AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0969670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0969670 MtrunA17_Chr5g0427251 92.835 321 11 1 102 422 526 834 0.0 619
Msa0969670 MtrunA17_Chr5g0427251 100.000 91 0 0 12 102 355 445 7.04e-53 191
Msa0969670 MtrunA17_Chr5g0448351 46.610 354 167 6 102 449 490 827 6.38e-94 307
Msa0969670 MtrunA17_Chr5g0401841 56.061 66 20 3 220 282 4 63 1.60e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0969670 AT4G24610.2 64.000 325 105 1 100 424 449 761 2.06e-143 439
Msa0969670 AT4G24610.2 55.556 81 34 1 25 103 294 374 1.69e-18 89.4
Msa0969670 AT4G24610.3 64.000 325 105 1 100 424 449 761 2.13e-143 439
Msa0969670 AT4G24610.3 55.556 81 34 1 25 103 294 374 1.70e-18 89.4
Msa0969670 AT4G24610.1 64.000 325 105 1 100 424 445 757 2.23e-143 439
Msa0969670 AT4G24610.1 55.556 81 34 1 25 103 290 370 1.72e-18 89.4
Msa0969670 AT4G24610.4 64.000 325 105 1 100 424 445 757 2.32e-143 439
Msa0969670 AT4G24610.4 55.556 81 34 1 25 103 290 370 1.75e-18 89.0
Msa0969670 AT5G65440.2 52.754 345 147 3 102 446 353 681 9.33e-123 382
Msa0969670 AT5G65440.2 47.191 89 47 0 12 100 182 270 3.78e-19 91.3
Msa0969670 AT5G65440.1 52.754 345 147 3 102 446 353 681 1.10e-122 382
Msa0969670 AT5G65440.1 47.191 89 47 0 12 100 182 270 3.76e-19 91.3
Msa0969670 AT5G65440.8 52.754 345 147 3 102 446 353 681 1.10e-122 382
Msa0969670 AT5G65440.8 47.191 89 47 0 12 100 182 270 3.76e-19 91.3
Msa0969670 AT5G65440.9 52.754 345 147 3 102 446 353 681 1.10e-122 382
Msa0969670 AT5G65440.9 47.191 89 47 0 12 100 182 270 3.76e-19 91.3
Msa0969670 AT5G65440.5 52.754 345 147 3 102 446 394 722 1.85e-122 382
Msa0969670 AT5G65440.5 47.191 89 47 0 12 100 223 311 3.45e-19 91.3
Msa0969670 AT5G65440.6 52.754 345 147 3 102 446 394 722 3.20e-122 382
Msa0969670 AT5G65440.6 47.191 89 47 0 12 100 223 311 3.86e-19 91.3
Msa0969670 AT5G65440.4 52.754 345 147 3 102 446 394 722 3.20e-122 382
Msa0969670 AT5G65440.4 47.191 89 47 0 12 100 223 311 3.86e-19 91.3
Msa0969670 AT5G65440.7 52.754 345 147 3 102 446 394 722 3.20e-122 382
Msa0969670 AT5G65440.7 47.191 89 47 0 12 100 223 311 3.86e-19 91.3
Msa0969670 AT5G65440.3 48.285 379 146 4 102 446 394 756 4.10e-116 366
Msa0969670 AT5G65440.3 47.191 89 47 0 12 100 223 311 3.63e-19 91.3
Msa0969670 AT5G48310.2 47.812 320 153 3 100 419 425 730 1.70e-92 303
Msa0969670 AT5G48310.1 47.812 320 153 3 100 419 452 757 3.13e-92 303

Find 84 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGAGTTTGCTTCATATTA+TGG 0.166810 6_4:-1124110 Msa0969670:CDS
CTTCTGGTTGGCACGCTCTT+AGG 0.188615 6_4:-1125190 Msa0969670:CDS
GATTCCAAGGGAAAGCATTT+TGG 0.208871 6_4:-1124607 Msa0969670:CDS
GGACAGATTAATAACATATA+TGG 0.248038 6_4:-1122877 Msa0969670:CDS
CTATTTCCCTTCATGATAAC+AGG 0.279831 6_4:+1123877 None:intergenic
AGTGACACATAAAATTAAAA+TGG 0.285788 6_4:-1125255 Msa0969670:CDS
TCCATGGACCATGTAATTCT+AGG 0.298952 6_4:+1124144 None:intergenic
CAGTCATGCAGCTCCTGTTT+TGG 0.307799 6_4:-1123321 Msa0969670:CDS
CAGTTTCTGTCGCTACTTCC+AGG 0.309945 6_4:-1123240 Msa0969670:intron
AAACACTGTGCATAAATCTT+AGG 0.314150 6_4:-1123007 Msa0969670:CDS
TTCACCATTAGCTCCTCTTC+TGG 0.318680 6_4:+1125491 None:intergenic
TGTGTTCATTATTAAGAATT+CGG 0.324071 6_4:-1122898 Msa0969670:CDS
AGAAGTTGCAATGAAAGTTC+AGG 0.359320 6_4:-1124183 Msa0969670:CDS
TTAACAGCCGGTTCCAAAAC+AGG 0.371139 6_4:+1123308 None:intergenic
AAATCATCTCCAAGACTATC+TGG 0.373542 6_4:+1124646 None:intergenic
