AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0969270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0969270 MtrunA17_Chr5g0427251 92.835 321 11 1 102 422 526 834 0.0 619
Msa0969270 MtrunA17_Chr5g0427251 100.000 91 0 0 12 102 355 445 7.04e-53 191
Msa0969270 MtrunA17_Chr5g0448351 46.610 354 167 6 102 449 490 827 6.38e-94 307
Msa0969270 MtrunA17_Chr5g0401841 56.061 66 20 3 220 282 4 63 1.60e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0969270 AT4G24610.2 64.000 325 105 1 100 424 449 761 2.06e-143 439
Msa0969270 AT4G24610.2 55.556 81 34 1 25 103 294 374 1.69e-18 89.4
Msa0969270 AT4G24610.3 64.000 325 105 1 100 424 449 761 2.13e-143 439
Msa0969270 AT4G24610.3 55.556 81 34 1 25 103 294 374 1.70e-18 89.4
Msa0969270 AT4G24610.1 64.000 325 105 1 100 424 445 757 2.23e-143 439
Msa0969270 AT4G24610.1 55.556 81 34 1 25 103 290 370 1.72e-18 89.4
Msa0969270 AT4G24610.4 64.000 325 105 1 100 424 445 757 2.32e-143 439
Msa0969270 AT4G24610.4 55.556 81 34 1 25 103 290 370 1.75e-18 89.0
Msa0969270 AT5G65440.2 52.754 345 147 3 102 446 353 681 9.33e-123 382
Msa0969270 AT5G65440.2 47.191 89 47 0 12 100 182 270 3.78e-19 91.3
Msa0969270 AT5G65440.1 52.754 345 147 3 102 446 353 681 1.10e-122 382
Msa0969270 AT5G65440.1 47.191 89 47 0 12 100 182 270 3.76e-19 91.3
Msa0969270 AT5G65440.8 52.754 345 147 3 102 446 353 681 1.10e-122 382
Msa0969270 AT5G65440.8 47.191 89 47 0 12 100 182 270 3.76e-19 91.3
Msa0969270 AT5G65440.9 52.754 345 147 3 102 446 353 681 1.10e-122 382
Msa0969270 AT5G65440.9 47.191 89 47 0 12 100 182 270 3.76e-19 91.3
Msa0969270 AT5G65440.5 52.754 345 147 3 102 446 394 722 1.85e-122 382
Msa0969270 AT5G65440.5 47.191 89 47 0 12 100 223 311 3.45e-19 91.3
Msa0969270 AT5G65440.6 52.754 345 147 3 102 446 394 722 3.20e-122 382
Msa0969270 AT5G65440.6 47.191 89 47 0 12 100 223 311 3.86e-19 91.3
Msa0969270 AT5G65440.4 52.754 345 147 3 102 446 394 722 3.20e-122 382
Msa0969270 AT5G65440.4 47.191 89 47 0 12 100 223 311 3.86e-19 91.3
Msa0969270 AT5G65440.7 52.754 345 147 3 102 446 394 722 3.20e-122 382
Msa0969270 AT5G65440.7 47.191 89 47 0 12 100 223 311 3.86e-19 91.3
Msa0969270 AT5G65440.3 48.285 379 146 4 102 446 394 756 4.10e-116 366
Msa0969270 AT5G65440.3 47.191 89 47 0 12 100 223 311 3.63e-19 91.3
Msa0969270 AT5G48310.2 47.812 320 153 3 100 419 425 730 1.70e-92 303
Msa0969270 AT5G48310.1 47.812 320 153 3 100 419 452 757 3.13e-92 303

Find 85 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGAGTTTGCTTCATATTA+TGG 0.166810 6_4:-722368 Msa0969270:CDS
CTTCTGGTTGGCACGCTCTT+AGG 0.188615 6_4:-723448 Msa0969270:CDS
GATTCCAAGGGAAAGCATTT+TGG 0.208871 6_4:-722865 Msa0969270:CDS
GGACAGATTAATAACATATA+TGG 0.248038 6_4:-721135 Msa0969270:CDS
CTATTTCCCTTCATGATAAC+AGG 0.279831 6_4:+722135 None:intergenic
AGTGACACATAAAATTAAAA+TGG 0.285788 6_4:-723513 Msa0969270:CDS
TCCATGGACCATGTAATTCT+AGG 0.298952 6_4:+722402 None:intergenic
CAGTCATGCAGCTCCTGTTT+TGG 0.307799 6_4:-721579 Msa0969270:CDS
CAGTTTCTGTCGCTACTTCC+AGG 0.309945 6_4:-721498 Msa0969270:intron
AAACACTGTGCATAAATCTT+AGG 0.314150 6_4:-721265 Msa0969270:CDS
TTCACCATTAGCTCCTCTTC+TGG 0.318680 6_4:+723749 None:intergenic
TGTGTTCATTATTAAGAATT+CGG 0.324071 6_4:-721156 Msa0969270:CDS
AGAAGTTGCAATGAAAGTTC+AGG 0.359320 6_4:-722441 Msa0969270:CDS
TTAACAGCCGGTTCCAAAAC+AGG 0.371139 6_4:+721566 None:intergenic
