AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0363460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0363460 MtrunA17_Chr3g0102091 95.165 393 19 0 1 393 1 393 0.0 759
Msa0363460 MtrunA17_Chr4g0055041 51.744 344 161 3 45 384 33 375 1.52e-119 352
Msa0363460 MtrunA17_Chr2g0283381 49.398 332 164 2 40 370 35 363 3.27e-111 330
Msa0363460 MtrunA17_Chr7g0249781 49.848 329 160 2 41 369 23 346 4.68e-100 301
Msa0363460 MtrunA17_Chr6g0483671 77.457 173 32 1 218 390 4 169 6.99e-91 271
Msa0363460 MtrunA17_Chr3g0132551 35.202 321 198 4 55 365 24 344 6.05e-59 196
Msa0363460 MtrunA17_Chr5g0426921 33.728 338 207 5 59 386 32 362 1.13e-53 182
Msa0363460 MtrunA17_Chr3g0132561 30.994 342 191 4 34 365 3 309 1.37e-49 170
Msa0363460 MtrunA17_Chr8g0346091 32.682 358 219 5 23 371 24 368 5.01e-49 169
Msa0363460 MtrunA17_Chr2g0296491 32.320 362 219 9 3 357 31 373 1.08e-39 145
Msa0363460 MtrunA17_Chr2g0296481 33.225 307 184 8 68 367 72 364 4.33e-34 130
Msa0363460 MtrunA17_Chr2g0313931 45.669 127 61 3 45 170 30 149 1.56e-27 107
Msa0363460 MtrunA17_Chr2g0313921 43.284 67 36 1 213 277 2 68 2.13e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0363460 AT4G18220.1 56.234 393 158 4 1 386 1 386 5.86e-150 430
Msa0363460 AT4G18210.1 56.443 388 155 4 1 381 1 381 8.31e-146 419
Msa0363460 AT4G18205.1 49.870 385 173 5 5 389 13 377 5.94e-119 350
Msa0363460 AT4G18195.1 51.194 377 179 3 16 392 16 387 2.41e-114 339
Msa0363460 AT4G18197.1 47.949 390 190 4 9 392 1 383 2.94e-112 334
Msa0363460 AT4G18190.1 51.771 367 163 4 12 371 2 361 2.42e-109 326
Msa0363460 AT1G44750.1 48.308 325 162 1 45 369 42 360 2.01e-95 290
Msa0363460 AT1G44750.6 48.308 325 162 1 45 369 30 348 3.28e-95 289
Msa0363460 AT1G44750.2 48.308 325 162 1 45 369 30 348 3.28e-95 289
Msa0363460 AT1G44750.7 53.036 247 116 0 123 369 38 284 1.92e-84 259
Msa0363460 AT1G44750.5 53.036 247 116 0 123 369 38 284 1.92e-84 259
Msa0363460 AT1G44750.4 53.036 247 116 0 123 369 38 284 1.92e-84 259
Msa0363460 AT1G44750.8 53.036 247 116 0 123 369 38 284 1.92e-84 259
Msa0363460 AT1G44750.3 53.036 247 116 0 123 369 38 284 1.92e-84 259
Msa0363460 AT4G08700.1 41.351 370 195 4 1 369 1 349 5.21e-84 260
Msa0363460 AT5G41160.1 40.270 370 202 5 1 369 1 352 1.56e-78 246
Msa0363460 AT1G28220.1 36.562 320 188 6 59 371 16 327 9.27e-65 211
Msa0363460 AT2G33750.2 37.423 326 191 3 59 379 18 335 1.22e-63 207
Msa0363460 AT2G33750.1 36.202 337 191 4 59 379 18 346 2.26e-60 199
Msa0363460 AT1G28230.1 35.692 325 203 3 59 377 16 340 1.75e-59 197
Msa0363460 AT1G19770.1 31.420 331 205 4 59 368 59 388 4.06e-45 160
Msa0363460 AT1G57990.1 31.746 378 222 10 12 363 1 368 2.40e-42 153
Msa0363460 AT1G57980.1 33.071 381 217 10 12 363 1 372 6.55e-42 152
Msa0363460 AT1G57943.1 31.099 373 224 8 15 363 13 376 1.87e-39 145
Msa0363460 AT1G57943.2 30.831 373 224 8 15 363 13 375 2.14e-39 145
Msa0363460 AT1G47603.1 31.008 387 237 10 15 379 13 391 2.67e-38 142
Msa0363460 AT2G24220.2 31.761 318 200 4 45 358 54 358 9.44e-36 135
Msa0363460 AT2G24220.1 31.761 318 200 4 45 358 36 340 1.16e-35 134
Msa0363460 AT1G09860.1 30.704 355 218 8 42 375 25 372 8.04e-34 130
Msa0363460 AT1G75470.1 28.645 391 251 9 1 371 1 383 1.09e-32 127
Msa0363460 AT1G30840.2 30.619 307 203 3 59 363 38 336 1.38e-25 107