ATGAAAATGGATTTAATGTC+TGG 0.381784 6_4:-1126576 None:intergenic
TTGCAGTCAAAACTATCTTC+TGG 0.383266 6_4:-1125206 Msa0969670:CDS
GTAGCGACAGAAACTGGTTT+TGG 0.383783 6_4:+1123247 None:intergenic
CTGGAAGTAGCGACAGAAAC+TGG 0.388804 6_4:+1123241 None:intergenic
CTTGATGAGTCATCTTTCTC+TGG 0.397249 6_4:-1123371 Msa0969670:CDS
CAAAACAGGAGCTGCATGAC+TGG 0.397378 6_4:+1123322 None:intergenic
GAATAATGAAAGCTGTTTGA+TGG 0.399448 6_4:-1123066 Msa0969670:CDS
GGCTGCTATAGCTGATAATT+CGG 0.409953 6_4:-1124566 Msa0969670:intron
GGCACGCTCTTAGGAAAGTT+CGG 0.428629 6_4:-1125181 Msa0969670:intron
AATTACATGGTCCATGGAAA+TGG 0.428646 6_4:-1124139 Msa0969670:CDS
GGATTTAATGTCTGGTTACA+AGG 0.443940 6_4:-1126568 Msa0969670:intron
GAGCCAGACCATGAGCTTGT+TGG 0.456837 6_4:-1124419 Msa0969670:CDS
AACAGCAGATTGCCTTAACT+TGG 0.461204 6_4:-1123917 Msa0969670:CDS
GCAGATTATATACCAAGTTA+AGG 0.465872 6_4:+1123905 None:intergenic
AGATGACAATAGTCATCTTA+AGG 0.472987 6_4:-1124360 Msa0969670:intron
GACAGATTAATAACATATAT+GGG 0.473519 6_4:-1122876 Msa0969670:CDS
ATAATCAAAATATACTTCCT+AGG 0.479944 6_4:-1122956 Msa0969670:CDS
TCTTATCAGAATCGACTACT+AGG 0.490024 6_4:-1123452 Msa0969670:intron
GAAGTTGCAATGAAAGTTCA+GGG 0.494648 6_4:-1124182 Msa0969670:CDS
ACGCCCAAAATGCTTTCCCT+TGG 0.498791 6_4:+1124603 None:intergenic
TCAACCAGAAGAGGAGCTAA+TGG 0.506702 6_4:-1125495 Msa0969670:CDS
TTGCCAACAAGCTCATGGTC+TGG 0.507971 6_4:+1124416 None:intergenic
TATTGAAGTTCAAGATTCCA+AGG 0.517716 6_4:-1124620 Msa0969670:CDS
GCAGTACGCAAAGTCAAAGT+GGG 0.519161 6_4:-1125314 Msa0969670:intron
TTGACTGCAAATTTGAGAAG+TGG 0.525517 6_4:+1125219 None:intergenic
AAAACTTATTGGCAAGATGA+AGG 0.526439 6_4:-1125423 Msa0969670:CDS
GCTTGCACCTGTTATCATGA+AGG 0.534068 6_4:-1123884 Msa0969670:CDS
AGCTTGTAAAGTTTAACAGC+CGG 0.536736 6_4:+1123296 None:intergenic
ACCTAGAATTACATGGTCCA+TGG 0.537176 6_4:-1124145 Msa0969670:CDS
AAGTTCAGGGCTTTCAGCAA+AGG 0.539878 6_4:-1124169 Msa0969670:CDS
ATCTTTCTCTGGTATCGTTG+AGG 0.540922 6_4:-1123360 Msa0969670:CDS
ATGACTATTGTCATCTGCAC+TGG 0.548196 6_4:+1124367 None:intergenic
TAGATATCTATCGTATGTCA+TGG 0.550386 6_4:-1123953 Msa0969670:CDS
TATATTCATCTGTGTCTGAA+AGG 0.552223 6_4:+1123096 None:intergenic
GACATGCTACAGCCAGTAGG+AGG 0.562749 6_4:+1125284 None:intergenic
CTTGCACCTGTTATCATGAA+GGG 0.565811 6_4:-1123883 Msa0969670:CDS
GAGCTAATGGTGAAATGCAA+TGG 0.566880 6_4:-1125482 Msa0969670:CDS
GTATCTTGCCAACAAGCTCA+TGG 0.570307 6_4:+1124411 None:intergenic
GGAGCTGCATGACTGGATGC+TGG 0.571659 6_4:+1123329 None:intergenic
CAAAGGAACCTAGAATTACA+TGG 0.575331 6_4:-1124152 Msa0969670:CDS
TATCAGCTATAGCAGCCACT+TGG 0.577953 6_4:+1124572 None:intergenic
TCTGTCAAGAGCCATTTCCA+TGG 0.578372 6_4:+1124128 None:intergenic
TGCAGTACGCAAAGTCAAAG+TGG 0.581751 6_4:-1125315 Msa0969670:intron
AGTCAAAACTATCTTCTGGT+TGG 0.585669 6_4:-1125202 Msa0969670:CDS
AGTGCTTCTTCAACCAGAAG+AGG 0.591826 6_4:-1125504 Msa0969670:CDS
AAGTTAAGGCAATCTGCTGT+TGG 0.596013 6_4:+1123919 None:intergenic
TTGAGAAAAGAAAGATACCT+AGG 0.596109 6_4:+1122939 None:intergenic
CAATGGAGAACTTTCTAGTG+AGG 0.596450 6_4:-1125465 Msa0969670:CDS
TCATTGCAACTTCTAGAACC+AGG 0.599580 6_4:+1124192 None:intergenic
CTTCTGGTAAGCGGTAGACA+TGG 0.600601 6_4:+1123034 None:intergenic
CAGTACGCAAAGTCAAAGTG+GGG 0.626243 6_4:-1125313 Msa0969670:CDS
ATTGAAGTTCAAGATTCCAA+GGG 0.630054 6_4:-1124619 Msa0969670:CDS
AATGGAGAACTTTCTAGTGA+GGG 0.631445 6_4:-1125464 Msa0969670:CDS
AACTTCTTTGAGCCACCAAG+AGG 0.633554 6_4:-1123851 Msa0969670:intron
