Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166990 | XP_013468351.1 | 98.545 | 481 | 7 | 0 | 1 | 481 | 1 | 481 | 0.0 | 976 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166990 | sp|O80925|AGD7_ARATH | 61.585 | 492 | 142 | 8 | 1 | 481 | 1 | 456 | 0.0 | 551 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166990 | A0A072VLX3 | 98.545 | 481 | 7 | 0 | 1 | 481 | 1 | 481 | 0.0 | 976 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0122550 | Msa0166990 | 0.804306 | 2.301852e-49 | -8.615850e-47 |
| Msa0166990 | Msa0468660 | 0.801588 | 8.389881e-49 | -8.615850e-47 |
| Msa0166990 | Msa0558920 | 0.812109 | 5.001390e-51 | -8.615850e-47 |
| Msa0166990 | Msa0933170 | 0.806056 | 9.899135e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166990 | MtrunA17_Chr1g0182571 | 98.545 | 481 | 7 | 0 | 1 | 481 | 1 | 481 | 0.0 | 976 |
| Msa0166990 | MtrunA17_Chr7g0262921 | 64.989 | 457 | 102 | 10 | 1 | 444 | 1 | 412 | 0.0 | 556 |
| Msa0166990 | MtrunA17_Chr8g0366741 | 48.039 | 102 | 53 | 0 | 7 | 108 | 13 | 114 | 9.81e-28 | 114 |
| Msa0166990 | MtrunA17_Chr8g0366731 | 44.762 | 105 | 58 | 0 | 7 | 111 | 13 | 117 | 2.62e-27 | 113 |
| Msa0166990 | MtrunA17_Chr2g0292461 | 48.864 | 88 | 43 | 2 | 5 | 91 | 19 | 105 | 3.56e-21 | 94.4 |
| Msa0166990 | MtrunA17_Chr2g0318391 | 48.101 | 79 | 41 | 0 | 5 | 83 | 17 | 95 | 2.17e-20 | 93.6 |
| Msa0166990 | MtrunA17_Chr8g0360731 | 48.101 | 79 | 41 | 0 | 5 | 83 | 17 | 95 | 7.21e-20 | 92.0 |
| Msa0166990 | MtrunA17_Chr6g0481511 | 51.351 | 74 | 36 | 0 | 4 | 77 | 33 | 106 | 2.58e-19 | 87.8 |
| Msa0166990 | MtrunA17_Chr3g0083541 | 48.052 | 77 | 39 | 1 | 6 | 81 | 53 | 129 | 2.23e-17 | 84.0 |
| Msa0166990 | MtrunA17_Chr8g0352731 | 50.000 | 70 | 34 | 1 | 13 | 81 | 3 | 72 | 3.02e-17 | 80.1 |
| Msa0166990 | MtrunA17_Chr8g0380371 | 51.786 | 56 | 27 | 0 | 1 | 56 | 6 | 61 | 7.57e-16 | 72.0 |
| Msa0166990 | MtrunA17_Chr4g0037651 | 46.053 | 76 | 39 | 1 | 10 | 83 | 485 | 560 | 3.41e-15 | 78.6 |
| Msa0166990 | MtrunA17_Chr8g0385781 | 48.571 | 70 | 34 | 1 | 10 | 77 | 500 | 569 | 1.64e-14 | 76.3 |
| Msa0166990 | MtrunA17_Chr7g0221441 | 47.143 | 70 | 35 | 1 | 10 | 77 | 508 | 577 | 9.80e-14 | 73.9 |
| Msa0166990 | MtrunA17_Chr3g0131671 | 44.286 | 70 | 37 | 1 | 10 | 77 | 503 | 572 | 4.05e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166990 | AT2G37550.2 | 61.585 | 492 | 142 | 8 | 1 | 481 | 1 | 456 | 0.0 | 551 |
| Msa0166990 | AT2G37550.1 | 61.585 | 492 | 142 | 8 | 1 | 481 | 1 | 456 | 0.0 | 551 |
| Msa0166990 | AT3G53710.1 | 61.847 | 498 | 134 | 13 | 1 | 481 | 1 | 459 | 0.0 | 540 |
| Msa0166990 | AT3G53710.3 | 61.847 | 498 | 134 | 13 | 1 | 481 | 1 | 459 | 0.0 | 540 |
| Msa0166990 | AT3G53710.2 | 61.847 | 498 | 134 | 13 | 1 | 481 | 1 | 459 | 0.0 | 540 |
| Msa0166990 | AT4G17890.2 | 48.571 | 105 | 54 | 0 | 7 | 111 | 16 | 120 | 1.34e-29 | 120 |
| Msa0166990 | AT4G17890.1 | 48.571 | 105 | 54 | 0 | 7 | 111 | 16 | 120 | 2.21e-29 | 119 |
| Msa0166990 | AT5G46750.1 | 48.571 | 105 | 54 | 0 | 7 | 111 | 13 | 117 | 6.66e-29 | 118 |
| Msa0166990 | AT2G35210.1 | 46.667 | 105 | 56 | 0 | 7 | 111 | 13 | 117 | 1.10e-27 | 114 |
| Msa0166990 | AT2G35210.2 | 46.667 | 105 | 56 | 0 | 7 | 111 | 13 | 117 | 2.62e-27 | 113 |
| Msa0166990 | AT4G05330.3 | 48.810 | 84 | 42 | 1 | 5 | 87 | 16 | 99 | 3.89e-22 | 97.8 |
| Msa0166990 | AT4G05330.1 | 48.810 | 84 | 42 | 1 | 5 | 87 | 16 | 99 | 3.89e-22 | 97.8 |
| Msa0166990 | AT5G54310.1 | 41.803 | 122 | 68 | 2 | 7 | 128 | 19 | 137 | 1.24e-21 | 97.8 |
| Msa0166990 | AT3G17660.4 | 52.703 | 74 | 35 | 0 | 4 | 77 | 16 | 89 | 2.79e-21 | 91.7 |
| Msa0166990 | AT3G17660.1 | 52.703 | 74 | 35 | 0 | 4 | 77 | 16 | 89 | 3.41e-21 | 92.8 |
| Msa0166990 | AT4G21160.2 | 47.727 | 88 | 44 | 2 | 5 | 91 | 16 | 102 | 4.24e-21 | 94.7 |
| Msa0166990 | AT4G21160.3 | 47.727 | 88 | 44 | 2 | 5 | 91 | 16 | 102 | 4.24e-21 | 94.7 |
| Msa0166990 | AT4G21160.1 | 47.727 | 88 | 44 | 2 | 5 | 91 | 16 | 102 | 4.24e-21 | 94.7 |
| Msa0166990 | AT4G21160.4 | 47.727 | 88 | 44 | 2 | 5 | 91 | 16 | 102 | 4.24e-21 | 94.7 |
| Msa0166990 | AT3G17660.2 | 52.703 | 74 | 35 | 0 | 4 | 77 | 16 | 89 | 9.34e-21 | 91.7 |
| Msa0166990 | AT3G07940.2 | 50.649 | 77 | 37 | 1 | 6 | 81 | 49 | 125 | 9.62e-20 | 89.4 |
| Msa0166990 | AT3G07940.1 | 50.649 | 77 | 37 | 1 | 6 | 81 | 49 | 125 | 3.31e-19 | 89.7 |
| Msa0166990 | AT1G60860.2 | 54.386 | 57 | 26 | 0 | 7 | 63 | 359 | 415 | 2.71e-15 | 79.0 |
| Msa0166990 | AT1G60860.1 | 54.386 | 57 | 26 | 0 | 7 | 63 | 470 | 526 | 2.76e-15 | 79.3 |
| Msa0166990 | AT1G60860.3 | 54.386 | 57 | 26 | 0 | 7 | 63 | 299 | 355 | 3.18e-15 | 78.6 |
| Msa0166990 | AT3G17660.3 | 50.000 | 58 | 29 | 0 | 4 | 61 | 16 | 73 | 3.79e-14 | 72.0 |
| Msa0166990 | AT5G13300.1 | 48.571 | 70 | 34 | 1 | 10 | 77 | 507 | 576 | 4.21e-14 | 75.5 |
| Msa0166990 | AT5G61980.1 | 45.714 | 70 | 36 | 1 | 15 | 82 | 509 | 578 | 1.10e-13 | 74.3 |
| Msa0166990 | AT1G10870.1 | 50.000 | 54 | 27 | 0 | 10 | 63 | 473 | 526 | 3.33e-13 | 72.4 |
| Msa0166990 | AT1G10870.2 | 50.000 | 54 | 27 | 0 | 10 | 63 | 473 | 526 | 3.71e-13 | 72.4 |
Find 202 sgRNAs with CRISPR-Local
Find 337 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTATCGTGATCGGATTC+AGG | 0.265695 | 1_4:+48637120 | Msa0166990:CDS |
| TGCTCTGAAGAATTAAGATT+TGG | 0.281660 | 1_4:-48640246 | None:intergenic |
| CTTCTTAATTTAACTTTGTA+TGG | 0.293258 | 1_4:+48640334 | Msa0166990:three_prime_UTR |
| TGGGATAGGGAAGGAGGTTC+GGG | 0.309762 | 1_4:+48637259 | Msa0166990:CDS |
| AAGAAAGCTGCTGGACATAA+TGG | 0.311171 | 1_4:+48639262 | Msa0166990:CDS |
| TGCATATCTACAAACCTTAG+AGG | 0.326302 | 1_4:-48639318 | None:intergenic |
| CACAAAAGAGATTACTTCTA+AGG | 0.329121 | 1_4:+48637827 | Msa0166990:CDS |
| CTCAAACTCTTGGGACGATT+GGG | 0.331416 | 1_4:+48639006 | Msa0166990:CDS |
| TATTTATACGCGGTCGCAAT+TGG | 0.334644 | 1_4:+48637366 | Msa0166990:CDS |
| TGGCGGCATCACGGCGGCTC+CGG | 0.342322 | 1_4:+48636807 | Msa0166990:CDS |
| TTGGGATAGGGAAGGAGGTT+CGG | 0.345457 | 1_4:+48637258 | Msa0166990:CDS |
| ATCCCAGCTCTTGGGATGAT+TGG | 0.345579 | 1_4:+48639110 | Msa0166990:CDS |
| ATGATGCTGGTTGGGCTGGC+TGG | 0.346920 | 1_4:+48639188 | Msa0166990:CDS |
| ATCGGAGGATGAAGTGTAGA+AGG | 0.360348 | 1_4:-48636778 | None:intergenic |
| GCAGATCTTGTTGCCGGGTT+GGG | 0.371767 | 1_4:-48636840 | None:intergenic |
| CAAATTCGACTACTAATAAC+TGG | 0.372531 | 1_4:+48638867 | Msa0166990:CDS |
| CCGGTTGTGAAGGAGAATTT+AGG | 0.374910 | 1_4:+48637175 | Msa0166990:CDS |
| ATGATTCCGGCTGGGATGAT+TGG | 0.384077 | 1_4:+48637239 | Msa0166990:CDS |
| TATTCATCTGGTGGGCAGTC+TGG | 0.394756 | 1_4:+48639079 | Msa0166990:CDS |