Msa0363460 AT1G30840.1 30.619 307 203 3 59 363 38 336 1.38e-25 107

Find 98 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTTGTATCAACAATATT+TGG 0.161384 3_1:-55927123 Msa0363460:CDS
TTTCATTCACTTTCAAAATA+TGG 0.166995 3_1:-55929516 Msa0363460:exon
CTCCAATGAGAATGTTTCTT+TGG 0.196693 3_1:+55928153 None:intergenic
TTCTATGGTACTAGCTGTTT+GGG 0.219148 3_1:-55927156 Msa0363460:CDS
ATAATGCATTGAAACCTAAT+TGG 0.241997 3_1:+55927726 None:intergenic
TAATTGATCCATTCGTTATT+TGG 0.243206 3_1:+55928113 None:intergenic
CTTATTTGCTCATCCCAATT+AGG 0.250351 3_1:-55927740 Msa0363460:CDS
AAATAATATGGTAGTAGAAT+TGG 0.273685 3_1:+55927935 None:intergenic
ATTTGCTACTTATATTCATT+AGG 0.276797 3_1:-55927794 Msa0363460:CDS
AGCGGGAGCTTCAACCTTAA+TGG 0.277606 3_1:+55926644 None:intergenic
GGAAGATTATACTATGAAAA+AGG 0.278195 3_1:-55928004 Msa0363460:CDS
TTTCTATGGTACTAGCTGTT+TGG 0.287753 3_1:-55927157 Msa0363460:CDS
AGACAAAATGCATGGGATTA+AGG 0.299496 3_1:-55927183 Msa0363460:CDS
TTTGCTACTTATATTCATTA+GGG 0.310509 3_1:-55927793 Msa0363460:CDS
TAGAGTTGTCGATTCCATTA+AGG 0.313410 3_1:-55926658 Msa0363460:three_prime_UTR
AGAATGTTTCTTTGGCTTCA+TGG 0.313976 3_1:+55928161 None:intergenic
TTCATTCACTTTCAAAATAT+GGG 0.322109 3_1:-55929515 Msa0363460:exon
TGGGATTAAGGCCATTTCTA+TGG 0.331205 3_1:-55927171 Msa0363460:CDS
AGCAAATTAATGCATTAATT+AGG 0.331530 3_1:+55927810 None:intergenic
GTGAGGAGTGTTTCTTGTTT+CGG 0.337873 3_1:+55927082 None:intergenic
AACAATGATATTATTATTTG+TGG 0.348869 3_1:+55927886 None:intergenic
GTCTTTAGTATTGGTTGTGT+TGG 0.355728 3_1:-55927296 Msa0363460:CDS
ATTCAATATGTAAGAAGATT+AGG 0.359410 3_1:-55926968 Msa0363460:three_prime_UTR
GAAATGGAAGATTATGAGTT+GGG 0.360853 3_1:-55927368 Msa0363460:CDS
TGAACCATATATGTTTGGTT+AGG 0.371443 3_1:-55926911 Msa0363460:three_prime_UTR
GAAGAGGGTGATTGTCGATC+TGG 0.375658 3_1:-55927022 Msa0363460:three_prime_UTR
AATCTTCTTACATATTGAAT+TGG 0.378814 3_1:+55926971 None:intergenic
ATACCCTAACCAAACATATA+TGG 0.379817 3_1:+55926907 None:intergenic
AATAATATGGTAGTAGAATT+GGG 0.381033 3_1:+55927936 None:intergenic
TCTTGAAAGCTAGTTGTGTA+AGG 0.383818 3_1:+55927513 None:intergenic
ACAGCTAATATAGGAACAAT+AGG 0.391827 3_1:+55927218 None:intergenic
GGAAACATTTGTGGAATTTG+AGG 0.396482 3_1:+55927604 None:intergenic
ACTAAAGACTTGCCATGTTA+TGG 0.397777 3_1:+55927310 None:intergenic
TGCACTTTAGTTGCATCTGC+AGG 0.400863 3_1:-55927554 Msa0363460:CDS
GTTGGTTAATATCATTGATT+CGG 0.415199 3_1:-55926946 Msa0363460:three_prime_UTR
TGAATTGGTTCTACTTGAAT+CGG 0.420336 3_1:+55926986 None:intergenic
GATCCATTCGTTATTTGGTC+TGG 0.422102 3_1:+55928118 None:intergenic
AAGAAAACCACAGCTAATAT+AGG 0.424462 3_1:+55927209 None:intergenic
TCCAAGAAAATGTATTGGAT+TGG 0.426703 3_1:-55927584 Msa0363460:CDS
TTAGTTGCATCTGCAGGGTA+TGG 0.427771 3_1:-55927548 Msa0363460:CDS
TATATGTTTGGTTAGGGTAT+GGG 0.430559 3_1:-55926904 Msa0363460:three_prime_UTR
ATATATGTTTGGTTAGGGTA+TGG 0.430775 3_1:-55926905 Msa0363460:three_prime_UTR
TATGCAGCACTTGTCTTAGC+AGG 0.431417 3_1:-55928049 Msa0363460:CDS
GGGAGGAAGAAATTGTTAGA+AGG 0.435023 3_1:+55927648 None:intergenic
GAACCATATATGTTTGGTTA+GGG 0.437359 3_1:-55926910 Msa0363460:three_prime_UTR
ATGTTTCCAAGAAAATGTAT+TGG 0.439252 3_1:-55927589 Msa0363460:CDS
ATATGTTTGGTTAGGGTATG+GGG 0.443296 3_1:-55926903 Msa0363460:three_prime_UTR
