AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0455230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0455230 MtrunA17_Chr3g0102091 95.165 393 19 0 1 393 1 393 0.0 759
Msa0455230 MtrunA17_Chr4g0055041 51.744 344 161 3 45 384 33 375 1.52e-119 352
Msa0455230 MtrunA17_Chr2g0283381 49.398 332 164 2 40 370 35 363 3.27e-111 330
Msa0455230 MtrunA17_Chr7g0249781 49.848 329 160 2 41 369 23 346 4.68e-100 301
Msa0455230 MtrunA17_Chr6g0483671 77.457 173 32 1 218 390 4 169 6.99e-91 271
Msa0455230 MtrunA17_Chr3g0132551 35.202 321 198 4 55 365 24 344 6.05e-59 196
Msa0455230 MtrunA17_Chr5g0426921 33.728 338 207 5 59 386 32 362 1.13e-53 182
Msa0455230 MtrunA17_Chr3g0132561 30.994 342 191 4 34 365 3 309 1.37e-49 170
Msa0455230 MtrunA17_Chr8g0346091 32.682 358 219 5 23 371 24 368 5.01e-49 169
Msa0455230 MtrunA17_Chr2g0296491 32.320 362 219 9 3 357 31 373 1.08e-39 145
Msa0455230 MtrunA17_Chr2g0296481 33.225 307 184 8 68 367 72 364 4.33e-34 130
Msa0455230 MtrunA17_Chr2g0313931 45.669 127 61 3 45 170 30 149 1.56e-27 107
Msa0455230 MtrunA17_Chr2g0313921 43.284 67 36 1 213 277 2 68 2.13e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0455230 AT4G18220.1 56.234 393 158 4 1 386 1 386 5.86e-150 430
Msa0455230 AT4G18210.1 56.443 388 155 4 1 381 1 381 8.31e-146 419
Msa0455230 AT4G18205.1 49.870 385 173 5 5 389 13 377 5.94e-119 350
Msa0455230 AT4G18195.1 51.194 377 179 3 16 392 16 387 2.41e-114 339
Msa0455230 AT4G18197.1 47.949 390 190 4 9 392 1 383 2.94e-112 334
Msa0455230 AT4G18190.1 51.771 367 163 4 12 371 2 361 2.42e-109 326
Msa0455230 AT1G44750.1 48.308 325 162 1 45 369 42 360 2.01e-95 290
Msa0455230 AT1G44750.6 48.308 325 162 1 45 369 30 348 3.28e-95 289
Msa0455230 AT1G44750.2 48.308 325 162 1 45 369 30 348 3.28e-95 289
Msa0455230 AT1G44750.7 53.036 247 116 0 123 369 38 284 1.92e-84 259
Msa0455230 AT1G44750.5 53.036 247 116 0 123 369 38 284 1.92e-84 259
Msa0455230 AT1G44750.4 53.036 247 116 0 123 369 38 284 1.92e-84 259
Msa0455230 AT1G44750.8 53.036 247 116 0 123 369 38 284 1.92e-84 259
Msa0455230 AT1G44750.3 53.036 247 116 0 123 369 38 284 1.92e-84 259
Msa0455230 AT4G08700.1 41.351 370 195 4 1 369 1 349 5.21e-84 260
Msa0455230 AT5G41160.1 40.270 370 202 5 1 369 1 352 1.56e-78 246
Msa0455230 AT1G28220.1 36.562 320 188 6 59 371 16 327 9.27e-65 211
Msa0455230 AT2G33750.2 37.423 326 191 3 59 379 18 335 1.22e-63 207
Msa0455230 AT2G33750.1 36.202 337 191 4 59 379 18 346 2.26e-60 199
Msa0455230 AT1G28230.1 35.692 325 203 3 59 377 16 340 1.75e-59 197
Msa0455230 AT1G19770.1 31.420 331 205 4 59 368 59 388 4.06e-45 160
Msa0455230 AT1G57990.1 31.746 378 222 10 12 363 1 368 2.40e-42 153
Msa0455230 AT1G57980.1 33.071 381 217 10 12 363 1 372 6.55e-42 152
Msa0455230 AT1G57943.1 31.099 373 224 8 15 363 13 376 1.87e-39 145
Msa0455230 AT1G57943.2 30.831 373 224 8 15 363 13 375 2.14e-39 145
Msa0455230 AT1G47603.1 31.008 387 237 10 15 379 13 391 2.67e-38 142
Msa0455230 AT2G24220.2 31.761 318 200 4 45 358 54 358 9.44e-36 135
Msa0455230 AT2G24220.1 31.761 318 200 4 45 358 36 340 1.16e-35 134
Msa0455230 AT1G09860.1 30.704 355 218 8 42 375 25 372 8.04e-34 130
Msa0455230 AT1G75470.1 28.645 391 251 9 1 371 1 383 1.09e-32 127
Msa0455230 AT1G30840.2 30.619 307 203 3 59 363 38 336 1.38e-25 107