| TGTGAGGAGTTTGGAGAAAG+TGG | 0.397330 | 1_4:-48636723 | None:intergenic |
| CTTCCTTCCTAGAATCTTTG+TGG | 0.398078 | 1_4:-48639135 | None:intergenic |
| TGGGTGAGGTGTGAGGAGTT+TGG | 0.401930 | 1_4:-48636732 | None:intergenic |
| GACTGCCCACCAGATGAATA+AGG | 0.405430 | 1_4:-48639076 | None:intergenic |
| GCTCTGAAGAATTAAGATTT+GGG | 0.409035 | 1_4:-48640245 | None:intergenic |
| TGATAGAAATGGCTACTATC+AGG | 0.410799 | 1_4:+48638904 | Msa0166990:CDS |
| GGAGTTGGTCCTTTATTAGT+AGG | 0.412801 | 1_4:-48639055 | None:intergenic |
| AAGGGAGAACCTACTAATAA+AGG | 0.413572 | 1_4:+48639046 | Msa0166990:CDS |
| CGCAGATCTTGTTGCCGGGT+TGG | 0.414757 | 1_4:-48636841 | None:intergenic |
| TGTTGCCGGGTTGGGATTGA+AGG | 0.414970 | 1_4:-48636832 | None:intergenic |
| GCTCAAACTCTTGGGACGAT+TGG | 0.416102 | 1_4:+48639005 | Msa0166990:CDS |
| ATTGGGACCACAAAGATTCT+AGG | 0.416709 | 1_4:+48639128 | Msa0166990:CDS |
| CCACAATAATGATGCTGGTT+GGG | 0.420450 | 1_4:+48639180 | Msa0166990:CDS |
| TCCCAGCTCTTGGGATGATT+GGG | 0.422693 | 1_4:+48639111 | Msa0166990:CDS |
| GGCGGCATCACGGCGGCTCC+GGG | 0.423745 | 1_4:+48636808 | Msa0166990:CDS |
| CGCCGATGGGGCAGAGTCGC+CGG | 0.424686 | 1_4:+48637212 | Msa0166990:CDS |
| CGAAATGAGAATGATAGAAA+TGG | 0.430727 | 1_4:+48638893 | Msa0166990:CDS |
| AAACTCAAAGCTCAAACTCT+TGG | 0.431090 | 1_4:+48638996 | Msa0166990:CDS |
| AATAATGATGCTGGTTGGGC+TGG | 0.431540 | 1_4:+48639184 | Msa0166990:CDS |
| TCGGTCGTGGCGTGATCCTC+CGG | 0.431712 | 1_4:+48637156 | Msa0166990:CDS |
| TTCCTTCGGAATAGAATACT+TGG | 0.434318 | 1_4:-48637059 | None:intergenic |
| TGATTCCGGCTGGGATGATT+GGG | 0.435890 | 1_4:+48637240 | Msa0166990:CDS |
| TACTATCAGGATTTCAATCA+AGG | 0.437121 | 1_4:+48638917 | Msa0166990:CDS |
| CGCAAGGTGGGAAGTATGTT+GGG | 0.437210 | 1_4:+48637470 | Msa0166990:CDS |
| TACTCACAATCCCAGCTCTT+GGG | 0.438114 | 1_4:+48639102 | Msa0166990:CDS |
| GGAAGAGAACAATCTTCATC+AGG | 0.440220 | 1_4:+48638965 | Msa0166990:CDS |
| AAATCAGATGACGCTTGGAC+AGG | 0.441545 | 1_4:+48639286 | Msa0166990:CDS |
| GGGGATTGGTAAGTTGTCAT+TGG | 0.442974 | 1_4:+48637770 | Msa0166990:intron |
| AGAAAGCTGCTGGACATAAT+GGG | 0.444118 | 1_4:+48639263 | Msa0166990:CDS |
| CCTAAATTCTCCTTCACAAC+CGG | 0.446662 | 1_4:-48637175 | None:intergenic |
| TCCGGAAAACACCGTGGTCT+CGG | 0.447372 | 1_4:+48636932 | Msa0166990:CDS |
| AACTCAAAGCTCAAACTCTT+GGG | 0.448408 | 1_4:+48638997 | Msa0166990:CDS |
| CATGGCTTTGGCTTCACAGA+AGG | 0.454790 | 1_4:+48638820 | Msa0166990:CDS |
| GGACCAACTCCTTATTCATC+TGG | 0.457989 | 1_4:+48639067 | Msa0166990:CDS |
| TGCGACGGTGGAAGTCCTTC+CGG | 0.458253 | 1_4:-48637451 | None:intergenic |
| AAGGAGAATTTAGGTTCAAA+GGG | 0.460070 | 1_4:+48637184 | Msa0166990:CDS |
| ATCGACGCAGATCTTGTTGC+CGG | 0.461374 | 1_4:-48636846 | None:intergenic |
| AAAGGAGGTAATTCTTCTAC+TGG | 0.461732 | 1_4:+48638944 | Msa0166990:CDS |
| GTATAACACCAACGCTGCTT+CGG | 0.461967 | 1_4:+48637099 | Msa0166990:CDS |
| CGGATTCAGGCTTTGTCGGA+AGG | 0.463866 | 1_4:+48637133 | Msa0166990:CDS |
| GTCCCAATCATCCCAAGAGC+TGG | 0.464845 | 1_4:-48639113 | None:intergenic |
| TGATCGGATTCAGGCTTTGT+CGG | 0.466457 | 1_4:+48637129 | Msa0166990:CDS |
| GTAACAATATCCGTTTCCTT+CGG | 0.466590 | 1_4:-48637073 | None:intergenic |
| TTCAAAGGGAAGGCCGCCGA+TGG | 0.468886 | 1_4:+48637198 | Msa0166990:CDS |
| TGGGGAGCCGATGCTTTAGC+TGG | 0.469014 | 1_4:-48639160 | None:intergenic |
| GTGTAGAAGGATGGAAATGA+GGG | 0.470207 | 1_4:-48636765 | None:intergenic |
| AATCAGATGACGCTTGGACA+GGG | 0.470359 | 1_4:+48639287 | Msa0166990:CDS |
| CAGTCTCGAGATTGTTCCAT+TGG | 0.470757 | 1_4:+48639952 | Msa0166990:three_prime_UTR |
| AGCAGCGTTGGTGTTATACT+TGG | 0.472494 | 1_4:-48637095 | None:intergenic |
| TGATGCTGGTTGGGCTGGCT+GGG | 0.473809 | 1_4:+48639189 | Msa0166990:CDS |
| GTACTCACAATCCCAGCTCT+TGG | 0.474135 | 1_4:+48639101 | Msa0166990:CDS |
| GAAGGAGAATTTAGGTTCAA+AGG | 0.482185 | 1_4:+48637183 | Msa0166990:CDS |
| AGCTTCTGCGGCGGGTAAAG+AGG | 0.482654 | 1_4:+48637390 | Msa0166990:CDS |
| CAGAGATTGGTCAAAGGACA+TGG | 0.483037 | 1_4:+48638780 | Msa0166990:CDS |
| CCCAACCAGCATCATTATTG+TGG | 0.485486 | 1_4:-48639180 | None:intergenic |
| ACGATAAACCGAAGCAGCGT+TGG | 0.485534 | 1_4:-48637107 | None:intergenic |
| TTTGAACGGCGGTGGTGCAC+CGG | 0.486910 | 1_4:+48637321 | Msa0166990:CDS |
| CTGCTTCGGTTTATCGTGAT+CGG | 0.489850 | 1_4:+48637113 | Msa0166990:CDS |
| ATTTAATTATCACAGGGGAT+TGG | 0.494169 | 1_4:+48637756 | Msa0166990:intron |
| AGTCGCCGGAGTAATGATTC+CGG | 0.494324 | 1_4:+48637226 | Msa0166990:CDS |
| AAGGACATGGGGTTTAATGA+AGG | 0.494662 | 1_4:+48638793 | Msa0166990:CDS |
| TCAAAGGGAAGGCCGCCGAT+GGG | 0.498527 | 1_4:+48637199 | Msa0166990:CDS |
| AGTGTAGAAGGATGGAAATG+AGG | 0.500129 | 1_4:-48636766 | None:intergenic |
| CAGTCCTTTCACATGCATAG+TGG | 0.500156 | 1_4:-48640038 | None:intergenic |
| GATAGGGAAGGAGGTTCGGG+TGG | 0.503166 | 1_4:+48637262 | Msa0166990:CDS |
| GCCGGAGTAATGATTCCGGC+TGG | 0.503400 | 1_4:+48637230 | Msa0166990:CDS |
| GGTGGGAAGTATGTTGGGTT+CGG | 0.503415 | 1_4:+48637475 | Msa0166990:CDS |
| GCTGCTAATGCTGTTCAGAC+TGG | 0.505364 | 1_4:+48637804 | Msa0166990:CDS |
| GGAAGGCGGTTATGATCAAA+AGG | 0.509923 | 1_4:+48638721 | Msa0166990:CDS |
| CGGGTTGGGATTGAAGGTCC+CGG | 0.513419 | 1_4:-48636826 | None:intergenic |
| TCGCAAGGTGGGAAGTATGT+TGG | 0.513815 | 1_4:+48637469 | Msa0166990:CDS |
| GCATCTAATAAGAAAGCTGC+TGG | 0.515421 | 1_4:+48639253 | Msa0166990:CDS |
| CCCACAATAATGATGCTGGT+TGG | 0.515926 | 1_4:+48639179 | Msa0166990:CDS |
| GACTTCCACCGTCGCAAGGT+GGG | 0.517045 | 1_4:+48637458 | Msa0166990:CDS |
| TTTGGCTTCACAGAAGGTTG+AGG | 0.518131 | 1_4:+48638826 | Msa0166990:CDS |
| CAATTGGAAGCTTCTGCGGC+GGG | 0.519075 | 1_4:+48637382 | Msa0166990:CDS |
| CTTTGTCGGAAGGTCGGTCG+TGG | 0.519720 | 1_4:+48637143 | Msa0166990:CDS |
| CCAACCAGCATCATTATTGT+GGG | 0.519854 | 1_4:-48639179 | None:intergenic |
| ACTCAAAAGACATCAGAGAT+TGG | 0.520352 | 1_4:+48638767 | Msa0166990:CDS |
| ATGGGAAATCAGATGACGCT+TGG | 0.522747 | 1_4:+48639281 | Msa0166990:CDS |
| GATCCGTCACCATGGATGCT+TGG | 0.527744 | 1_4:+48636975 | Msa0166990:CDS |
| GATTTCGGACCAAGCATCCA+TGG | 0.529426 | 1_4:-48636984 | None:intergenic |
| CCGGCTGGGATGATTGGGAT+AGG | 0.534746 | 1_4:+48637245 | Msa0166990:CDS |
| TCGACGCAGATCTTGTTGCC+GGG | 0.535740 | 1_4:-48636845 | None:intergenic |
| GAGGATGAAGTGTAGAAGGA+TGG | 0.537467 | 1_4:-48636774 | None:intergenic |
| TTCAGGCTTTGTCGGAAGGT+CGG | 0.544881 | 1_4:+48637137 | Msa0166990:CDS |
| CTCGAGACTGGTAATGCAGA+TGG | 0.545659 | 1_4:-48639939 | None:intergenic |
