Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0934230 | sp|Q94AY1|NADB_ARATH | 58.199 | 311 | 77 | 6 | 34 | 292 | 44 | 353 | 1.74e-104 | 321 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0934230 | G7KIS1 | 75.637 | 353 | 25 | 4 | 1 | 292 | 1 | 353 | 3.63e-175 | 508 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0455230 | Msa0934230 | 0.803865 | 2.842371e-49 | -8.615850e-47 |
| Msa0363460 | Msa0934230 | 0.803340 | 3.652845e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0934230 | MtrunA17_Chr6g0450691 | 75.637 | 353 | 25 | 4 | 1 | 292 | 38 | 390 | 3.21e-178 | 508 |
| Msa0934230 | MtrunA17_Chr5g0403941 | 29.524 | 210 | 99 | 7 | 123 | 288 | 97 | 301 | 1.99e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0934230 | AT5G14760.1 | 58.199 | 311 | 77 | 6 | 34 | 292 | 44 | 353 | 1.77e-105 | 321 |
| Msa0934230 | AT2G18450.1 | 30.047 | 213 | 96 | 8 | 122 | 288 | 102 | 307 | 7.04e-12 | 66.2 |
| Msa0934230 | AT5G66760.1 | 30.189 | 212 | 95 | 8 | 123 | 288 | 105 | 309 | 1.16e-11 | 65.5 |
Find 69 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGCTCGAAGTTGCAAAATA+TGG | 0.271252 | 6_3:+3926827 | Msa0934230:CDS |
| TGTGTATTGTTAGGTCTAAA+AGG | 0.291778 | 6_3:+3926651 | Msa0934230:intron |
| TTTCCATGGCTAAATTATAA+AGG | 0.315559 | 6_3:-3929476 | None:intergenic |
| GCTTAGCCCTTTAGATTCAT+TGG | 0.319085 | 6_3:+3926924 | Msa0934230:CDS |
| CGTAGGCTCGGTTGGTTTAA+CGG | 0.358893 | 6_3:-3929406 | None:intergenic |
| TATAGATCTTCTCACTTGTC+AGG | 0.376969 | 6_3:+3928093 | Msa0934230:CDS |
| TGAGAAGATCTATAGCAAAA+TGG | 0.391472 | 6_3:-3928084 | None:intergenic |
| GTCATTGGGAGTGGAATTGC+TGG | 0.397418 | 6_3:+3926794 | Msa0934230:CDS |
| GTAGGCTCGGTTGGTTTAAC+GGG | 0.397527 | 6_3:-3929405 | None:intergenic |
| GATTGAGCGCGCTCTATTGA+AGG | 0.431605 | 6_3:+3928024 | Msa0934230:CDS |
| AAGGCGACTTTACTAGCGTC+AGG | 0.435341 | 6_3:+3928438 | Msa0934230:CDS |
| TTCTGATATCTGAAGCTGTA+AGG | 0.435505 | 6_3:+3929439 | Msa0934230:CDS |
| GACTCTCCAATGAATCTAAA+GGG | 0.456103 | 6_3:-3926930 | None:intergenic |
| TGACTCTCCAATGAATCTAA+AGG | 0.467422 | 6_3:-3926931 | None:intergenic |
| GGCCTCCACTTCATAAGAAT+CGG | 0.469206 | 6_3:+3926714 | Msa0934230:CDS |
| GCATTATCCGTAGGCTCGGT+TGG | 0.484879 | 6_3:-3929414 | None:intergenic |
| CCGACTGCATTAGCTGATGA+AGG | 0.493989 | 6_3:+3929378 | Msa0934230:CDS |
| TGCAATGTGCCCCTTCCAGC+AGG | 0.503184 | 6_3:-3926050 | None:intergenic |
| GTGTATTGTTAGGTCTAAAA+GGG | 0.506589 | 6_3:+3926652 | Msa0934230:intron |
| ATGGCAACTTGTATACCTGC+TGG | 0.519477 | 6_3:+3926035 | Msa0934230:CDS |
| TTTGTGATGAAGAGAGTGTC+CGG | 0.522063 | 6_3:+3926986 | Msa0934230:CDS |
| AGTTTCCGATTCTTATGAAG+TGG | 0.522879 | 6_3:-3926719 | None:intergenic |
| CAACTTGTATACCTGCTGGA+AGG | 0.530597 | 6_3:+3926039 | Msa0934230:CDS |
| AACTTGTATACCTGCTGGAA+GGG | 0.531770 | 6_3:+3926040 | Msa0934230:CDS |
| TTTGTGCATCTGCAGTACCT+TGG | 0.533283 | 6_3:-3926678 | None:intergenic |
| AAGTGTGTCAACACCAAGAC+AGG | 0.536082 | 6_3:-3928285 | None:intergenic |
| ATGAAGGACACCATTGTAGC+TGG | 0.536650 | 6_3:+3926955 | Msa0934230:CDS |