AAATCATCTCCAAGACTATC+TGG 0.373542 6_4:+722904 None:intergenic
ATGAAAATGGATTTAATGTC+TGG 0.381784 6_4:-724833 None:intergenic
TTGCAGTCAAAACTATCTTC+TGG 0.383266 6_4:-723464 Msa0969270:CDS
GTAGCGACAGAAACTGGTTT+TGG 0.383783 6_4:+721505 None:intergenic
CTGGAAGTAGCGACAGAAAC+TGG 0.388804 6_4:+721499 None:intergenic
CTTGATGAGTCATCTTTCTC+TGG 0.397249 6_4:-721629 Msa0969270:CDS
CAAAACAGGAGCTGCATGAC+TGG 0.397378 6_4:+721580 None:intergenic
GAATAATGAAAGCTGTTTGA+TGG 0.399448 6_4:-721324 Msa0969270:CDS
GGCTGCTATAGCTGATAATT+CGG 0.409953 6_4:-722824 Msa0969270:intron
GGCACGCTCTTAGGAAAGTT+CGG 0.428629 6_4:-723439 Msa0969270:intron
AATTACATGGTCCATGGAAA+TGG 0.428646 6_4:-722397 Msa0969270:CDS
GGATTTAATGTCTGGTTACA+AGG 0.443940 6_4:-724825 Msa0969270:intron
GAGCCAGACCATGAGCTTGT+TGG 0.456837 6_4:-722677 Msa0969270:CDS
AACAGCAGATTGCCTTAACT+TGG 0.461204 6_4:-722175 Msa0969270:CDS
GCAGATTATATACCAAGTTA+AGG 0.465872 6_4:+722163 None:intergenic
AGATGACAATAGTCATCTTA+AGG 0.472987 6_4:-722618 Msa0969270:intron
GACAGATTAATAACATATAT+GGG 0.473519 6_4:-721134 Msa0969270:CDS
ATAATCAAAATATACTTCCT+AGG 0.479944 6_4:-721214 Msa0969270:CDS
TCTTATCAGAATCGACTACT+AGG 0.490024 6_4:-721710 Msa0969270:intron
GAAGTTGCAATGAAAGTTCA+GGG 0.494648 6_4:-722440 Msa0969270:CDS
ACGCCCAAAATGCTTTCCCT+TGG 0.498791 6_4:+722861 None:intergenic
TCAACCAGAAGAGGAGCTAA+TGG 0.506702 6_4:-723753 Msa0969270:CDS
TTGCCAACAAGCTCATGGTC+TGG 0.507971 6_4:+722674 None:intergenic
TATTGAAGTTCAAGATTCCA+AGG 0.517716 6_4:-722878 Msa0969270:CDS
GCAGTACGCAAAGTCAAAGT+GGG 0.519161 6_4:-723572 Msa0969270:intron
TTGACTGCAAATTTGAGAAG+TGG 0.525517 6_4:+723477 None:intergenic
AAAACTTATTGGCAAGATGA+AGG 0.526439 6_4:-723681 Msa0969270:CDS
GCTTGCACCTGTTATCATGA+AGG 0.534068 6_4:-722142 Msa0969270:CDS
AGCTTGTAAAGTTTAACAGC+CGG 0.536736 6_4:+721554 None:intergenic
ACCTAGAATTACATGGTCCA+TGG 0.537176 6_4:-722403 Msa0969270:CDS
AAGTTCAGGGCTTTCAGCAA+AGG 0.539878 6_4:-722427 Msa0969270:CDS
ATCTTTCTCTGGTATCGTTG+AGG 0.540922 6_4:-721618 Msa0969270:CDS
ATGACTATTGTCATCTGCAC+TGG 0.548196 6_4:+722625 None:intergenic
TAGATATCTATCGTATGTCA+TGG 0.550386 6_4:-722211 Msa0969270:CDS
TATATTCATCTGTGTCTGAA+AGG 0.552223 6_4:+721354 None:intergenic
GACATGCTACAGCCAGTAGG+AGG 0.562749 6_4:+723542 None:intergenic
CTTGCACCTGTTATCATGAA+GGG 0.565811 6_4:-722141 Msa0969270:CDS
GAGCTAATGGTGAAATGCAA+TGG 0.566880 6_4:-723740 Msa0969270:CDS
GTATCTTGCCAACAAGCTCA+TGG 0.570307 6_4:+722669 None:intergenic
GGAGCTGCATGACTGGATGC+TGG 0.571659 6_4:+721587 None:intergenic
CAAAGGAACCTAGAATTACA+TGG 0.575331 6_4:-722410 Msa0969270:CDS
TATCAGCTATAGCAGCCACT+TGG 0.577953 6_4:+722830 None:intergenic
TCTGTCAAGAGCCATTTCCA+TGG 0.578372 6_4:+722386 None:intergenic
TGCAGTACGCAAAGTCAAAG+TGG 0.581751 6_4:-723573 Msa0969270:intron
AGTCAAAACTATCTTCTGGT+TGG 0.585669 6_4:-723460 Msa0969270:CDS
AGTGCTTCTTCAACCAGAAG+AGG 0.591826 6_4:-723762 Msa0969270:CDS
AAGTTAAGGCAATCTGCTGT+TGG 0.596013 6_4:+722177 None:intergenic
TTGAGAAAAGAAAGATACCT+AGG 0.596109 6_4:+721197 None:intergenic
CAATGGAGAACTTTCTAGTG+AGG 0.596450 6_4:-723723 Msa0969270:CDS
TCATTGCAACTTCTAGAACC+AGG 0.599580 6_4:+722450 None:intergenic
CTTCTGGTAAGCGGTAGACA+TGG 0.600601 6_4:+721292 None:intergenic
TCACGATATCTTATCTCCTG+AGG 0.617999 6_4:-721528 Msa0969270:CDS
CAGTACGCAAAGTCAAAGTG+GGG 0.626243 6_4:-723571 Msa0969270:CDS
ATTGAAGTTCAAGATTCCAA+GGG 0.630054 6_4:-722877 Msa0969270:CDS
