Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0937780 | Msa0969270 | 0.814198 | 1.740805e-51 | -8.615850e-47 |
| Msa0937780 | Msa0969540 | 0.827273 | 1.714042e-54 | -8.615850e-47 |
| Msa0937780 | Msa0969670 | 0.836478 | 9.142467e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0937780 | MtrunA17_Chr5g0427251 | 92.664 | 259 | 7 | 1 | 1 | 259 | 524 | 770 | 1.90e-167 | 495 |
| Msa0937780 | MtrunA17_Chr5g0448351 | 48.837 | 258 | 118 | 3 | 2 | 259 | 489 | 732 | 2.79e-73 | 242 |
| Msa0937780 | MtrunA17_Chr5g0401841 | 56.061 | 66 | 20 | 3 | 121 | 183 | 4 | 63 | 4.23e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0937780 | AT4G24610.3 | 66.409 | 259 | 75 | 1 | 1 | 259 | 449 | 695 | 2.62e-116 | 359 |
| Msa0937780 | AT4G24610.1 | 66.409 | 259 | 75 | 1 | 1 | 259 | 445 | 691 | 2.79e-116 | 359 |
| Msa0937780 | AT4G24610.2 | 66.409 | 259 | 75 | 1 | 1 | 259 | 449 | 695 | 2.92e-116 | 359 |
| Msa0937780 | AT4G24610.4 | 66.409 | 259 | 75 | 1 | 1 | 259 | 445 | 691 | 3.05e-116 | 359 |
| Msa0937780 | AT5G65440.2 | 58.301 | 259 | 94 | 2 | 1 | 259 | 351 | 595 | 6.35e-101 | 316 |
| Msa0937780 | AT5G65440.1 | 58.301 | 259 | 94 | 2 | 1 | 259 | 351 | 595 | 7.13e-101 | 317 |
| Msa0937780 | AT5G65440.8 | 58.301 | 259 | 94 | 2 | 1 | 259 | 351 | 595 | 7.13e-101 | 317 |
| Msa0937780 | AT5G65440.9 | 58.301 | 259 | 94 | 2 | 1 | 259 | 351 | 595 | 7.13e-101 | 317 |
| Msa0937780 | AT5G65440.5 | 58.301 | 259 | 94 | 2 | 1 | 259 | 392 | 636 | 1.41e-100 | 316 |
| Msa0937780 | AT5G65440.6 | 58.301 | 259 | 94 | 2 | 1 | 259 | 392 | 636 | 1.50e-100 | 316 |
| Msa0937780 | AT5G65440.4 | 58.301 | 259 | 94 | 2 | 1 | 259 | 392 | 636 | 1.50e-100 | 316 |
| Msa0937780 | AT5G65440.7 | 58.301 | 259 | 94 | 2 | 1 | 259 | 392 | 636 | 1.50e-100 | 316 |
| Msa0937780 | AT5G65440.3 | 51.536 | 293 | 94 | 3 | 1 | 259 | 392 | 670 | 7.04e-94 | 299 |
| Msa0937780 | AT5G48310.2 | 46.718 | 259 | 124 | 3 | 1 | 259 | 425 | 669 | 1.23e-72 | 241 |
| Msa0937780 | AT5G48310.1 | 46.718 | 259 | 124 | 3 | 1 | 259 | 452 | 696 | 1.72e-72 | 240 |
Find 54 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGAGTTTGCTTCATATTA+TGG | 0.166810 | 6_3:-9245774 | Msa0937780:CDS |
| GATTCCAAGGGAAAGCATTT+TGG | 0.208871 | 6_3:-9246271 | Msa0937780:CDS |
| CTATTTCCCTTCATGATAAC+AGG | 0.279831 | 6_3:+9245541 | None:intergenic |
| CAGTCATGCAGCTCCTGTTT+TGG | 0.307799 | 6_3:-9244983 | Msa0937780:CDS |
| CAGTTTCTGTCGCTACTTCC+AGG | 0.309945 | 6_3:-9244902 | Msa0937780:CDS |
| AGAAGTTGCAATGAAAGTTC+AGG | 0.359320 | 6_3:-9245847 | Msa0937780:CDS |
| TTAACAGCCGGTTCCAAAAC+AGG | 0.371139 | 6_3:+9244970 | None:intergenic |
| AAATCATCTCCAAGACTATC+TGG | 0.373542 | 6_3:+9246310 | None:intergenic |
| GTAGCGACAGAAACTGGTTT+TGG | 0.383783 | 6_3:+9244909 | None:intergenic |