| CTCCGGCGACTCTGCCCCAT+CGG | 0.545912 | 1_4:-48637214 | None:intergenic |
| GCTCCCCACAATAATGATGC+TGG | 0.546441 | 1_4:+48639175 | Msa0166990:CDS |
| TTTAGGAATTTGAACGGCGG+TGG | 0.547735 | 1_4:+48637313 | Msa0166990:CDS |
| GTATTCTATTCCGAAGGAAA+CGG | 0.550054 | 1_4:+48637063 | Msa0166990:CDS |
| TGTGGATTGCTCCTCTGTGA+AGG | 0.550251 | 1_4:-48637511 | None:intergenic |
| TTGCTCCTCTGTGAAGGCAT+CGG | 0.551923 | 1_4:-48637505 | None:intergenic |
| GCTTCTGCGGCGGGTAAAGA+GGG | 0.555155 | 1_4:+48637391 | Msa0166990:CDS |
| CAATGGAACAATCTCGAGAC+TGG | 0.558227 | 1_4:-48639951 | None:intergenic |
| AAATGAGGGAGACAGACGTT+GGG | 0.558815 | 1_4:-48636751 | None:intergenic |
| CTTCATCCTCCGATCATCCA+TGG | 0.559426 | 1_4:+48636787 | Msa0166990:exon |
| AAACAATTCTTCCTGCACAT+AGG | 0.561143 | 1_4:-48640106 | None:intergenic |
| CTTTCGGACTGATGACATGC+AGG | 0.562108 | 1_4:+48639993 | Msa0166990:three_prime_UTR |
| GCGTGATCCTCCGGTTGTGA+AGG | 0.563730 | 1_4:+48637165 | Msa0166990:CDS |
| TCCGTCGACCTCGATCTCGC+CGG | 0.565057 | 1_4:-48637340 | None:intergenic |
| ATCAGATGACGCTTGGACAG+GGG | 0.565298 | 1_4:+48639288 | Msa0166990:CDS |
| TGCCAAGTATTCTATTCCGA+AGG | 0.565535 | 1_4:+48637057 | Msa0166990:CDS |
| TCTTTGTTTCAGGTCAAGGA+AGG | 0.567944 | 1_4:+48638704 | Msa0166990:intron |
| TACTTCCCACCTTGCGACGG+TGG | 0.568939 | 1_4:-48637463 | None:intergenic |
| GGCGGAGAATGAGTCAAGGC+CGG | 0.569646 | 1_4:+48637432 | Msa0166990:CDS |
| GTCGCAATTGGAAGCTTCTG+CGG | 0.569797 | 1_4:+48637378 | Msa0166990:CDS |
| CCACCAGATGAATAAGGAGT+TGG | 0.570074 | 1_4:-48639070 | None:intergenic |
| CAAAGGGAAGGCCGCCGATG+GGG | 0.571024 | 1_4:+48637200 | Msa0166990:CDS |
| AGGGAGACAGACGTTGGGTG+AGG | 0.573300 | 1_4:-48636746 | None:intergenic |
| GTGATGCCGCCATGGATGAT+CGG | 0.575331 | 1_4:-48636796 | None:intergenic |
| GATCATCCATGGCGGCATCA+CGG | 0.576667 | 1_4:+48636798 | Msa0166990:exon |
| AGAATTTAGGTTCAAAGGGA+AGG | 0.577046 | 1_4:+48637188 | Msa0166990:CDS |
| CGGCTGGGATGATTGGGATA+GGG | 0.577559 | 1_4:+48637246 | Msa0166990:CDS |
| TCGGAATAGAATACTTGGCA+AGG | 0.577709 | 1_4:-48637054 | None:intergenic |
| TCCCAATCATCCCAAGAGCT+GGG | 0.579490 | 1_4:-48639112 | None:intergenic |
| TTCATGTGCTTAGAATGCTC+CGG | 0.579995 | 1_4:+48636914 | Msa0166990:CDS |
| GAAGGACTTCCACCGTCGCA+AGG | 0.582983 | 1_4:+48637454 | Msa0166990:CDS |
| GAGCCGCCGTGATGCCGCCA+TGG | 0.583473 | 1_4:-48636804 | None:intergenic |
| TGGGATAATGCAAAAGATGA+TGG | 0.583815 | 1_4:+48639208 | Msa0166990:CDS |
| GAGTTCCCAAAATGTTACAT+AGG | 0.584773 | 1_4:-48640168 | None:intergenic |
| CCTATCCCAATCATCCCAGC+CGG | 0.584873 | 1_4:-48637245 | None:intergenic |
| CCGGAGTAATGATTCCGGCT+GGG | 0.585313 | 1_4:+48637231 | Msa0166990:CDS |
| ATTTACAAGTGTTGAAAGAG+AGG | 0.587446 | 1_4:+48640214 | Msa0166990:three_prime_UTR |
| TCAGATGACGCTTGGACAGG+GGG | 0.587832 | 1_4:+48639289 | Msa0166990:CDS |
| GAGGTTCGGGTGGTGATGTG+AGG | 0.591884 | 1_4:+48637272 | Msa0166990:CDS |
| GATGTGAGGAGTAAGTCGAC+GGG | 0.593326 | 1_4:+48637286 | Msa0166990:CDS |
| TCAAACTCTTGGGACGATTG+GGG | 0.596473 | 1_4:+48639007 | Msa0166990:CDS |
| AGGACATGGGGTTTAATGAA+GGG | 0.599160 | 1_4:+48638794 | Msa0166990:CDS |
| GTGGTGCACCGGCGAGATCG+AGG | 0.600418 | 1_4:+48637332 | Msa0166990:CDS |
| CCCAGCCGGAATCATTACTC+CGG | 0.606336 | 1_4:-48637231 | None:intergenic |
| CAGTGGGCATCAGTCTCCTA+CGG | 0.607011 | 1_4:+48636887 | Msa0166990:CDS |
| CTCTCAGAAGAATCCACAGT+GGG | 0.607546 | 1_4:+48636871 | Msa0166990:CDS |
| GCAATTGGAAGCTTCTGCGG+CGG | 0.607693 | 1_4:+48637381 | Msa0166990:CDS |
| CCAACTCCTTATTCATCTGG+TGG | 0.607704 | 1_4:+48639070 | Msa0166990:CDS |
| CGGGACCTTCAATCCCAACC+CGG | 0.609873 | 1_4:+48636827 | Msa0166990:CDS |
| AAGCATCCATGGTGACGGAT+CGG | 0.610332 | 1_4:-48636973 | None:intergenic |
| TTGTTTCAGGTCAAGGAAGG+CGG | 0.612416 | 1_4:+48638707 | Msa0166990:intron |
| TTCAATCAAGGGAACAAAGG+AGG | 0.615582 | 1_4:+48638929 | Msa0166990:CDS |
| AGAGATTGGTCAAAGGACAT+GGG | 0.615964 | 1_4:+48638781 | Msa0166990:CDS |
| GGACATGGGGTTTAATGAAG+GGG | 0.616409 | 1_4:+48638795 | Msa0166990:CDS |
| GATTTCAATCAAGGGAACAA+AGG | 0.616794 | 1_4:+48638926 | Msa0166990:CDS |
| GGACCAAGCATCCATGGTGA+CGG | 0.618778 | 1_4:-48636978 | None:intergenic |
| CATGGTGACGGATCGGACGA+AGG | 0.619426 | 1_4:-48636966 | None:intergenic |
| CGGCGACTCTGCCCCATCGG+CGG | 0.622822 | 1_4:-48637211 | None:intergenic |
| TGATGTGAGGAGTAAGTCGA+CGG | 0.623072 | 1_4:+48637285 | Msa0166990:CDS |
| GAGAATGAGTCAAGGCCGGA+AGG | 0.624456 | 1_4:+48637436 | Msa0166990:CDS |
| GAACTGCTTATTCAACGTCA+AGG | 0.626437 | 1_4:-48640365 | None:intergenic |
| CTTCGTCCGATCCGTCACCA+TGG | 0.629444 | 1_4:+48636967 | Msa0166990:CDS |
| AAAACCACTATGCATGTGAA+AGG | 0.630270 | 1_4:+48640034 | Msa0166990:three_prime_UTR |
| GGAAGAACCAGCTAAAGCAT+CGG | 0.631170 | 1_4:+48639153 | Msa0166990:CDS |
| GGACTTCCACCGTCGCAAGG+TGG | 0.631829 | 1_4:+48637457 | Msa0166990:CDS |
| ACATACTTCCCACCTTGCGA+CGG | 0.631937 | 1_4:-48637466 | None:intergenic |
| GATGATTGGGATAGGGAAGG+AGG | 0.632481 | 1_4:+48637253 | Msa0166990:CDS |
| AGACATCAGAGATTGGTCAA+AGG | 0.632664 | 1_4:+48638774 | Msa0166990:CDS |
| CAGACGTTGGGTGAGGTGTG+AGG | 0.635236 | 1_4:-48636739 | None:intergenic |
| GGACCACAAAGATTCTAGGA+AGG | 0.638994 | 1_4:+48639132 | Msa0166990:CDS |
| GAAATGAGGGAGACAGACGT+TGG | 0.642852 | 1_4:-48636752 | None:intergenic |
| CAACTCCTTATTCATCTGGT+GGG | 0.643334 | 1_4:+48639071 | Msa0166990:CDS |
| ACTATCAGGATTTCAATCAA+GGG | 0.645448 | 1_4:+48638918 | Msa0166990:CDS |
| GAGATTGGTCAAAGGACATG+GGG | 0.646826 | 1_4:+48638782 | Msa0166990:CDS |
| GAAGAGAACAATCTTCATCA+GGG | 0.647329 | 1_4:+48638966 | Msa0166990:CDS |
| GGCGAGATCGAGGTCGACGG+AGG | 0.649649 | 1_4:+48637342 | Msa0166990:CDS |
| CAACCAGCATCATTATTGTG+GGG | 0.653135 | 1_4:-48639178 | None:intergenic |
| ACCGGCGAGATCGAGGTCGA+CGG | 0.653631 | 1_4:+48637339 | Msa0166990:CDS |
| TGGGATGATTGGGATAGGGA+AGG | 0.657232 | 1_4:+48637250 | Msa0166990:CDS |
| AACTATGAGAGACACAACGA+AGG | 0.658598 | 1_4:-48640390 | None:intergenic |
| ATGACATGCAGGCAAAGCCA+TGG | 0.659819 | 1_4:+48640004 | Msa0166990:three_prime_UTR |
| AGATGTGAACACCGAGACCA+CGG | 0.664997 | 1_4:-48636943 | None:intergenic |
| TAAGCACATGAAGATGCCGT+AGG | 0.669663 | 1_4:-48636903 | None:intergenic |
| AAATTCTCCTTCACAACCGG+AGG | 0.674563 | 1_4:-48637172 | None:intergenic |
| AGATGGCGGAGAATGAGTCA+AGG | 0.685000 | 1_4:+48637428 | Msa0166990:CDS |
| GACATGGGGTTTAATGAAGG+GGG | 0.697882 | 1_4:+48638796 | Msa0166990:CDS |
| ATGTGAGGAGTAAGTCGACG+GGG | 0.706562 | 1_4:+48637287 | Msa0166990:CDS |