AATGGAGAACTTTCTAGTGA+GGG 0.631445 6_4:-723722 Msa0969270:CDS
AACTTCTTTGAGCCACCAAG+AGG 0.633554 6_4:-722109 Msa0969270:intron
ATGTTGATGATACCTCTTGG+TGG 0.638496 6_4:+722097 None:intergenic
CTGAGATATATACGAAGCTG+AGG 0.640658 6_4:-722340 Msa0969270:intron
CAAGCTCATGGTCTGGCTCG+CGG 0.647022 6_4:+722681 None:intergenic
TCGACTACTAGGAGAGACCA+AGG 0.647615 6_4:-721699 Msa0969270:CDS
AGTCTGACAAAGTACGCTGG+TGG 0.654966 6_4:-722712 Msa0969270:CDS
TAAGCGGTAGACATGGTCAA+AGG 0.655113 6_4:+721299 None:intergenic
ATTGGCAAGATGAAGGTGCA+AGG 0.662707 6_4:-723674 Msa0969270:intron
AAGGCAATCTGCTGTTGGTG+TGG 0.664226 6_4:+722182 None:intergenic
GATGACATGCTACAGCCAGT+AGG 0.673386 6_4:+723539 None:intergenic
TGGGCGTGTTCTTGTCCAAG+TGG 0.675367 6_4:-722845 Msa0969270:CDS
ACATGCTACAGCCAGTAGGA+GGG 0.676190 6_4:+723543 None:intergenic
GGAGACAGTTGTATATGACC+TGG 0.679123 6_4:-722468 Msa0969270:CDS
AACAGTCTGACAAAGTACGC+TGG 0.679236 6_4:-722715 Msa0969270:intron
GTTGCAGTGTGGTTCTGTAG+CGG 0.681208 6_4:-722489 Msa0969270:intron
AGTACGCAAAGTCAAAGTGG+GGG 0.736804 6_4:-723570 Msa0969270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTACTATTTACTAAT+TGG - chr6_4:724487-724506 Msa0969270:intron 10.0%
!!! ACAAAATTTTCTCAATTTTT+TGG - chr6_4:721435-721454 Msa0969270:intron 15.0%
!! TATATTATCATATATGCTTA+TGG + chr6_4:721906-721925 None:intergenic 15.0%
!! AACTTATACAAATGAAAAAT+GGG + chr6_4:722790-722809 None:intergenic 15.0%
!! AAACTTATACAAATGAAAAA+TGG + chr6_4:722791-722810 None:intergenic 15.0%
!! ATAAAATAACTTACAACATA+TGG + chr6_4:722939-722958 None:intergenic 15.0%
!! AATAAATTAAATATTTCAGC+AGG + chr6_4:723643-723662 None:intergenic 15.0%
!!! ATTTTTTGTCTTATCTAATA+CGG - chr6_4:724187-724206 Msa0969270:intron 15.0%
!! AATTATTGAAGAGAGTAATT+AGG + chr6_4:721146-721165 None:intergenic 20.0%
!!! TTAATCATTGTTTTTGAAAG+AGG - chr6_4:721366-721385 Msa0969270:CDS 20.0%
!! AGTGACACATAAAATTAAAA+TGG - chr6_4:722420-722439 Msa0969270:CDS 20.0%
!!! ATGTATTATACATTTGCTAT+AGG - chr6_4:723366-723385 Msa0969270:intron 20.0%
!! AGACAGTAAAATGATATATT+AGG + chr6_4:723419-723438 None:intergenic 20.0%
!! AAACTTTGTCTAAATTATTG+TGG - chr6_4:723663-723682 Msa0969270:intron 20.0%
!!! TTTTGTTTTAAGATCAACTA+TGG - chr6_4:723923-723942 Msa0969270:intron 20.0%
!!! TTTGTTTTAAGATCAACTAT+GGG - chr6_4:723924-723943 Msa0969270:intron 20.0%
!! TCAAATAAATCAATTCAAAC+AGG + chr6_4:723950-723969 None:intergenic 20.0%
!! TTAACAACTAATATTATCTC+AGG - chr6_4:724528-724547 Msa0969270:intron 20.0%
!! ATAATCAAAATATACTTCCT+AGG - chr6_4:724719-724738 Msa0969270:intron 20.0%
!!! TTTCTTTTCTCAAACATATA+TGG - chr6_4:724746-724765 Msa0969270:intron 20.0%
!! TGTGTTCATTATTAAGAATT+CGG - chr6_4:724777-724796 Msa0969270:intron 20.0%
!! GACAGATTAATAACATATAT+GGG - chr6_4:724799-724818 Msa0969270:intron 20.0%
! TCAATGATCATTACTAGATT+AGG - chr6_4:721339-721358 Msa0969270:CDS 25.0%
! CAATGATCATTACTAGATTA+GGG - chr6_4:721340-721359 Msa0969270:CDS 25.0%
! TATTTGAATGTAACTACATG+TGG + chr6_4:721577-721596 None:intergenic 25.0%
! AGATTAGTAAGGAAAATCAA+TGG - chr6_4:721816-721835 Msa0969270:intron 25.0%
!! CATTCATTTTCCAAAAACAT+TGG + chr6_4:722033-722052 None:intergenic 25.0%
! TAAATTACATCAACACTTGA+AGG + chr6_4:722125-722144 None:intergenic 25.0%
!!! CCAATAAGTTTTTTCAGTTT+AGG + chr6_4:722244-722263 None:intergenic 25.0%
! CCTAAACTGAAAAAACTTAT+TGG - chr6_4:722241-722260 Msa0969270:CDS 25.0%