| TTTATAATTTAGCCATGGAA+AGG | 0.537153 | 6_3:+3929478 | Msa0934230:CDS |
| CGTTAAACCAACCGAGCCTA+CGG | 0.538662 | 6_3:+3929407 | Msa0934230:CDS |
| CAGCTTTGTTATCACTGCAA+CGG | 0.543358 | 6_3:-3926852 | None:intergenic |
| TTACAGAGTGACAGACTACA+AGG | 0.544296 | 6_3:+3926073 | Msa0934230:CDS |
| TGTAATACAAATTATGCTCA+AGG | 0.544971 | 6_3:+3926886 | Msa0934230:CDS |
| TCTGATATCTGAAGCTGTAA+GGG | 0.547002 | 6_3:+3929440 | Msa0934230:CDS |
| AGATCTGATATAACCTGTCT+TGG | 0.547275 | 6_3:+3928272 | Msa0934230:CDS |
| GGTGGTAAGATTTCTTTCAA+AGG | 0.550563 | 6_3:+3928419 | Msa0934230:intron |
| TCCTAAAACTACGAATCCGT+TGG | 0.553524 | 6_3:+3928479 | Msa0934230:CDS |
| CATCCTTTATAATTTAGCCA+TGG | 0.563439 | 6_3:+3929473 | Msa0934230:CDS |
| GTTCATGCTGCTGATATGAC+AGG | 0.564443 | 6_3:+3927995 | Msa0934230:CDS |
| TTTGTGCAGAGACATATCAA+TGG | 0.568034 | 6_3:+3926016 | None:intergenic |
| TTCCGATTCTTATGAAGTGG+AGG | 0.570706 | 6_3:-3926716 | None:intergenic |
| AAATGCATTATCCGTAGGCT+CGG | 0.578010 | 6_3:-3929418 | None:intergenic |
| TCTGAAGCTGTAAGGGGTGA+TGG | 0.578436 | 6_3:+3929447 | Msa0934230:CDS |
| CAACTTCGAGCGCATATCGA+AGG | 0.579394 | 6_3:-3926817 | None:intergenic |
| TAGGTCTAAAAGGGTATCCA+AGG | 0.581651 | 6_3:+3926661 | Msa0934230:intron |
| TCGTTTGATCATGAGGAAGA+TGG | 0.584553 | 6_3:+3927926 | Msa0934230:intron |
| AAGATAAGCACCAGCTACAA+TGG | 0.593610 | 6_3:-3926965 | None:intergenic |
| AGCAATTCCACTCCCAATGA+CGG | 0.595127 | 6_3:-3926792 | None:intergenic |
| GGCGACTTTACTAGCGTCAG+GGG | 0.595378 | 6_3:+3928440 | Msa0934230:CDS |
| AACTTGCATCTAGCGAGGGA+GGG | 0.596532 | 6_3:+3927950 | Msa0934230:CDS |
| ACAAGGCATAAACCTTTCCA+TGG | 0.602312 | 6_3:-3929490 | None:intergenic |
| TAACTTGCATCTAGCGAGGG+AGG | 0.603097 | 6_3:+3927949 | Msa0934230:CDS |
| ACTTGTATACCTGCTGGAAG+GGG | 0.604022 | 6_3:+3926041 | Msa0934230:CDS |
| TTCATTGGAGAGTCACATGA+AGG | 0.607337 | 6_3:+3926939 | Msa0934230:CDS |
| CGACTGCATTAGCTGATGAA+GGG | 0.608795 | 6_3:+3929379 | Msa0934230:CDS |
| TTGCATCTAGCGAGGGAGGG+AGG | 0.609173 | 6_3:+3927953 | Msa0934230:CDS |
| AGGCGACTTTACTAGCGTCA+GGG | 0.609721 | 6_3:+3928439 | Msa0934230:CDS |
| CTGATATCTGAAGCTGTAAG+GGG | 0.611963 | 6_3:+3929441 | Msa0934230:CDS |
| CCTTCATCAGCTAATGCAGT+CGG | 0.612603 | 6_3:-3929378 | None:intergenic |
| TTGTGATGAAGAGAGTGTCC+GGG | 0.613838 | 6_3:+3926987 | Msa0934230:CDS |
| TAATTTGTATTACATTCATG+AGG | 0.614580 | 6_3:-3926877 | None:intergenic |
| CATCAGCTAATGCAGTCGGA+TGG | 0.621314 | 6_3:-3929374 | None:intergenic |
| ATGGTAACTTGCATCTAGCG+AGG | 0.628012 | 6_3:+3927945 | Msa0934230:CDS |
| TGGTAACTTGCATCTAGCGA+GGG | 0.632551 | 6_3:+3927946 | Msa0934230:CDS |
| ATCAGAAATGCATTATCCGT+AGG | 0.653001 | 6_3:-3929423 | None:intergenic |
| AATACAAATTATGCTCAAGG+TGG | 0.697654 | 6_3:+3926889 | Msa0934230:CDS |
| GAAGCTGTAAGGGGTGATGG+TGG | 0.705456 | 6_3:+3929450 | Msa0934230:CDS |
| ACTTAATACTGAAACCCTAG+AGG | 0.714441 | 6_3:+3928304 | Msa0934230:CDS |
| GCGACTTTACTAGCGTCAGG+GGG | 0.724080 | 6_3:+3928441 | Msa0934230:CDS |