Msa0455230 AT1G30840.1 30.619 307 203 3 59 363 38 336 1.38e-25 107

Find 98 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTTGTATCAACAATATT+TGG 0.161384 3_3:-47801382 Msa0455230:CDS
TTTCATTCACTTTCAAAATA+TGG 0.166995 3_3:-47803775 Msa0455230:exon
CTCCAATGAGAATGTTTCTT+TGG 0.196693 3_3:+47802412 None:intergenic
TTCTATGGTACTAGCTGTTT+GGG 0.219148 3_3:-47801415 Msa0455230:CDS
ATAATGCATTGAAACCTAAT+TGG 0.241997 3_3:+47801985 None:intergenic
TAATTGATCCATTCGTTATT+TGG 0.243206 3_3:+47802372 None:intergenic
CTTATTTGCTCATCCCAATT+AGG 0.250351 3_3:-47801999 Msa0455230:CDS
AAATAATATGGTAGTAGAAT+TGG 0.273685 3_3:+47802194 None:intergenic
ATTTGCTACTTATATTCATT+AGG 0.276797 3_3:-47802053 Msa0455230:CDS
AGCGGGAGCTTCAACCTTAA+TGG 0.277606 3_3:+47800903 None:intergenic
GGAAGATTATACTATGAAAA+AGG 0.278195 3_3:-47802263 Msa0455230:CDS
TTTCTATGGTACTAGCTGTT+TGG 0.287753 3_3:-47801416 Msa0455230:CDS
AGACAAAATGCATGGGATTA+AGG 0.299496 3_3:-47801442 Msa0455230:CDS
TTTGCTACTTATATTCATTA+GGG 0.310509 3_3:-47802052 Msa0455230:CDS
TAGAGTTGTCGATTCCATTA+AGG 0.313410 3_3:-47800917 Msa0455230:three_prime_UTR
AGAATGTTTCTTTGGCTTCA+TGG 0.313976 3_3:+47802420 None:intergenic
TTCATTCACTTTCAAAATAT+GGG 0.322109 3_3:-47803774 Msa0455230:exon
TGGGATTAAGGCCATTTCTA+TGG 0.331205 3_3:-47801430 Msa0455230:CDS
AGCAAATTAATGCATTAATT+AGG 0.331530 3_3:+47802069 None:intergenic
GTGAGGAGTGTTTCTTGTTT+CGG 0.337873 3_3:+47801341 None:intergenic
AACAATGATATTATTATTTG+TGG 0.348869 3_3:+47802145 None:intergenic
GTCTTTAGTATTGGTTGTGT+TGG 0.355728 3_3:-47801555 Msa0455230:CDS
ATTCAATATGTAAGAAGATT+AGG 0.359410 3_3:-47801227 Msa0455230:three_prime_UTR
GAAATGGAAGATTATGAGTT+GGG 0.360853 3_3:-47801627 Msa0455230:CDS
TGAACCATATATGTTTGGTT+AGG 0.371443 3_3:-47801170 Msa0455230:three_prime_UTR
GAAGAGGGTGATTGTCGATC+TGG 0.375658 3_3:-47801281 Msa0455230:three_prime_UTR
AATCTTCTTACATATTGAAT+TGG 0.378814 3_3:+47801230 None:intergenic
ATACCCTAACCAAACATATA+TGG 0.379817 3_3:+47801166 None:intergenic
AATAATATGGTAGTAGAATT+GGG 0.381033 3_3:+47802195 None:intergenic
TCTTGAAAGCTAGTTGTGTA+AGG 0.383818 3_3:+47801772 None:intergenic
ACAGCTAATATAGGAACAAT+AGG 0.391827 3_3:+47801477 None:intergenic
GGAAACATTTGTGGAATTTG+AGG 0.396482 3_3:+47801863 None:intergenic
ACTAAAGACTTGCCATGTTA+TGG 0.397777 3_3:+47801569 None:intergenic
TGCACTTTAGTTGCATCTGC+AGG 0.400863 3_3:-47801813 Msa0455230:CDS
GTTGGTTAATATCATTGATT+CGG 0.415199 3_3:-47801205 Msa0455230:three_prime_UTR
TGAATTGGTTCTACTTGAAT+CGG 0.420336 3_3:+47801245 None:intergenic
GATCCATTCGTTATTTGGTC+TGG 0.422102 3_3:+47802377 None:intergenic
AAGAAAACCACAGCTAATAT+AGG 0.424462 3_3:+47801468 None:intergenic
TCCAAGAAAATGTATTGGAT+TGG 0.426703 3_3:-47801843 Msa0455230:CDS
TTAGTTGCATCTGCAGGGTA+TGG 0.427771 3_3:-47801807 Msa0455230:CDS
TATATGTTTGGTTAGGGTAT+GGG 0.430559 3_3:-47801163 Msa0455230:three_prime_UTR
ATATATGTTTGGTTAGGGTA+TGG 0.430775 3_3:-47801164 Msa0455230:three_prime_UTR
TATGCAGCACTTGTCTTAGC+AGG 0.431417 3_3:-47802308 Msa0455230:CDS
GGGAGGAAGAAATTGTTAGA+AGG 0.435023 3_3:+47801907 None:intergenic
GAACCATATATGTTTGGTTA+GGG 0.437359 3_3:-47801169 Msa0455230:three_prime_UTR
ATGTTTCCAAGAAAATGTAT+TGG 0.439252 3_3:-47801848 Msa0455230:CDS
ATATGTTTGGTTAGGGTATG+GGG 0.443296 3_3:-47801162 Msa0455230:three_prime_UTR