!! TTTTTATTATCCATGCCTTA+AGG - chr6_4:722698-722717 Msa0969270:CDS 25.0%
!! TTTTATTATCCATGCCTTAA+GGG - chr6_4:722699-722718 Msa0969270:CDS 25.0%
! AATATAATTCACCATTATGC+TGG - chr6_4:722972-722991 Msa0969270:intron 25.0%
! AATATATTCAACCAGCATAA+TGG + chr6_4:722986-723005 None:intergenic 25.0%
!! ATATCATTTTACTGTCTTTG+TGG - chr6_4:723422-723441 Msa0969270:intron 25.0%
! GGATAAACAGTTTAATTAAG+TGG + chr6_4:724100-724119 None:intergenic 25.0%
! TTATCTAATACGGTTCAATT+TGG - chr6_4:724197-724216 Msa0969270:intron 25.0%
! GGACAGATTAATAACATATA+TGG - chr6_4:724798-724817 Msa0969270:intron 25.0%
GAATGAAATACTATGTAGCA+CGG - chr6_4:721490-721509 Msa0969270:intron 30.0%
TCACTTTCACACATTGTTAT+TGG - chr6_4:721599-721618 Msa0969270:CDS 30.0%
ATAGCACAAATCACAAAGTT+AGG + chr6_4:721700-721719 None:intergenic 30.0%
TCTTTACTAAGAGATGCATT+TGG - chr6_4:722054-722073 Msa0969270:intron 30.0%
CTTTACTAAGAGATGCATTT+GGG - chr6_4:722055-722074 Msa0969270:intron 30.0%
AAAACTTATTGGCAAGATGA+AGG - chr6_4:722252-722271 Msa0969270:intron 30.0%
TTTATTATCCATGCCTTAAG+GGG - chr6_4:722700-722719 Msa0969270:CDS 30.0%
TATTGAAGTTCAAGATTCCA+AGG - chr6_4:723055-723074 Msa0969270:intron 30.0%
ATTGAAGTTCAAGATTCCAA+GGG - chr6_4:723056-723075 Msa0969270:intron 30.0%
AGATGACAATAGTCATCTTA+AGG - chr6_4:723315-723334 Msa0969270:intron 30.0%
! ACAGAGTTTGCTTCATATTA+TGG - chr6_4:723565-723584 Msa0969270:CDS 30.0%
TAGATATCTATCGTATGTCA+TGG - chr6_4:723722-723741 Msa0969270:CDS 30.0%
GCAGATTATATACCAAGTTA+AGG + chr6_4:723773-723792 None:intergenic 30.0%
!! ATCGTATGTTGACTTGTATA+TGG + chr6_4:724131-724150 None:intergenic 30.0%
!!! GTCAACATACGATTTTTAGT+TGG - chr6_4:724138-724157 Msa0969270:intron 30.0%
! TATCTGTTCAATTTTGTCCT+TGG + chr6_4:724254-724273 None:intergenic 30.0%
! ACTAATATTATCTCAGGTTG+CGG - chr6_4:724534-724553 Msa0969270:intron 30.0%
TATATTCATCTGTGTCTGAA+AGG + chr6_4:724582-724601 None:intergenic 30.0%
GAATAATGAAAGCTGTTTGA+TGG - chr6_4:724609-724628 Msa0969270:intron 30.0%
AAACACTGTGCATAAATCTT+AGG - chr6_4:724668-724687 Msa0969270:intron 30.0%
TTGAGAAAAGAAAGATACCT+AGG + chr6_4:724739-724758 None:intergenic 30.0%
GGATTTAATGTCTGGTTACA+AGG - chr6_4:721108-721127 Msa0969270:CDS 35.0%
ACAGTGATCATGACTAGATT+AGG - chr6_4:721221-721240 Msa0969270:CDS 35.0%
CAGTGATCATGACTAGATTA+GGG - chr6_4:721222-721241 Msa0969270:CDS 35.0%
GCTTCATAGGTGAAATATCT+TGG - chr6_4:721664-721683 Msa0969270:CDS 35.0%
! TGCTATGAGAATTTTCAGAG+TGG - chr6_4:721714-721733 Msa0969270:intron 35.0%
! AGAGAAATCTCTGAAAATGG+GGG + chr6_4:721780-721799 None:intergenic 35.0%
! GAGAGAAATCTCTGAAAATG+GGG + chr6_4:721781-721800 None:intergenic 35.0%
! GGAGAGAAATCTCTGAAAAT+GGG + chr6_4:721782-721801 None:intergenic 35.0%
TGATACCTTGCATGAAATGT+TGG + chr6_4:721846-721865 None:intergenic 35.0%
! TGAATTCTTTTCAGTGCTCT+TGG - chr6_4:721932-721951 Msa0969270:intron 35.0%
TATGCAATTACTGCATACCA+TGG + chr6_4:721958-721977 None:intergenic 35.0%
! TAAGGAAGCTCCAATGTTTT+TGG - chr6_4:722020-722039 Msa0969270:intron 35.0%
! AATGGAGAACTTTCTAGTGA+GGG - chr6_4:722211-722230 Msa0969270:CDS 35.0%
ATGTCACAAAAGACTCACTA+TGG + chr6_4:722330-722349 None:intergenic 35.0%
TTGACTGCAAATTTGAGAAG+TGG + chr6_4:722459-722478 None:intergenic 35.0%
TTGCAGTCAAAACTATCTTC+TGG - chr6_4:722469-722488 Msa0969270:CDS 35.0%
AGTCAAAACTATCTTCTGGT+TGG - chr6_4:722473-722492 Msa0969270:CDS 35.0%