| TACAGAGTGACAGACTACAA+GGG | 0.743097 | 6_3:+3926074 | Msa0934230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCCATTTTTTTTTATAAA+TGG | + | chr6_3:3927442-3927461 | Msa0934230:intron | 10.0% |
| !! | ATACCATTTATAAAAAAAAA+TGG | - | chr6_3:3927448-3927467 | None:intergenic | 10.0% |
| !!! | CCAATAATAATTTTTAAAAA+AGG | - | chr6_3:3929337-3929356 | None:intergenic | 10.0% |
| !!! | CCTTTTTTAAAAATTATTAT+TGG | + | chr6_3:3929334-3929353 | Msa0934230:intron | 10.0% |
| !! | ATTTGTAAATTGATGAAAAT+AGG | + | chr6_3:3927521-3927540 | Msa0934230:intron | 15.0% |
| !!! | TAATCTTTTTTAGCTTTTTT+AGG | + | chr6_3:3928398-3928417 | Msa0934230:intron | 15.0% |
| !!! | TTGGTTTATTTTCTATTTTT+AGG | + | chr6_3:3928553-3928572 | Msa0934230:intron | 15.0% |
| !!! | TAATTTGTATTACATTCATG+AGG | - | chr6_3:3926880-3926899 | None:intergenic | 20.0% |
| !! | TTGTTTGGATTGAATTATTT+GGG | - | chr6_3:3927301-3927320 | None:intergenic | 20.0% |
| !! | TTTGTTTGGATTGAATTATT+TGG | - | chr6_3:3927302-3927321 | None:intergenic | 20.0% |
| !!! | TAACTTTTGTACTTTTTTTC+AGG | + | chr6_3:3927850-3927869 | Msa0934230:intron | 20.0% |
| !! | TGTTCAAACACAAAAATATT+AGG | - | chr6_3:3928064-3928083 | None:intergenic | 20.0% |
| !!! | TGTTCTTTTTTTGTTCTTTT+TGG | + | chr6_3:3928118-3928137 | Msa0934230:intron | 20.0% |
| !! | TTATGTGTTAAGAAAATCTT+AGG | - | chr6_3:3928148-3928167 | None:intergenic | 20.0% |
| !! | TTAGAAAATGTATTCAATGA+TGG | - | chr6_3:3928374-3928393 | None:intergenic | 20.0% |
| !!! | TCTAGATTTTTATTTTTGAG+AGG | - | chr6_3:3928630-3928649 | None:intergenic | 20.0% |
| !! | TTAAAAATTATTATTGGTGC+AGG | + | chr6_3:3929340-3929359 | Msa0934230:intron | 20.0% |
| ! | ACTTACAAAAAGATCTTTCA+TGG | + | chr6_3:3926147-3926166 | Msa0934230:intron | 25.0% |
| ! | ATAACTCTTAATATGATTCC+TGG | - | chr6_3:3926186-3926205 | None:intergenic | 25.0% |
| !!! | TGTTTACAAGATTTTGATCA+AGG | + | chr6_3:3926329-3926348 | Msa0934230:intron | 25.0% |
| !! | TTTTACGAATGTAACCAAAA+TGG | - | chr6_3:3926416-3926435 | None:intergenic | 25.0% |
| !! | TTAATGATTTTCAGACGTTT+TGG | + | chr6_3:3926626-3926645 | Msa0934230:intron | 25.0% |
| !! | TAATGATTTTCAGACGTTTT+GGG | + | chr6_3:3926627-3926646 | Msa0934230:intron | 25.0% |
| !!! | GAAAAGTCAAAGTATTTTGT+AGG | - | chr6_3:3926773-3926792 | None:intergenic | 25.0% |
| ! | TGTAATACAAATTATGCTCA+AGG | + | chr6_3:3926886-3926905 | Msa0934230:CDS | 25.0% |
| ! | ACTTATATGGCAAAACTAAT+AGG | - | chr6_3:3927024-3927043 | None:intergenic | 25.0% |
| ! | AGTTCTTAGAATGACTTATA+TGG | - | chr6_3:3927037-3927056 | None:intergenic | 25.0% |
| ! | AATTATTTGGGCTTATTTAC+TGG | - | chr6_3:3927289-3927308 | None:intergenic | 25.0% |
| !! | CAAAGATAAAAGAGTTTGTT+TGG | - | chr6_3:3927316-3927335 | None:intergenic | 25.0% |
| ! | AGAATTGTGAATGTATCTTT+AGG | + | chr6_3:3927587-3927606 | Msa0934230:intron | 25.0% |
| ! | AAGTACAAAAGTTAATGCAA+TGG | - | chr6_3:3927844-3927863 | None:intergenic | 25.0% |
| ! | TTCTTAACACATAATGTTGA+TGG | + | chr6_3:3928154-3928173 | Msa0934230:intron | 25.0% |
| !!! | TCTTTTTTAGCTTTTTTAGG+TGG | + | chr6_3:3928401-3928420 | Msa0934230:intron | 25.0% |