ATAAGTGTAAAAGTAGAGAC+AGG 0.447522 3_1:+55927758 None:intergenic
TAATGCATTGAAACCTAATT+GGG 0.449877 3_1:+55927727 None:intergenic
GAATGGTATAAAGAAAGAAA+TGG 0.452288 3_1:-55927384 Msa0363460:CDS
ACATGGCAAGTCTTTAGTAT+TGG 0.454459 3_1:-55927305 Msa0363460:CDS
CATGATAATATATACACAAT+TGG 0.457768 3_1:-55927453 Msa0363460:CDS
AGCCAAAGAAACATTCTCAT+TGG 0.458851 3_1:-55928155 Msa0363460:CDS
TGTTGTGAACCATATATGTT+TGG 0.459214 3_1:-55926916 Msa0363460:three_prime_UTR
ATAGATAATGTTGAGAATGC+AGG 0.465316 3_1:-55926693 Msa0363460:three_prime_UTR
AACAGCTAGTACCATAGAAA+TGG 0.466085 3_1:+55927160 None:intergenic
GCAACCGTTGTTCAACTAGC+TGG 0.475269 3_1:-55927962 Msa0363460:CDS
CTAAAAGTGTTGCAGCGGAT+TGG 0.480545 3_1:+55928026 None:intergenic
TTCTTTCAAGACAAAATGCA+TGG 0.482674 3_1:-55927191 Msa0363460:CDS
TGGAATTTGAGGACTCACTT+TGG 0.488137 3_1:+55927615 None:intergenic
GCTACTTGTATTACTCTAGT+AGG 0.496365 3_1:-55927428 Msa0363460:CDS
TTAATGGAATCGACAACTCT+AGG 0.502719 3_1:+55926660 None:intergenic
ATGTATGTAGATGATTGATT+TGG 0.505941 3_1:+55927860 None:intergenic
AGAAATGGAAGATTATGAGT+TGG 0.508458 3_1:-55927369 Msa0363460:CDS
TATTGTTCCTATATTAGCTG+TGG 0.512942 3_1:-55927216 Msa0363460:CDS
CTTTCAAGAAGGTTGTGAAA+AGG 0.516513 3_1:-55927499 Msa0363460:CDS
TGGCTATGAAAGTGAGATCA+AGG 0.518558 3_1:+55927330 None:intergenic
CTTGAGTGAATTGAGGAAGT+AGG 0.525823 3_1:+55927700 None:intergenic
GAAAAGAATATACTATATCA+AGG 0.526990 3_1:-55928080 Msa0363460:CDS
ACTAAAGAGTTGATTATGAA+AGG 0.535009 3_1:+55927671 None:intergenic
CTTGAAAGCTAGTTGTGTAA+GGG 0.540792 3_1:+55927514 None:intergenic
CATTCTTCAACTTTAGAAGA+GGG 0.542067 3_1:-55927050 Msa0363460:CDS
AGGACTCACTTTGGAACACA+AGG 0.547523 3_1:+55927624 None:intergenic
TAGAAGAGGGTGACTGAAGA+GGG 0.548566 3_1:-55927037 Msa0363460:exon
AAGAGGGTGATTGTCGATCT+GGG 0.548628 3_1:-55927021 Msa0363460:three_prime_UTR
AAGCTAGTTGTGTAAGGGAA+AGG 0.557780 3_1:+55927519 None:intergenic
TACACAACTAGCTTTCAAGA+AGG 0.562208 3_1:-55927510 Msa0363460:CDS
AATATGTAAGAAGATTAGGT+TGG 0.566299 3_1:-55926964 Msa0363460:three_prime_UTR
AGTGAATGAAATAACTTGAG+AGG 0.572386 3_1:+55929528 None:intergenic
TCTTTCAAGACAAAATGCAT+GGG 0.582272 3_1:-55927190 Msa0363460:CDS
TCTATGGTACTAGCTGTTTG+GGG 0.589297 3_1:-55927155 Msa0363460:CDS
TTTGCAAGTGGAGAGTGGAA+TGG 0.589737 3_1:-55927401 Msa0363460:CDS
GCACTTTAGTTGCATCTGCA+GGG 0.593181 3_1:-55927553 Msa0363460:CDS
ACATTCTTCAACTTTAGAAG+AGG 0.593996 3_1:-55927051 Msa0363460:CDS
AGGAGGAAAGAGTAAATGGA+TGG 0.594332 3_1:-55927984 Msa0363460:CDS
TTAGAAGAGGGTGACTGAAG+AGG 0.597747 3_1:-55927038 Msa0363460:exon
TCTTCCTAAAAGTGTTGCAG+CGG 0.607054 3_1:+55928021 None:intergenic
CTTAATATATGATAATGTGA+AGG 0.610082 3_1:-55926873 Msa0363460:three_prime_UTR
AAATGGAAGATTATGAGTTG+GGG 0.615707 3_1:-55927367 Msa0363460:CDS
GTGTGAACTTGAGTGAATTG+AGG 0.627114 3_1:+55927693 None:intergenic
TTTCCAGACCAAATAACGAA+TGG 0.633752 3_1:-55928121 Msa0363460:CDS
CTCACTTTGGAACACAAGGA+GGG 0.640434 3_1:+55927628 None:intergenic
TAAGTGTAAAAGTAGAGACA+GGG 0.654814 3_1:+55927759 None:intergenic
TCACTTTCATAGCCATAACA+TGG 0.656519 3_1:-55927322 Msa0363460:CDS
ACTCACTTTGGAACACAAGG+AGG 0.662657 3_1:+55927627 None:intergenic
GAAGAATGTTTGCTAATGTG+AGG 0.676409 3_1:+55927065 None:intergenic
ACTTTGGAACACAAGGAGGG+AGG 0.681387 3_1:+55927631 None:intergenic