! AAGTTGTTACGCCAACTTTT+AGG + chr6_4:722615-722634 None:intergenic 35.0%
! TTCCAACATTTTTCCCCTTA+AGG + chr6_4:722716-722735 None:intergenic 35.0%
TCTCTGATGATATACACATG+CGG + chr6_4:722840-722859 None:intergenic 35.0%
TAGTTGAAGAAGATGCCATT+AGG - chr6_4:722890-722909 Msa0969270:CDS 35.0%
TTACAACATATGGACTTCAC+TGG + chr6_4:722929-722948 None:intergenic 35.0%
! TACAGTTTTCCAGATAGTCT+TGG - chr6_4:723020-723039 Msa0969270:intron 35.0%
AAATCATCTCCAAGACTATC+TGG + chr6_4:723032-723051 None:intergenic 35.0%
!!! ATTCCAAGGGAAAGCATTTT+GGG - chr6_4:723069-723088 Msa0969270:intron 35.0%
TTAATGATCACCACTCAAAC+AGG + chr6_4:723174-723193 None:intergenic 35.0%
! GTACTTTGTCAGACTGTTTT+CGG + chr6_4:723216-723235 None:intergenic 35.0%
AGAAGTTGCAATGAAAGTTC+AGG - chr6_4:723492-723511 Msa0969270:CDS 35.0%
GAAGTTGCAATGAAAGTTCA+GGG - chr6_4:723493-723512 Msa0969270:CDS 35.0%
CAAAGGAACCTAGAATTACA+TGG - chr6_4:723523-723542 Msa0969270:CDS 35.0%
AATTACATGGTCCATGGAAA+TGG - chr6_4:723536-723555 Msa0969270:CDS 35.0%
CTATTTCCCTTCATGATAAC+AGG + chr6_4:723801-723820 None:intergenic 35.0%
!! GATATGTTGATGATACCTCT+TGG + chr6_4:723842-723861 None:intergenic 35.0%
TCTTATCAGAATCGACTACT+AGG - chr6_4:724223-724242 Msa0969270:intron 35.0%
AGCTTGTAAAGTTTAACAGC+CGG + chr6_4:724382-724401 None:intergenic 35.0%
!!! TGTTTTGATCTTCTGGTAAG+CGG + chr6_4:724653-724672 None:intergenic 35.0%
!! CACTTGCTACTGCTTCTTTT+GGG - chr6_4:721466-721485 Msa0969270:intron 40.0%
AACACGTGTCAATGACATGA+CGG - chr6_4:721537-721556 Msa0969270:CDS 40.0%
! TGGAATGTTGTCTGATGATG+AGG - chr6_4:721734-721753 Msa0969270:intron 40.0%
! GGGAGAGAAATCTCTGAAAA+TGG + chr6_4:721783-721802 None:intergenic 40.0%
ACCTTGCATGAAATGTTGGA+AGG + chr6_4:721842-721861 None:intergenic 40.0%
TACACTTACACTGCTTGTGA+AGG + chr6_4:722002-722021 None:intergenic 40.0%
TCACAAGCAGTGTAAGTGTA+AGG - chr6_4:722002-722021 Msa0969270:intron 40.0%
GAGCTAATGGTGAAATGCAA+TGG - chr6_4:722193-722212 Msa0969270:CDS 40.0%
! CAATGGAGAACTTTCTAGTG+AGG - chr6_4:722210-722229 Msa0969270:CDS 40.0%
CGCTATATACAACAAGTCTC+TGG - chr6_4:722586-722605 Msa0969270:intron 40.0%
AAGTTGGCGTAACAACTTTG+CGG - chr6_4:722617-722636 Msa0969270:intron 40.0%
! ACATTTTTCCCCTTAAGGCA+TGG + chr6_4:722711-722730 None:intergenic 40.0%
TGCCTTAAGGGGAAAAATGT+TGG - chr6_4:722711-722730 Msa0969270:CDS 40.0%
!!! GATTCCAAGGGAAAGCATTT+TGG - chr6_4:723068-723087 Msa0969270:intron 40.0%
GGCTGCTATAGCTGATAATT+CGG - chr6_4:723109-723128 Msa0969270:intron 40.0%
GTTATTAGTGCCTGTTTGAG+TGG - chr6_4:723161-723180 Msa0969270:intron 40.0%
ATGACTATTGTCATCTGCAC+TGG + chr6_4:723311-723330 None:intergenic 40.0%
!! TCATTGCAACTTCTAGAACC+AGG + chr6_4:723486-723505 None:intergenic 40.0%
ACCTAGAATTACATGGTCCA+TGG - chr6_4:723530-723549 Msa0969270:CDS 40.0%
TCCATGGACCATGTAATTCT+AGG + chr6_4:723534-723553 None:intergenic 40.0%
CTGAGATATATACGAAGCTG+AGG - chr6_4:723593-723612 Msa0969270:intron 40.0%
AAGTTAAGGCAATCTGCTGT+TGG + chr6_4:723759-723778 None:intergenic 40.0%
AACAGCAGATTGCCTTAACT+TGG - chr6_4:723758-723777 Msa0969270:CDS 40.0%
CTTGCACCTGTTATCATGAA+GGG - chr6_4:723792-723811 Msa0969270:intron 40.0%
!! ATGTTGATGATACCTCTTGG+TGG + chr6_4:723839-723858 None:intergenic 40.0%
TATTTGAGCACGTCAACTTG+TGG - chr6_4:723963-723982 Msa0969270:intron 40.0%
CTTGATGAGTCATCTTTCTC+TGG - chr6_4:724304-724323 Msa0969270:intron 40.0%