| CTGGAAGTAGCGACAGAAAC+TGG | 0.388804 | 6_3:+9244903 | None:intergenic |
| CTTGATGAGTCATCTTTCTC+TGG | 0.397249 | 6_3:-9245033 | Msa0937780:CDS |
| CAAAACAGGAGCTGCATGAC+TGG | 0.397378 | 6_3:+9244984 | None:intergenic |
| AATTACATGGTCCATGGAAA+TGG | 0.432076 | 6_3:-9245803 | Msa0937780:CDS |
| TCCATGGACCATGTAATTCA+AGG | 0.448124 | 6_3:+9245808 | None:intergenic |
| GAGCCAGACCATGAGCTTGT+TGG | 0.456837 | 6_3:-9246083 | Msa0937780:CDS |
| AACAGCAGATTGCCTTAACT+TGG | 0.461204 | 6_3:-9245581 | Msa0937780:CDS |
| GCAGATTATATACCAAGTTA+AGG | 0.465872 | 6_3:+9245569 | None:intergenic |
| AGATGACAATAGTCATCTTA+AGG | 0.472987 | 6_3:-9246024 | Msa0937780:intron |
| GGCTGCTATAGCTGATAATC+CGG | 0.475819 | 6_3:-9246230 | Msa0937780:intron |
| TCTTATCAGAATCGACTACT+AGG | 0.490024 | 6_3:-9245114 | Msa0937780:intron |
| TTCTGTCGCTACTTCCAGGT+TGG | 0.492464 | 6_3:-9244898 | Msa0937780:CDS |
| GAAGTTGCAATGAAAGTTCA+GGG | 0.494648 | 6_3:-9245846 | Msa0937780:CDS |
| ACGCCCAAAATGCTTTCCCT+TGG | 0.498791 | 6_3:+9246267 | None:intergenic |
| TTGCCAACAAGCTCATGGTC+TGG | 0.507971 | 6_3:+9246080 | None:intergenic |
| GAACTCAAGTTTCTCCAACC+TGG | 0.514162 | 6_3:+9244884 | None:intergenic |
| TATTGAAGTTCAAGATTCCA+AGG | 0.517716 | 6_3:-9246284 | Msa0937780:CDS |
| GCTTGCACCTGTTATCATGA+AGG | 0.534068 | 6_3:-9245548 | Msa0937780:CDS |
| AGCTTGTAAAGTTTAACAGC+CGG | 0.536736 | 6_3:+9244958 | None:intergenic |
| AAGTTCAGGGCTTTCAGCAA+AGG | 0.539878 | 6_3:-9245833 | Msa0937780:CDS |
| ATCTTTCTCTGGTATCGTTG+AGG | 0.540922 | 6_3:-9245022 | Msa0937780:CDS |
| ATGACTATTGTCATCTGCAC+TGG | 0.548196 | 6_3:+9246031 | None:intergenic |
| TAGATATCTATCGTATGTCA+TGG | 0.550386 | 6_3:-9245617 | Msa0937780:CDS |
| CAAAGGAACCTTGAATTACA+TGG | 0.551755 | 6_3:-9245816 | Msa0937780:CDS |
| ACCTTGAATTACATGGTCCA+TGG | 0.565387 | 6_3:-9245809 | Msa0937780:CDS |
| TATCAGCTATAGCAGCCACT+TGG | 0.565413 | 6_3:+9246236 | None:intergenic |
| CTTGCACCTGTTATCATGAA+GGG | 0.565811 | 6_3:-9245547 | Msa0937780:CDS |
| GTATCTTGCCAACAAGCTCA+TGG | 0.570307 | 6_3:+9246075 | None:intergenic |
| GGAGCTGCATGACTGGATGC+TGG | 0.571659 | 6_3:+9244991 | None:intergenic |
| TCTGTCAAGAGCCATTTCCA+TGG | 0.578372 | 6_3:+9245792 | None:intergenic |
| AAGTTAAGGCAATCTGCTGT+TGG | 0.596013 | 6_3:+9245583 | None:intergenic |
| TCATTGCAACTTCTAGAACC+AGG | 0.599580 | 6_3:+9245856 | None:intergenic |
| TCACGATATCTTATCTCCTG+AGG | 0.617999 | 6_3:-9244932 | Msa0937780:CDS |
| ATTGAAGTTCAAGATTCCAA+GGG | 0.630054 | 6_3:-9246283 | Msa0937780:CDS |
| AACTTCTTTGAGCCACCAAG+AGG | 0.633554 | 6_3:-9245515 | Msa0937780:intron |
| ATGTTGATGATACCTCTTGG+TGG | 0.638496 | 6_3:+9245503 | None:intergenic |
| CTGAGATATATACGAAGCTG+AGG | 0.640658 | 6_3:-9245746 | Msa0937780:intron |