GAAACCAGCTAGTTGAACAA+CGG 0.701516 3_1:+55927958 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAACTTTCAAAAA+CGG - chr3_1:55926866-55926885 Msa0363460:three_prime_UTR 10.0%
!!! TTTTTTTTTTTATGTAAAAG+TGG - chr3_1:55927848-55927867 Msa0363460:CDS 10.0%
!! CTAATAATATCTTTCAAAAA+CGG - chr3_1:55926831-55926850 Msa0363460:three_prime_UTR 15.0%
!!! TCTTCTTAATTATTTTAGTA+AGG - chr3_1:55926981-55927000 Msa0363460:three_prime_UTR 15.0%
!! TTTGAACTAATATTAACTAA+AGG - chr3_1:55927058-55927077 Msa0363460:CDS 15.0%
!!! ATTTTTTTTTTTTTTTACCG+TGG - chr3_1:55927423-55927442 Msa0363460:CDS 15.0%
!! ACATTTACATATCTATATAT+GGG + chr3_1:55927583-55927602 None:intergenic 15.0%
!! AACATTTACATATCTATATA+TGG + chr3_1:55927584-55927603 None:intergenic 15.0%
!! TACTTCAAAATAATAGAAAA+TGG - chr3_1:55927643-55927662 Msa0363460:CDS 15.0%
!! ATTTATACTACGATAAATAT+TGG - chr3_1:55927811-55927830 Msa0363460:CDS 15.0%
!! GTAATTAAAAAAAAATGCAA+AGG - chr3_1:55927900-55927919 Msa0363460:CDS 15.0%
!! ATATCATATATCCTTAATAT+TGG + chr3_1:55927978-55927997 None:intergenic 15.0%
!!! ATAGTATATTCTTTTCTTAT+TGG + chr3_1:55928116-55928135 None:intergenic 15.0%
!! GATAAGATGAAAAAATAATA+TGG + chr3_1:55928280-55928299 None:intergenic 15.0%
!! AACAATGATATTATTATTTG+TGG + chr3_1:55928317-55928336 None:intergenic 15.0%
!! ATATTTGTATCAACAATATT+TGG - chr3_1:55929077-55929096 Msa0363460:intron 15.0%
!! TTTCATTCACTTTCAAAATA+TGG - chr3_1:55926684-55926703 Msa0363460:three_prime_UTR 20.0%
!! TTCATTCACTTTCAAAATAT+GGG - chr3_1:55926685-55926704 Msa0363460:three_prime_UTR 20.0%
!!! ATTTTAGTAAGGTATATAGT+CGG - chr3_1:55926992-55927011 Msa0363460:three_prime_UTR 20.0%
!!! AAACAATTTTTTTTACAGAG+AGG + chr3_1:55927202-55927221 None:intergenic 20.0%
!!! CCTTAAATTTTGAAATTTCA+TGG + chr3_1:55927273-55927292 None:intergenic 20.0%
!! CCATGAAATTTCAAAATTTA+AGG - chr3_1:55927270-55927289 Msa0363460:CDS 20.0%
!! CAAAATTTACTCAAATTACA+GGG + chr3_1:55927305-55927324 None:intergenic 20.0%
!! TTACTGACAACTAAAAATAA+AGG + chr3_1:55927551-55927570 None:intergenic 20.0%
!! CATTTACATATCTATATATG+GGG + chr3_1:55927582-55927601 None:intergenic 20.0%
!! GAAAAGAATATACTATATCA+AGG - chr3_1:55928120-55928139 Msa0363460:CDS 20.0%
!! AATAATATGGTAGTAGAATT+GGG + chr3_1:55928267-55928286 None:intergenic 20.0%
!! AAATAATATGGTAGTAGAAT+TGG + chr3_1:55928268-55928287 None:intergenic 20.0%
!!! ATTATTTGTGGTATGTTTTT+TGG + chr3_1:55928305-55928324 None:intergenic 20.0%
!! AGCAAATTAATGCATTAATT+AGG + chr3_1:55928393-55928412 None:intergenic 20.0%
!!! ATTTGCTACTTATATTCATT+AGG - chr3_1:55928406-55928425 Msa0363460:intron 20.0%
!!! TTTGCTACTTATATTCATTA+GGG - chr3_1:55928407-55928426 Msa0363460:intron 20.0%
!! CATGATAATATATACACAAT+TGG - chr3_1:55928747-55928766 Msa0363460:intron 20.0%
!! AATCTTCTTACATATTGAAT+TGG + chr3_1:55929232-55929251 None:intergenic 20.0%
!! ATTCAATATGTAAGAAGATT+AGG - chr3_1:55929232-55929251 Msa0363460:intron 20.0%
!!! CTTAATATATGATAATGTGA+AGG - chr3_1:55929327-55929346 Msa0363460:intron 20.0%
! AGATCTTCAACTTCAAAAAA+TGG - chr3_1:55926717-55926736 Msa0363460:three_prime_UTR 25.0%
! GATCTTCAACTTCAAAAAAT+GGG - chr3_1:55926718-55926737 Msa0363460:three_prime_UTR 25.0%
! CAAAGAATCTTCAAATTACA+GGG + chr3_1:55927234-55927253 None:intergenic 25.0%
! TCAAAGAATCTTCAAATTAC+AGG + chr3_1:55927235-55927254 None:intergenic 25.0%