| TAGGAGACTGATGCCCACTG+TGG | 0.710667 | 1_4:-48636884 | None:intergenic |
| ATGCCGCCATGGATGATCGG+AGG | 0.718825 | 1_4:-48636793 | None:intergenic |
| CATCCATGGCGGCATCACGG+CGG | 0.720125 | 1_4:+48636801 | Msa0166990:exon |
| GAATGCTCCGGAAAACACCG+TGG | 0.731228 | 1_4:+48636926 | Msa0166990:CDS |
| TGTGAGGAGTAAGTCGACGG+GGG | 0.747661 | 1_4:+48637288 | Msa0166990:CDS |
| CATCCTCCGATCATCCATGG+CGG | 0.756295 | 1_4:+48636790 | Msa0166990:exon |
| CGACGGAGGATATTTATACG+CGG | 0.767034 | 1_4:+48637356 | Msa0166990:CDS |
| CTAGTCCGATGCCTTCACAG+AGG | 0.771719 | 1_4:+48637500 | Msa0166990:CDS |
| GCTCTCAGAAGAATCCACAG+TGG | 0.805841 | 1_4:+48636870 | Msa0166990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAGAAAGAAAAAAT+GGG | - | chr1_4:48638677-48638696 | None:intergenic | 10.0% |
| !! | AAAAAATTAGAAAGAAAAAA+TGG | - | chr1_4:48638678-48638697 | None:intergenic | 10.0% |
| !! | TTATTGTATTTAATTATCAC+AGG | + | chr1_4:48637749-48637768 | Msa0166990:intron | 15.0% |
| !! | TATTGTATTTAATTATCACA+GGG | + | chr1_4:48637750-48637769 | Msa0166990:intron | 15.0% |
| !!! | TTATCAGTGTTATAATTTTT+TGG | + | chr1_4:48639571-48639590 | Msa0166990:intron | 15.0% |
| !!! | TATCAGTGTTATAATTTTTT+GGG | + | chr1_4:48639572-48639591 | Msa0166990:intron | 15.0% |
| !! | TTATCTATTAAGGAAATAAA+TGG | + | chr1_4:48639768-48639787 | Msa0166990:intron | 15.0% |
| !!! | TGATATTTTTATTTCAAATG+AGG | - | chr1_4:48639897-48639916 | None:intergenic | 15.0% |
| !!! | CATTTTTTTGATTTGGATTT+CGG | - | chr1_4:48637002-48637021 | None:intergenic | 20.0% |
| !! | ATTGTATTTAATTATCACAG+GGG | + | chr1_4:48637751-48637770 | Msa0166990:intron | 20.0% |
| !!! | TATTTGGATTATTTTGTTCA+TGG | + | chr1_4:48637850-48637869 | Msa0166990:intron | 20.0% |
| !!! | ATTTGGATTATTTTGTTCAT+GGG | + | chr1_4:48637851-48637870 | Msa0166990:intron | 20.0% |
| !! | GAAAATTTGTATTTGTTTCA+CGG | + | chr1_4:48637905-48637924 | Msa0166990:intron | 20.0% |
| !!! | TTCATTTATTTCTTTTTAGC+TGG | - | chr1_4:48638214-48638233 | None:intergenic | 20.0% |
| !! | AGCTAAAAAGAAATAAATGA+AGG | + | chr1_4:48638213-48638232 | Msa0166990:intron | 20.0% |
| !! | GCTAAAAAGAAATAAATGAA+GGG | + | chr1_4:48638214-48638233 | Msa0166990:intron | 20.0% |
| !!! | TGTATTGATAATGTATTTGT+GGG | + | chr1_4:48638269-48638288 | Msa0166990:intron | 20.0% |
| !!! | TGATTTTATTTCAATTGCAT+TGG | - | chr1_4:48638498-48638517 | None:intergenic | 20.0% |
| !! | TGAAAAGAAAAGAAACTAAT+TGG | - | chr1_4:48638543-48638562 | None:intergenic | 20.0% |
| !!! | CTTTTCATTTTTGCATTAAT+TGG | + | chr1_4:48638556-48638575 | Msa0166990:intron | 20.0% |
| !!! | ATATGCAAATTTTCTTTTGT+AGG | + | chr1_4:48639334-48639353 | Msa0166990:intron | 20.0% |
| !! | CATTTACAAAATGTTAAGTA+GGG | - | chr1_4:48639458-48639477 | None:intergenic | 20.0% |
| !! | TCATTTACAAAATGTTAAGT+AGG | - | chr1_4:48639459-48639478 | None:intergenic | 20.0% |
| !!! | TTTTTTCCTATGTAACATTT+TGG | + | chr1_4:48640162-48640181 | Msa0166990:three_prime_UTR | 20.0% |
| !!! | TTTTTCCTATGTAACATTTT+GGG | + | chr1_4:48640163-48640182 | Msa0166990:three_prime_UTR | 20.0% |
| !!! | CTTCTTAATTTAACTTTGTA+TGG | + | chr1_4:48640334-48640353 | Msa0166990:three_prime_UTR | 20.0% |
| ! | CGAAATCCAAATCAAAAAAA+TGG | + | chr1_4:48637000-48637019 | Msa0166990:CDS | 25.0% |
| !! | GAAAAATAATCATTTTGCTG+TGG | - | chr1_4:48637532-48637551 | None:intergenic | 25.0% |
| !!! | TTATTTTTCTGTTGTTTCAC+AGG | + | chr1_4:48637543-48637562 | Msa0166990:CDS | 25.0% |
| ! | TTGAATGTAATCAAATGTGT+CGG | - | chr1_4:48637643-48637662 | None:intergenic | 25.0% |
| ! | TGATTACATTCAATTACTAC+CGG | + | chr1_4:48637650-48637669 | Msa0166990:intron | 25.0% |
| !!! | TTTGGATTATTTTGTTCATG+GGG | + | chr1_4:48637852-48637871 | Msa0166990:intron | 25.0% |
| ! | CAACAAATTGAACTAATACA+TGG | - | chr1_4:48637954-48637973 | None:intergenic | 25.0% |
| !! | CTATTTGATAACACTTATCT+CGG | - | chr1_4:48638065-48638084 | None:intergenic | 25.0% |
| ! | TGACTGCATTAAAAAGATAA+CGG | - | chr1_4:48638175-48638194 | None:intergenic | 25.0% |
| !!! | GTGTATTGATAATGTATTTG+TGG | + | chr1_4:48638268-48638287 | Msa0166990:intron | 25.0% |
| !!! | TTTTTTTTGCTCTTTGTTTC+AGG | + | chr1_4:48638694-48638713 | Msa0166990:intron | 25.0% |
| !!! | GGATTTGATAACTTTTATGA+AGG | + | chr1_4:48639229-48639248 | Msa0166990:CDS | 25.0% |
| ! | TGGAATTATTTAACACGAAA+AGG | - | chr1_4:48639630-48639649 | None:intergenic | 25.0% |
| ! | TTTCCTTAATAGATAACCAA+CGG | - | chr1_4:48639764-48639783 | None:intergenic | 25.0% |
| !!! | AATATCATAATTTTTGGACC+AGG | + | chr1_4:48639910-48639929 | Msa0166990:intron | 25.0% |
| !!! | AGGAAGAATTGTTTTTTTTG+AGG | + | chr1_4:48640115-48640134 | Msa0166990:three_prime_UTR | 25.0% |
| ! | ACATAGGAAAAAATTACAAG+TGG | - | chr1_4:48640155-48640174 | None:intergenic | 25.0% |
| !! | TAGAACTATATTTTTCCAAC+CGG | - | chr1_4:48640193-48640212 | None:intergenic | 25.0% |
| !!! | CAGCTTCCATTTTTTTGATT+TGG | - | chr1_4:48637009-48637028 | None:intergenic | 30.0% |
| CAAATCAAAAAAATGGAAGC+TGG | + | chr1_4:48637007-48637026 | Msa0166990:CDS | 30.0% | |
| ! | AAGGAGAATTTAGGTTCAAA+GGG | + | chr1_4:48637184-48637203 | Msa0166990:CDS | 30.0% |
| CATGCTTTATAGTTGATTAG+TGG | + | chr1_4:48637703-48637722 | Msa0166990:intron | 30.0% | |
| ATTTAATTATCACAGGGGAT+TGG | + | chr1_4:48637756-48637775 | Msa0166990:intron | 30.0% | |
| CACAAAAGAGATTACTTCTA+AGG | + | chr1_4:48637827-48637846 | Msa0166990:CDS | 30.0% | |
| !! | GAGATTACTTCTAAGGTATT+TGG | + | chr1_4:48637834-48637853 | Msa0166990:intron | 30.0% |
| !! | GGGAATTGATAATGTTAACT+TGG | + | chr1_4:48638289-48638308 | Msa0166990:intron | 30.0% |
| ! | TTATGACTTTTAGCATAGTG+TGG | + | chr1_4:48638428-48638447 | Msa0166990:intron | 30.0% |
| ! | TATGACTTTTAGCATAGTGT+GGG | + | chr1_4:48638429-48638448 | Msa0166990:intron | 30.0% |
| CAAATTCGACTACTAATAAC+TGG | + | chr1_4:48638867-48638886 | Msa0166990:CDS | 30.0% | |
| CGAAATGAGAATGATAGAAA+TGG | + | chr1_4:48638893-48638912 | Msa0166990:CDS | 30.0% | |
| TACTATCAGGATTTCAATCA+AGG | + | chr1_4:48638917-48638936 | Msa0166990:CDS | 30.0% | |
| ACTATCAGGATTTCAATCAA+GGG | + | chr1_4:48638918-48638937 | Msa0166990:CDS | 30.0% | |
| GTTAAGTAGGGATAAAGATT+GGG | - | chr1_4:48639446-48639465 | None:intergenic | 30.0% | |
| TGTTAAGTAGGGATAAAGAT+TGG | - | chr1_4:48639447-48639466 | None:intergenic | 30.0% | |
| !!! | GTGTTATAATTTTTTGGGAG+TGG | + | chr1_4:48639577-48639596 | Msa0166990:intron | 30.0% |
| CACGAAAAGGTCATATTAAA+GGG | - | chr1_4:48639617-48639636 | None:intergenic | 30.0% | |
| ACACGAAAAGGTCATATTAA+AGG | - | chr1_4:48639618-48639637 | None:intergenic | 30.0% | |