| CAAGCTCATGGTCTGGCTCG+CGG | 0.647022 | 6_3:+9246087 | None:intergenic |
| TCGACTACTAGGAGAGACCA+AGG | 0.647615 | 6_3:-9245103 | Msa0937780:CDS |
| AGTCTGACAAAGTACGCTGG+TGG | 0.654966 | 6_3:-9246118 | Msa0937780:CDS |
| AAGGCAATCTGCTGTTGGTG+TGG | 0.664226 | 6_3:+9245588 | None:intergenic |
| TGGGCGTGTTCTTGTCCAAG+TGG | 0.675367 | 6_3:-9246251 | Msa0937780:CDS |
| GGAGACAGTTGTATATGACC+TGG | 0.679123 | 6_3:-9245874 | Msa0937780:CDS |
| AACAGTCTGACAAAGTACGC+TGG | 0.679236 | 6_3:-9246121 | Msa0937780:intron |
| GTTGCAGTGTGGTTCTGTAG+CGG | 0.681208 | 6_3:-9245895 | Msa0937780:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTAAATATTTCAGC+AGG | + | chr6_3:9245591-9245610 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTCTTATCTAATA+CGG | - | chr6_3:9246137-9246156 | Msa0937780:intron | 15.0% |
| !! | AATAAATTAAATATTTCAGC+AGG | + | chr6_3:9245591-9245610 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTCTTATCTAATA+CGG | - | chr6_3:9246137-9246156 | Msa0937780:intron | 15.0% |
| !! | AATATAATTCACCATTATAC+TGG | - | chr6_3:9244920-9244939 | Msa0937780:CDS | 20.0% |
| !! | AATATATTCAACCAGTATAA+TGG | + | chr6_3:9244934-9244953 | None:intergenic | 20.0% |
| !! | AAATGCAATGAAAATATTAC+CGG | + | chr6_3:9245079-9245098 | None:intergenic | 20.0% |
| !!! | ATGTATTATACATTTGCTAT+AGG | - | chr6_3:9245314-9245333 | Msa0937780:intron | 20.0% |
| !! | AGACAGTAAAATGATATATT+AGG | + | chr6_3:9245367-9245386 | None:intergenic | 20.0% |
| !! | AAACTTTGTCTAAATTATTG+TGG | - | chr6_3:9245611-9245630 | Msa0937780:CDS | 20.0% |
| !!! | TTTTGTTTTAAGATCAACTA+TGG | - | chr6_3:9245872-9245891 | Msa0937780:CDS | 20.0% |
| !!! | TTTGTTTTAAGATCAACTAT+GGG | - | chr6_3:9245873-9245892 | Msa0937780:CDS | 20.0% |
| !! | TCAAATAAATCAATTCAAAC+AGG | + | chr6_3:9245899-9245918 | None:intergenic | 20.0% |
| !! | AATATAATTCACCATTATAC+TGG | - | chr6_3:9244920-9244939 | Msa0937780:CDS | 20.0% |
| !! | AATATATTCAACCAGTATAA+TGG | + | chr6_3:9244934-9244953 | None:intergenic | 20.0% |
| !! | AAATGCAATGAAAATATTAC+CGG | + | chr6_3:9245079-9245098 | None:intergenic | 20.0% |
| !!! | ATGTATTATACATTTGCTAT+AGG | - | chr6_3:9245314-9245333 | Msa0937780:intron | 20.0% |
| !! | AGACAGTAAAATGATATATT+AGG | + | chr6_3:9245367-9245386 | None:intergenic | 20.0% |
| !! | AAACTTTGTCTAAATTATTG+TGG | - | chr6_3:9245611-9245630 | Msa0937780:CDS | 20.0% |
| !!! | TTTTGTTTTAAGATCAACTA+TGG | - | chr6_3:9245872-9245891 | Msa0937780:CDS | 20.0% |
| !!! | TTTGTTTTAAGATCAACTAT+GGG | - | chr6_3:9245873-9245892 | Msa0937780:CDS | 20.0% |
| !! | TCAAATAAATCAATTCAAAC+AGG | + | chr6_3:9245899-9245918 | None:intergenic | 20.0% |
| !! | ATATCATTTTACTGTCTTTG+TGG | - | chr6_3:9245370-9245389 | Msa0937780:intron | 25.0% |
| ! | GGATAAACAGTTTAATTAAG+TGG | + | chr6_3:9246050-9246069 | None:intergenic | 25.0% |