| ! | AAGCAGAAAAATAGGAAATA+AGG | - | chr6_3:3928535-3928554 | None:intergenic | 25.0% |
| !!! | TTATTTCCTATTTTTCTGCT+TGG | + | chr6_3:3928534-3928553 | Msa0934230:intron | 25.0% |
| ! | AATAAACCAAGCAGAAAAAT+AGG | - | chr6_3:3928543-3928562 | None:intergenic | 25.0% |
| !! | ATTGTTTTCATACGTTATCA+TGG | + | chr6_3:3929134-3929153 | Msa0934230:intron | 25.0% |
| ! | CATGGTAAACATTTTAAACC+AGG | + | chr6_3:3926165-3926184 | Msa0934230:intron | 30.0% |
| ACTGAGAATACTATGTGTAA+AGG | - | chr6_3:3926306-3926325 | None:intergenic | 30.0% | |
| ! | AATGATTTTCAGACGTTTTG+GGG | + | chr6_3:3926628-3926647 | Msa0934230:intron | 30.0% |
| TGTGTATTGTTAGGTCTAAA+AGG | + | chr6_3:3926651-3926670 | Msa0934230:intron | 30.0% | |
| GTGTATTGTTAGGTCTAAAA+GGG | + | chr6_3:3926652-3926671 | Msa0934230:intron | 30.0% | |
| ATTTCCTCATGCAAAAAAGA+TGG | + | chr6_3:3926746-3926765 | Msa0934230:CDS | 30.0% | |
| AATACAAATTATGCTCAAGG+TGG | + | chr6_3:3926889-3926908 | Msa0934230:CDS | 30.0% | |
| ! | AAACTCTTTTATCTTTGACC+TGG | + | chr6_3:3927319-3927338 | Msa0934230:intron | 30.0% |
| ! | TGTATTTTGTCTGATATTCC+AGG | - | chr6_3:3927340-3927359 | None:intergenic | 30.0% |
| TTTCCAATGTTGTCAAATAG+TGG | + | chr6_3:3927631-3927650 | Msa0934230:intron | 30.0% | |
| TATCCACTATTTGACAACAT+TGG | - | chr6_3:3927637-3927656 | None:intergenic | 30.0% | |
| TTGCAGATCACAGAAAATAA+CGG | - | chr6_3:3927784-3927803 | None:intergenic | 30.0% | |
| ! | TATTTTCTGTGATCTGCAAT+TGG | + | chr6_3:3927785-3927804 | Msa0934230:intron | 30.0% |
| TGAGAAGATCTATAGCAAAA+TGG | - | chr6_3:3928087-3928106 | None:intergenic | 30.0% | |
| TTCAATGATGGCAGTAATTT+AGG | - | chr6_3:3928362-3928381 | None:intergenic | 30.0% | |
| TAGAAAAAGAGAACTACCAA+CGG | - | chr6_3:3928498-3928517 | None:intergenic | 30.0% | |
| ACTACTCAATAATTCCAGAA+TGG | - | chr6_3:3928676-3928695 | None:intergenic | 30.0% | |
| ATTATTGAGTAGTCATCAAG+TGG | + | chr6_3:3928683-3928702 | Msa0934230:intron | 30.0% | |
| !! | GACATGCTTTTTACTATAAC+AGG | + | chr6_3:3928925-3928944 | Msa0934230:intron | 30.0% |
| ! | ATTGACTCATTACCAATCAT+AGG | + | chr6_3:3929022-3929041 | Msa0934230:intron | 30.0% |
| TTGACTCATTACCAATCATA+GGG | + | chr6_3:3929023-3929042 | Msa0934230:intron | 30.0% | |
| ! | CTTTTTATCCTATCCAAACA+GGG | - | chr6_3:3929050-3929069 | None:intergenic | 30.0% |
| CATCCTTTATAATTTAGCCA+TGG | + | chr6_3:3929473-3929492 | Msa0934230:CDS | 30.0% | |
| TCATGAGAGTCATTTCTGAA+TGG | + | chr6_3:3926213-3926232 | Msa0934230:intron | 35.0% | |
| GATCAAGGAATTATGAGTAG+TGG | + | chr6_3:3926344-3926363 | Msa0934230:intron | 35.0% | |
| ! | TGAGTGTATGACATCCATTT+TGG | + | chr6_3:3926399-3926418 | Msa0934230:intron | 35.0% |
| AAGATTGTTGAAGCAACTTC+AGG | + | chr6_3:3926585-3926604 | Msa0934230:intron | 35.0% | |
| ! | TGCACAAATGTGAGTTTTCT+AGG | + | chr6_3:3926693-3926712 | Msa0934230:CDS | 35.0% |
| AGTTTCCGATTCTTATGAAG+TGG | - | chr6_3:3926722-3926741 | None:intergenic | 35.0% | |
| !! | TACTTTGACTTTTCCGTCAT+TGG | + | chr6_3:3926779-3926798 | Msa0934230:CDS | 35.0% |
| !! | ACTTTGACTTTTCCGTCATT+GGG | + | chr6_3:3926780-3926799 | Msa0934230:CDS | 35.0% |