| ! | CAATTTTATAGGTTAGTGAG+TGG | - | chr1_4:48639737-48639756 | None:intergenic | 30.0% |
| TTAGATACTTTAACCTGACA+TGG | + | chr1_4:48639792-48639811 | Msa0166990:intron | 30.0% | |
| ACAAAAATTACTGCAGCTTT+CGG | + | chr1_4:48639977-48639996 | Msa0166990:three_prime_UTR | 30.0% | |
| !! | ATTTACAAGTGTTGAAAGAG+AGG | + | chr1_4:48640214-48640233 | Msa0166990:three_prime_UTR | 30.0% |
| !! | GCTCTGAAGAATTAAGATTT+GGG | - | chr1_4:48640248-48640267 | None:intergenic | 30.0% |
| !! | TGCTCTGAAGAATTAAGATT+TGG | - | chr1_4:48640249-48640268 | None:intergenic | 30.0% |
| ATCAAAAAAATGGAAGCTGG+TGG | + | chr1_4:48637010-48637029 | Msa0166990:CDS | 35.0% | |
| TTCCTTCGGAATAGAATACT+TGG | - | chr1_4:48637062-48637081 | None:intergenic | 35.0% | |
| GTATTCTATTCCGAAGGAAA+CGG | + | chr1_4:48637063-48637082 | Msa0166990:CDS | 35.0% | |
| GTAACAATATCCGTTTCCTT+CGG | - | chr1_4:48637076-48637095 | None:intergenic | 35.0% | |
| ! | GAAGGAGAATTTAGGTTCAA+AGG | + | chr1_4:48637183-48637202 | Msa0166990:CDS | 35.0% |
| ! | AGAATTTAGGTTCAAAGGGA+AGG | + | chr1_4:48637188-48637207 | Msa0166990:CDS | 35.0% |
| !! | GGGGATTTTAGGAATTTGAA+CGG | + | chr1_4:48637307-48637326 | Msa0166990:CDS | 35.0% |
| !! | GATTTTAGGAATTTGAACGG+CGG | + | chr1_4:48637310-48637329 | Msa0166990:CDS | 35.0% |
| !!! | ATTTTTTGCGAAGAAGATGG+CGG | + | chr1_4:48637414-48637433 | Msa0166990:CDS | 35.0% |
| ACATGGTAGAAATATCCCTA+AGG | - | chr1_4:48637937-48637956 | None:intergenic | 35.0% | |
| !!! | TAGCTGTTTTTCGAATTCCA+CGG | - | chr1_4:48638021-48638040 | None:intergenic | 35.0% |
| TGATGTGTGATTGACAATAC+TGG | + | chr1_4:48638145-48638164 | Msa0166990:intron | 35.0% | |
| TCAGAACAGTGGATGTTAAT+TGG | + | chr1_4:48638385-48638404 | Msa0166990:intron | 35.0% | |
| ACAGTGGATGTTAATTGGAT+CGG | + | chr1_4:48638390-48638409 | Msa0166990:intron | 35.0% | |
| ! | ATGACTTTTAGCATAGTGTG+GGG | + | chr1_4:48638430-48638449 | Msa0166990:intron | 35.0% |
| !! | TGCTAACTGTTTGCTTTTCA+TGG | + | chr1_4:48638638-48638657 | Msa0166990:intron | 35.0% |
| !! | GCTTTTCATGGTATTTTTGC+TGG | + | chr1_4:48638650-48638669 | Msa0166990:intron | 35.0% |
| ACTCAAAAGACATCAGAGAT+TGG | + | chr1_4:48638767-48638786 | Msa0166990:CDS | 35.0% | |
| TGATAGAAATGGCTACTATC+AGG | + | chr1_4:48638904-48638923 | Msa0166990:CDS | 35.0% | |
| GATTTCAATCAAGGGAACAA+AGG | + | chr1_4:48638926-48638945 | Msa0166990:CDS | 35.0% | |
| AAAGGAGGTAATTCTTCTAC+TGG | + | chr1_4:48638944-48638963 | Msa0166990:CDS | 35.0% | |
| GAAGAGAACAATCTTCATCA+GGG | + | chr1_4:48638966-48638985 | Msa0166990:CDS | 35.0% | |
| AAACTCAAAGCTCAAACTCT+TGG | + | chr1_4:48638996-48639015 | Msa0166990:CDS | 35.0% | |
| AACTCAAAGCTCAAACTCTT+GGG | + | chr1_4:48638997-48639016 | Msa0166990:CDS | 35.0% | |
| AAGGGAGAACCTACTAATAA+AGG | + | chr1_4:48639046-48639065 | Msa0166990:CDS | 35.0% | |
| TGGGATAATGCAAAAGATGA+TGG | + | chr1_4:48639208-48639227 | Msa0166990:CDS | 35.0% | |
| TGCATATCTACAAACCTTAG+AGG | - | chr1_4:48639321-48639340 | None:intergenic | 35.0% | |
| CCTCTCATATACACAGTTAT+AGG | - | chr1_4:48639386-48639405 | None:intergenic | 35.0% | |
| CCTATAACTGTGTATATGAG+AGG | + | chr1_4:48639383-48639402 | Msa0166990:intron | 35.0% | |
| ATATTAAAGGGAGAGATGAG+AGG | - | chr1_4:48639605-48639624 | None:intergenic | 35.0% | |
| ! | TGACCGTTGGTTATCTATTA+AGG | + | chr1_4:48639758-48639777 | Msa0166990:intron | 35.0% |
| ! | GCAGTAATTTTTGTCACCAA+TGG | - | chr1_4:48639971-48639990 | None:intergenic | 35.0% |
| !! | TCACATGCATAGTGGTTTTA+GGG | - | chr1_4:48640033-48640052 | None:intergenic | 35.0% |
| ! | TTCACATGCATAGTGGTTTT+AGG | - | chr1_4:48640034-48640053 | None:intergenic | 35.0% |
| AAAACCACTATGCATGTGAA+AGG | + | chr1_4:48640034-48640053 | Msa0166990:three_prime_UTR | 35.0% | |
| AAACTCAAAAACCTATGTGC+AGG | + | chr1_4:48640095-48640114 | Msa0166990:three_prime_UTR | 35.0% | |
| AAACAATTCTTCCTGCACAT+AGG | - | chr1_4:48640109-48640128 | None:intergenic | 35.0% | |
| GAGTTCCCAAAATGTTACAT+AGG | - | chr1_4:48640171-48640190 | None:intergenic | 35.0% | |
| !! | ATGTAACATTTTGGGAACTC+CGG | + | chr1_4:48640171-48640190 | Msa0166990:three_prime_UTR | 35.0% |
| GTGTAGAAGGATGGAAATGA+GGG | - | chr1_4:48636768-48636787 | None:intergenic | 40.0% | |
| AGTGTAGAAGGATGGAAATG+AGG | - | chr1_4:48636769-48636788 | None:intergenic | 40.0% | |
| TTCATGTGCTTAGAATGCTC+CGG | + | chr1_4:48636914-48636933 | Msa0166990:CDS | 40.0% | |
| TCGGAATAGAATACTTGGCA+AGG | - | chr1_4:48637057-48637076 | None:intergenic | 40.0% | |
| TGCCAAGTATTCTATTCCGA+AGG | + | chr1_4:48637057-48637076 | Msa0166990:CDS | 40.0% | |
| CCTAAATTCTCCTTCACAAC+CGG | - | chr1_4:48637178-48637197 | None:intergenic | 40.0% | |
| TATTTATACGCGGTCGCAAT+TGG | + | chr1_4:48637366-48637385 | Msa0166990:CDS | 40.0% | |
| !!! | GGGATTTTTTGCGAAGAAGA+TGG | + | chr1_4:48637411-48637430 | Msa0166990:CDS | 40.0% |
| CATGACTCGTCGAAAAACAA+AGG | - | chr1_4:48637588-48637607 | None:intergenic | 40.0% | |
| GCTATCTGATAACACTGTAG+TGG | - | chr1_4:48637990-48638009 | None:intergenic | 40.0% | |
| CTAGTATGCTATAGCACTAC+AGG | - | chr1_4:48638095-48638114 | None:intergenic | 40.0% | |
| TAGAGGAAAGCTGTTGAATG+AGG | + | chr1_4:48638453-48638472 | Msa0166990:intron | 40.0% | |
| AGCTGTTGAATGAGGTCAAT+AGG | + | chr1_4:48638461-48638480 | Msa0166990:intron | 40.0% | |
| GCTGTTGAATGAGGTCAATA+GGG | + | chr1_4:48638462-48638481 | Msa0166990:intron | 40.0% | |
| AGTACCTTCATGATTGTCTC+TGG | + | chr1_4:48638597-48638616 | Msa0166990:intron | 40.0% | |
| ! | TTGCTCTTTGTTTCAGGTCA+AGG | + | chr1_4:48638700-48638719 | Msa0166990:intron | 40.0% |
| ! | TCTTTGTTTCAGGTCAAGGA+AGG | + | chr1_4:48638704-48638723 | Msa0166990:intron | 40.0% |
| ! | AGACATCAGAGATTGGTCAA+AGG | + | chr1_4:48638774-48638793 | Msa0166990:CDS | 40.0% |
| ! | AGAGATTGGTCAAAGGACAT+GGG | + | chr1_4:48638781-48638800 | Msa0166990:CDS | 40.0% |
| AAGGACATGGGGTTTAATGA+AGG | + | chr1_4:48638793-48638812 | Msa0166990:CDS | 40.0% | |
| AGGACATGGGGTTTAATGAA+GGG | + | chr1_4:48638794-48638813 | Msa0166990:CDS | 40.0% | |
| TTCAATCAAGGGAACAAAGG+AGG | + | chr1_4:48638929-48638948 | Msa0166990:CDS | 40.0% | |
| GGAAGAGAACAATCTTCATC+AGG | + | chr1_4:48638965-48638984 | Msa0166990:CDS | 40.0% | |
| ATTGGGGCCAAAAAGATAGT+TGG | + | chr1_4:48639023-48639042 | Msa0166990:CDS | 40.0% | |
| GGCCAAAAAGATAGTTGGAA+GGG | + | chr1_4:48639028-48639047 | Msa0166990:CDS | 40.0% | |
| ! | CTCCCTTCCAACTATCTTTT+TGG | - | chr1_4:48639033-48639052 | None:intergenic | 40.0% |
| ! | GGAGTTGGTCCTTTATTAGT+AGG | - | chr1_4:48639058-48639077 | None:intergenic | 40.0% |