| ! | TTATCTAATACGGTTCAATT+TGG | - | chr6_3:9246147-9246166 | Msa0937780:intron | 25.0% |
| !! | ATATCATTTTACTGTCTTTG+TGG | - | chr6_3:9245370-9245389 | Msa0937780:intron | 25.0% |
| ! | GGATAAACAGTTTAATTAAG+TGG | + | chr6_3:9246050-9246069 | None:intergenic | 25.0% |
| ! | TTATCTAATACGGTTCAATT+TGG | - | chr6_3:9246147-9246166 | Msa0937780:intron | 25.0% |
| TATTGAAGTTCAAGATTCCA+AGG | - | chr6_3:9245003-9245022 | Msa0937780:CDS | 30.0% | |
| ATTGAAGTTCAAGATTCCAA+GGG | - | chr6_3:9245004-9245023 | Msa0937780:CDS | 30.0% | |
| AGATGACAATAGTCATCTTA+AGG | - | chr6_3:9245263-9245282 | Msa0937780:intron | 30.0% | |
| ! | ACAGAGTTTGCTTCATATTA+TGG | - | chr6_3:9245513-9245532 | Msa0937780:intron | 30.0% |
| TAGATATCTATCGTATGTCA+TGG | - | chr6_3:9245670-9245689 | Msa0937780:intron | 30.0% | |
| GCAGATTATATACCAAGTTA+AGG | + | chr6_3:9245721-9245740 | None:intergenic | 30.0% | |
| !! | ATCGTATGTTGACTTGTATA+TGG | + | chr6_3:9246081-9246100 | None:intergenic | 30.0% |
| !!! | GTCAACATACGATTTTTAGT+TGG | - | chr6_3:9246088-9246107 | Msa0937780:CDS | 30.0% |
| ! | TATCTGTTCAATTTTGTCCT+TGG | + | chr6_3:9246204-9246223 | None:intergenic | 30.0% |
| TATTGAAGTTCAAGATTCCA+AGG | - | chr6_3:9245003-9245022 | Msa0937780:CDS | 30.0% | |
| ATTGAAGTTCAAGATTCCAA+GGG | - | chr6_3:9245004-9245023 | Msa0937780:CDS | 30.0% | |
| AGATGACAATAGTCATCTTA+AGG | - | chr6_3:9245263-9245282 | Msa0937780:intron | 30.0% | |
| ! | ACAGAGTTTGCTTCATATTA+TGG | - | chr6_3:9245513-9245532 | Msa0937780:intron | 30.0% |
| TAGATATCTATCGTATGTCA+TGG | - | chr6_3:9245670-9245689 | Msa0937780:intron | 30.0% | |
| GCAGATTATATACCAAGTTA+AGG | + | chr6_3:9245721-9245740 | None:intergenic | 30.0% | |
| !! | ATCGTATGTTGACTTGTATA+TGG | + | chr6_3:9246081-9246100 | None:intergenic | 30.0% |
| !!! | GTCAACATACGATTTTTAGT+TGG | - | chr6_3:9246088-9246107 | Msa0937780:CDS | 30.0% |
| ! | TATCTGTTCAATTTTGTCCT+TGG | + | chr6_3:9246204-9246223 | None:intergenic | 30.0% |
| ! | TACAGTTTTCCAGATAGTCT+TGG | - | chr6_3:9244968-9244987 | Msa0937780:CDS | 35.0% |
| AAATCATCTCCAAGACTATC+TGG | + | chr6_3:9244980-9244999 | None:intergenic | 35.0% | |
| !!! | ATTCCAAGGGAAAGCATTTT+GGG | - | chr6_3:9245017-9245036 | Msa0937780:CDS | 35.0% |
| TTAATGATCACCACTCAAAC+AGG | + | chr6_3:9245122-9245141 | None:intergenic | 35.0% | |
| ! | GTACTTTGTCAGACTGTTTT+CGG | + | chr6_3:9245164-9245183 | None:intergenic | 35.0% |
| AGAAGTTGCAATGAAAGTTC+AGG | - | chr6_3:9245440-9245459 | Msa0937780:intron | 35.0% | |
| GAAGTTGCAATGAAAGTTCA+GGG | - | chr6_3:9245441-9245460 | Msa0937780:intron | 35.0% | |
| CAAAGGAACCTTGAATTACA+TGG | - | chr6_3:9245471-9245490 | Msa0937780:intron | 35.0% | |
| AATTACATGGTCCATGGAAA+TGG | - | chr6_3:9245484-9245503 | Msa0937780:intron | 35.0% | |