| GACTCTCCAATGAATCTAAA+GGG | - | chr6_3:3926933-3926952 | None:intergenic | 35.0% | |
| TGACTCTCCAATGAATCTAA+AGG | - | chr6_3:3926934-3926953 | None:intergenic | 35.0% | |
| AAGCTATCATGTAGAGCTTA+TGG | + | chr6_3:3927184-3927203 | Msa0934230:intron | 35.0% | |
| AATCACTTGTGGGACTATTT+GGG | - | chr6_3:3927263-3927282 | None:intergenic | 35.0% | |
| TAATCACTTGTGGGACTATT+TGG | - | chr6_3:3927264-3927283 | None:intergenic | 35.0% | |
| TTACTGGCATAATCACTTGT+GGG | - | chr6_3:3927273-3927292 | None:intergenic | 35.0% | |
| TTTACTGGCATAATCACTTG+TGG | - | chr6_3:3927274-3927293 | None:intergenic | 35.0% | |
| GGAAATATGTGATGAACTAC+TGG | + | chr6_3:3927608-3927627 | Msa0934230:intron | 35.0% | |
| TGGATATAGCACTAATGTAG+TGG | + | chr6_3:3927651-3927670 | Msa0934230:intron | 35.0% | |
| ! | AGCACTAATGTAGTGGAATT+TGG | + | chr6_3:3927658-3927677 | Msa0934230:intron | 35.0% |
| GCGCGATTTAATACTAAATG+TGG | + | chr6_3:3927704-3927723 | Msa0934230:intron | 35.0% | |
| !! | TTTCAGGTTGTTTGTACTGA+AGG | + | chr6_3:3927866-3927885 | Msa0934230:intron | 35.0% |
| TATAGATCTTCTCACTTGTC+AGG | + | chr6_3:3928093-3928112 | Msa0934230:CDS | 35.0% | |
| AGATCTGATATAACCTGTCT+TGG | + | chr6_3:3928272-3928291 | Msa0934230:CDS | 35.0% | |
| ACTTAATACTGAAACCCTAG+AGG | + | chr6_3:3928304-3928323 | Msa0934230:CDS | 35.0% | |
| GGTGGTAAGATTTCTTTCAA+AGG | + | chr6_3:3928419-3928438 | Msa0934230:intron | 35.0% | |
| AATGCAGTTTGATTCCATTC+TGG | + | chr6_3:3928659-3928678 | Msa0934230:intron | 35.0% | |
| !! | TCAAGTATCGACACTAGAAA+GGG | - | chr6_3:3928718-3928737 | None:intergenic | 35.0% |
| !! | ATCAAGTATCGACACTAGAA+AGG | - | chr6_3:3928719-3928738 | None:intergenic | 35.0% |
| TGACTCATTACCAATCATAG+GGG | + | chr6_3:3929024-3929043 | Msa0934230:intron | 35.0% | |
| ! | GCTTTTTATCCTATCCAAAC+AGG | - | chr6_3:3929051-3929070 | None:intergenic | 35.0% |
| ATTCCATTGGTGAAGGAATA+AGG | + | chr6_3:3929237-3929256 | Msa0934230:intron | 35.0% | |
| TTTCCTTATTCCTTCACCAA+TGG | - | chr6_3:3929243-3929262 | None:intergenic | 35.0% | |
| ATCAGAAATGCATTATCCGT+AGG | - | chr6_3:3929426-3929445 | None:intergenic | 35.0% | |
| ! | TTCTGATATCTGAAGCTGTA+AGG | + | chr6_3:3929439-3929458 | Msa0934230:CDS | 35.0% |
| ! | TCTGATATCTGAAGCTGTAA+GGG | + | chr6_3:3929440-3929459 | Msa0934230:CDS | 35.0% |
| AACTTGTATACCTGCTGGAA+GGG | + | chr6_3:3926040-3926059 | Msa0934230:CDS | 40.0% | |
| TTACAGAGTGACAGACTACA+AGG | + | chr6_3:3926073-3926092 | Msa0934230:CDS | 40.0% | |
| TACAGAGTGACAGACTACAA+GGG | + | chr6_3:3926074-3926093 | Msa0934230:CDS | 40.0% | |
| TCATACACTCAAGTGCAGAA+AGG | - | chr6_3:3926390-3926409 | None:intergenic | 40.0% | |
| CTAGTTGACCGTAAAACAAC+CGG | - | chr6_3:3926461-3926480 | None:intergenic | 40.0% | |
| !! | GTTGTTTTACGGTCAACTAG+CGG | + | chr6_3:3926461-3926480 | Msa0934230:intron | 40.0% |
| !!! | GTTTTGGGGTGTGTATTGTT+AGG | + | chr6_3:3926642-3926661 | Msa0934230:intron | 40.0% |
| !! | TAGGTCTAAAAGGGTATCCA+AGG | + | chr6_3:3926661-3926680 | Msa0934230:intron | 40.0% |
| TTCCGATTCTTATGAAGTGG+AGG | - | chr6_3:3926719-3926738 | None:intergenic | 40.0% | |