ATAAGTGTAAAAGTAGAGAC+AGG 0.447522 3_3:+47802017 None:intergenic
TAATGCATTGAAACCTAATT+GGG 0.449877 3_3:+47801986 None:intergenic
GAATGGTATAAAGAAAGAAA+TGG 0.452288 3_3:-47801643 Msa0455230:CDS
ACATGGCAAGTCTTTAGTAT+TGG 0.454459 3_3:-47801564 Msa0455230:CDS
CATGATAATATATACACAAT+TGG 0.457768 3_3:-47801712 Msa0455230:CDS
AGCCAAAGAAACATTCTCAT+TGG 0.458851 3_3:-47802414 Msa0455230:CDS
TGTTGTGAACCATATATGTT+TGG 0.459214 3_3:-47801175 Msa0455230:three_prime_UTR
ATAGATAATGTTGAGAATGC+AGG 0.465316 3_3:-47800952 Msa0455230:three_prime_UTR
AACAGCTAGTACCATAGAAA+TGG 0.466085 3_3:+47801419 None:intergenic
GCAACCGTTGTTCAACTAGC+TGG 0.475269 3_3:-47802221 Msa0455230:CDS
CTAAAAGTGTTGCAGCGGAT+TGG 0.480545 3_3:+47802285 None:intergenic
TTCTTTCAAGACAAAATGCA+TGG 0.482674 3_3:-47801450 Msa0455230:CDS
TGGAATTTGAGGACTCACTT+TGG 0.488137 3_3:+47801874 None:intergenic
GCTACTTGTATTACTCTAGT+AGG 0.496365 3_3:-47801687 Msa0455230:CDS
TTAATGGAATCGACAACTCT+AGG 0.502719 3_3:+47800919 None:intergenic
ATGTATGTAGATGATTGATT+TGG 0.505941 3_3:+47802119 None:intergenic
AGAAATGGAAGATTATGAGT+TGG 0.508458 3_3:-47801628 Msa0455230:CDS
TATTGTTCCTATATTAGCTG+TGG 0.512942 3_3:-47801475 Msa0455230:CDS
CTTTCAAGAAGGTTGTGAAA+AGG 0.516513 3_3:-47801758 Msa0455230:CDS
TGGCTATGAAAGTGAGATCA+AGG 0.518558 3_3:+47801589 None:intergenic
CTTGAGTGAATTGAGGAAGT+AGG 0.525823 3_3:+47801959 None:intergenic
GAAAAGAATATACTATATCA+AGG 0.526990 3_3:-47802339 Msa0455230:CDS
ACTAAAGAGTTGATTATGAA+AGG 0.535009 3_3:+47801930 None:intergenic
CTTGAAAGCTAGTTGTGTAA+GGG 0.540792 3_3:+47801773 None:intergenic
CATTCTTCAACTTTAGAAGA+GGG 0.542067 3_3:-47801309 Msa0455230:CDS
AGGACTCACTTTGGAACACA+AGG 0.547523 3_3:+47801883 None:intergenic
TAGAAGAGGGTGACTGAAGA+GGG 0.548566 3_3:-47801296 Msa0455230:exon
AAGAGGGTGATTGTCGATCT+GGG 0.548628 3_3:-47801280 Msa0455230:three_prime_UTR
AAGCTAGTTGTGTAAGGGAA+AGG 0.557780 3_3:+47801778 None:intergenic
TACACAACTAGCTTTCAAGA+AGG 0.562208 3_3:-47801769 Msa0455230:CDS
AATATGTAAGAAGATTAGGT+TGG 0.566299 3_3:-47801223 Msa0455230:three_prime_UTR
AGTGAATGAAATAACTTGAG+AGG 0.572386 3_3:+47803787 None:intergenic
TCTTTCAAGACAAAATGCAT+GGG 0.582272 3_3:-47801449 Msa0455230:CDS
TCTATGGTACTAGCTGTTTG+GGG 0.589297 3_3:-47801414 Msa0455230:CDS
TTTGCAAGTGGAGAGTGGAA+TGG 0.589737 3_3:-47801660 Msa0455230:CDS
GCACTTTAGTTGCATCTGCA+GGG 0.593181 3_3:-47801812 Msa0455230:CDS
ACATTCTTCAACTTTAGAAG+AGG 0.593996 3_3:-47801310 Msa0455230:CDS
AGGAGGAAAGAGTAAATGGA+TGG 0.594332 3_3:-47802243 Msa0455230:CDS
TTAGAAGAGGGTGACTGAAG+AGG 0.597747 3_3:-47801297 Msa0455230:exon
TCTTCCTAAAAGTGTTGCAG+CGG 0.607054 3_3:+47802280 None:intergenic
CTTAATATATGATAATGTGA+AGG 0.610082 3_3:-47801132 Msa0455230:three_prime_UTR
AAATGGAAGATTATGAGTTG+GGG 0.615707 3_3:-47801626 Msa0455230:CDS
GTGTGAACTTGAGTGAATTG+AGG 0.627114 3_3:+47801952 None:intergenic
TTTCCAGACCAAATAACGAA+TGG 0.633752 3_3:-47802380 Msa0455230:CDS
CTCACTTTGGAACACAAGGA+GGG 0.640434 3_3:+47801887 None:intergenic
TAAGTGTAAAAGTAGAGACA+GGG 0.654814 3_3:+47802018 None:intergenic
TCACTTTCATAGCCATAACA+TGG 0.656519 3_3:-47801581 Msa0455230:CDS
ACTCACTTTGGAACACAAGG+AGG 0.662657 3_3:+47801886 None:intergenic
GAAGAATGTTTGCTAATGTG+AGG 0.676409 3_3:+47801324 None:intergenic
ACTTTGGAACACAAGGAGGG+AGG 0.681387 3_3:+47801890 None:intergenic