| CTATTTCCCTTCATGATAAC+AGG | + | chr6_3:9245749-9245768 | None:intergenic | 35.0% | |
| !! | GATATGTTGATGATACCTCT+TGG | + | chr6_3:9245790-9245809 | None:intergenic | 35.0% |
| TCTTATCAGAATCGACTACT+AGG | - | chr6_3:9246173-9246192 | Msa0937780:intron | 35.0% | |
| AGCTTGTAAAGTTTAACAGC+CGG | + | chr6_3:9246332-9246351 | None:intergenic | 35.0% | |
| ! | TACAGTTTTCCAGATAGTCT+TGG | - | chr6_3:9244968-9244987 | Msa0937780:CDS | 35.0% |
| AAATCATCTCCAAGACTATC+TGG | + | chr6_3:9244980-9244999 | None:intergenic | 35.0% | |
| !!! | ATTCCAAGGGAAAGCATTTT+GGG | - | chr6_3:9245017-9245036 | Msa0937780:CDS | 35.0% |
| TTAATGATCACCACTCAAAC+AGG | + | chr6_3:9245122-9245141 | None:intergenic | 35.0% | |
| ! | GTACTTTGTCAGACTGTTTT+CGG | + | chr6_3:9245164-9245183 | None:intergenic | 35.0% |
| AGAAGTTGCAATGAAAGTTC+AGG | - | chr6_3:9245440-9245459 | Msa0937780:intron | 35.0% | |
| GAAGTTGCAATGAAAGTTCA+GGG | - | chr6_3:9245441-9245460 | Msa0937780:intron | 35.0% | |
| CAAAGGAACCTTGAATTACA+TGG | - | chr6_3:9245471-9245490 | Msa0937780:intron | 35.0% | |
| AATTACATGGTCCATGGAAA+TGG | - | chr6_3:9245484-9245503 | Msa0937780:intron | 35.0% | |
| CTATTTCCCTTCATGATAAC+AGG | + | chr6_3:9245749-9245768 | None:intergenic | 35.0% | |
| !! | GATATGTTGATGATACCTCT+TGG | + | chr6_3:9245790-9245809 | None:intergenic | 35.0% |
| TCTTATCAGAATCGACTACT+AGG | - | chr6_3:9246173-9246192 | Msa0937780:intron | 35.0% | |
| AGCTTGTAAAGTTTAACAGC+CGG | + | chr6_3:9246332-9246351 | None:intergenic | 35.0% | |
| !!! | GATTCCAAGGGAAAGCATTT+TGG | - | chr6_3:9245016-9245035 | Msa0937780:CDS | 40.0% |
| GTTATTAGTGCCTGTTTGAG+TGG | - | chr6_3:9245109-9245128 | Msa0937780:intron | 40.0% | |
| ATGACTATTGTCATCTGCAC+TGG | + | chr6_3:9245259-9245278 | None:intergenic | 40.0% | |
| !! | TCATTGCAACTTCTAGAACC+AGG | + | chr6_3:9245434-9245453 | None:intergenic | 40.0% |
| ACCTTGAATTACATGGTCCA+TGG | - | chr6_3:9245478-9245497 | Msa0937780:intron | 40.0% | |
| TCCATGGACCATGTAATTCA+AGG | + | chr6_3:9245482-9245501 | None:intergenic | 40.0% | |
| CTGAGATATATACGAAGCTG+AGG | - | chr6_3:9245541-9245560 | Msa0937780:CDS | 40.0% | |
| AAGTTAAGGCAATCTGCTGT+TGG | + | chr6_3:9245707-9245726 | None:intergenic | 40.0% | |
| AACAGCAGATTGCCTTAACT+TGG | - | chr6_3:9245706-9245725 | Msa0937780:intron | 40.0% | |
| CTTGCACCTGTTATCATGAA+GGG | - | chr6_3:9245740-9245759 | Msa0937780:intron | 40.0% | |
| !! | ATGTTGATGATACCTCTTGG+TGG | + | chr6_3:9245787-9245806 | None:intergenic | 40.0% |
| TATTTGAGCACGTCAACTTG+TGG | - | chr6_3:9245912-9245931 | Msa0937780:intron | 40.0% | |
| CTTGATGAGTCATCTTTCTC+TGG | - | chr6_3:9246254-9246273 | Msa0937780:CDS | 40.0% | |
| ATCTTTCTCTGGTATCGTTG+AGG | - | chr6_3:9246265-9246284 | Msa0937780:CDS | 40.0% | |