| CAACTCCTTATTCATCTGGT+GGG | + | chr1_4:48639071-48639090 | Msa0166990:CDS | 40.0% | |
| ATTGGGACCACAAAGATTCT+AGG | + | chr1_4:48639128-48639147 | Msa0166990:CDS | 40.0% | |
| CTTCCTTCCTAGAATCTTTG+TGG | - | chr1_4:48639138-48639157 | None:intergenic | 40.0% | |
| CAACCAGCATCATTATTGTG+GGG | - | chr1_4:48639181-48639200 | None:intergenic | 40.0% | |
| CCAACCAGCATCATTATTGT+GGG | - | chr1_4:48639182-48639201 | None:intergenic | 40.0% | |
| ! | CCACAATAATGATGCTGGTT+GGG | + | chr1_4:48639180-48639199 | Msa0166990:CDS | 40.0% |
| GCATCTAATAAGAAAGCTGC+TGG | + | chr1_4:48639253-48639272 | Msa0166990:CDS | 40.0% | |
| AAGAAAGCTGCTGGACATAA+TGG | + | chr1_4:48639262-48639281 | Msa0166990:CDS | 40.0% | |
| AGAAAGCTGCTGGACATAAT+GGG | + | chr1_4:48639263-48639282 | Msa0166990:CDS | 40.0% | |
| ! | TTTTGCCCAATCTCTTCTCT+TGG | + | chr1_4:48639484-48639503 | Msa0166990:intron | 40.0% |
| TGAAGTTCAGTGGTCATGTA+GGG | - | chr1_4:48639518-48639537 | None:intergenic | 40.0% | |
| GGATTATTCCTGAAGTTCAG+TGG | - | chr1_4:48639528-48639547 | None:intergenic | 40.0% | |
| CAGGAATAATCCATGCTACT+TGG | + | chr1_4:48639536-48639555 | Msa0166990:intron | 40.0% | |
| ! | TAATCCATGCTACTTGGAGT+TGG | + | chr1_4:48639542-48639561 | Msa0166990:intron | 40.0% |
| ATTTCCAACTCCAAGTAGCA+TGG | - | chr1_4:48639549-48639568 | None:intergenic | 40.0% | |
| !! | AGAATGCTTCTAGCTTTGAG+TGG | + | chr1_4:48639663-48639682 | Msa0166990:intron | 40.0% |
| TGACATTGCAGACAAGTAGA+AGG | + | chr1_4:48639694-48639713 | Msa0166990:intron | 40.0% | |
| GACATTGCAGACAAGTAGAA+GGG | + | chr1_4:48639695-48639714 | Msa0166990:intron | 40.0% | |
| ! | CCAACGGTCAGCAATTTTAT+AGG | - | chr1_4:48639748-48639767 | None:intergenic | 40.0% |
| CCTATAAAATTGCTGACCGT+TGG | + | chr1_4:48639745-48639764 | Msa0166990:intron | 40.0% | |
| TAATGCAGATGGATGAAACC+TGG | - | chr1_4:48639931-48639950 | None:intergenic | 40.0% | |
| !!! | CACATGCATAGTGGTTTTAG+GGG | - | chr1_4:48640032-48640051 | None:intergenic | 40.0% |
| GAACTGCTTATTCAACGTCA+AGG | - | chr1_4:48640368-48640387 | None:intergenic | 40.0% | |
| TGTGAGGAGTTTGGAGAAAG+TGG | - | chr1_4:48636726-48636745 | None:intergenic | 45.0% | |
| AAATGAGGGAGACAGACGTT+GGG | - | chr1_4:48636754-48636773 | None:intergenic | 45.0% | |
| GAGGATGAAGTGTAGAAGGA+TGG | - | chr1_4:48636777-48636796 | None:intergenic | 45.0% | |
| ATCGGAGGATGAAGTGTAGA+AGG | - | chr1_4:48636781-48636800 | None:intergenic | 45.0% | |
| CTCTCAGAAGAATCCACAGT+GGG | + | chr1_4:48636871-48636890 | Msa0166990:CDS | 45.0% | |
| TAAGCACATGAAGATGCCGT+AGG | - | chr1_4:48636906-48636925 | None:intergenic | 45.0% | |
| !! | AGCAGCGTTGGTGTTATACT+TGG | - | chr1_4:48637098-48637117 | None:intergenic | 45.0% |
| GTATAACACCAACGCTGCTT+CGG | + | chr1_4:48637099-48637118 | Msa0166990:CDS | 45.0% | |
| CTGCTTCGGTTTATCGTGAT+CGG | + | chr1_4:48637113-48637132 | Msa0166990:CDS | 45.0% | |
| GGTTTATCGTGATCGGATTC+AGG | + | chr1_4:48637120-48637139 | Msa0166990:CDS | 45.0% | |
| ! | TGATCGGATTCAGGCTTTGT+CGG | + | chr1_4:48637129-48637148 | Msa0166990:CDS | 45.0% |
| AAATTCTCCTTCACAACCGG+AGG | - | chr1_4:48637175-48637194 | None:intergenic | 45.0% | |
| CCGGTTGTGAAGGAGAATTT+AGG | + | chr1_4:48637175-48637194 | Msa0166990:CDS | 45.0% | |
| TGATGTGAGGAGTAAGTCGA+CGG | + | chr1_4:48637285-48637304 | Msa0166990:CDS | 45.0% | |
| TTTAGGAATTTGAACGGCGG+TGG | + | chr1_4:48637313-48637332 | Msa0166990:CDS | 45.0% | |
| CGACGGAGGATATTTATACG+CGG | + | chr1_4:48637356-48637375 | Msa0166990:CDS | 45.0% | |
| ! | GGGGATTGGTAAGTTGTCAT+TGG | + | chr1_4:48637770-48637789 | Msa0166990:intron | 45.0% |
| TGTTTCACGGAATGCACCTT+AGG | + | chr1_4:48637918-48637937 | Msa0166990:intron | 45.0% | |
| GTTTCACGGAATGCACCTTA+GGG | + | chr1_4:48637919-48637938 | Msa0166990:intron | 45.0% | |
| TCAGATAGCTGATATAGCCG+TGG | + | chr1_4:48638001-48638020 | Msa0166990:intron | 45.0% | |
| TCTCGGCATATCACAAATCG+TGG | - | chr1_4:48638048-48638067 | None:intergenic | 45.0% | |
| TTTAGCATAGTGTGGGGTAG+AGG | + | chr1_4:48638436-48638455 | Msa0166990:intron | 45.0% | |
| TAGCAGACGTATCTTGATGC+CGG | - | chr1_4:48638623-48638642 | None:intergenic | 45.0% | |
| ! | TTGTTTCAGGTCAAGGAAGG+CGG | + | chr1_4:48638707-48638726 | Msa0166990:intron | 45.0% |
| GGAAGGCGGTTATGATCAAA+AGG | + | chr1_4:48638721-48638740 | Msa0166990:CDS | 45.0% | |
| ! | CAGAGATTGGTCAAAGGACA+TGG | + | chr1_4:48638780-48638799 | Msa0166990:CDS | 45.0% |
| ! | GAGATTGGTCAAAGGACATG+GGG | + | chr1_4:48638782-48638801 | Msa0166990:CDS | 45.0% |
| GGACATGGGGTTTAATGAAG+GGG | + | chr1_4:48638795-48638814 | Msa0166990:CDS | 45.0% | |
| GACATGGGGTTTAATGAAGG+GGG | + | chr1_4:48638796-48638815 | Msa0166990:CDS | 45.0% | |
| ! | TTTGGCTTCACAGAAGGTTG+AGG | + | chr1_4:48638826-48638845 | Msa0166990:CDS | 45.0% |
| CTCAAACTCTTGGGACGATT+GGG | + | chr1_4:48639006-48639025 | Msa0166990:CDS | 45.0% | |
| TCAAACTCTTGGGACGATTG+GGG | + | chr1_4:48639007-48639026 | Msa0166990:CDS | 45.0% | |
| GGGCCAAAAAGATAGTTGGA+AGG | + | chr1_4:48639027-48639046 | Msa0166990:CDS | 45.0% | |
| GGACCAACTCCTTATTCATC+TGG | + | chr1_4:48639067-48639086 | Msa0166990:CDS | 45.0% | |
| CCACCAGATGAATAAGGAGT+TGG | - | chr1_4:48639073-48639092 | None:intergenic | 45.0% | |
| CCAACTCCTTATTCATCTGG+TGG | + | chr1_4:48639070-48639089 | Msa0166990:CDS | 45.0% | |
| TACTCACAATCCCAGCTCTT+GGG | + | chr1_4:48639102-48639121 | Msa0166990:CDS | 45.0% | |
| ! | GGACCACAAAGATTCTAGGA+AGG | + | chr1_4:48639132-48639151 | Msa0166990:CDS | 45.0% |
| GGAAGAACCAGCTAAAGCAT+CGG | + | chr1_4:48639153-48639172 | Msa0166990:CDS | 45.0% | |
| CCCACAATAATGATGCTGGT+TGG | + | chr1_4:48639179-48639198 | Msa0166990:CDS | 45.0% | |
| CCCAACCAGCATCATTATTG+TGG | - | chr1_4:48639183-48639202 | None:intergenic | 45.0% | |
| ! | AATAATGATGCTGGTTGGGC+TGG | + | chr1_4:48639184-48639203 | Msa0166990:CDS | 45.0% |
| ATGGGAAATCAGATGACGCT+TGG | + | chr1_4:48639281-48639300 | Msa0166990:CDS | 45.0% | |
| AAATCAGATGACGCTTGGAC+AGG | + | chr1_4:48639286-48639305 | Msa0166990:CDS | 45.0% | |
| AATCAGATGACGCTTGGACA+GGG | + | chr1_4:48639287-48639306 | Msa0166990:CDS | 45.0% | |
| CGAGACCAAGAGAAGAGATT+GGG | - | chr1_4:48639492-48639511 | None:intergenic | 45.0% | |
| ACGAGACCAAGAGAAGAGAT+TGG | - | chr1_4:48639493-48639512 | None:intergenic | 45.0% | |
| CTGAAGTTCAGTGGTCATGT+AGG | - | chr1_4:48639519-48639538 | None:intergenic | 45.0% | |
| CTACATGACCACTGAACTTC+AGG | + | chr1_4:48639517-48639536 | Msa0166990:intron | 45.0% | |
| !! | TGCTTCTAGCTTTGAGTGGA+AGG | + | chr1_4:48639667-48639686 | Msa0166990:intron | 45.0% |