ATCTTTCTCTGGTATCGTTG+AGG - chr6_4:724315-724334 Msa0969270:intron 40.0%
TCACGATATCTTATCTCCTG+AGG - chr6_4:724405-724424 Msa0969270:intron 40.0%
!!! TGCACAGTGTTTTGATCTTC+TGG + chr6_4:724660-724679 None:intergenic 40.0%
!! GCACTTGCTACTGCTTCTTT+TGG - chr6_4:721465-721484 Msa0969270:intron 45.0%
ACTATGTAGCACGGACACTT+CGG - chr6_4:721499-721518 Msa0969270:CDS 45.0%
GTCATGTCATTGACACGTGT+TGG + chr6_4:721538-721557 None:intergenic 45.0%
TTTCAGAGATTTCTCTCCCG+AGG - chr6_4:721784-721803 Msa0969270:intron 45.0%
ACTAATCTCCTCCTCTTCCT+CGG + chr6_4:721804-721823 None:intergenic 45.0%
GGAAGAGGAGGAGATTAGTA+AGG - chr6_4:721805-721824 Msa0969270:intron 45.0%
GCCTTCCAACATTTCATGCA+AGG - chr6_4:721838-721857 Msa0969270:intron 45.0%
AGTGCTTCTTCAACCAGAAG+AGG - chr6_4:722171-722190 Msa0969270:CDS 45.0%
TCAACCAGAAGAGGAGCTAA+TGG - chr6_4:722180-722199 Msa0969270:CDS 45.0%
TTCACCATTAGCTCCTCTTC+TGG + chr6_4:722187-722206 None:intergenic 45.0%
! ATTGGCAAGATGAAGGTGCA+AGG - chr6_4:722259-722278 Msa0969270:intron 45.0%
TGCAGTACGCAAAGTCAAAG+TGG - chr6_4:722360-722379 Msa0969270:CDS 45.0%
GCAGTACGCAAAGTCAAAGT+GGG - chr6_4:722361-722380 Msa0969270:CDS 45.0%
CAGTACGCAAAGTCAAAGTG+GGG - chr6_4:722362-722381 Msa0969270:CDS 45.0%
AGTACGCAAAGTCAAAGTGG+GGG - chr6_4:722363-722382 Msa0969270:CDS 45.0%
GTACCACATTTGCCTGCAAA+TGG - chr6_4:722520-722539 Msa0969270:intron 45.0%
GAACCATTTGCAGGCAAATG+TGG + chr6_4:722526-722545 None:intergenic 45.0%
TTCCCTGACACATAAAAGCC+TGG - chr6_4:722543-722562 Msa0969270:intron 45.0%
! TGCCAGGCTTTTATGTGTCA+GGG + chr6_4:722548-722567 None:intergenic 45.0%
! ATGCCAGGCTTTTATGTGTC+AGG + chr6_4:722549-722568 None:intergenic 45.0%
GTCTCTGGACTCCTAAAAGT+TGG - chr6_4:722601-722620 Msa0969270:intron 45.0%
TTACGAAGCTGTGCAAGGTA+TGG - chr6_4:722654-722673 Msa0969270:CDS 45.0%
TACGAAGCTGTGCAAGGTAT+GGG - chr6_4:722655-722674 Msa0969270:CDS 45.0%
ATATGGACTTCACTGGATCC+AGG + chr6_4:722922-722941 None:intergenic 45.0%
TATCAGCTATAGCAGCCACT+TGG + chr6_4:723106-723125 None:intergenic 45.0%
AACAGTCTGACAAAGTACGC+TGG - chr6_4:723218-723237 Msa0969270:intron 45.0%
GTATCTTGCCAACAAGCTCA+TGG + chr6_4:723267-723286 None:intergenic 45.0%
GGAGACAGTTGTATATGACC+TGG - chr6_4:723465-723484 Msa0969270:CDS 45.0%
AAGTTCAGGGCTTTCAGCAA+AGG - chr6_4:723506-723525 Msa0969270:CDS 45.0%
TCTGTCAAGAGCCATTTCCA+TGG + chr6_4:723550-723569 None:intergenic 45.0%
GCTTGCACCTGTTATCATGA+AGG - chr6_4:723791-723810 Msa0969270:intron 45.0%
AACTTCTTTGAGCCACCAAG+AGG - chr6_4:723824-723843 Msa0969270:intron 45.0%
GACTTGTATATGGCTACGCT+TGG + chr6_4:724121-724140 None:intergenic 45.0%
! TTAACAGCCGGTTCCAAAAC+AGG + chr6_4:724370-724389 None:intergenic 45.0%
!! GTAGCGACAGAAACTGGTTT+TGG + chr6_4:724431-724450 None:intergenic 45.0%
GAACTCAAGTTTCTCCAACC+TGG + chr6_4:724456-724475 None:intergenic 45.0%
! TCAGGTTGCGGCAAAAAAGA+GGG - chr6_4:724546-724565 Msa0969270:intron 45.0%
TAAGCGGTAGACATGGTCAA+AGG + chr6_4:724637-724656 None:intergenic 45.0%
CTATGTAGCACGGACACTTC+GGG - chr6_4:721500-721519 Msa0969270:CDS 50.0%
!! TGACATGACGGACACTCACA+CGG - chr6_4:721549-721568 Msa0969270:CDS 50.0%
GTAAGTGTCTGTGCTGTGTC+CGG - chr6_4:721623-721642 Msa0969270:CDS 50.0%
CGTCTGTGTTCGTGCTTCAT+AGG - chr6_4:721651-721670 Msa0969270:CDS 50.0%
! TCTGAAAATGGGGGTGCACT+CGG + chr6_4:721771-721790 None:intergenic 50.0%
AGATTTCTCTCCCGAGGAAG+AGG - chr6_4:721790-721809 Msa0969270:intron 50.0%