ATGTTGATGATACCTCTTGG+TGG 0.638496 6_4:+1123839 None:intergenic
CTGAGATATATACGAAGCTG+AGG 0.640658 6_4:-1124082 Msa0969670:intron
CAAGCTCATGGTCTGGCTCG+CGG 0.647022 6_4:+1124423 None:intergenic
TCGACTACTAGGAGAGACCA+AGG 0.647615 6_4:-1123441 Msa0969670:CDS
AGTCTGACAAAGTACGCTGG+TGG 0.654966 6_4:-1124454 Msa0969670:CDS
TAAGCGGTAGACATGGTCAA+AGG 0.655113 6_4:+1123041 None:intergenic
ATTGGCAAGATGAAGGTGCA+AGG 0.662707 6_4:-1125416 Msa0969670:intron
AAGGCAATCTGCTGTTGGTG+TGG 0.664226 6_4:+1123924 None:intergenic
GATGACATGCTACAGCCAGT+AGG 0.673386 6_4:+1125281 None:intergenic
TGGGCGTGTTCTTGTCCAAG+TGG 0.675367 6_4:-1124587 Msa0969670:CDS
ACATGCTACAGCCAGTAGGA+GGG 0.676190 6_4:+1125285 None:intergenic
GGAGACAGTTGTATATGACC+TGG 0.679123 6_4:-1124210 Msa0969670:CDS
AACAGTCTGACAAAGTACGC+TGG 0.679236 6_4:-1124457 Msa0969670:intron
GTTGCAGTGTGGTTCTGTAG+CGG 0.681208 6_4:-1124231 Msa0969670:intron
AGTACGCAAAGTCAAAGTGG+GGG 0.736804 6_4:-1125312 Msa0969670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTACTATTTACTAAT+TGG - chr6_4:1126230-1126249 Msa0969670:intron 10.0%
!!! ACAAAATTTTCTCAATTTTT+TGG - chr6_4:1123177-1123196 Msa0969670:intron 15.0%
!! TATATTATCATATATGCTTA+TGG + chr6_4:1123648-1123667 None:intergenic 15.0%
!! AACTTATACAAATGAAAAAT+GGG + chr6_4:1124533-1124552 None:intergenic 15.0%
!! AAACTTATACAAATGAAAAA+TGG + chr6_4:1124534-1124553 None:intergenic 15.0%
!! ATAAAATAACTTACAACATA+TGG + chr6_4:1124682-1124701 None:intergenic 15.0%
!! AATAAATTAAATATTTCAGC+AGG + chr6_4:1125386-1125405 None:intergenic 15.0%
!!! ATTTTTTGTCTTATCTAATA+CGG - chr6_4:1125930-1125949 Msa0969670:intron 15.0%
!! AATTATTGAAGAGAGTAATT+AGG + chr6_4:1122888-1122907 None:intergenic 20.0%
!!! TTAATCATTGTTTTTGAAAG+AGG - chr6_4:1123108-1123127 Msa0969670:CDS 20.0%
!! AGTGACACATAAAATTAAAA+TGG - chr6_4:1124163-1124182 Msa0969670:CDS 20.0%
!!! ATGTATTATACATTTGCTAT+AGG - chr6_4:1125109-1125128 Msa0969670:intron 20.0%
!! AGACAGTAAAATGATATATT+AGG + chr6_4:1125162-1125181 None:intergenic 20.0%
!! AAACTTTGTCTAAATTATTG+TGG - chr6_4:1125406-1125425 Msa0969670:intron 20.0%
!!! TTTTGTTTTAAGATCAACTA+TGG - chr6_4:1125666-1125685 Msa0969670:intron 20.0%
!!! TTTGTTTTAAGATCAACTAT+GGG - chr6_4:1125667-1125686 Msa0969670:intron 20.0%
!! TCAAATAAATCAATTCAAAC+AGG + chr6_4:1125693-1125712 None:intergenic 20.0%
!! TTAACAACTAATATTATCTC+AGG - chr6_4:1126271-1126290 Msa0969670:intron 20.0%
!! ATAATCAAAATATACTTCCT+AGG - chr6_4:1126462-1126481 Msa0969670:intron 20.0%
!!! TTTCTTTTCTCAAACATATA+TGG - chr6_4:1126489-1126508 Msa0969670:intron 20.0%
!! TGTGTTCATTATTAAGAATT+CGG - chr6_4:1126520-1126539 Msa0969670:intron 20.0%
!! GACAGATTAATAACATATAT+GGG - chr6_4:1126542-1126561 Msa0969670:intron 20.0%
! TCAATGATCATTACTAGATT+AGG - chr6_4:1123081-1123100 Msa0969670:CDS 25.0%
! CAATGATCATTACTAGATTA+GGG - chr6_4:1123082-1123101 Msa0969670:CDS 25.0%
! TATTTGAATGTAACTACATG+TGG + chr6_4:1123319-1123338 None:intergenic 25.0%
! AGATTAGTAAGGAAAATCAA+TGG - chr6_4:1123558-1123577 Msa0969670:intron 25.0%
!! CATTCATTTTCCAAAAACAT+TGG + chr6_4:1123776-1123795 None:intergenic 25.0%
! TAAATTACATCAACACTTGA+AGG + chr6_4:1123868-1123887 None:intergenic 25.0%
!!! CCAATAAGTTTTTTCAGTTT+AGG + chr6_4:1123987-1124006 None:intergenic 25.0%
! CCTAAACTGAAAAAACTTAT+TGG - chr6_4:1123984-1124003 Msa0969670:CDS 25.0%
!! TTTTTATTATCCATGCCTTA+AGG - chr6_4:1124441-1124460 Msa0969670:CDS 25.0%