GAAACCAGCTAGTTGAACAA+CGG 0.701516 3_3:+47802217 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAACTTTCAAAAA+CGG - chr3_3:47801125-47801144 Msa0455230:three_prime_UTR 10.0%
!!! TTTTTTTTTTTATGTAAAAG+TGG - chr3_3:47802107-47802126 Msa0455230:CDS 10.0%
!! CTAATAATATCTTTCAAAAA+CGG - chr3_3:47801090-47801109 Msa0455230:three_prime_UTR 15.0%
!!! TCTTCTTAATTATTTTAGTA+AGG - chr3_3:47801240-47801259 Msa0455230:three_prime_UTR 15.0%
!! TTTGAACTAATATTAACTAA+AGG - chr3_3:47801317-47801336 Msa0455230:CDS 15.0%
!!! ATTTTTTTTTTTTTTTACCG+TGG - chr3_3:47801682-47801701 Msa0455230:CDS 15.0%
!! ACATTTACATATCTATATAT+GGG + chr3_3:47801842-47801861 None:intergenic 15.0%
!! AACATTTACATATCTATATA+TGG + chr3_3:47801843-47801862 None:intergenic 15.0%
!! TACTTCAAAATAATAGAAAA+TGG - chr3_3:47801902-47801921 Msa0455230:CDS 15.0%
!! ATTTATACTACGATAAATAT+TGG - chr3_3:47802070-47802089 Msa0455230:CDS 15.0%
!! GTAATTAAAAAAAAATGCAA+AGG - chr3_3:47802159-47802178 Msa0455230:CDS 15.0%
!! ATATCATATATCCTTAATAT+TGG + chr3_3:47802237-47802256 None:intergenic 15.0%
!!! ATAGTATATTCTTTTCTTAT+TGG + chr3_3:47802375-47802394 None:intergenic 15.0%
!! GATAAGATGAAAAAATAATA+TGG + chr3_3:47802539-47802558 None:intergenic 15.0%
!! AACAATGATATTATTATTTG+TGG + chr3_3:47802576-47802595 None:intergenic 15.0%
!! ATATTTGTATCAACAATATT+TGG - chr3_3:47803336-47803355 Msa0455230:intron 15.0%
!! TTTCATTCACTTTCAAAATA+TGG - chr3_3:47800943-47800962 Msa0455230:three_prime_UTR 20.0%
!! TTCATTCACTTTCAAAATAT+GGG - chr3_3:47800944-47800963 Msa0455230:three_prime_UTR 20.0%
!!! ATTTTAGTAAGGTATATAGT+CGG - chr3_3:47801251-47801270 Msa0455230:three_prime_UTR 20.0%
!!! AAACAATTTTTTTTACAGAG+AGG + chr3_3:47801461-47801480 None:intergenic 20.0%
!!! CCTTAAATTTTGAAATTTCA+TGG + chr3_3:47801532-47801551 None:intergenic 20.0%
!! CCATGAAATTTCAAAATTTA+AGG - chr3_3:47801529-47801548 Msa0455230:CDS 20.0%
!! CAAAATTTACTCAAATTACA+GGG + chr3_3:47801564-47801583 None:intergenic 20.0%
!! TTACTGACAACTAAAAATAA+AGG + chr3_3:47801810-47801829 None:intergenic 20.0%
!! CATTTACATATCTATATATG+GGG + chr3_3:47801841-47801860 None:intergenic 20.0%
!! GAAAAGAATATACTATATCA+AGG - chr3_3:47802379-47802398 Msa0455230:CDS 20.0%
!! AATAATATGGTAGTAGAATT+GGG + chr3_3:47802526-47802545 None:intergenic 20.0%
!! AAATAATATGGTAGTAGAAT+TGG + chr3_3:47802527-47802546 None:intergenic 20.0%
!!! ATTATTTGTGGTATGTTTTT+TGG + chr3_3:47802564-47802583 None:intergenic 20.0%
!! AGCAAATTAATGCATTAATT+AGG + chr3_3:47802652-47802671 None:intergenic 20.0%
!!! ATTTGCTACTTATATTCATT+AGG - chr3_3:47802665-47802684 Msa0455230:intron 20.0%
!!! TTTGCTACTTATATTCATTA+GGG - chr3_3:47802666-47802685 Msa0455230:intron 20.0%
!! CATGATAATATATACACAAT+TGG - chr3_3:47803006-47803025 Msa0455230:intron 20.0%
!! AATCTTCTTACATATTGAAT+TGG + chr3_3:47803491-47803510 None:intergenic 20.0%
!! ATTCAATATGTAAGAAGATT+AGG - chr3_3:47803491-47803510 Msa0455230:intron 20.0%
!!! CTTAATATATGATAATGTGA+AGG - chr3_3:47803586-47803605 Msa0455230:intron 20.0%
! AGATCTTCAACTTCAAAAAA+TGG - chr3_3:47800976-47800995 Msa0455230:three_prime_UTR 25.0%
! GATCTTCAACTTCAAAAAAT+GGG - chr3_3:47800977-47800996 Msa0455230:three_prime_UTR 25.0%
! CAAAGAATCTTCAAATTACA+GGG + chr3_3:47801493-47801512 None:intergenic 25.0%
! TCAAAGAATCTTCAAATTAC+AGG + chr3_3:47801494-47801513 None:intergenic 25.0%