| !!! | AGGACCATCTTTTTTGCATG+AGG | - | chr6_3:3926753-3926772 | None:intergenic | 40.0% |
| !! | CAGCTTTGTTATCACTGCAA+CGG | - | chr6_3:3926855-3926874 | None:intergenic | 40.0% |
| GCTTAGCCCTTTAGATTCAT+TGG | + | chr6_3:3926924-3926943 | Msa0934230:CDS | 40.0% | |
| TTCATTGGAGAGTCACATGA+AGG | + | chr6_3:3926939-3926958 | Msa0934230:CDS | 40.0% | |
| AAGATAAGCACCAGCTACAA+TGG | - | chr6_3:3926968-3926987 | None:intergenic | 40.0% | |
| !! | TTTGTGATGAAGAGAGTGTC+CGG | + | chr6_3:3926986-3927005 | Msa0934230:CDS | 40.0% |
| TAATAGGCCAAGAACATACC+CGG | - | chr6_3:3927008-3927027 | None:intergenic | 40.0% | |
| AGTGGAATTTGGACAAACTG+CGG | + | chr6_3:3927669-3927688 | Msa0934230:intron | 40.0% | |
| AGTCAGAGAACTGATTGCTA+TGG | + | chr6_3:3927898-3927917 | Msa0934230:intron | 40.0% | |
| GTCAGAGAACTGATTGCTAT+GGG | + | chr6_3:3927899-3927918 | Msa0934230:intron | 40.0% | |
| TCGTTTGATCATGAGGAAGA+TGG | + | chr6_3:3927926-3927945 | Msa0934230:intron | 40.0% | |
| TGCTAACTGAAACATGTTGC+TGG | + | chr6_3:3928238-3928257 | Msa0934230:intron | 40.0% | |
| TAATACTGAAACCCTAGAGG+TGG | + | chr6_3:3928307-3928326 | Msa0934230:intron | 40.0% | |
| AATACTGAAACCCTAGAGGT+GGG | + | chr6_3:3928308-3928327 | Msa0934230:intron | 40.0% | |
| !! | AATTGCTTTTCCCACCTCTA+GGG | - | chr6_3:3928321-3928340 | None:intergenic | 40.0% |
| !! | TAATTGCTTTTCCCACCTCT+AGG | - | chr6_3:3928322-3928341 | None:intergenic | 40.0% |
| TCCTAAAACTACGAATCCGT+TGG | + | chr6_3:3928479-3928498 | Msa0934230:CDS | 40.0% | |
| !! | ACCAACGGATTCGTAGTTTT+AGG | - | chr6_3:3928483-3928502 | None:intergenic | 40.0% |
| !! | AGTGTCGATACTTGATAGCA+TGG | + | chr6_3:3928723-3928742 | Msa0934230:intron | 40.0% |
| TTACTATAACAGGTTGCCAC+CGG | + | chr6_3:3928935-3928954 | Msa0934230:intron | 40.0% | |
| TCAAGCTGTGATTTCCAACA+TGG | + | chr6_3:3928985-3929004 | Msa0934230:intron | 40.0% | |
| GATTTCCAACATGGAGTAAG+TGG | + | chr6_3:3928994-3929013 | Msa0934230:intron | 40.0% | |
| ACAATCCACTTACTCCATGT+TGG | - | chr6_3:3929002-3929021 | None:intergenic | 40.0% | |
| AGATTGTGTGGGAGAGTTTA+TGG | - | chr6_3:3929206-3929225 | None:intergenic | 40.0% | |
| AAGCACTTGTGAGATTGTGT+GGG | - | chr6_3:3929217-3929236 | None:intergenic | 40.0% | |
| TAAGCACTTGTGAGATTGTG+TGG | - | chr6_3:3929218-3929237 | None:intergenic | 40.0% | |
| CTCACAAGTGCTTATTCCAT+TGG | + | chr6_3:3929224-3929243 | Msa0934230:intron | 40.0% | |
| AGTGCTTATTCCATTGGTGA+AGG | + | chr6_3:3929230-3929249 | Msa0934230:intron | 40.0% | |
| AAATGCATTATCCGTAGGCT+CGG | - | chr6_3:3929421-3929440 | None:intergenic | 40.0% | |
| ! | CTGATATCTGAAGCTGTAAG+GGG | + | chr6_3:3929441-3929460 | Msa0934230:CDS | 40.0% |
| ATGGCAACTTGTATACCTGC+TGG | + | chr6_3:3926035-3926054 | Msa0934230:CDS | 45.0% | |
| CAACTTGTATACCTGCTGGA+AGG | + | chr6_3:3926039-3926058 | Msa0934230:CDS | 45.0% | |
| ACTTGTATACCTGCTGGAAG+GGG | + | chr6_3:3926041-3926060 | Msa0934230:CDS | 45.0% | |
| GAAGTACAATCAGCTCTTGC+CGG | + | chr6_3:3926439-3926458 | Msa0934230:intron | 45.0% | |