! CCAAAATTTACTCAAATTAC+AGG + chr3_1:55927306-55927325 None:intergenic 25.0%
!! CCTGTAATTTGAGTAAATTT+TGG - chr3_1:55927303-55927322 Msa0363460:CDS 25.0%
! ATTGTACAAAATCGATGAAA+TGG + chr3_1:55927340-55927359 None:intergenic 25.0%
! TGTACAATCAAAATTCATGA+AGG - chr3_1:55927352-55927371 Msa0363460:CDS 25.0%
! GATGAACGATATTAGAATTA+AGG + chr3_1:55927495-55927514 None:intergenic 25.0%
! TATACTACGATAAATATTGG+TGG - chr3_1:55927814-55927833 Msa0363460:CDS 25.0%
! ATACTACGATAAATATTGGT+GGG - chr3_1:55927815-55927834 Msa0363460:CDS 25.0%
!! ACCAATTTTGTCCAATATTA+AGG - chr3_1:55927964-55927983 Msa0363460:CDS 25.0%
! TCCTTAATATTGGACAAAAT+TGG + chr3_1:55927968-55927987 None:intergenic 25.0%
! TAATTGATCCATTCGTTATT+TGG + chr3_1:55928090-55928109 None:intergenic 25.0%
! GGAAGATTATACTATGAAAA+AGG - chr3_1:55928196-55928215 Msa0363460:intron 25.0%
! AGATTATACTATGAAAAAGG+AGG - chr3_1:55928199-55928218 Msa0363460:intron 25.0%
! ATGTATGTAGATGATTGATT+TGG + chr3_1:55928343-55928362 None:intergenic 25.0%
! TAATGCATTGAAACCTAATT+GGG + chr3_1:55928476-55928495 None:intergenic 25.0%
! ATAATGCATTGAAACCTAAT+TGG + chr3_1:55928477-55928496 None:intergenic 25.0%
!! ACTAAAGAGTTGATTATGAA+AGG + chr3_1:55928532-55928551 None:intergenic 25.0%
! ATGTTTCCAAGAAAATGTAT+TGG - chr3_1:55928611-55928630 Msa0363460:intron 25.0%
!!! GCAAAATTTTAAAAGTGTGA+TGG - chr3_1:55928723-55928742 Msa0363460:intron 25.0%
! GAATGGTATAAAGAAAGAAA+TGG - chr3_1:55928816-55928835 Msa0363460:intron 25.0%
!! TCTAATGCTATAAGTGTTTT+AGG - chr3_1:55928955-55928974 Msa0363460:intron 25.0%
! AATATGTAAGAAGATTAGGT+TGG - chr3_1:55929236-55929255 Msa0363460:intron 25.0%
!! GTTGGTTAATATCATTGATT+CGG - chr3_1:55929254-55929273 Msa0363460:intron 25.0%
AGTGAATGAAATAACTTGAG+AGG + chr3_1:55926675-55926694 None:intergenic 30.0%
GGAAAAAATATACGATGAAC+TGG - chr3_1:55926887-55926906 Msa0363460:three_prime_UTR 30.0%
! TGTTTTCTCTGGATTCTATT+GGG + chr3_1:55926926-55926945 None:intergenic 30.0%
! TTGTTTTCTCTGGATTCTAT+TGG + chr3_1:55926927-55926946 None:intergenic 30.0%
!! TTCTTACTAGTTGTTTTCTC+TGG + chr3_1:55926937-55926956 None:intergenic 30.0%
ACTAGTAAGAAACACAATCA+TGG - chr3_1:55926946-55926965 Msa0363460:three_prime_UTR 30.0%
! TTTTCTTGTACTATTAGCGA+TGG - chr3_1:55927116-55927135 Msa0363460:CDS 30.0%
AGTAATTGCAAATATACAGG+GGG + chr3_1:55927173-55927192 None:intergenic 30.0%
CAGTAATTGCAAATATACAG+GGG + chr3_1:55927174-55927193 None:intergenic 30.0%
CCAGTAATTGCAAATATACA+GGG + chr3_1:55927175-55927194 None:intergenic 30.0%
TCCAGTAATTGCAAATATAC+AGG + chr3_1:55927176-55927195 None:intergenic 30.0%
! ATTTGTAGATTCCTTGGTTT+TGG + chr3_1:55927379-55927398 None:intergenic 30.0%
CAAGGAATCTACAAATTACT+GGG - chr3_1:55927383-55927402 Msa0363460:CDS 30.0%
TTGTAATATTAGCGGTTTCT+GGG + chr3_1:55927453-55927472 None:intergenic 30.0%
AGAAACCGCTAATATTACAA+GGG - chr3_1:55927453-55927472 Msa0363460:CDS 30.0%
TTTACCCCTTGTAATATTAG+CGG + chr3_1:55927461-55927480 None:intergenic 30.0%
TAATATCGTTCATCATGTTG+AGG - chr3_1:55927501-55927520 Msa0363460:CDS 30.0%
CTGACAACTAAAAATAAAGG+TGG + chr3_1:55927548-55927567 None:intergenic 30.0%
!!! GTTTTTTCGTCAAAAACAAG+TGG - chr3_1:55927665-55927684 Msa0363460:CDS 30.0%
AATTTGTATCCAACTTTGCT+CGG + chr3_1:55927926-55927945 None:intergenic 30.0%