!! TTTTATTATCCATGCCTTAA+GGG - chr6_4:1124442-1124461 Msa0969670:CDS 25.0%
! AATATAATTCACCATTATGC+TGG - chr6_4:1124715-1124734 Msa0969670:intron 25.0%
! AATATATTCAACCAGCATAA+TGG + chr6_4:1124729-1124748 None:intergenic 25.0%
!! ATATCATTTTACTGTCTTTG+TGG - chr6_4:1125165-1125184 Msa0969670:intron 25.0%
! GGATAAACAGTTTAATTAAG+TGG + chr6_4:1125843-1125862 None:intergenic 25.0%
! GGACAGATTAATAACATATA+TGG - chr6_4:1126541-1126560 Msa0969670:intron 25.0%
GAATGAAATACTATGTAGCA+CGG - chr6_4:1123232-1123251 Msa0969670:intron 30.0%
TCACTTTCACACATTGTTAT+TGG - chr6_4:1123341-1123360 Msa0969670:CDS 30.0%
ATAGCACAAATCACAAAGTT+AGG + chr6_4:1123442-1123461 None:intergenic 30.0%
TCTTTACTAAGAGATGCATT+TGG - chr6_4:1123797-1123816 Msa0969670:intron 30.0%
CTTTACTAAGAGATGCATTT+GGG - chr6_4:1123798-1123817 Msa0969670:intron 30.0%
AAAACTTATTGGCAAGATGA+AGG - chr6_4:1123995-1124014 Msa0969670:intron 30.0%
TTTATTATCCATGCCTTAAG+GGG - chr6_4:1124443-1124462 Msa0969670:CDS 30.0%
TATTGAAGTTCAAGATTCCA+AGG - chr6_4:1124798-1124817 Msa0969670:intron 30.0%
ATTGAAGTTCAAGATTCCAA+GGG - chr6_4:1124799-1124818 Msa0969670:intron 30.0%
AGATGACAATAGTCATCTTA+AGG - chr6_4:1125058-1125077 Msa0969670:intron 30.0%
! ACAGAGTTTGCTTCATATTA+TGG - chr6_4:1125308-1125327 Msa0969670:CDS 30.0%
TAGATATCTATCGTATGTCA+TGG - chr6_4:1125465-1125484 Msa0969670:CDS 30.0%
GCAGATTATATACCAAGTTA+AGG + chr6_4:1125516-1125535 None:intergenic 30.0%
!! ATCGTATGTTGACTTGTATA+TGG + chr6_4:1125874-1125893 None:intergenic 30.0%
!!! GTCAACATACGATTTTTAGT+TGG - chr6_4:1125881-1125900 Msa0969670:intron 30.0%
! TATCTGTTCAATTTTGTCCT+TGG + chr6_4:1125997-1126016 None:intergenic 30.0%
! ACTAATATTATCTCAGGTTG+CGG - chr6_4:1126277-1126296 Msa0969670:intron 30.0%
TATATTCATCTGTGTCTGAA+AGG + chr6_4:1126325-1126344 None:intergenic 30.0%
GAATAATGAAAGCTGTTTGA+TGG - chr6_4:1126352-1126371 Msa0969670:intron 30.0%
AAACACTGTGCATAAATCTT+AGG - chr6_4:1126411-1126430 Msa0969670:intron 30.0%
TTGAGAAAAGAAAGATACCT+AGG + chr6_4:1126482-1126501 None:intergenic 30.0%
GGATTTAATGTCTGGTTACA+AGG - chr6_4:1122850-1122869 Msa0969670:CDS 35.0%
ACAGTGATCATGACTAGATT+AGG - chr6_4:1122963-1122982 Msa0969670:CDS 35.0%
CAGTGATCATGACTAGATTA+GGG - chr6_4:1122964-1122983 Msa0969670:CDS 35.0%
GCTTCATAGGTGAAATATCT+TGG - chr6_4:1123406-1123425 Msa0969670:CDS 35.0%
! TGCTATGAGAATTTTCAGAG+TGG - chr6_4:1123456-1123475 Msa0969670:intron 35.0%
! AGAGAAATCTCTGAAAATGG+GGG + chr6_4:1123522-1123541 None:intergenic 35.0%
! GAGAGAAATCTCTGAAAATG+GGG + chr6_4:1123523-1123542 None:intergenic 35.0%
! GGAGAGAAATCTCTGAAAAT+GGG + chr6_4:1123524-1123543 None:intergenic 35.0%
TGATACCTTGCATGAAATGT+TGG + chr6_4:1123588-1123607 None:intergenic 35.0%
! TGAATTCTTTTCAGTGCTCT+TGG - chr6_4:1123674-1123693 Msa0969670:intron 35.0%
ATGCAATTACTGCATACCAT+GGG + chr6_4:1123700-1123719 None:intergenic 35.0%
TATGCAATTACTGCATACCA+TGG + chr6_4:1123701-1123720 None:intergenic 35.0%
! TAAGGAAGCTCCAATGTTTT+TGG - chr6_4:1123763-1123782 Msa0969670:intron 35.0%
! AATGGAGAACTTTCTAGTGA+GGG - chr6_4:1123954-1123973 Msa0969670:CDS 35.0%
ATGTCACAAAAGACTCACTA+TGG + chr6_4:1124073-1124092 None:intergenic 35.0%
TTGACTGCAAATTTGAGAAG+TGG + chr6_4:1124202-1124221 None:intergenic 35.0%
TTGCAGTCAAAACTATCTTC+TGG - chr6_4:1124212-1124231 Msa0969670:CDS 35.0%
AGTCAAAACTATCTTCTGGT+TGG - chr6_4:1124216-1124235 Msa0969670:CDS 35.0%
! AAGTTGTTACGCCAACTTTT+AGG + chr6_4:1124358-1124377 None:intergenic 35.0%