| TCACGATATCTTATCTCCTG+AGG | - | chr6_3:9246355-9246374 | Msa0937780:intron | 40.0% | |
| !!! | GATTCCAAGGGAAAGCATTT+TGG | - | chr6_3:9245016-9245035 | Msa0937780:CDS | 40.0% |
| GTTATTAGTGCCTGTTTGAG+TGG | - | chr6_3:9245109-9245128 | Msa0937780:intron | 40.0% | |
| ATGACTATTGTCATCTGCAC+TGG | + | chr6_3:9245259-9245278 | None:intergenic | 40.0% | |
| !! | TCATTGCAACTTCTAGAACC+AGG | + | chr6_3:9245434-9245453 | None:intergenic | 40.0% |
| ACCTTGAATTACATGGTCCA+TGG | - | chr6_3:9245478-9245497 | Msa0937780:intron | 40.0% | |
| TCCATGGACCATGTAATTCA+AGG | + | chr6_3:9245482-9245501 | None:intergenic | 40.0% | |
| CTGAGATATATACGAAGCTG+AGG | - | chr6_3:9245541-9245560 | Msa0937780:CDS | 40.0% | |
| AAGTTAAGGCAATCTGCTGT+TGG | + | chr6_3:9245707-9245726 | None:intergenic | 40.0% | |
| AACAGCAGATTGCCTTAACT+TGG | - | chr6_3:9245706-9245725 | Msa0937780:intron | 40.0% | |
| CTTGCACCTGTTATCATGAA+GGG | - | chr6_3:9245740-9245759 | Msa0937780:intron | 40.0% | |
| !! | ATGTTGATGATACCTCTTGG+TGG | + | chr6_3:9245787-9245806 | None:intergenic | 40.0% |
| TATTTGAGCACGTCAACTTG+TGG | - | chr6_3:9245912-9245931 | Msa0937780:intron | 40.0% | |
| CTTGATGAGTCATCTTTCTC+TGG | - | chr6_3:9246254-9246273 | Msa0937780:CDS | 40.0% | |
| ATCTTTCTCTGGTATCGTTG+AGG | - | chr6_3:9246265-9246284 | Msa0937780:CDS | 40.0% | |
| TCACGATATCTTATCTCCTG+AGG | - | chr6_3:9246355-9246374 | Msa0937780:intron | 40.0% | |
| TATCAGCTATAGCAGCCACT+TGG | + | chr6_3:9245054-9245073 | None:intergenic | 45.0% | |
| GGCTGCTATAGCTGATAATC+CGG | - | chr6_3:9245057-9245076 | Msa0937780:CDS | 45.0% | |
| AACAGTCTGACAAAGTACGC+TGG | - | chr6_3:9245166-9245185 | Msa0937780:intron | 45.0% | |
| GTATCTTGCCAACAAGCTCA+TGG | + | chr6_3:9245215-9245234 | None:intergenic | 45.0% | |
| GGAGACAGTTGTATATGACC+TGG | - | chr6_3:9245413-9245432 | Msa0937780:intron | 45.0% | |
| AAGTTCAGGGCTTTCAGCAA+AGG | - | chr6_3:9245454-9245473 | Msa0937780:intron | 45.0% | |
| TCTGTCAAGAGCCATTTCCA+TGG | + | chr6_3:9245498-9245517 | None:intergenic | 45.0% | |
| GCTTGCACCTGTTATCATGA+AGG | - | chr6_3:9245739-9245758 | Msa0937780:intron | 45.0% | |
| AACTTCTTTGAGCCACCAAG+AGG | - | chr6_3:9245772-9245791 | Msa0937780:CDS | 45.0% | |
| GACTTGTATATGGCTACGCT+TGG | + | chr6_3:9246071-9246090 | None:intergenic | 45.0% | |
| ! | TTAACAGCCGGTTCCAAAAC+AGG | + | chr6_3:9246320-9246339 | None:intergenic | 45.0% |
| !! | GTAGCGACAGAAACTGGTTT+TGG | + | chr6_3:9246381-9246400 | None:intergenic | 45.0% |
| TATCAGCTATAGCAGCCACT+TGG | + | chr6_3:9245054-9245073 | None:intergenic | 45.0% | |
| GGCTGCTATAGCTGATAATC+CGG | - | chr6_3:9245057-9245076 | Msa0937780:CDS | 45.0% | |
| AACAGTCTGACAAAGTACGC+TGG | - | chr6_3:9245166-9245185 | Msa0937780:intron | 45.0% | |