AAAAAGGAGGAAAGAGTAAA+TGG - chr3_1:55928212-55928231 Msa0363460:intron 30.0%
TAAGTGTAAAAGTAGAGACA+GGG + chr3_1:55928444-55928463 None:intergenic 30.0%
ATAAGTGTAAAAGTAGAGAC+AGG + chr3_1:55928445-55928464 None:intergenic 30.0%
! CATTTTCTTGGAAACATTTG+TGG + chr3_1:55928608-55928627 None:intergenic 30.0%
TCCAAGAAAATGTATTGGAT+TGG - chr3_1:55928616-55928635 Msa0363460:intron 30.0%
! TCCAATCCAATACATTTTCT+TGG + chr3_1:55928620-55928639 None:intergenic 30.0%
AGAAATGGAAGATTATGAGT+TGG - chr3_1:55928831-55928850 Msa0363460:intron 30.0%
GAAATGGAAGATTATGAGTT+GGG - chr3_1:55928832-55928851 Msa0363460:intron 30.0%
AAATGGAAGATTATGAGTTG+GGG - chr3_1:55928833-55928852 Msa0363460:intron 30.0%
! TTGTGTTGGACTAATTTTTG+AGG - chr3_1:55928918-55928937 Msa0363460:intron 30.0%
ACAGCTAATATAGGAACAAT+AGG + chr3_1:55928985-55929004 None:intergenic 30.0%
TATTGTTCCTATATTAGCTG+TGG - chr3_1:55928984-55929003 Msa0363460:intron 30.0%
AAGAAAACCACAGCTAATAT+AGG + chr3_1:55928994-55929013 None:intergenic 30.0%
TTCTTTCAAGACAAAATGCA+TGG - chr3_1:55929009-55929028 Msa0363460:intron 30.0%
TCTTTCAAGACAAAATGCAT+GGG - chr3_1:55929010-55929029 Msa0363460:intron 30.0%
! ACATTCTTCAACTTTAGAAG+AGG - chr3_1:55929149-55929168 Msa0363460:intron 30.0%
! CATTCTTCAACTTTAGAAGA+GGG - chr3_1:55929150-55929169 Msa0363460:intron 30.0%
!! TGAATTGGTTCTACTTGAAT+CGG + chr3_1:55929217-55929236 None:intergenic 30.0%
TGTTGTGAACCATATATGTT+TGG - chr3_1:55929284-55929303 Msa0363460:intron 30.0%
TGAACCATATATGTTTGGTT+AGG - chr3_1:55929289-55929308 Msa0363460:intron 30.0%
GAACCATATATGTTTGGTTA+GGG - chr3_1:55929290-55929309 Msa0363460:intron 30.0%
ATACCCTAACCAAACATATA+TGG + chr3_1:55929296-55929315 None:intergenic 30.0%
ATATATGTTTGGTTAGGGTA+TGG - chr3_1:55929295-55929314 Msa0363460:intron 30.0%
TATATGTTTGGTTAGGGTAT+GGG - chr3_1:55929296-55929315 Msa0363460:intron 30.0%
ATAGATAATGTTGAGAATGC+AGG - chr3_1:55929507-55929526 Msa0363460:exon 30.0%
CCCTGTATATTTGCAATTAC+TGG - chr3_1:55927172-55927191 Msa0363460:CDS 35.0%
! CCAGTAATTTGTAGATTCCT+TGG + chr3_1:55927385-55927404 None:intergenic 35.0%
CCAAGGAATCTACAAATTAC+TGG - chr3_1:55927382-55927401 Msa0363460:CDS 35.0%
CTTGTAATATTAGCGGTTTC+TGG + chr3_1:55927454-55927473 None:intergenic 35.0%
CAGAAACCGCTAATATTACA+AGG - chr3_1:55927452-55927471 Msa0363460:CDS 35.0%
GAAACCGCTAATATTACAAG+GGG - chr3_1:55927454-55927473 Msa0363460:CDS 35.0%
GGTTGTCGTTAATCATGTTT+AGG - chr3_1:55927522-55927541 Msa0363460:CDS 35.0%
AGTGTATTTGCAAGCTAAAC+AGG + chr3_1:55927785-55927804 None:intergenic 35.0%
! AGAATGTTTCTTTGGCTTCA+TGG + chr3_1:55928042-55928061 None:intergenic 35.0%
AGCCAAAGAAACATTCTCAT+TGG - chr3_1:55928045-55928064 Msa0363460:CDS 35.0%
CTCCAATGAGAATGTTTCTT+TGG + chr3_1:55928050-55928069 None:intergenic 35.0%
TTTCCAGACCAAATAACGAA+TGG - chr3_1:55928079-55928098 Msa0363460:CDS 35.0%
CTTATTTGCTCATCCCAATT+AGG - chr3_1:55928460-55928479 Msa0363460:intron 35.0%
GGAAACATTTGTGGAATTTG+AGG + chr3_1:55928599-55928618 None:intergenic 35.0%
CTTGAAAGCTAGTTGTGTAA+GGG + chr3_1:55928689-55928708 None:intergenic 35.0%
TCTTGAAAGCTAGTTGTGTA+AGG + chr3_1:55928690-55928709 None:intergenic 35.0%
!! TACACAACTAGCTTTCAAGA+AGG - chr3_1:55928690-55928709 Msa0363460:intron 35.0%
CTTTCAAGAAGGTTGTGAAA+AGG - chr3_1:55928701-55928720 Msa0363460:intron 35.0%