! CCAAAATTTACTCAAATTAC+AGG + chr3_3:47801565-47801584 None:intergenic 25.0%
!! CCTGTAATTTGAGTAAATTT+TGG - chr3_3:47801562-47801581 Msa0455230:CDS 25.0%
! ATTGTACAAAATCGATGAAA+TGG + chr3_3:47801599-47801618 None:intergenic 25.0%
! TGTACAATCAAAATTCATGA+AGG - chr3_3:47801611-47801630 Msa0455230:CDS 25.0%
! GATGAACGATATTAGAATTA+AGG + chr3_3:47801754-47801773 None:intergenic 25.0%
! TATACTACGATAAATATTGG+TGG - chr3_3:47802073-47802092 Msa0455230:CDS 25.0%
! ATACTACGATAAATATTGGT+GGG - chr3_3:47802074-47802093 Msa0455230:CDS 25.0%
!! ACCAATTTTGTCCAATATTA+AGG - chr3_3:47802223-47802242 Msa0455230:CDS 25.0%
! TCCTTAATATTGGACAAAAT+TGG + chr3_3:47802227-47802246 None:intergenic 25.0%
! TAATTGATCCATTCGTTATT+TGG + chr3_3:47802349-47802368 None:intergenic 25.0%
! GGAAGATTATACTATGAAAA+AGG - chr3_3:47802455-47802474 Msa0455230:intron 25.0%
! AGATTATACTATGAAAAAGG+AGG - chr3_3:47802458-47802477 Msa0455230:intron 25.0%
! ATGTATGTAGATGATTGATT+TGG + chr3_3:47802602-47802621 None:intergenic 25.0%
! TAATGCATTGAAACCTAATT+GGG + chr3_3:47802735-47802754 None:intergenic 25.0%
! ATAATGCATTGAAACCTAAT+TGG + chr3_3:47802736-47802755 None:intergenic 25.0%
!! ACTAAAGAGTTGATTATGAA+AGG + chr3_3:47802791-47802810 None:intergenic 25.0%
! ATGTTTCCAAGAAAATGTAT+TGG - chr3_3:47802870-47802889 Msa0455230:intron 25.0%
!!! GCAAAATTTTAAAAGTGTGA+TGG - chr3_3:47802982-47803001 Msa0455230:intron 25.0%
! GAATGGTATAAAGAAAGAAA+TGG - chr3_3:47803075-47803094 Msa0455230:intron 25.0%
!! TCTAATGCTATAAGTGTTTT+AGG - chr3_3:47803214-47803233 Msa0455230:intron 25.0%
! AATATGTAAGAAGATTAGGT+TGG - chr3_3:47803495-47803514 Msa0455230:intron 25.0%
!! GTTGGTTAATATCATTGATT+CGG - chr3_3:47803513-47803532 Msa0455230:intron 25.0%
AGTGAATGAAATAACTTGAG+AGG + chr3_3:47800934-47800953 None:intergenic 30.0%
GGAAAAAATATACGATGAAC+TGG - chr3_3:47801146-47801165 Msa0455230:three_prime_UTR 30.0%
! TGTTTTCTCTGGATTCTATT+GGG + chr3_3:47801185-47801204 None:intergenic 30.0%
! TTGTTTTCTCTGGATTCTAT+TGG + chr3_3:47801186-47801205 None:intergenic 30.0%
!! TTCTTACTAGTTGTTTTCTC+TGG + chr3_3:47801196-47801215 None:intergenic 30.0%
ACTAGTAAGAAACACAATCA+TGG - chr3_3:47801205-47801224 Msa0455230:three_prime_UTR 30.0%
! TTTTCTTGTACTATTAGCGA+TGG - chr3_3:47801375-47801394 Msa0455230:CDS 30.0%
AGTAATTGCAAATATACAGG+GGG + chr3_3:47801432-47801451 None:intergenic 30.0%
CAGTAATTGCAAATATACAG+GGG + chr3_3:47801433-47801452 None:intergenic 30.0%
CCAGTAATTGCAAATATACA+GGG + chr3_3:47801434-47801453 None:intergenic 30.0%
TCCAGTAATTGCAAATATAC+AGG + chr3_3:47801435-47801454 None:intergenic 30.0%
! ATTTGTAGATTCCTTGGTTT+TGG + chr3_3:47801638-47801657 None:intergenic 30.0%
CAAGGAATCTACAAATTACT+GGG - chr3_3:47801642-47801661 Msa0455230:CDS 30.0%
TTGTAATATTAGCGGTTTCT+GGG + chr3_3:47801712-47801731 None:intergenic 30.0%
AGAAACCGCTAATATTACAA+GGG - chr3_3:47801712-47801731 Msa0455230:CDS 30.0%
TTTACCCCTTGTAATATTAG+CGG + chr3_3:47801720-47801739 None:intergenic 30.0%
TAATATCGTTCATCATGTTG+AGG - chr3_3:47801760-47801779 Msa0455230:CDS 30.0%
CTGACAACTAAAAATAAAGG+TGG + chr3_3:47801807-47801826 None:intergenic 30.0%
!!! GTTTTTTCGTCAAAAACAAG+TGG - chr3_3:47801924-47801943 Msa0455230:CDS 30.0%
AATTTGTATCCAACTTTGCT+CGG + chr3_3:47802185-47802204 None:intergenic 30.0%