| !! | TCTAGCTTTGAGTGGAAGGT+AGG | + | chr1_4:48639671-48639690 | Msa0166990:intron | 45.0% |
| CTGCATCATATGACCATGTC+AGG | - | chr1_4:48639808-48639827 | None:intergenic | 45.0% | |
| CAATGGAACAATCTCGAGAC+TGG | - | chr1_4:48639954-48639973 | None:intergenic | 45.0% | |
| CAGTCTCGAGATTGTTCCAT+TGG | + | chr1_4:48639952-48639971 | Msa0166990:three_prime_UTR | 45.0% | |
| CAGTCCTTTCACATGCATAG+TGG | - | chr1_4:48640041-48640060 | None:intergenic | 45.0% | |
| !! | AACATTTTGGGAACTCCGGT+TGG | + | chr1_4:48640175-48640194 | Msa0166990:three_prime_UTR | 45.0% |
| !!! | AATAAAAATATCATAATTTT+TGG | + | chr1_4:48639904-48639923 | Msa0166990:intron | 5.0% |
| GAAATGAGGGAGACAGACGT+TGG | - | chr1_4:48636755-48636774 | None:intergenic | 50.0% | |
| CTTCATCCTCCGATCATCCA+TGG | + | chr1_4:48636787-48636806 | Msa0166990:exon | 50.0% | |
| ATCGACGCAGATCTTGTTGC+CGG | - | chr1_4:48636849-48636868 | None:intergenic | 50.0% | |
| GCTCTCAGAAGAATCCACAG+TGG | + | chr1_4:48636870-48636889 | Msa0166990:CDS | 50.0% | |
| AGATGTGAACACCGAGACCA+CGG | - | chr1_4:48636946-48636965 | None:intergenic | 50.0% | |
| !! | AAGCATCCATGGTGACGGAT+CGG | - | chr1_4:48636976-48636995 | None:intergenic | 50.0% |
| GATTTCGGACCAAGCATCCA+TGG | - | chr1_4:48636987-48637006 | None:intergenic | 50.0% | |
| ACGATAAACCGAAGCAGCGT+TGG | - | chr1_4:48637110-48637129 | None:intergenic | 50.0% | |
| ! | TTCAGGCTTTGTCGGAAGGT+CGG | + | chr1_4:48637137-48637156 | Msa0166990:CDS | 50.0% |
| AGTCGCCGGAGTAATGATTC+CGG | + | chr1_4:48637226-48637245 | Msa0166990:CDS | 50.0% | |
| ATGATTCCGGCTGGGATGAT+TGG | + | chr1_4:48637239-48637258 | Msa0166990:CDS | 50.0% | |
| TGATTCCGGCTGGGATGATT+GGG | + | chr1_4:48637240-48637259 | Msa0166990:CDS | 50.0% | |
| TGGGATGATTGGGATAGGGA+AGG | + | chr1_4:48637250-48637269 | Msa0166990:CDS | 50.0% | |
| GATGATTGGGATAGGGAAGG+AGG | + | chr1_4:48637253-48637272 | Msa0166990:CDS | 50.0% | |
| TTGGGATAGGGAAGGAGGTT+CGG | + | chr1_4:48637258-48637277 | Msa0166990:CDS | 50.0% | |
| GATGTGAGGAGTAAGTCGAC+GGG | + | chr1_4:48637286-48637305 | Msa0166990:CDS | 50.0% | |
| ATGTGAGGAGTAAGTCGACG+GGG | + | chr1_4:48637287-48637306 | Msa0166990:CDS | 50.0% | |
| ! | GTAAGTCGACGGGGGATTTT+AGG | + | chr1_4:48637296-48637315 | Msa0166990:CDS | 50.0% |
| GTCGCAATTGGAAGCTTCTG+CGG | + | chr1_4:48637378-48637397 | Msa0166990:CDS | 50.0% | |
| !! | AGATGGCGGAGAATGAGTCA+AGG | + | chr1_4:48637428-48637447 | Msa0166990:CDS | 50.0% |
| ACATACTTCCCACCTTGCGA+CGG | - | chr1_4:48637469-48637488 | None:intergenic | 50.0% | |
| ! | TCGCAAGGTGGGAAGTATGT+TGG | + | chr1_4:48637469-48637488 | Msa0166990:CDS | 50.0% |
| ! | CGCAAGGTGGGAAGTATGTT+GGG | + | chr1_4:48637470-48637489 | Msa0166990:CDS | 50.0% |
| ! | GGTGGGAAGTATGTTGGGTT+CGG | + | chr1_4:48637475-48637494 | Msa0166990:CDS | 50.0% |
| ! | TTGCTCCTCTGTGAAGGCAT+CGG | - | chr1_4:48637508-48637527 | None:intergenic | 50.0% |
| ! | TGTGGATTGCTCCTCTGTGA+AGG | - | chr1_4:48637514-48637533 | None:intergenic | 50.0% |
| GCTGCTAATGCTGTTCAGAC+TGG | + | chr1_4:48637804-48637823 | Msa0166990:CDS | 50.0% | |
| ! | ATCCACTGTTCTGAGCAACG+AGG | - | chr1_4:48638379-48638398 | None:intergenic | 50.0% |
| CCTTCATGATTGTCTCTGGC+CGG | + | chr1_4:48638601-48638620 | Msa0166990:intron | 50.0% | |
| GGGTTTAATGAAGGGGGTCA+TGG | + | chr1_4:48638802-48638821 | Msa0166990:CDS | 50.0% | |
| AATGAAGGGGGTCATGGCTT+TGG | + | chr1_4:48638808-48638827 | Msa0166990:CDS | 50.0% | |
| !! | CATGGCTTTGGCTTCACAGA+AGG | + | chr1_4:48638820-48638839 | Msa0166990:CDS | 50.0% |
| GCTCAAACTCTTGGGACGAT+TGG | + | chr1_4:48639005-48639024 | Msa0166990:CDS | 50.0% | |
| GACTGCCCACCAGATGAATA+AGG | - | chr1_4:48639079-48639098 | None:intergenic | 50.0% | |
| ! | TATTCATCTGGTGGGCAGTC+TGG | + | chr1_4:48639079-48639098 | Msa0166990:CDS | 50.0% |
| GTACTCACAATCCCAGCTCT+TGG | + | chr1_4:48639101-48639120 | Msa0166990:CDS | 50.0% | |
| ATCCCAGCTCTTGGGATGAT+TGG | + | chr1_4:48639110-48639129 | Msa0166990:CDS | 50.0% | |
| TCCCAGCTCTTGGGATGATT+GGG | + | chr1_4:48639111-48639130 | Msa0166990:CDS | 50.0% | |
| TCCCAATCATCCCAAGAGCT+GGG | - | chr1_4:48639115-48639134 | None:intergenic | 50.0% | |
| GCTCCCCACAATAATGATGC+TGG | + | chr1_4:48639175-48639194 | Msa0166990:CDS | 50.0% | |
| ATCAGATGACGCTTGGACAG+GGG | + | chr1_4:48639288-48639307 | Msa0166990:CDS | 50.0% | |
| GCATTCTCTGCACTTAGAGC+TGG | - | chr1_4:48639650-48639669 | None:intergenic | 50.0% | |
| ! | CTCGAGACTGGTAATGCAGA+TGG | - | chr1_4:48639942-48639961 | None:intergenic | 50.0% |
| CTTTCGGACTGATGACATGC+AGG | + | chr1_4:48639993-48640012 | Msa0166990:three_prime_UTR | 50.0% | |
| ATGACATGCAGGCAAAGCCA+TGG | + | chr1_4:48640004-48640023 | Msa0166990:three_prime_UTR | 50.0% | |
| !!! | TAGTGGTTTTAGGGGCACCA+TGG | - | chr1_4:48640024-48640043 | None:intergenic | 50.0% |
| TGGGTGAGGTGTGAGGAGTT+TGG | - | chr1_4:48636735-48636754 | None:intergenic | 55.0% | |
| CATCCTCCGATCATCCATGG+CGG | + | chr1_4:48636790-48636809 | Msa0166990:exon | 55.0% | |
| GTGATGCCGCCATGGATGAT+CGG | - | chr1_4:48636799-48636818 | None:intergenic | 55.0% | |
| GATCATCCATGGCGGCATCA+CGG | + | chr1_4:48636798-48636817 | Msa0166990:exon | 55.0% | |
| ! | TGTTGCCGGGTTGGGATTGA+AGG | - | chr1_4:48636835-48636854 | None:intergenic | 55.0% |
| GCAGATCTTGTTGCCGGGTT+GGG | - | chr1_4:48636843-48636862 | None:intergenic | 55.0% | |
| TCGACGCAGATCTTGTTGCC+GGG | - | chr1_4:48636848-48636867 | None:intergenic | 55.0% | |
| TAGGAGACTGATGCCCACTG+TGG | - | chr1_4:48636887-48636906 | None:intergenic | 55.0% | |
| CAGTGGGCATCAGTCTCCTA+CGG | + | chr1_4:48636887-48636906 | Msa0166990:CDS | 55.0% | |
| GAATGCTCCGGAAAACACCG+TGG | + | chr1_4:48636926-48636945 | Msa0166990:CDS | 55.0% | |
| TCCGGAAAACACCGTGGTCT+CGG | + | chr1_4:48636932-48636951 | Msa0166990:CDS | 55.0% | |
| ! | ACCGAGACCACGGTGTTTTC+CGG | - | chr1_4:48636936-48636955 | None:intergenic | 55.0% |
| GATCCGTCACCATGGATGCT+TGG | + | chr1_4:48636975-48636994 | Msa0166990:CDS | 55.0% | |
| GGACCAAGCATCCATGGTGA+CGG | - | chr1_4:48636981-48637000 | None:intergenic | 55.0% | |
| ! | CGGATTCAGGCTTTGTCGGA+AGG | + | chr1_4:48637133-48637152 | Msa0166990:CDS | 55.0% |
| CCCAGCCGGAATCATTACTC+CGG | - | chr1_4:48637234-48637253 | None:intergenic | 55.0% | |
| CCGGAGTAATGATTCCGGCT+GGG | + | chr1_4:48637231-48637250 | Msa0166990:CDS | 55.0% | |
| CCTATCCCAATCATCCCAGC+CGG | - | chr1_4:48637248-48637267 | None:intergenic | 55.0% | |
| CGGCTGGGATGATTGGGATA+GGG | + | chr1_4:48637246-48637265 | Msa0166990:CDS | 55.0% | |