GCTACTTGTATTACTCTAGT+AGG - chr3_1:55928772-55928791 Msa0363460:intron 35.0%
TCACTTTCATAGCCATAACA+TGG - chr3_1:55928878-55928897 Msa0363460:intron 35.0%
ACTAAAGACTTGCCATGTTA+TGG + chr3_1:55928893-55928912 None:intergenic 35.0%
ACATGGCAAGTCTTTAGTAT+TGG - chr3_1:55928895-55928914 Msa0363460:intron 35.0%
!! GTCTTTAGTATTGGTTGTGT+TGG - chr3_1:55928904-55928923 Msa0363460:intron 35.0%
AGACAAAATGCATGGGATTA+AGG - chr3_1:55929017-55929036 Msa0363460:intron 35.0%
AACAGCTAGTACCATAGAAA+TGG + chr3_1:55929043-55929062 None:intergenic 35.0%
TTTCTATGGTACTAGCTGTT+TGG - chr3_1:55929043-55929062 Msa0363460:intron 35.0%
TTCTATGGTACTAGCTGTTT+GGG - chr3_1:55929044-55929063 Msa0363460:intron 35.0%
! GAAGAATGTTTGCTAATGTG+AGG + chr3_1:55929138-55929157 None:intergenic 35.0%
ATATGTTTGGTTAGGGTATG+GGG - chr3_1:55929297-55929316 Msa0363460:intron 35.0%
TTAATGGAATCGACAACTCT+AGG + chr3_1:55929543-55929562 None:intergenic 35.0%
!! TAGAGTTGTCGATTCCATTA+AGG - chr3_1:55929542-55929561 Msa0363460:five_prime_UTR 35.0%
GTATATAGTCGGTGAATGAG+TGG - chr3_1:55927003-55927022 Msa0363460:three_prime_UTR 40.0%
TTCATGAAGGTCCAAAACCA+AGG - chr3_1:55927365-55927384 Msa0363460:CDS 40.0%
ATACATGTAGACACACGTGA+GGG + chr3_1:55927744-55927763 None:intergenic 40.0%
GATCCATTCGTTATTTGGTC+TGG + chr3_1:55928085-55928104 None:intergenic 40.0%
!! TCTTCCTAAAAGTGTTGCAG+CGG + chr3_1:55928182-55928201 None:intergenic 40.0%
AGGAGGAAAGAGTAAATGGA+TGG - chr3_1:55928216-55928235 Msa0363460:intron 40.0%
GAAACCAGCTAGTTGAACAA+CGG + chr3_1:55928245-55928264 None:intergenic 40.0%
! GCTTTTGTCTATGTCTCACT+TGG - chr3_1:55928367-55928386 Msa0363460:intron 40.0%
CTTGAGTGAATTGAGGAAGT+AGG + chr3_1:55928503-55928522 None:intergenic 40.0%
GTGTGAACTTGAGTGAATTG+AGG + chr3_1:55928510-55928529 None:intergenic 40.0%
GGGAGGAAGAAATTGTTAGA+AGG + chr3_1:55928555-55928574 None:intergenic 40.0%
TGGAATTTGAGGACTCACTT+TGG + chr3_1:55928588-55928607 None:intergenic 40.0%
AAGCTAGTTGTGTAAGGGAA+AGG + chr3_1:55928684-55928703 None:intergenic 40.0%
! CTAGTAGGACTTTTTGCAAG+TGG - chr3_1:55928787-55928806 Msa0363460:intron 40.0%
TGGCTATGAAAGTGAGATCA+AGG + chr3_1:55928873-55928892 None:intergenic 40.0%
TGGGATTAAGGCCATTTCTA+TGG - chr3_1:55929029-55929048 Msa0363460:intron 40.0%
TCTATGGTACTAGCTGTTTG+GGG - chr3_1:55929045-55929064 Msa0363460:intron 40.0%
!! GTGAGGAGTGTTTCTTGTTT+CGG + chr3_1:55929121-55929140 None:intergenic 40.0%
TCGGTGAATGAGTGGTAGAA+AGG - chr3_1:55927011-55927030 Msa0363460:three_prime_UTR 45.0%
CATACATGTAGACACACGTG+AGG + chr3_1:55927745-55927764 None:intergenic 45.0%
TATGCAGCACTTGTCTTAGC+AGG - chr3_1:55928151-55928170 Msa0363460:CDS 45.0%
!! CTAAAAGTGTTGCAGCGGAT+TGG + chr3_1:55928177-55928196 None:intergenic 45.0%
! CAATCCGCTGCAACACTTTT+AGG - chr3_1:55928175-55928194 Msa0363460:intron 45.0%
!! CTCACTTTGGAACACAAGGA+GGG + chr3_1:55928575-55928594 None:intergenic 45.0%
!! ACTCACTTTGGAACACAAGG+AGG + chr3_1:55928576-55928595 None:intergenic 45.0%
!! AGGACTCACTTTGGAACACA+AGG + chr3_1:55928579-55928598 None:intergenic 45.0%
TGCACTTTAGTTGCATCTGC+AGG - chr3_1:55928646-55928665 Msa0363460:intron 45.0%
GCACTTTAGTTGCATCTGCA+GGG - chr3_1:55928647-55928666 Msa0363460:intron 45.0%
TTAGTTGCATCTGCAGGGTA+TGG - chr3_1:55928652-55928671 Msa0363460:intron 45.0%