| !! | AGCTCTTGCCGGTTGTTTTA+CGG | + | chr6_3:3926450-3926469 | Msa0934230:intron | 45.0% |
| TTTGTGCATCTGCAGTACCT+TGG | - | chr6_3:3926681-3926700 | None:intergenic | 45.0% | |
| GGCCTCCACTTCATAAGAAT+CGG | + | chr6_3:3926714-3926733 | Msa0934230:CDS | 45.0% | |
| AGCAATTCCACTCCCAATGA+CGG | - | chr6_3:3926795-3926814 | None:intergenic | 45.0% | |
| GCGCTCGAAGTTGCAAAATA+TGG | + | chr6_3:3926827-3926846 | Msa0934230:CDS | 45.0% | |
| ATGAAGGACACCATTGTAGC+TGG | + | chr6_3:3926955-3926974 | Msa0934230:CDS | 45.0% | |
| !! | TTGTGATGAAGAGAGTGTCC+GGG | + | chr6_3:3926987-3927006 | Msa0934230:CDS | 45.0% |
| GTGATCTGCAATTGGCAACA+CGG | + | chr6_3:3927793-3927812 | Msa0934230:intron | 45.0% | |
| ! | ATCAGTTCTCTGACTCGATC+AGG | - | chr6_3:3927893-3927912 | None:intergenic | 45.0% |
| ! | ATGGTAACTTGCATCTAGCG+AGG | + | chr6_3:3927945-3927964 | Msa0934230:CDS | 45.0% |
| ! | TGGTAACTTGCATCTAGCGA+GGG | + | chr6_3:3927946-3927965 | Msa0934230:CDS | 45.0% |
| GTTCATGCTGCTGATATGAC+AGG | + | chr6_3:3927995-3928014 | Msa0934230:CDS | 45.0% | |
| !! | AAACATGTTGCTGGTGTTGC+AGG | + | chr6_3:3928247-3928266 | Msa0934230:intron | 45.0% |
| AAGTGTGTCAACACCAAGAC+AGG | - | chr6_3:3928288-3928307 | None:intergenic | 45.0% | |
| TGGAAATCACAGCTTGAGCT+CGG | - | chr6_3:3928982-3929001 | None:intergenic | 45.0% | |
| CCTTCATCAGCTAATGCAGT+CGG | - | chr6_3:3929381-3929400 | None:intergenic | 45.0% | |
| CGACTGCATTAGCTGATGAA+GGG | + | chr6_3:3929379-3929398 | Msa0934230:CDS | 45.0% | |
| ! | GACTTTTCCGTCATTGGGAG+TGG | + | chr6_3:3926785-3926804 | Msa0934230:CDS | 50.0% |
| GTCATTGGGAGTGGAATTGC+TGG | + | chr6_3:3926794-3926813 | Msa0934230:CDS | 50.0% | |
| CAACTTCGAGCGCATATCGA+AGG | - | chr6_3:3926820-3926839 | None:intergenic | 50.0% | |
| ! | AGAGTGTCCGGGTATGTTCT+TGG | + | chr6_3:3926998-3927017 | Msa0934230:intron | 50.0% |
| TGTCGTGAGCTGCAGTAGAA+TGG | + | chr6_3:3927367-3927386 | Msa0934230:intron | 50.0% | |
| ! | TAACTTGCATCTAGCGAGGG+AGG | + | chr6_3:3927949-3927968 | Msa0934230:CDS | 50.0% |
| AACTTGCATCTAGCGAGGGA+GGG | + | chr6_3:3927950-3927969 | Msa0934230:CDS | 50.0% | |
| GATTGAGCGCGCTCTATTGA+AGG | + | chr6_3:3928024-3928043 | Msa0934230:CDS | 50.0% | |
| AAGGCGACTTTACTAGCGTC+AGG | + | chr6_3:3928438-3928457 | Msa0934230:CDS | 50.0% | |
| AGGCGACTTTACTAGCGTCA+GGG | + | chr6_3:3928439-3928458 | Msa0934230:CDS | 50.0% | |
| TGCCATTGCAATCCCATCTC+CGG | - | chr6_3:3928957-3928976 | None:intergenic | 50.0% | |
| CATCAGCTAATGCAGTCGGA+TGG | - | chr6_3:3929377-3929396 | None:intergenic | 50.0% | |
| CCGACTGCATTAGCTGATGA+AGG | + | chr6_3:3929378-3929397 | Msa0934230:CDS | 50.0% | |
| !! | GTAGGCTCGGTTGGTTTAAC+GGG | - | chr6_3:3929408-3929427 | None:intergenic | 50.0% |
| !! | CGTAGGCTCGGTTGGTTTAA+CGG | - | chr6_3:3929409-3929428 | None:intergenic | 50.0% |
| CGTTAAACCAACCGAGCCTA+CGG | + | chr6_3:3929407-3929426 | Msa0934230:CDS | 50.0% | |
| ! | TCTGAAGCTGTAAGGGGTGA+TGG | + | chr6_3:3929447-3929466 | Msa0934230:CDS | 50.0% |
| GGGCGCATCGTTTGATCATG+AGG | + | chr6_3:3927919-3927938 | Msa0934230:intron | 55.0% | |
| GGCGACTTTACTAGCGTCAG+GGG | + | chr6_3:3928440-3928459 | Msa0934230:CDS | 55.0% | |