! TTCCAACATTTTTCCCCTTA+AGG + chr6_4:1124459-1124478 None:intergenic 35.0%
TCTCTGATGATATACACATG+CGG + chr6_4:1124583-1124602 None:intergenic 35.0%
TAGTTGAAGAAGATGCCATT+AGG - chr6_4:1124633-1124652 Msa0969670:CDS 35.0%
TTACAACATATGGACTTCAC+TGG + chr6_4:1124672-1124691 None:intergenic 35.0%
! TACAGTTTTCCAGATAGTCT+TGG - chr6_4:1124763-1124782 Msa0969670:intron 35.0%
AAATCATCTCCAAGACTATC+TGG + chr6_4:1124775-1124794 None:intergenic 35.0%
!!! ATTCCAAGGGAAAGCATTTT+GGG - chr6_4:1124812-1124831 Msa0969670:intron 35.0%
TTAATGATCACCACTCAAAC+AGG + chr6_4:1124917-1124936 None:intergenic 35.0%
! GTACTTTGTCAGACTGTTTT+CGG + chr6_4:1124959-1124978 None:intergenic 35.0%
AGAAGTTGCAATGAAAGTTC+AGG - chr6_4:1125235-1125254 Msa0969670:CDS 35.0%
GAAGTTGCAATGAAAGTTCA+GGG - chr6_4:1125236-1125255 Msa0969670:CDS 35.0%
CAAAGGAACCTAGAATTACA+TGG - chr6_4:1125266-1125285 Msa0969670:CDS 35.0%
AATTACATGGTCCATGGAAA+TGG - chr6_4:1125279-1125298 Msa0969670:CDS 35.0%
CTATTTCCCTTCATGATAAC+AGG + chr6_4:1125544-1125563 None:intergenic 35.0%
!! GATATGTTGATGATACCTCT+TGG + chr6_4:1125585-1125604 None:intergenic 35.0%
TCTTATCAGAATCGACTACT+AGG - chr6_4:1125966-1125985 Msa0969670:intron 35.0%
AGCTTGTAAAGTTTAACAGC+CGG + chr6_4:1126125-1126144 None:intergenic 35.0%
! TCACGATATTTTATCTCCTG+AGG - chr6_4:1126148-1126167 Msa0969670:intron 35.0%
!!! TGTTTTGATCTTCTGGTAAG+CGG + chr6_4:1126396-1126415 None:intergenic 35.0%
!! CACTTGCTACTGCTTCTTTT+GGG - chr6_4:1123208-1123227 Msa0969670:intron 40.0%
AACACGTGTCAATGACATGA+CGG - chr6_4:1123279-1123298 Msa0969670:CDS 40.0%
! TGGAATGTTGTCTGATGATG+AGG - chr6_4:1123476-1123495 Msa0969670:intron 40.0%
! GGGAGAGAAATCTCTGAAAA+TGG + chr6_4:1123525-1123544 None:intergenic 40.0%
ACCTTGCATGAAATGTTGGA+AGG + chr6_4:1123584-1123603 None:intergenic 40.0%
TACACTTACACTGCTTGTGA+AGG + chr6_4:1123745-1123764 None:intergenic 40.0%
TCACAAGCAGTGTAAGTGTA+AGG - chr6_4:1123745-1123764 Msa0969670:intron 40.0%
GAGCTAATGGTGAAATGCAA+TGG - chr6_4:1123936-1123955 Msa0969670:CDS 40.0%
! CAATGGAGAACTTTCTAGTG+AGG - chr6_4:1123953-1123972 Msa0969670:CDS 40.0%
CGCTATATACAACAAGTCTC+TGG - chr6_4:1124329-1124348 Msa0969670:intron 40.0%
AAGTTGGCGTAACAACTTTG+CGG - chr6_4:1124360-1124379 Msa0969670:intron 40.0%
! ACATTTTTCCCCTTAAGGCA+TGG + chr6_4:1124454-1124473 None:intergenic 40.0%
TGCCTTAAGGGGAAAAATGT+TGG - chr6_4:1124454-1124473 Msa0969670:CDS 40.0%
!!! GATTCCAAGGGAAAGCATTT+TGG - chr6_4:1124811-1124830 Msa0969670:intron 40.0%
GGCTGCTATAGCTGATAATT+CGG - chr6_4:1124852-1124871 Msa0969670:intron 40.0%
GTTATTAGTGCCTGTTTGAG+TGG - chr6_4:1124904-1124923 Msa0969670:intron 40.0%
ATGACTATTGTCATCTGCAC+TGG + chr6_4:1125054-1125073 None:intergenic 40.0%
!! TCATTGCAACTTCTAGAACC+AGG + chr6_4:1125229-1125248 None:intergenic 40.0%
ACCTAGAATTACATGGTCCA+TGG - chr6_4:1125273-1125292 Msa0969670:CDS 40.0%
TCCATGGACCATGTAATTCT+AGG + chr6_4:1125277-1125296 None:intergenic 40.0%
CTGAGATATATACGAAGCTG+AGG - chr6_4:1125336-1125355 Msa0969670:intron 40.0%
AAGTTAAGGCAATCTGCTGT+TGG + chr6_4:1125502-1125521 None:intergenic 40.0%
AACAGCAGATTGCCTTAACT+TGG - chr6_4:1125501-1125520 Msa0969670:CDS 40.0%
CTTGCACCTGTTATCATGAA+GGG - chr6_4:1125535-1125554 Msa0969670:intron 40.0%
!! ATGTTGATGATACCTCTTGG+TGG + chr6_4:1125582-1125601 None:intergenic 40.0%
TATTTGAGCACGTCAACTTG+TGG - chr6_4:1125706-1125725 Msa0969670:intron 40.0%
CTTGATGAGTCATCTTTCTC+TGG - chr6_4:1126047-1126066 Msa0969670:intron 40.0%