AAAAAGGAGGAAAGAGTAAA+TGG - chr3_3:47802471-47802490 Msa0455230:intron 30.0%
TAAGTGTAAAAGTAGAGACA+GGG + chr3_3:47802703-47802722 None:intergenic 30.0%
ATAAGTGTAAAAGTAGAGAC+AGG + chr3_3:47802704-47802723 None:intergenic 30.0%
! CATTTTCTTGGAAACATTTG+TGG + chr3_3:47802867-47802886 None:intergenic 30.0%
TCCAAGAAAATGTATTGGAT+TGG - chr3_3:47802875-47802894 Msa0455230:intron 30.0%
! TCCAATCCAATACATTTTCT+TGG + chr3_3:47802879-47802898 None:intergenic 30.0%
AGAAATGGAAGATTATGAGT+TGG - chr3_3:47803090-47803109 Msa0455230:intron 30.0%
GAAATGGAAGATTATGAGTT+GGG - chr3_3:47803091-47803110 Msa0455230:intron 30.0%
AAATGGAAGATTATGAGTTG+GGG - chr3_3:47803092-47803111 Msa0455230:intron 30.0%
! TTGTGTTGGACTAATTTTTG+AGG - chr3_3:47803177-47803196 Msa0455230:intron 30.0%
ACAGCTAATATAGGAACAAT+AGG + chr3_3:47803244-47803263 None:intergenic 30.0%
TATTGTTCCTATATTAGCTG+TGG - chr3_3:47803243-47803262 Msa0455230:intron 30.0%
AAGAAAACCACAGCTAATAT+AGG + chr3_3:47803253-47803272 None:intergenic 30.0%
TTCTTTCAAGACAAAATGCA+TGG - chr3_3:47803268-47803287 Msa0455230:intron 30.0%
TCTTTCAAGACAAAATGCAT+GGG - chr3_3:47803269-47803288 Msa0455230:intron 30.0%
! ACATTCTTCAACTTTAGAAG+AGG - chr3_3:47803408-47803427 Msa0455230:intron 30.0%
! CATTCTTCAACTTTAGAAGA+GGG - chr3_3:47803409-47803428 Msa0455230:intron 30.0%
!! TGAATTGGTTCTACTTGAAT+CGG + chr3_3:47803476-47803495 None:intergenic 30.0%
TGTTGTGAACCATATATGTT+TGG - chr3_3:47803543-47803562 Msa0455230:intron 30.0%
TGAACCATATATGTTTGGTT+AGG - chr3_3:47803548-47803567 Msa0455230:intron 30.0%
GAACCATATATGTTTGGTTA+GGG - chr3_3:47803549-47803568 Msa0455230:intron 30.0%
ATACCCTAACCAAACATATA+TGG + chr3_3:47803555-47803574 None:intergenic 30.0%
ATATATGTTTGGTTAGGGTA+TGG - chr3_3:47803554-47803573 Msa0455230:intron 30.0%
TATATGTTTGGTTAGGGTAT+GGG - chr3_3:47803555-47803574 Msa0455230:intron 30.0%
ATAGATAATGTTGAGAATGC+AGG - chr3_3:47803766-47803785 Msa0455230:exon 30.0%
CCCTGTATATTTGCAATTAC+TGG - chr3_3:47801431-47801450 Msa0455230:CDS 35.0%
! CCAGTAATTTGTAGATTCCT+TGG + chr3_3:47801644-47801663 None:intergenic 35.0%
CCAAGGAATCTACAAATTAC+TGG - chr3_3:47801641-47801660 Msa0455230:CDS 35.0%
CTTGTAATATTAGCGGTTTC+TGG + chr3_3:47801713-47801732 None:intergenic 35.0%
CAGAAACCGCTAATATTACA+AGG - chr3_3:47801711-47801730 Msa0455230:CDS 35.0%
GAAACCGCTAATATTACAAG+GGG - chr3_3:47801713-47801732 Msa0455230:CDS 35.0%
GGTTGTCGTTAATCATGTTT+AGG - chr3_3:47801781-47801800 Msa0455230:CDS 35.0%
AGTGTATTTGCAAGCTAAAC+AGG + chr3_3:47802044-47802063 None:intergenic 35.0%
! AGAATGTTTCTTTGGCTTCA+TGG + chr3_3:47802301-47802320 None:intergenic 35.0%
AGCCAAAGAAACATTCTCAT+TGG - chr3_3:47802304-47802323 Msa0455230:CDS 35.0%
CTCCAATGAGAATGTTTCTT+TGG + chr3_3:47802309-47802328 None:intergenic 35.0%
TTTCCAGACCAAATAACGAA+TGG - chr3_3:47802338-47802357 Msa0455230:CDS 35.0%
CTTATTTGCTCATCCCAATT+AGG - chr3_3:47802719-47802738 Msa0455230:intron 35.0%
GGAAACATTTGTGGAATTTG+AGG + chr3_3:47802858-47802877 None:intergenic 35.0%
CTTGAAAGCTAGTTGTGTAA+GGG + chr3_3:47802948-47802967 None:intergenic 35.0%
TCTTGAAAGCTAGTTGTGTA+AGG + chr3_3:47802949-47802968 None:intergenic 35.0%
!! TACACAACTAGCTTTCAAGA+AGG - chr3_3:47802949-47802968 Msa0455230:intron 35.0%
CTTTCAAGAAGGTTGTGAAA+AGG - chr3_3:47802960-47802979 Msa0455230:intron 35.0%