| GTATCTTGCCAACAAGCTCA+TGG | + | chr6_3:9245215-9245234 | None:intergenic | 45.0% | |
| GGAGACAGTTGTATATGACC+TGG | - | chr6_3:9245413-9245432 | Msa0937780:intron | 45.0% | |
| AAGTTCAGGGCTTTCAGCAA+AGG | - | chr6_3:9245454-9245473 | Msa0937780:intron | 45.0% | |
| TCTGTCAAGAGCCATTTCCA+TGG | + | chr6_3:9245498-9245517 | None:intergenic | 45.0% | |
| GCTTGCACCTGTTATCATGA+AGG | - | chr6_3:9245739-9245758 | Msa0937780:intron | 45.0% | |
| AACTTCTTTGAGCCACCAAG+AGG | - | chr6_3:9245772-9245791 | Msa0937780:CDS | 45.0% | |
| GACTTGTATATGGCTACGCT+TGG | + | chr6_3:9246071-9246090 | None:intergenic | 45.0% | |
| ! | TTAACAGCCGGTTCCAAAAC+AGG | + | chr6_3:9246320-9246339 | None:intergenic | 45.0% |
| !! | GTAGCGACAGAAACTGGTTT+TGG | + | chr6_3:9246381-9246400 | None:intergenic | 45.0% |
| ACGCCCAAAATGCTTTCCCT+TGG | + | chr6_3:9245023-9245042 | None:intergenic | 50.0% | |
| AGTCTGACAAAGTACGCTGG+TGG | - | chr6_3:9245169-9245188 | Msa0937780:intron | 50.0% | |
| TTGCCAACAAGCTCATGGTC+TGG | + | chr6_3:9245210-9245229 | None:intergenic | 50.0% | |
| CTGTCTTTGTGGTTGCAGTG+TGG | - | chr6_3:9245381-9245400 | Msa0937780:intron | 50.0% | |
| ! | GTTGCAGTGTGGTTCTGTAG+CGG | - | chr6_3:9245392-9245411 | Msa0937780:intron | 50.0% |
| AAGGCAATCTGCTGTTGGTG+TGG | + | chr6_3:9245702-9245721 | None:intergenic | 50.0% | |
| TCGACTACTAGGAGAGACCA+AGG | - | chr6_3:9246184-9246203 | Msa0937780:intron | 50.0% | |
| CAAAACAGGAGCTGCATGAC+TGG | + | chr6_3:9246306-9246325 | None:intergenic | 50.0% | |
| ! | CAGTCATGCAGCTCCTGTTT+TGG | - | chr6_3:9246304-9246323 | Msa0937780:CDS | 50.0% |
| !!! | TGCAGCTCCTGTTTTGGAAC+CGG | - | chr6_3:9246310-9246329 | Msa0937780:CDS | 50.0% |
| !!! | CAGAAACTGGTTTTGGCCTC+AGG | + | chr6_3:9246374-9246393 | None:intergenic | 50.0% |
| CTGGAAGTAGCGACAGAAAC+TGG | + | chr6_3:9246387-9246406 | None:intergenic | 50.0% | |
| CAGTTTCTGTCGCTACTTCC+AGG | - | chr6_3:9246385-9246404 | Msa0937780:intron | 50.0% | |
| TTCTGTCGCTACTTCCAGGT+TGG | - | chr6_3:9246389-9246408 | Msa0937780:intron | 50.0% | |
| ACGCCCAAAATGCTTTCCCT+TGG | + | chr6_3:9245023-9245042 | None:intergenic | 50.0% | |
| AGTCTGACAAAGTACGCTGG+TGG | - | chr6_3:9245169-9245188 | Msa0937780:intron | 50.0% | |
| TTGCCAACAAGCTCATGGTC+TGG | + | chr6_3:9245210-9245229 | None:intergenic | 50.0% | |
| CTGTCTTTGTGGTTGCAGTG+TGG | - | chr6_3:9245381-9245400 | Msa0937780:intron | 50.0% | |
| ! | GTTGCAGTGTGGTTCTGTAG+CGG | - | chr6_3:9245392-9245411 | Msa0937780:intron | 50.0% |
| AAGGCAATCTGCTGTTGGTG+TGG | + | chr6_3:9245702-9245721 | None:intergenic | 50.0% | |
| TCGACTACTAGGAGAGACCA+AGG | - | chr6_3:9246184-9246203 | Msa0937780:intron | 50.0% | |
| CAAAACAGGAGCTGCATGAC+TGG | + | chr6_3:9246306-9246325 | None:intergenic | 50.0% | |