CTAATCTCCTCCTCTTCCTC+GGG + chr6_4:721803-721822 None:intergenic 50.0%
! CTTTTCAGTGCTCTTGGCCA+TGG - chr6_4:721938-721957 Msa0969270:intron 50.0%
ACATGCTACAGCCAGTAGGA+GGG + chr6_4:722393-722412 None:intergenic 50.0%
GATGACATGCTACAGCCAGT+AGG + chr6_4:722397-722416 None:intergenic 50.0%
GGCACGCTCTTAGGAAAGTT+CGG - chr6_4:722494-722513 Msa0969270:intron 50.0%
TGTGTCAGGGAACCATTTGC+AGG + chr6_4:722535-722554 None:intergenic 50.0%
TGCTAGCATGCACATATGCC+AGG + chr6_4:722564-722583 None:intergenic 50.0%
TCCTCTTACGAAGCTGTGCA+AGG - chr6_4:722649-722668 Msa0969270:CDS 50.0%
ACCTTGCACAGCTTCGTAAG+AGG + chr6_4:722653-722672 None:intergenic 50.0%
ACGCCCAAAATGCTTTCCCT+TGG + chr6_4:723075-723094 None:intergenic 50.0%
AGTCTGACAAAGTACGCTGG+TGG - chr6_4:723221-723240 Msa0969270:intron 50.0%
TTGCCAACAAGCTCATGGTC+TGG + chr6_4:723262-723281 None:intergenic 50.0%
CTGTCTTTGTGGTTGCAGTG+TGG - chr6_4:723433-723452 Msa0969270:intron 50.0%
! GTTGCAGTGTGGTTCTGTAG+CGG - chr6_4:723444-723463 Msa0969270:CDS 50.0%
AAGGCAATCTGCTGTTGGTG+TGG + chr6_4:723754-723773 None:intergenic 50.0%
TCGACTACTAGGAGAGACCA+AGG - chr6_4:724234-724253 Msa0969270:intron 50.0%
CAAAACAGGAGCTGCATGAC+TGG + chr6_4:724356-724375 None:intergenic 50.0%
! CAGTCATGCAGCTCCTGTTT+TGG - chr6_4:724354-724373 Msa0969270:intron 50.0%
!!! TGCAGCTCCTGTTTTGGAAC+CGG - chr6_4:724360-724379 Msa0969270:intron 50.0%
!!! CAGAAACTGGTTTTGGCCTC+AGG + chr6_4:724424-724443 None:intergenic 50.0%
CTGGAAGTAGCGACAGAAAC+TGG + chr6_4:724437-724456 None:intergenic 50.0%
CAGTTTCTGTCGCTACTTCC+AGG - chr6_4:724435-724454 Msa0969270:intron 50.0%
TTCTGTCGCTACTTCCAGGT+TGG - chr6_4:724439-724458 Msa0969270:intron 50.0%
! CTCAGGTTGCGGCAAAAAAG+AGG - chr6_4:724545-724564 Msa0969270:intron 50.0%
CGGCAAAAAAGAGGGCTAGA+AGG - chr6_4:724554-724573 Msa0969270:intron 50.0%
CTTCTGGTAAGCGGTAGACA+TGG + chr6_4:724644-724663 None:intergenic 50.0%
CACGAACACAGACGCGATAC+CGG + chr6_4:721645-721664 None:intergenic 55.0%
TTTCTCTCCCGAGGAAGAGG+AGG - chr6_4:721793-721812 Msa0969270:intron 55.0%
GACATGCTACAGCCAGTAGG+AGG + chr6_4:722394-722413 None:intergenic 55.0%
! CTTCTGGTTGGCACGCTCTT+AGG - chr6_4:722485-722504 Msa0969270:CDS 55.0%
! GATGCCATTAGGTTGCAGCC+TGG - chr6_4:722901-722920 Msa0969270:CDS 55.0%
GGATCCAGGCTGCAACCTAA+TGG + chr6_4:722908-722927 None:intergenic 55.0%
TGGGCGTGTTCTTGTCCAAG+TGG - chr6_4:723088-723107 Msa0969270:intron 55.0%
GAGCCAGACCATGAGCTTGT+TGG - chr6_4:723256-723275 Msa0969270:intron 55.0%
!! GCACGGACACTTCGGGTTGA+AGG - chr6_4:721507-721526 Msa0969270:CDS 60.0%
GTGAAGGCAAAGACGCGCAC+AGG + chr6_4:721986-722005 None:intergenic 60.0%
! CAAGCTCATGGTCTGGCTCG+CGG + chr6_4:723255-723274 None:intergenic 60.0%
GGAGCTGCATGACTGGATGC+TGG + chr6_4:724349-724368 None:intergenic 60.0%
GTGGGGGTCGACCCTCCTAC+TGG - chr6_4:722379-722398 Msa0969270:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 721106 724849 721106 ID=Msa0969270;Name=Msa0969270
chr6_4 mRNA 721106 724849 721106 ID=Msa0969270-mRNA-1;Parent=Msa0969270;Name=Msa0969270-mRNA-1;_AED=0.51;_eAED=0.51;_QI=0|0.11|0|0.3|0.77|0.8|10|0|455
chr6_4 exon 724826 724849 724826 ID=Msa0969270-mRNA-1:exon:387;Parent=Msa0969270-mRNA-1
chr6_4 exon 724656 724663 724656 ID=Msa0969270-mRNA-1:exon:386;Parent=Msa0969270-mRNA-1
chr6_4 exon 723675 723793 723675 ID=Msa0969270-mRNA-1:exon:385;Parent=Msa0969270-mRNA-1