GCTACTTGTATTACTCTAGT+AGG - chr3_3:47803031-47803050 Msa0455230:intron 35.0%
TCACTTTCATAGCCATAACA+TGG - chr3_3:47803137-47803156 Msa0455230:intron 35.0%
ACTAAAGACTTGCCATGTTA+TGG + chr3_3:47803152-47803171 None:intergenic 35.0%
ACATGGCAAGTCTTTAGTAT+TGG - chr3_3:47803154-47803173 Msa0455230:intron 35.0%
!! GTCTTTAGTATTGGTTGTGT+TGG - chr3_3:47803163-47803182 Msa0455230:intron 35.0%
AGACAAAATGCATGGGATTA+AGG - chr3_3:47803276-47803295 Msa0455230:intron 35.0%
AACAGCTAGTACCATAGAAA+TGG + chr3_3:47803302-47803321 None:intergenic 35.0%
TTTCTATGGTACTAGCTGTT+TGG - chr3_3:47803302-47803321 Msa0455230:intron 35.0%
TTCTATGGTACTAGCTGTTT+GGG - chr3_3:47803303-47803322 Msa0455230:intron 35.0%
! GAAGAATGTTTGCTAATGTG+AGG + chr3_3:47803397-47803416 None:intergenic 35.0%
ATATGTTTGGTTAGGGTATG+GGG - chr3_3:47803556-47803575 Msa0455230:intron 35.0%
TTAATGGAATCGACAACTCT+AGG + chr3_3:47803802-47803821 None:intergenic 35.0%
!! TAGAGTTGTCGATTCCATTA+AGG - chr3_3:47803801-47803820 Msa0455230:five_prime_UTR 35.0%
GTATATAGTCGGTGAATGAG+TGG - chr3_3:47801262-47801281 Msa0455230:three_prime_UTR 40.0%
TTCATGAAGGTCCAAAACCA+AGG - chr3_3:47801624-47801643 Msa0455230:CDS 40.0%
ATACATGTAGACACACGTGA+GGG + chr3_3:47802003-47802022 None:intergenic 40.0%
GATCCATTCGTTATTTGGTC+TGG + chr3_3:47802344-47802363 None:intergenic 40.0%
!! TCTTCCTAAAAGTGTTGCAG+CGG + chr3_3:47802441-47802460 None:intergenic 40.0%
AGGAGGAAAGAGTAAATGGA+TGG - chr3_3:47802475-47802494 Msa0455230:intron 40.0%
GAAACCAGCTAGTTGAACAA+CGG + chr3_3:47802504-47802523 None:intergenic 40.0%
! GCTTTTGTCTATGTCTCACT+TGG - chr3_3:47802626-47802645 Msa0455230:intron 40.0%
CTTGAGTGAATTGAGGAAGT+AGG + chr3_3:47802762-47802781 None:intergenic 40.0%
GTGTGAACTTGAGTGAATTG+AGG + chr3_3:47802769-47802788 None:intergenic 40.0%
GGGAGGAAGAAATTGTTAGA+AGG + chr3_3:47802814-47802833 None:intergenic 40.0%
TGGAATTTGAGGACTCACTT+TGG + chr3_3:47802847-47802866 None:intergenic 40.0%
AAGCTAGTTGTGTAAGGGAA+AGG + chr3_3:47802943-47802962 None:intergenic 40.0%
! CTAGTAGGACTTTTTGCAAG+TGG - chr3_3:47803046-47803065 Msa0455230:intron 40.0%
TGGCTATGAAAGTGAGATCA+AGG + chr3_3:47803132-47803151 None:intergenic 40.0%
TGGGATTAAGGCCATTTCTA+TGG - chr3_3:47803288-47803307 Msa0455230:intron 40.0%
TCTATGGTACTAGCTGTTTG+GGG - chr3_3:47803304-47803323 Msa0455230:intron 40.0%
!! GTGAGGAGTGTTTCTTGTTT+CGG + chr3_3:47803380-47803399 None:intergenic 40.0%
TCGGTGAATGAGTGGTAGAA+AGG - chr3_3:47801270-47801289 Msa0455230:three_prime_UTR 45.0%
CATACATGTAGACACACGTG+AGG + chr3_3:47802004-47802023 None:intergenic 45.0%
TATGCAGCACTTGTCTTAGC+AGG - chr3_3:47802410-47802429 Msa0455230:CDS 45.0%
!! CTAAAAGTGTTGCAGCGGAT+TGG + chr3_3:47802436-47802455 None:intergenic 45.0%
! CAATCCGCTGCAACACTTTT+AGG - chr3_3:47802434-47802453 Msa0455230:intron 45.0%
!! CTCACTTTGGAACACAAGGA+GGG + chr3_3:47802834-47802853 None:intergenic 45.0%
!! ACTCACTTTGGAACACAAGG+AGG + chr3_3:47802835-47802854 None:intergenic 45.0%
!! AGGACTCACTTTGGAACACA+AGG + chr3_3:47802838-47802857 None:intergenic 45.0%
TGCACTTTAGTTGCATCTGC+AGG - chr3_3:47802905-47802924 Msa0455230:intron 45.0%
GCACTTTAGTTGCATCTGCA+GGG - chr3_3:47802906-47802925 Msa0455230:intron 45.0%
TTAGTTGCATCTGCAGGGTA+TGG - chr3_3:47802911-47802930 Msa0455230:intron 45.0%