| TGGGATAGGGAAGGAGGTTC+GGG | + | chr1_4:48637259-48637278 | Msa0166990:CDS | 55.0% | |
| TGTGAGGAGTAAGTCGACGG+GGG | + | chr1_4:48637288-48637307 | Msa0166990:CDS | 55.0% | |
| GCAATTGGAAGCTTCTGCGG+CGG | + | chr1_4:48637381-48637400 | Msa0166990:CDS | 55.0% | |
| CAATTGGAAGCTTCTGCGGC+GGG | + | chr1_4:48637382-48637401 | Msa0166990:CDS | 55.0% | |
| GAGAATGAGTCAAGGCCGGA+AGG | + | chr1_4:48637436-48637455 | Msa0166990:CDS | 55.0% | |
| CTAGTCCGATGCCTTCACAG+AGG | + | chr1_4:48637500-48637519 | Msa0166990:CDS | 55.0% | |
| ! | TACCGGTGTCAGTGTTGTGC+CGG | + | chr1_4:48637667-48637686 | Msa0166990:intron | 55.0% |
| TGCCTCGTTGCTCAGAACAG+TGG | + | chr1_4:48638374-48638393 | Msa0166990:intron | 55.0% | |
| CCGGCCAGAGACAATCATGA+AGG | - | chr1_4:48638604-48638623 | None:intergenic | 55.0% | |
| GTCCCAATCATCCCAAGAGC+TGG | - | chr1_4:48639116-48639135 | None:intergenic | 55.0% | |
| TCAGATGACGCTTGGACAGG+GGG | + | chr1_4:48639289-48639308 | Msa0166990:CDS | 55.0% | |
| CAGACGTTGGGTGAGGTGTG+AGG | - | chr1_4:48636742-48636761 | None:intergenic | 60.0% | |
| AGGGAGACAGACGTTGGGTG+AGG | - | chr1_4:48636749-48636768 | None:intergenic | 60.0% | |
| ATGCCGCCATGGATGATCGG+AGG | - | chr1_4:48636796-48636815 | None:intergenic | 60.0% | |
| ! | CGGGTTGGGATTGAAGGTCC+CGG | - | chr1_4:48636829-48636848 | None:intergenic | 60.0% |
| CGGGACCTTCAATCCCAACC+CGG | + | chr1_4:48636827-48636846 | Msa0166990:CDS | 60.0% | |
| CGCAGATCTTGTTGCCGGGT+TGG | - | chr1_4:48636844-48636863 | None:intergenic | 60.0% | |
| !! | CATGGTGACGGATCGGACGA+AGG | - | chr1_4:48636969-48636988 | None:intergenic | 60.0% |
| CTTCGTCCGATCCGTCACCA+TGG | + | chr1_4:48636967-48636986 | Msa0166990:CDS | 60.0% | |
| CTTTGTCGGAAGGTCGGTCG+TGG | + | chr1_4:48637143-48637162 | Msa0166990:CDS | 60.0% | |
| GCGTGATCCTCCGGTTGTGA+AGG | + | chr1_4:48637165-48637184 | Msa0166990:CDS | 60.0% | |
| TTCAAAGGGAAGGCCGCCGA+TGG | + | chr1_4:48637198-48637217 | Msa0166990:CDS | 60.0% | |
| TCAAAGGGAAGGCCGCCGAT+GGG | + | chr1_4:48637199-48637218 | Msa0166990:CDS | 60.0% | |
| GCCGGAGTAATGATTCCGGC+TGG | + | chr1_4:48637230-48637249 | Msa0166990:CDS | 60.0% | |
| CCGGCTGGGATGATTGGGAT+AGG | + | chr1_4:48637245-48637264 | Msa0166990:CDS | 60.0% | |
| GATAGGGAAGGAGGTTCGGG+TGG | + | chr1_4:48637262-48637281 | Msa0166990:CDS | 60.0% | |
| ! | GAGGTTCGGGTGGTGATGTG+AGG | + | chr1_4:48637272-48637291 | Msa0166990:CDS | 60.0% |
| TTTGAACGGCGGTGGTGCAC+CGG | + | chr1_4:48637321-48637340 | Msa0166990:CDS | 60.0% | |
| AGCTTCTGCGGCGGGTAAAG+AGG | + | chr1_4:48637390-48637409 | Msa0166990:CDS | 60.0% | |
| GCTTCTGCGGCGGGTAAAGA+GGG | + | chr1_4:48637391-48637410 | Msa0166990:CDS | 60.0% | |
| GGCGGAGAATGAGTCAAGGC+CGG | + | chr1_4:48637432-48637451 | Msa0166990:CDS | 60.0% | |
| TGCGACGGTGGAAGTCCTTC+CGG | - | chr1_4:48637454-48637473 | None:intergenic | 60.0% | |
| GAAGGACTTCCACCGTCGCA+AGG | + | chr1_4:48637454-48637473 | Msa0166990:CDS | 60.0% | |
| GACTTCCACCGTCGCAAGGT+GGG | + | chr1_4:48637458-48637477 | Msa0166990:CDS | 60.0% | |
| TACTTCCCACCTTGCGACGG+TGG | - | chr1_4:48637466-48637485 | None:intergenic | 60.0% | |
| ! | ACCGGTGTCAGTGTTGTGCC+GGG | + | chr1_4:48637668-48637687 | Msa0166990:intron | 60.0% |
| ACCCGGCACAACACTGACAC+CGG | - | chr1_4:48637672-48637691 | None:intergenic | 60.0% | |
| TGGGGAGCCGATGCTTTAGC+TGG | - | chr1_4:48639163-48639182 | None:intergenic | 60.0% | |
| !! | ATGATGCTGGTTGGGCTGGC+TGG | + | chr1_4:48639188-48639207 | Msa0166990:CDS | 60.0% |
| !! | TGATGCTGGTTGGGCTGGCT+GGG | + | chr1_4:48639189-48639208 | Msa0166990:CDS | 60.0% |
| ACAGGGGGTGGCTTCCTCTA+AGG | + | chr1_4:48639304-48639323 | Msa0166990:CDS | 60.0% | |
| CATCCATGGCGGCATCACGG+CGG | + | chr1_4:48636801-48636820 | Msa0166990:exon | 65.0% | |
| TCGGTCGTGGCGTGATCCTC+CGG | + | chr1_4:48637156-48637175 | Msa0166990:CDS | 65.0% | |
| CAAAGGGAAGGCCGCCGATG+GGG | + | chr1_4:48637200-48637219 | Msa0166990:CDS | 65.0% | |
| ACCGGCGAGATCGAGGTCGA+CGG | + | chr1_4:48637339-48637358 | Msa0166990:CDS | 65.0% | |
| TCCGTCGACCTCGATCTCGC+CGG | - | chr1_4:48637343-48637362 | None:intergenic | 65.0% | |
| GGACTTCCACCGTCGCAAGG+TGG | + | chr1_4:48637457-48637476 | Msa0166990:CDS | 65.0% | |
| AGCATGCGCGCACACACACC+CGG | - | chr1_4:48637689-48637708 | None:intergenic | 65.0% | |
| GATGACGCTTGGACAGGGGG+TGG | + | chr1_4:48639292-48639311 | Msa0166990:CDS | 65.0% | |
| CTCCGGCGACTCTGCCCCAT+CGG | - | chr1_4:48637217-48637236 | None:intergenic | 70.0% | |
| ! | GTGGTGCACCGGCGAGATCG+AGG | + | chr1_4:48637332-48637351 | Msa0166990:CDS | 70.0% |
| GGCGAGATCGAGGTCGACGG+AGG | + | chr1_4:48637342-48637361 | Msa0166990:CDS | 70.0% | |
| GAGCCGCCGTGATGCCGCCA+TGG | - | chr1_4:48636807-48636826 | None:intergenic | 75.0% | |
| TGGCGGCATCACGGCGGCTC+CGG | + | chr1_4:48636807-48636826 | Msa0166990:CDS | 75.0% | |
| CGGCGACTCTGCCCCATCGG+CGG | - | chr1_4:48637214-48637233 | None:intergenic | 75.0% | |
| CGCCGATGGGGCAGAGTCGC+CGG | + | chr1_4:48637212-48637231 | Msa0166990:CDS | 75.0% | |
| ! | GGCGGCATCACGGCGGCTCC+GGG | + | chr1_4:48636808-48636827 | Msa0166990:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 48636714 | 48640402 | 48636714 | ID=Msa0166990;Name=Msa0166990 |
| chr1_4 | mRNA | 48636714 | 48640402 | 48636714 | ID=Msa0166990-mRNA-1;Parent=Msa0166990;Name=Msa0166990-mRNA-1;_AED=0.09;_eAED=0.09;_QI=92|1|1|1|0.66|0.5|4|472|481 |
| chr1_4 | exon | 48636714 | 48637564 | 48636714 | ID=Msa0166990-mRNA-1:exon:14184;Parent=Msa0166990-mRNA-1 |
| chr1_4 | exon | 48637771 | 48637848 | 48637771 | ID=Msa0166990-mRNA-1:exon:14185;Parent=Msa0166990-mRNA-1 |
| chr1_4 | exon | 48638716 | 48639325 | 48638716 | ID=Msa0166990-mRNA-1:exon:14186;Parent=Msa0166990-mRNA-1 |
| chr1_4 | exon | 48639932 | 48640402 | 48639932 | ID=Msa0166990-mRNA-1:exon:14187;Parent=Msa0166990-mRNA-1 |
| chr1_4 | five_prime_UTR | 48636714 | 48636805 | 48636714 | ID=Msa0166990-mRNA-1:five_prime_utr;Parent=Msa0166990-mRNA-1 |
| chr1_4 | CDS | 48636806 | 48637564 | 48636806 | ID=Msa0166990-mRNA-1:cds;Parent=Msa0166990-mRNA-1 |
| chr1_4 | CDS | 48637771 | 48637848 | 48637771 | ID=Msa0166990-mRNA-1:cds;Parent=Msa0166990-mRNA-1 |
| chr1_4 | CDS | 48638716 | 48639324 | 48638716 | ID=Msa0166990-mRNA-1:cds;Parent=Msa0166990-mRNA-1 |
| chr1_4 | three_prime_UTR | 48639325 | 48639325 | 48639325 | ID=Msa0166990-mRNA-1:three_prime_utr;Parent=Msa0166990-mRNA-1 |
| chr1_4 | three_prime_UTR | 48639932 | 48640402 | 48639932 | ID=Msa0166990-mRNA-1:three_prime_utr;Parent=Msa0166990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
