 65.0% | |
| ! | GCACCGATCGCTCTTCCGGA+TGG | - | chr6_4:31923649-31923668 | None:intergenic | 65.0% |
| GTGGCAGTGTGGCCCTGCAC+TGG | + | chr6_4:31921724-31921743 | Msa0985420:intron | 70.0% | |
| GCCTACGGCGTGCCAGTGCA+GGG | - | chr6_4:31921739-31921758 | None:intergenic | 70.0% | |
| ! | GCCCTGCACTGGCACGCCGT+AGG | + | chr6_4:31921735-31921754 | Msa0985420:intron | 75.0% |
| GGCCTACGGCGTGCCAGTGC+AGG | - | chr6_4:31921740-31921759 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 31920819 | 31924288 | 31920819 | ID=Msa0985420;Name=Msa0985420 |
| chr6_4 | mRNA | 31920819 | 31924288 | 31920819 | ID=Msa0985420-mRNA-1;Parent=Msa0985420;Name=Msa0985420-mRNA-1;_AED=0.12;_eAED=0.12;_QI=267|0.5|0.66|1|1|1|3|0|627 |
| chr6_4 | exon | 31920819 | 31921507 | 31920819 | ID=Msa0985420-mRNA-1:exon:8498;Parent=Msa0985420-mRNA-1 |
| chr6_4 | exon | 31922369 | 31922673 | 31922369 | ID=Msa0985420-mRNA-1:exon:8499;Parent=Msa0985420-mRNA-1 |
| chr6_4 | exon | 31923132 | 31924288 | 31923132 | ID=Msa0985420-mRNA-1:exon:8500;Parent=Msa0985420-mRNA-1 |
| chr6_4 | five_prime_UTR | 31920819 | 31921085 | 31920819 | ID=Msa0985420-mRNA-1:five_prime_utr;Parent=Msa0985420-mRNA-1 |
| chr6_4 | CDS | 31921086 | 31921507 | 31921086 | ID=Msa0985420-mRNA-1:cds;Parent=Msa0985420-mRNA-1 |
| chr6_4 | CDS | 31922369 | 31922673 | 31922369 | ID=Msa0985420-mRNA-1:cds;Parent=Msa0985420-mRNA-1 |
| chr6_4 | CDS | 31923132 | 31924288 | 31923132 | ID=Msa0985420-mRNA-1:cds;Parent=Msa0985420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