! GACTTTTTGCAAGTGGAGAG+TGG - chr3_3:47803053-47803072 Msa0455230:intron 45.0%
TTTGCAAGTGGAGAGTGGAA+TGG - chr3_3:47803058-47803077 Msa0455230:intron 45.0%
TTAGAAGAGGGTGACTGAAG+AGG - chr3_3:47803421-47803440 Msa0455230:intron 45.0%
TAGAAGAGGGTGACTGAAGA+GGG - chr3_3:47803422-47803441 Msa0455230:intron 45.0%
AAGAGGGTGATTGTCGATCT+GGG - chr3_3:47803438-47803457 Msa0455230:intron 45.0%
! AGCGGTTTCTGGGTTATCCA+CGG + chr3_3:47801702-47801721 None:intergenic 50.0%
ATGCAAAGGCCGAGCAAAGT+TGG - chr3_3:47802173-47802192 Msa0455230:CDS 50.0%
GCAACCGTTGTTCAACTAGC+TGG - chr3_3:47802497-47802516 Msa0455230:intron 50.0%
!! ACTTTGGAACACAAGGAGGG+AGG + chr3_3:47802831-47802850 None:intergenic 50.0%
GAAGAGGGTGATTGTCGATC+TGG - chr3_3:47803437-47803456 Msa0455230:intron 50.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 47800906 47803834 47800906 ID=Msa0455230;Name=Msa0455230
chr3_3 mRNA 47800906 47803834 47800906 ID=Msa0455230-mRNA-1;Parent=Msa0455230;Name=Msa0455230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=56|1|1|1|1|1|2|396|393
chr3_3 exon 47800906 47802446 47800906 ID=Msa0455230-mRNA-1:exon:8880;Parent=Msa0455230-mRNA-1
chr3_3 exon 47803742 47803834 47803742 ID=Msa0455230-mRNA-1:exon:8879;Parent=Msa0455230-mRNA-1
chr3_3 five_prime_UTR 47803779 47803834 47803779 ID=Msa0455230-mRNA-1:five_prime_utr;Parent=Msa0455230-mRNA-1
chr3_3 CDS 47803742 47803778 47803742 ID=Msa0455230-mRNA-1:cds;Parent=Msa0455230-mRNA-1
chr3_3 CDS 47801302 47802446 47801302 ID=Msa0455230-mRNA-1:cds;Parent=Msa0455230-mRNA-1
chr3_3 three_prime_UTR 47800906 47801301 47800906 ID=Msa0455230-mRNA-1:three_prime_utr;Parent=Msa0455230-mRNA-1
Gene Sequence

>Msa0455230

ATGGGAGAAGCTCAAGATCTTCAACTTCAAAAAATGGAAGTCCATGAAGCCAAAGAAACATTCTCATTGGAGCAAAATAGCTTTCCAGACCAAATAACGAATGGATCAATTATGACCAATAAGAAAAGAATATACTATATCAAGGTAGCAATTTATGCAGCACTTGTCTTAGCAGGCCAATCCGCTGCAACACTTTTAGGAAGATTATACTATGAAAAAGGAGGAAAGAGTAAATGGATGGCAACCGTTGTTCAACTAGCTGGTTTCCCAATTCTACTACCATATTATTTTTTCATCTTATCATCCAAAAAACATACCACAAATAATAATATCATTGTTGATCCAAATCAATCATCTACATACATGCTAGCTTTTGTCTATGTCTCACTTGGCCTAATTAATGCATTAATTTGCTACTTATATTCATTAGGGCTAATGTATCTCCCTGTCTCTACTTTTACACTTATTTGCTCATCCCAATTAGGTTTCAATGCATTATTTTCCTACTTCCTCAATTCACTCAAGTTCACACCTTTCATAATCAACTCTTTAGTCCTTCTAACAATTTCTTCCTCCCTCCTTGTGTTCCAAAGTGAGTCCTCAAATTCCACAAATGTTTCCAAGAAAATGTATTGGATTGGATTCATATGCACTTTAGTTGCATCTGCAGGGTATGGATTGATCCTTTCCCTTACACAACTAGCTTTCAAGAAGGTTGTGAAAAGGCAAAATTTTAAAAGTGTGATGGACATGATAATATATACACAATTGGTAGCTACTTGTATTACTCTAGTAGGACTTTTTGCAAGTGGAGAGTGGAATGGTATAAAGAAAGAAATGGAAGATTATGAGTTGGGGAAAGCTTCTTATGTCCTTGATCTCACTTTCATAGCCATAACATGGCAAGTCTTTAGTATTGGTTGTGTTGGACTAATTTTTGAGGTTTCTTCGCTATTCTCTAATGCTATAAGTGTTTTAGGTTTGCCTATTGTTCCTATATTAGCTGTGGTTTTCTTTCAAGACAAAATGCATGGGATTAAGGCCATTTCTATGGTACTAGCTGTTTGGGGCTTCATATCATATTTGTATCAACAATATTTGGATGAGAATGACATTATAACCGAAACAAGAAACACTCCTCACATTAGCAAACATTCTTCAACTTTAGAAGAGGGTGACTGA

Protein sequence

>Msa0455230

MGEAQDLQLQKMEVHEAKETFSLEQNSFPDQITNGSIMTNKKRIYYIKVAIYAALVLAGQSAATLLGRLYYEKGGKSKWMATVVQLAGFPILLPYYFFILSSKKHTTNNNIIVDPNQSSTYMLAFVYVSLGLINALICYLYSLGLMYLPVSTFTLICSSQLGFNALFSYFLNSLKFTPFIINSLVLLTISSSLLVFQSESSNSTNVSKKMYWIGFICTLVASAGYGLILSLTQLAFKKVVKRQNFKSVMDMIIYTQLVATCITLVGLFASGEWNGIKKEMEDYELGKASYVLDLTFIAITWQVFSIGCVGLIFEVSSLFSNAISVLGLPIVPILAVVFFQDKMHGIKAISMVLAVWGFISYLYQQYLDENDIITETRNTPHISKHSSTLEEGD*