ATCTTTCTCTGGTATCGTTG+AGG - chr6_4:1126058-1126077 Msa0969670:intron 40.0%
!!! TGCACAGTGTTTTGATCTTC+TGG + chr6_4:1126403-1126422 None:intergenic 40.0%
!! GCACTTGCTACTGCTTCTTT+TGG - chr6_4:1123207-1123226 Msa0969670:intron 45.0%
ACTATGTAGCACGGACACTT+CGG - chr6_4:1123241-1123260 Msa0969670:CDS 45.0%
GTCATGTCATTGACACGTGT+TGG + chr6_4:1123280-1123299 None:intergenic 45.0%
TTTCAGAGATTTCTCTCCCG+AGG - chr6_4:1123526-1123545 Msa0969670:intron 45.0%
ACTAATCTCCTCCTCTTCCT+CGG + chr6_4:1123546-1123565 None:intergenic 45.0%
GGAAGAGGAGGAGATTAGTA+AGG - chr6_4:1123547-1123566 Msa0969670:intron 45.0%
GCCTTCCAACATTTCATGCA+AGG - chr6_4:1123580-1123599 Msa0969670:intron 45.0%
AGTGCTTCTTCAACCAGAAG+AGG - chr6_4:1123914-1123933 Msa0969670:CDS 45.0%
TCAACCAGAAGAGGAGCTAA+TGG - chr6_4:1123923-1123942 Msa0969670:CDS 45.0%
TTCACCATTAGCTCCTCTTC+TGG + chr6_4:1123930-1123949 None:intergenic 45.0%
! ATTGGCAAGATGAAGGTGCA+AGG - chr6_4:1124002-1124021 Msa0969670:intron 45.0%
TGCAGTACGCAAAGTCAAAG+TGG - chr6_4:1124103-1124122 Msa0969670:CDS 45.0%
GCAGTACGCAAAGTCAAAGT+GGG - chr6_4:1124104-1124123 Msa0969670:CDS 45.0%
CAGTACGCAAAGTCAAAGTG+GGG - chr6_4:1124105-1124124 Msa0969670:CDS 45.0%
AGTACGCAAAGTCAAAGTGG+GGG - chr6_4:1124106-1124125 Msa0969670:CDS 45.0%
GTACCACATTTGCCTGCAAA+TGG - chr6_4:1124263-1124282 Msa0969670:intron 45.0%
GAACCATTTGCAGGCAAATG+TGG + chr6_4:1124269-1124288 None:intergenic 45.0%
TTCCCTGACACATAAAAGCC+TGG - chr6_4:1124286-1124305 Msa0969670:intron 45.0%
! TGCCAGGCTTTTATGTGTCA+GGG + chr6_4:1124291-1124310 None:intergenic 45.0%
! ATGCCAGGCTTTTATGTGTC+AGG + chr6_4:1124292-1124311 None:intergenic 45.0%
GTCTCTGGACTCCTAAAAGT+TGG - chr6_4:1124344-1124363 Msa0969670:intron 45.0%
TTACGAAGCTGTGCAAGGTA+TGG - chr6_4:1124397-1124416 Msa0969670:CDS 45.0%
TACGAAGCTGTGCAAGGTAT+GGG - chr6_4:1124398-1124417 Msa0969670:CDS 45.0%
ATATGGACTTCACTGGATCC+AGG + chr6_4:1124665-1124684 None:intergenic 45.0%
TATCAGCTATAGCAGCCACT+TGG + chr6_4:1124849-1124868 None:intergenic 45.0%
AACAGTCTGACAAAGTACGC+TGG - chr6_4:1124961-1124980 Msa0969670:intron 45.0%
GTATCTTGCCAACAAGCTCA+TGG + chr6_4:1125010-1125029 None:intergenic 45.0%
GGAGACAGTTGTATATGACC+TGG - chr6_4:1125208-1125227 Msa0969670:CDS 45.0%
AAGTTCAGGGCTTTCAGCAA+AGG - chr6_4:1125249-1125268 Msa0969670:CDS 45.0%
TCTGTCAAGAGCCATTTCCA+TGG + chr6_4:1125293-1125312 None:intergenic 45.0%
GCTTGCACCTGTTATCATGA+AGG - chr6_4:1125534-1125553 Msa0969670:intron 45.0%
AACTTCTTTGAGCCACCAAG+AGG - chr6_4:1125567-1125586 Msa0969670:intron 45.0%
GACTTGTATATGGCTACGCT+TGG + chr6_4:1125864-1125883 None:intergenic 45.0%
! TTAACAGCCGGTTCCAAAAC+AGG + chr6_4:1126113-1126132 None:intergenic 45.0%
!! GTAGCGACAGAAACTGGTTT+TGG + chr6_4:1126174-1126193 None:intergenic 45.0%
GAACTCAAGTTTCTCCAACC+TGG + chr6_4:1126199-1126218 None:intergenic 45.0%
! TCAGGTTGCGGCAAAAAAGA+GGG - chr6_4:1126289-1126308 Msa0969670:intron 45.0%
TAAGCGGTAGACATGGTCAA+AGG + chr6_4:1126380-1126399 None:intergenic 45.0%
CTATGTAGCACGGACACTTC+GGG - chr6_4:1123242-1123261 Msa0969670:CDS 50.0%
!! TGACATGACGGACACTCACA+CGG - chr6_4:1123291-1123310 Msa0969670:CDS 50.0%
GTAAGTGTCTGTGCTGTGTC+CGG - chr6_4:1123365-1123384 Msa0969670:CDS 50.0%
CGTCTGTGTTCGTGCTTCAT+AGG - chr6_4:1123393-1123412 Msa0969670:CDS 50.0%
! TCTGAAAATGGGGGTGCACT+CGG + chr6_4:1123513-1123532 None:intergenic 50.0%
AGATTTCTCTCCCGAGGAAG+AGG - chr6_4:1123532-1123551 Msa0969670:intron 50.0%