! GACTTTTTGCAAGTGGAGAG+TGG - chr3_1:55928794-55928813 Msa0363460:intron 45.0%
TTTGCAAGTGGAGAGTGGAA+TGG - chr3_1:55928799-55928818 Msa0363460:intron 45.0%
TTAGAAGAGGGTGACTGAAG+AGG - chr3_1:55929162-55929181 Msa0363460:intron 45.0%
TAGAAGAGGGTGACTGAAGA+GGG - chr3_1:55929163-55929182 Msa0363460:intron 45.0%
AAGAGGGTGATTGTCGATCT+GGG - chr3_1:55929179-55929198 Msa0363460:intron 45.0%
! AGCGGTTTCTGGGTTATCCA+CGG + chr3_1:55927443-55927462 None:intergenic 50.0%
ATGCAAAGGCCGAGCAAAGT+TGG - chr3_1:55927914-55927933 Msa0363460:CDS 50.0%
GCAACCGTTGTTCAACTAGC+TGG - chr3_1:55928238-55928257 Msa0363460:intron 50.0%
!! ACTTTGGAACACAAGGAGGG+AGG + chr3_1:55928572-55928591 None:intergenic 50.0%
GAAGAGGGTGATTGTCGATC+TGG - chr3_1:55929178-55929197 Msa0363460:intron 50.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 55926647 55929575 55926647 ID=Msa0363460;Name=Msa0363460
chr3_1 mRNA 55926647 55929575 55926647 ID=Msa0363460-mRNA-1;Parent=Msa0363460;Name=Msa0363460-mRNA-1;_AED=0.00;_eAED=0.00;_QI=56|1|1|1|1|1|2|396|393
chr3_1 exon 55926647 55928187 55926647 ID=Msa0363460-mRNA-1:exon:10239;Parent=Msa0363460-mRNA-1
chr3_1 exon 55929483 55929575 55929483 ID=Msa0363460-mRNA-1:exon:10238;Parent=Msa0363460-mRNA-1
chr3_1 five_prime_UTR 55929520 55929575 55929520 ID=Msa0363460-mRNA-1:five_prime_utr;Parent=Msa0363460-mRNA-1
chr3_1 CDS 55929483 55929519 55929483 ID=Msa0363460-mRNA-1:cds;Parent=Msa0363460-mRNA-1
chr3_1 CDS 55927043 55928187 55927043 ID=Msa0363460-mRNA-1:cds;Parent=Msa0363460-mRNA-1
chr3_1 three_prime_UTR 55926647 55927042 55926647 ID=Msa0363460-mRNA-1:three_prime_utr;Parent=Msa0363460-mRNA-1
Gene Sequence

>Msa0363460

ATGGGAGAAGCTCAAGATCTTCAACTTCAAAAAATGGAAGTCCATGAAGCCAAAGAAACATTCTCATTGGAGCAAAATAGCTTTCCAGACCAAATAACGAATGGATCAATTATGACCAATAAGAAAAGAATATACTATATCAAGGTAGCAATTTATGCAGCACTTGTCTTAGCAGGCCAATCCGCTGCAACACTTTTAGGAAGATTATACTATGAAAAAGGAGGAAAGAGTAAATGGATGGCAACCGTTGTTCAACTAGCTGGTTTCCCAATTCTACTACCATATTATTTTTTCATCTTATCATCCAAAAAACATACCACAAATAATAATATCATTGTTGATCCAAATCAATCATCTACATACATGCTAGCTTTTGTCTATGTCTCACTTGGCCTAATTAATGCATTAATTTGCTACTTATATTCATTAGGGCTAATGTATCTCCCTGTCTCTACTTTTACACTTATTTGCTCATCCCAATTAGGTTTCAATGCATTATTTTCCTACTTCCTCAATTCACTCAAGTTCACACCTTTCATAATCAACTCTTTAGTCCTTCTAACAATTTCTTCCTCCCTCCTTGTGTTCCAAAGTGAGTCCTCAAATTCCACAAATGTTTCCAAGAAAATGTATTGGATTGGATTCATATGCACTTTAGTTGCATCTGCAGGGTATGGATTGATCCTTTCCCTTACACAACTAGCTTTCAAGAAGGTTGTGAAAAGGCAAAATTTTAAAAGTGTGATGGACATGATAATATATACACAATTGGTAGCTACTTGTATTACTCTAGTAGGACTTTTTGCAAGTGGAGAGTGGAATGGTATAAAGAAAGAAATGGAAGATTATGAGTTGGGGAAAGCTTCTTATGTCCTTGATCTCACTTTCATAGCCATAACATGGCAAGTCTTTAGTATTGGTTGTGTTGGACTAATTTTTGAGGTTTCTTCGCTATTCTCTAATGCTATAAGTGTTTTAGGTTTGCCTATTGTTCCTATATTAGCTGTGGTTTTCTTTCAAGACAAAATGCATGGGATTAAGGCCATTTCTATGGTACTAGCTGTTTGGGGCTTCATATCATATTTGTATCAACAATATTTGGATGAGAATGACATTATAACCGAAACAAGAAACACTCCTCACATTAGCAAACATTCTTCAACTTTAGAAGAGGGTGACTGA

Protein sequence

>Msa0363460

MGEAQDLQLQKMEVHEAKETFSLEQNSFPDQITNGSIMTNKKRIYYIKVAIYAALVLAGQSAATLLGRLYYEKGGKSKWMATVVQLAGFPILLPYYFFILSSKKHTTNNNIIVDPNQSSTYMLAFVYVSLGLINALICYLYSLGLMYLPVSTFTLICSSQLGFNALFSYFLNSLKFTPFIINSLVLLTISSSLLVFQSESSNSTNVSKKMYWIGFICTLVASAGYGLILSLTQLAFKKVVKRQNFKSVMDMIIYTQLVATCITLVGLFASGEWNGIKKEMEDYELGKASYVLDLTFIAITWQVFSIGCVGLIFEVSSLFSNAISVLGLPIVPILAVVFFQDKMHGIKAISMVLAVWGFISYLYQQYLDENDIITETRNTPHISKHSSTLEEGD*