| GCGACTTTACTAGCGTCAGG+GGG | + | chr6_3:3928441-3928460 | Msa0934230:CDS | 55.0% | |
| TAACAGGTTGCCACCGGAGA+TGG | + | chr6_3:3928941-3928960 | Msa0934230:intron | 55.0% | |
| AACAGGTTGCCACCGGAGAT+GGG | + | chr6_3:3928942-3928961 | Msa0934230:intron | 55.0% | |
| CATTGCAATCCCATCTCCGG+TGG | - | chr6_3:3928954-3928973 | None:intergenic | 55.0% | |
| CACCGGAGATGGGATTGCAA+TGG | + | chr6_3:3928952-3928971 | Msa0934230:intron | 55.0% | |
| CCAAACAGGGCCCCTATGAT+TGG | - | chr6_3:3929037-3929056 | None:intergenic | 55.0% | |
| CCAATCATAGGGGCCCTGTT+TGG | + | chr6_3:3929034-3929053 | Msa0934230:intron | 55.0% | |
| CATAGGGGCCCTGTTTGGAT+AGG | + | chr6_3:3929039-3929058 | Msa0934230:intron | 55.0% | |
| ! | GCATTATCCGTAGGCTCGGT+TGG | - | chr6_3:3929417-3929436 | None:intergenic | 55.0% |
| ! | GAAGCTGTAAGGGGTGATGG+TGG | + | chr6_3:3929450-3929469 | Msa0934230:CDS | 55.0% |
| TGCAATGTGCCCCTTCCAGC+AGG | - | chr6_3:3926053-3926072 | None:intergenic | 60.0% | |
| TTGCATCTAGCGAGGGAGGG+AGG | + | chr6_3:3927953-3927972 | Msa0934230:CDS | 60.0% | |
| ! | TTACTAGCGTCAGGGGGTGC+TGG | + | chr6_3:3928447-3928466 | Msa0934230:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 3926025 | 3929497 | 3926025 | ID=Msa0934230;Name=Msa0934230 |
| chr6_3 | mRNA | 3926025 | 3929497 | 3926025 | ID=Msa0934230-mRNA-1;Parent=Msa0934230;Name=Msa0934230-mRNA-1;_AED=0.12;_eAED=0.12;_QI=10|0|0|1|0.5|0.28|7|0|292 |
| chr6_3 | exon | 3926025 | 3926132 | 3926025 | ID=Msa0934230-mRNA-1:exon:1175;Parent=Msa0934230-mRNA-1 |
| chr6_3 | exon | 3926664 | 3926912 | 3926664 | ID=Msa0934230-mRNA-1:exon:1176;Parent=Msa0934230-mRNA-1 |
| chr6_3 | exon | 3926918 | 3927008 | 3926918 | ID=Msa0934230-mRNA-1:exon:1177;Parent=Msa0934230-mRNA-1 |
| chr6_3 | exon | 3927941 | 3928114 | 3927941 | ID=Msa0934230-mRNA-1:exon:1178;Parent=Msa0934230-mRNA-1 |
| chr6_3 | exon | 3928269 | 3928325 | 3928269 | ID=Msa0934230-mRNA-1:exon:1179;Parent=Msa0934230-mRNA-1 |
| chr6_3 | exon | 3928420 | 3928500 | 3928420 | ID=Msa0934230-mRNA-1:exon:1180;Parent=Msa0934230-mRNA-1 |
| chr6_3 | exon | 3929372 | 3929497 | 3929372 | ID=Msa0934230-mRNA-1:exon:1181;Parent=Msa0934230-mRNA-1 |
| chr6_3 | five_prime_UTR | 3926025 | 3926034 | 3926025 | ID=Msa0934230-mRNA-1:five_prime_utr;Parent=Msa0934230-mRNA-1 |
| chr6_3 | CDS | 3926035 | 3926132 | 3926035 | ID=Msa0934230-mRNA-1:cds;Parent=Msa0934230-mRNA-1 |
| chr6_3 | CDS | 3926664 | 3926912 | 3926664 | ID=Msa0934230-mRNA-1:cds;Parent=Msa0934230-mRNA-1 |
| chr6_3 | CDS | 3926918 | 3927008 | 3926918 | ID=Msa0934230-mRNA-1:cds;Parent=Msa0934230-mRNA-1 |
| chr6_3 | CDS | 3927941 | 3928114 | 3927941 | ID=Msa0934230-mRNA-1:cds;Parent=Msa0934230-mRNA-1 |
| chr6_3 | CDS | 3928269 | 3928325 | 3928269 | ID=Msa0934230-mRNA-1:cds;Parent=Msa0934230-mRNA-1 |
| chr6_3 | CDS | 3928420 | 3928500 | 3928420 | ID=Msa0934230-mRNA-1:cds;Parent=Msa0934230-mRNA-1 |
| chr6_3 | CDS | 3929372 | 3929497 | 3929372 | ID=Msa0934230-mRNA-1:cds;Parent=Msa0934230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