CTAATCTCCTCCTCTTCCTC+GGG + chr6_4:1123545-1123564 None:intergenic 50.0%
! TTTTCAGTGCTCTTGGCCCA+TGG - chr6_4:1123681-1123700 Msa0969670:intron 50.0%
ACATGCTACAGCCAGTAGGA+GGG + chr6_4:1124136-1124155 None:intergenic 50.0%
GATGACATGCTACAGCCAGT+AGG + chr6_4:1124140-1124159 None:intergenic 50.0%
GGCACGCTCTTAGGAAAGTT+CGG - chr6_4:1124237-1124256 Msa0969670:intron 50.0%
TGTGTCAGGGAACCATTTGC+AGG + chr6_4:1124278-1124297 None:intergenic 50.0%
TGCTAGCATGCACATATGCC+AGG + chr6_4:1124307-1124326 None:intergenic 50.0%
TCCTCTTACGAAGCTGTGCA+AGG - chr6_4:1124392-1124411 Msa0969670:CDS 50.0%
ACCTTGCACAGCTTCGTAAG+AGG + chr6_4:1124396-1124415 None:intergenic 50.0%
ACGCCCAAAATGCTTTCCCT+TGG + chr6_4:1124818-1124837 None:intergenic 50.0%
AGTCTGACAAAGTACGCTGG+TGG - chr6_4:1124964-1124983 Msa0969670:intron 50.0%
TTGCCAACAAGCTCATGGTC+TGG + chr6_4:1125005-1125024 None:intergenic 50.0%
CTGTCTTTGTGGTTGCAGTG+TGG - chr6_4:1125176-1125195 Msa0969670:intron 50.0%
! GTTGCAGTGTGGTTCTGTAG+CGG - chr6_4:1125187-1125206 Msa0969670:CDS 50.0%
AAGGCAATCTGCTGTTGGTG+TGG + chr6_4:1125497-1125516 None:intergenic 50.0%
TCGACTACTAGGAGAGACCA+AGG - chr6_4:1125977-1125996 Msa0969670:intron 50.0%
CAAAACAGGAGCTGCATGAC+TGG + chr6_4:1126099-1126118 None:intergenic 50.0%
! CAGTCATGCAGCTCCTGTTT+TGG - chr6_4:1126097-1126116 Msa0969670:intron 50.0%
!!! TGCAGCTCCTGTTTTGGAAC+CGG - chr6_4:1126103-1126122 Msa0969670:intron 50.0%
!!! CAGAAACTGGTTTTGGCCTC+AGG + chr6_4:1126167-1126186 None:intergenic 50.0%
CTGGAAGTAGCGACAGAAAC+TGG + chr6_4:1126180-1126199 None:intergenic 50.0%
CAGTTTCTGTCGCTACTTCC+AGG - chr6_4:1126178-1126197 Msa0969670:intron 50.0%
TTCTGTCGCTACTTCCAGGT+TGG - chr6_4:1126182-1126201 Msa0969670:intron 50.0%
! CTCAGGTTGCGGCAAAAAAG+AGG - chr6_4:1126288-1126307 Msa0969670:intron 50.0%
CGGCAAAAAAGAGGGCTAGA+AGG - chr6_4:1126297-1126316 Msa0969670:intron 50.0%
CTTCTGGTAAGCGGTAGACA+TGG + chr6_4:1126387-1126406 None:intergenic 50.0%
CACGAACACAGACGCGATAC+CGG + chr6_4:1123387-1123406 None:intergenic 55.0%
TTTCTCTCCCGAGGAAGAGG+AGG - chr6_4:1123535-1123554 Msa0969670:intron 55.0%
GACATGCTACAGCCAGTAGG+AGG + chr6_4:1124137-1124156 None:intergenic 55.0%
! CTTCTGGTTGGCACGCTCTT+AGG - chr6_4:1124228-1124247 Msa0969670:intron 55.0%
! GATGCCATTAGGTTGCAGCC+TGG - chr6_4:1124644-1124663 Msa0969670:CDS 55.0%
GGATCCAGGCTGCAACCTAA+TGG + chr6_4:1124651-1124670 None:intergenic 55.0%
TGGGCGTGTTCTTGTCCAAG+TGG - chr6_4:1124831-1124850 Msa0969670:intron 55.0%
GAGCCAGACCATGAGCTTGT+TGG - chr6_4:1124999-1125018 Msa0969670:intron 55.0%
!! GCACGGACACTTCGGGTTGA+AGG - chr6_4:1123249-1123268 Msa0969670:CDS 60.0%
GTGAAGGCAAAGACGCGCAC+AGG + chr6_4:1123729-1123748 None:intergenic 60.0%
! CAAGCTCATGGTCTGGCTCG+CGG + chr6_4:1124998-1125017 None:intergenic 60.0%
GGAGCTGCATGACTGGATGC+TGG + chr6_4:1126092-1126111 None:intergenic 60.0%
GTGGGGGTCGACCCTCCTAC+TGG - chr6_4:1124122-1124141 Msa0969670:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 1122848 1126592 1122848 ID=Msa0969670;Name=Msa0969670
chr6_4 mRNA 1122848 1126592 1122848 ID=Msa0969670-mRNA-1;Parent=Msa0969670;Name=Msa0969670-mRNA-1;_AED=0.51;_eAED=0.51;_QI=0|0.11|0|0.3|0.77|0.8|10|0|455
chr6_4 exon 1126569 1126592 1126569 ID=Msa0969670-mRNA-1:exon:653;Parent=Msa0969670-mRNA-1
chr6_4 exon 1126399 1126406 1126399 ID=Msa0969670-mRNA-1:exon:652;Parent=Msa0969670-mRNA-1
chr6_4 exon 1125417 1125535 1125417 ID=Msa0969670-mRNA-1:exon:651;Parent=Msa0969670-mRNA-1