| ! | CAGTCATGCAGCTCCTGTTT+TGG | - | chr6_3:9246304-9246323 | Msa0937780:CDS | 50.0% |
| !!! | TGCAGCTCCTGTTTTGGAAC+CGG | - | chr6_3:9246310-9246329 | Msa0937780:CDS | 50.0% |
| !!! | CAGAAACTGGTTTTGGCCTC+AGG | + | chr6_3:9246374-9246393 | None:intergenic | 50.0% |
| CTGGAAGTAGCGACAGAAAC+TGG | + | chr6_3:9246387-9246406 | None:intergenic | 50.0% | |
| CAGTTTCTGTCGCTACTTCC+AGG | - | chr6_3:9246385-9246404 | Msa0937780:intron | 50.0% | |
| TTCTGTCGCTACTTCCAGGT+TGG | - | chr6_3:9246389-9246408 | Msa0937780:intron | 50.0% | |
| TGGGCGTGTTCTTGTCCAAG+TGG | - | chr6_3:9245036-9245055 | Msa0937780:CDS | 55.0% | |
| GAGCCAGACCATGAGCTTGT+TGG | - | chr6_3:9245204-9245223 | Msa0937780:intron | 55.0% | |
| TGGGCGTGTTCTTGTCCAAG+TGG | - | chr6_3:9245036-9245055 | Msa0937780:CDS | 55.0% | |
| GAGCCAGACCATGAGCTTGT+TGG | - | chr6_3:9245204-9245223 | Msa0937780:intron | 55.0% | |
| ! | CAAGCTCATGGTCTGGCTCG+CGG | + | chr6_3:9245203-9245222 | None:intergenic | 60.0% |
| GGAGCTGCATGACTGGATGC+TGG | + | chr6_3:9246299-9246318 | None:intergenic | 60.0% | |
| ! | CAAGCTCATGGTCTGGCTCG+CGG | + | chr6_3:9245203-9245222 | None:intergenic | 60.0% |
| GGAGCTGCATGACTGGATGC+TGG | + | chr6_3:9246299-9246318 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 9244888 | 9246421 | 9244888 | ID=Msa0937780;Name=Msa0937780 |
| chr6_3 | mRNA | 9244888 | 9246421 | 9244888 | ID=Msa0937780-mRNA-1;Parent=Msa0937780;Name=Msa0937780-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0.2|0|0.5|0.8|0.66|6|0|261 |
| chr6_3 | exon | 9246417 | 9246421 | 9246417 | ID=Msa0937780-mRNA-1:exon:3005;Parent=Msa0937780-mRNA-1 |
| chr6_3 | exon | 9246231 | 9246336 | 9246231 | ID=Msa0937780-mRNA-1:exon:3004;Parent=Msa0937780-mRNA-1 |
| chr6_3 | exon | 9246025 | 9246138 | 9246025 | ID=Msa0937780-mRNA-1:exon:3003;Parent=Msa0937780-mRNA-1 |
| chr6_3 | exon | 9245747 | 9245910 | 9245747 | ID=Msa0937780-mRNA-1:exon:3002;Parent=Msa0937780-mRNA-1 |
| chr6_3 | exon | 9245516 | 9245672 | 9245516 | ID=Msa0937780-mRNA-1:exon:3001;Parent=Msa0937780-mRNA-1 |
| chr6_3 | exon | 9244888 | 9245127 | 9244888 | ID=Msa0937780-mRNA-1:exon:3000;Parent=Msa0937780-mRNA-1 |
| chr6_3 | CDS | 9246417 | 9246421 | 9246417 | ID=Msa0937780-mRNA-1:cds;Parent=Msa0937780-mRNA-1 |
| chr6_3 | CDS | 9246231 | 9246336 | 9246231 | ID=Msa0937780-mRNA-1:cds;Parent=Msa0937780-mRNA-1 |
| chr6_3 | CDS | 9246025 | 9246138 | 9246025 | ID=Msa0937780-mRNA-1:cds;Parent=Msa0937780-mRNA-1 |
| chr6_3 | CDS | 9245747 | 9245910 | 9245747 | ID=Msa0937780-mRNA-1:cds;Parent=Msa0937780-mRNA-1 |
| chr6_3 | CDS | 9245516 | 9245672 | 9245516 | ID=Msa0937780-mRNA-1:cds;Parent=Msa0937780-mRNA-1 |
| chr6_3 | CDS | 9244888 | 9245127 | 9244888 | ID=Msa0937780-mRNA-1:cds;Parent=Msa0937780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