chr6_4 exon 723440 723590 723440 ID=Msa0969270-mRNA-1:exon:384;Parent=Msa0969270-mRNA-1
chr6_4 exon 722825 722930 722825 ID=Msa0969270-mRNA-1:exon:383;Parent=Msa0969270-mRNA-1
chr6_4 exon 722619 722732 722619 ID=Msa0969270-mRNA-1:exon:382;Parent=Msa0969270-mRNA-1
chr6_4 exon 722341 722504 722341 ID=Msa0969270-mRNA-1:exon:381;Parent=Msa0969270-mRNA-1
chr6_4 exon 722110 722266 722110 ID=Msa0969270-mRNA-1:exon:380;Parent=Msa0969270-mRNA-1
chr6_4 exon 721499 721723 721499 ID=Msa0969270-mRNA-1:exon:379;Parent=Msa0969270-mRNA-1
chr6_4 exon 721106 721405 721106 ID=Msa0969270-mRNA-1:exon:378;Parent=Msa0969270-mRNA-1
chr6_4 CDS 724826 724849 724826 ID=Msa0969270-mRNA-1:cds;Parent=Msa0969270-mRNA-1
chr6_4 CDS 724656 724663 724656 ID=Msa0969270-mRNA-1:cds;Parent=Msa0969270-mRNA-1
chr6_4 CDS 723675 723793 723675 ID=Msa0969270-mRNA-1:cds;Parent=Msa0969270-mRNA-1
chr6_4 CDS 723440 723590 723440 ID=Msa0969270-mRNA-1:cds;Parent=Msa0969270-mRNA-1
chr6_4 CDS 722825 722930 722825 ID=Msa0969270-mRNA-1:cds;Parent=Msa0969270-mRNA-1
chr6_4 CDS 722619 722732 722619 ID=Msa0969270-mRNA-1:cds;Parent=Msa0969270-mRNA-1
chr6_4 CDS 722341 722504 722341 ID=Msa0969270-mRNA-1:cds;Parent=Msa0969270-mRNA-1
chr6_4 CDS 722110 722266 722110 ID=Msa0969270-mRNA-1:cds;Parent=Msa0969270-mRNA-1
chr6_4 CDS 721499 721723 721499 ID=Msa0969270-mRNA-1:cds;Parent=Msa0969270-mRNA-1
chr6_4 CDS 721106 721405 721106 ID=Msa0969270-mRNA-1:cds;Parent=Msa0969270-mRNA-1
Gene Sequence

>Msa0969270

ATGGATTTAATGTCTGGTTACAAGTTTAACATATTGCGACAAGTGCTTCTTCAACCAGAAGAGGAGCTAATGGTGAAATGCAATGGAGAACTTTCTAGTGAGGGTGTTGCTCCTAAACTGAAAAAACTTATTGGCAAGATGAAGGTGCAAGTACGCAAAGTCAAAGTGGGGGTCGACCCTCCTACTGGCTGTAGCATGTCATCAATAGTGACACATAAAATTAAAATGGATTCAATGCAATACCACTTCTCAAATTTGCAGTCAAAACTATCTTCTGGTTGGCACGCTCTTAGGAAAGTTCGTTTTCCAGATAGTCTTGGAGATGATTTGCATATTGAAGTTCAAGATTCCAAGGGAAAGCATTTTGGGCGTGTTCTTGTCCAAGTGGCTGCTATAGCTGATAATTCGTCTGACAAAGTACGCTGGTGGAATGTTTACCGCGAGCCAGACCATGAGCTTGTTGGCAAGATACAACTTAATATACTTTATTCAACCAGTGCAGATGACAATAGTCATCTTAAGTGTGGTTCTGTAGCGGAGACAGTTGTATATGACCTGGTTCTAGAAGTTGCAATGAAAGTTCAGGGCTTTCAGCAAAGGAACCTAGAATTACATGGTCCATGGAAATGGCTCTTGACAGAGTTTGCTTCATATTATGGCGTGTCTGAGATATATACGAAGCTGAGTTGTGTTCATAATGTTCTGCATTTCTGCTCAAATAGATATCTATCGTATGTCATGGATGTTGCCACACCAACAGCAGATTGCCTTAACTTGGTATATAATCTGCTTGCACCTGTTATCATGAAGGGAAATAGCAAAACTTCTTTGAGCCACCAAGAGAATCGACTACTAGGAGAGACCAAGGACAAAATTGAACAGATACTCACACTTACATTTGAGAATTACAAGTCTCTTGATGAGTCATCTTTCTCTGGTATCGTTGAGGTTTTCAGACCAGCATCCAGTCATGCAGCTCCTGTTTTGGAACCGGCTGTTAAACTTTACAAGCTTCTTCACGATATCTTATCTCCTGAGGCCAAAACCAGTTTCTGTCGCTACTTCCAGGTTGCGGCAAAAAAGAGGGCTAGAAGGCACCTTTCAGACACAGATGAATATATTGCACAGAATAATGAAAGCTGTTTGATGGATCCTTTGACCATGTCTACCGCTTACCAGAAGATCAAAACACTGTGCATAAATCTTAGGAATGAAATCTATTCTGATATTCAGATTCATAATCAAAATATACTTCCTAGGTATCTTTCTTTTCTCAAACATATATGGACAGCTTATGTGTTCATTATTAAGAATTCGGACAGATTAATAACATATATGGGATGTTTTGTGAACTCTGATGAAATTTAA

Protein sequence

>Msa0969270

MDLMSGYKFNILRQVLLQPEEELMVKCNGELSSEGVAPKLKKLIGKMKVQVRKVKVGVDPPTGCSMSSIVTHKIKMDSMQYHFSNLQSKLSSGWHALRKVRFPDSLGDDLHIEVQDSKGKHFGRVLVQVAAIADNSSDKVRWWNVYREPDHELVGKIQLNILYSTSADDNSHLKCGSVAETVVYDLVLEVAMKVQGFQQRNLELHGPWKWLLTEFASYYGVSEIYTKLSCVHNVLHFCSNRYLSYVMDVATPTADCLNLVYNLLAPVIMKGNSKTSLSHQENRLLGETKDKIEQILTLTFENYKSLDESSFSGIVEVFRPASSHAAPVLEPAVKLYKLLHDILSPEAKTSFCRYFQVAAKKRARRHLSDTDEYIAQNNESCLMDPLTMSTAYQKIKTLCINLRNEIYSDIQIHNQNILPRYLSFLKHIWTAYVFIIKNSDRLITYMGCFVNSDEI*