chr6_4 exon 1125182 1125332 1125182 ID=Msa0969670-mRNA-1:exon:650;Parent=Msa0969670-mRNA-1
chr6_4 exon 1124567 1124672 1124567 ID=Msa0969670-mRNA-1:exon:649;Parent=Msa0969670-mRNA-1
chr6_4 exon 1124361 1124474 1124361 ID=Msa0969670-mRNA-1:exon:648;Parent=Msa0969670-mRNA-1
chr6_4 exon 1124083 1124246 1124083 ID=Msa0969670-mRNA-1:exon:647;Parent=Msa0969670-mRNA-1
chr6_4 exon 1123852 1124008 1123852 ID=Msa0969670-mRNA-1:exon:646;Parent=Msa0969670-mRNA-1
chr6_4 exon 1123241 1123465 1123241 ID=Msa0969670-mRNA-1:exon:645;Parent=Msa0969670-mRNA-1
chr6_4 exon 1122848 1123147 1122848 ID=Msa0969670-mRNA-1:exon:644;Parent=Msa0969670-mRNA-1
chr6_4 CDS 1126569 1126592 1126569 ID=Msa0969670-mRNA-1:cds;Parent=Msa0969670-mRNA-1
chr6_4 CDS 1126399 1126406 1126399 ID=Msa0969670-mRNA-1:cds;Parent=Msa0969670-mRNA-1
chr6_4 CDS 1125417 1125535 1125417 ID=Msa0969670-mRNA-1:cds;Parent=Msa0969670-mRNA-1
chr6_4 CDS 1125182 1125332 1125182 ID=Msa0969670-mRNA-1:cds;Parent=Msa0969670-mRNA-1
chr6_4 CDS 1124567 1124672 1124567 ID=Msa0969670-mRNA-1:cds;Parent=Msa0969670-mRNA-1
chr6_4 CDS 1124361 1124474 1124361 ID=Msa0969670-mRNA-1:cds;Parent=Msa0969670-mRNA-1
chr6_4 CDS 1124083 1124246 1124083 ID=Msa0969670-mRNA-1:cds;Parent=Msa0969670-mRNA-1
chr6_4 CDS 1123852 1124008 1123852 ID=Msa0969670-mRNA-1:cds;Parent=Msa0969670-mRNA-1
chr6_4 CDS 1123241 1123465 1123241 ID=Msa0969670-mRNA-1:cds;Parent=Msa0969670-mRNA-1
chr6_4 CDS 1122848 1123147 1122848 ID=Msa0969670-mRNA-1:cds;Parent=Msa0969670-mRNA-1
Gene Sequence

>Msa0969670

ATGGATTTAATGTCTGGTTACAAGTTTAACATATTGCGACAAGTGCTTCTTCAACCAGAAGAGGAGCTAATGGTGAAATGCAATGGAGAACTTTCTAGTGAGGGTGTTGCTCCTAAACTGAAAAAACTTATTGGCAAGATGAAGGTGCAAGTACGCAAAGTCAAAGTGGGGGTCGACCCTCCTACTGGCTGTAGCATGTCATCAATAGTGACACATAAAATTAAAATGGATTCAATGCAATACCACTTCTCAAATTTGCAGTCAAAACTATCTTCTGGTTGGCACGCTCTTAGGAAAGTTCGTTTTCCAGATAGTCTTGGAGATGATTTGCATATTGAAGTTCAAGATTCCAAGGGAAAGCATTTTGGGCGTGTTCTTGTCCAAGTGGCTGCTATAGCTGATAATTCGTCTGACAAAGTACGCTGGTGGAATGTTTACCGCGAGCCAGACCATGAGCTTGTTGGCAAGATACAACTTAATATACTTTATTCAACCAGTGCAGATGACAATAGTCATCTTAAGTGTGGTTCTGTAGCGGAGACAGTTGTATATGACCTGGTTCTAGAAGTTGCAATGAAAGTTCAGGGCTTTCAGCAAAGGAACCTAGAATTACATGGTCCATGGAAATGGCTCTTGACAGAGTTTGCTTCATATTATGGCGTGTCTGAGATATATACGAAGCTGAGTTGTGTTCATAATGTTCTGCATTTCTGCTCAAATAGATATCTATCGTATGTCATGGATGTTGCCACACCAACAGCAGATTGCCTTAACTTGGTATATAATCTGCTTGCACCTGTTATCATGAAGGGAAATAGCAAAACTTCTTTGAGCCACCAAGAGAATCGACTACTAGGAGAGACCAAGGACAAAATTGAACAGATACTCACACTTACATTTGAGAATTACAAGTCTCTTGATGAGTCATCTTTCTCTGGTATCGTTGAGGTTTTCAGACCAGCATCCAGTCATGCAGCTCCTGTTTTGGAACCGGCTGTTAAACTTTACAAGCTTCTTCACGATATTTTATCTCCTGAGGCCAAAACCAGTTTCTGTCGCTACTTCCAGGTTGCGGCAAAAAAGAGGGCTAGAAGGCACCTTTCAGACACAGATGAATATATTGCACAGAATAATGAAAGCTGTTTGATGGATCCTTTGACCATGTCTACCGCTTACCAGAAGATCAAAACACTGTGCATAAATCTTAGGAATGAAATCTATTCTGATATTCAGATTCATAATCAAAATATACTTCCTAGGTATCTTTCTTTTCTCAAACATATATGGACAGCTTATGTGTTCATTATTAAGAATTCGGACAGATTAATAACATATATGGGATGTTTTGTGAACTCTGATGAAATTTAA

Protein sequence

>Msa0969670

MDLMSGYKFNILRQVLLQPEEELMVKCNGELSSEGVAPKLKKLIGKMKVQVRKVKVGVDPPTGCSMSSIVTHKIKMDSMQYHFSNLQSKLSSGWHALRKVRFPDSLGDDLHIEVQDSKGKHFGRVLVQVAAIADNSSDKVRWWNVYREPDHELVGKIQLNILYSTSADDNSHLKCGSVAETVVYDLVLEVAMKVQGFQQRNLELHGPWKWLLTEFASYYGVSEIYTKLSCVHNVLHFCSNRYLSYVMDVATPTADCLNLVYNLLAPVIMKGNSKTSLSHQENRLLGETKDKIEQILTLTFENYKSLDESSFSGIVEVFRPASSHAAPVLEPAVKLYKLLHDILSPEAKTSFCRYFQVAAKKRARRHLSDTDEYIAQNNESCLMDPLTMSTAYQKIKTLCINLRNEIYSDIQIHNQNILPRYLSFLKHIWTAYVFIIKNSDRLITYMGCFVNSDEI*