Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0939830 | XP_013451101.1 | 98.559 | 347 | 5 | 0 | 1 | 347 | 1 | 347 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0939830 | sp|Q8H8T0|RGP1_ORYSJ | 86.337 | 344 | 47 | 0 | 4 | 347 | 14 | 357 | 0.0 | 645 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0458100 | Msa0939830 | 0.801684 | 8.016154e-49 | -8.615850e-47 |
| Msa0572830 | Msa0939830 | 0.821735 | 3.447544e-53 | -8.615850e-47 |
| Msa0874730 | Msa0939830 | 0.840918 | 6.509793e-58 | -8.615850e-47 |
| Msa0926310 | Msa0939830 | 0.803891 | 2.807249e-49 | -8.615850e-47 |
| Msa0939830 | Msa0976380 | 0.876077 | 1.859795e-68 | -8.615850e-47 |
| Msa0939830 | Msa1226370 | 0.813748 | 2.187369e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0939830 | MtrunA17_Chr6g0455451 | 98.559 | 347 | 5 | 0 | 1 | 347 | 1 | 347 | 0.0 | 712 |
| Msa0939830 | MtrunA17_Chr7g0219951 | 90.087 | 343 | 34 | 0 | 1 | 343 | 1 | 343 | 0.0 | 662 |
| Msa0939830 | MtrunA17_Chr5g0419801 | 87.536 | 345 | 40 | 1 | 1 | 342 | 1 | 345 | 0.0 | 642 |
| Msa0939830 | MtrunA17_Chr2g0308361 | 85.673 | 342 | 49 | 0 | 2 | 343 | 4 | 345 | 0.0 | 633 |
| Msa0939830 | MtrunA17_Chr7g0249031 | 49.412 | 340 | 166 | 4 | 10 | 344 | 9 | 347 | 3.22e-125 | 363 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0939830 | AT3G02230.1 | 88.012 | 342 | 41 | 0 | 6 | 347 | 16 | 357 | 0.0 | 643 |
| Msa0939830 | AT5G15650.1 | 86.880 | 343 | 45 | 0 | 5 | 347 | 15 | 357 | 0.0 | 640 |
| Msa0939830 | AT3G08900.1 | 82.799 | 343 | 59 | 0 | 5 | 347 | 11 | 353 | 0.0 | 621 |
| Msa0939830 | AT5G50750.1 | 77.101 | 345 | 79 | 0 | 2 | 346 | 8 | 352 | 0.0 | 582 |
| Msa0939830 | AT5G16510.2 | 48.680 | 341 | 169 | 3 | 9 | 344 | 8 | 347 | 1.97e-120 | 351 |
| Msa0939830 | AT5G16510.1 | 48.680 | 341 | 169 | 3 | 9 | 344 | 8 | 347 | 1.97e-120 | 351 |
Find 101 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAAGGAACCTTGATTTCT+TGG | 0.184256 | 6_3:-11995970 | Msa0939830:CDS |
| AAATCAGCTCCTTCTCTAAA+AGG | 0.213883 | 6_3:+11994876 | None:intergenic |
| TATTCGACCTTATATCATTT+TGG | 0.216086 | 6_3:-11993053 | Msa0939830:three_prime_UTR |
| ATTGGACCAGCTATGTATTT+TGG | 0.233920 | 6_3:-11994007 | Msa0939830:CDS |
| TTGATTATGAACTTTATAAT+AGG | 0.252799 | 6_3:-11995860 | Msa0939830:CDS |
| ACACCTTCACGAAGACTAAA+AGG | 0.252865 | 6_3:+11994840 | None:intergenic |
| AATGATATTAATAAGCTTCT+TGG | 0.286010 | 6_3:-11995837 | Msa0939830:CDS |
| ACATTGTGATTCCTACTATA+AGG | 0.293463 | 6_3:-11995986 | Msa0939830:CDS |
| AAATGATAAGGTTCAAAATA+TGG | 0.294723 | 6_3:+11995936 | None:intergenic |
| TGAACAGTTGTGCATTCTTT+TGG | 0.310762 | 6_3:+11993454 | None:intergenic |
| TGCTTTGCTATGAAAGATAT+AGG | 0.314459 | 6_3:+11993564 | None:intergenic |
| TCAGCAAGTTTGTCAAAATA+AGG | 0.319018 | 6_3:+11993376 | None:intergenic |
| TCAGGTAATCTGTGATCATT+TGG | 0.321965 | 6_3:-11993611 | Msa0939830:intron |
| ATTGGAAATAATGTTCCTTT+TGG | 0.323828 | 6_3:+11994064 | None:intergenic |
| CTTCTCTAAAAGGGTCATAA+AGG | 0.328380 | 6_3:+11994886 | None:intergenic |
| GACAACTTCTAAACCAATCT+TGG | 0.341480 | 6_3:-11993289 | Msa0939830:three_prime_UTR |
| CACACTAGTGCCGATTTCTT+AGG | 0.352599 | 6_3:-11996192 | Msa0939830:five_prime_UTR |
| GACTCTGCATGTCGTTGCTT+TGG | 0.356660 | 6_3:-11995786 | Msa0939830:CDS |
| GGCTTCTTGCATTTCATTCA+AGG | 0.357909 | 6_3:-11995808 | Msa0939830:CDS |
| CTCTCCCTTTGTTGCAACAA+TGG | 0.364501 | 6_3:-11996042 | Msa0939830:exon |
| TGCCTTTGTACTCTTTCCTT+AGG | 0.366078 | 6_3:+11993524 | None:intergenic |
| TATTTGTAATTAACCAAGAT+TGG | 0.377120 | 6_3:+11993276 | None:intergenic |
| GCTTTGCTATGAAAGATATA+GGG | 0.383869 | 6_3:+11993565 | None:intergenic |
| ATGTCGTTGCTTTGGTTACA+TGG | 0.386419 | 6_3:-11995778 | Msa0939830:CDS |
| ATCTGTGATCATTTGGGACT+TGG | 0.386651 | 6_3:-11993604 | Msa0939830:CDS |
| AAGAGTACAAAGGCATATTC+TGG | 0.396965 | 6_3:-11993516 | Msa0939830:CDS |
| ATTGCTTCCAAAATGATATA+AGG | 0.402081 | 6_3:+11993046 | None:intergenic |
| GGTCACTTGGATTGAAGCTT+GGG | 0.405282 | 6_3:-11993347 | Msa0939830:CDS |
| AAAGAGAGTTTGTTTATGAA+AGG | 0.406681 | 6_3:+11996105 | None:intergenic |
| TGTGGTGTTGCCGTGAGATT+TGG | 0.416322 | 6_3:+11996272 | None:intergenic |
| CAGCTATTTCTCATGGACTT+TGG | 0.419478 | 6_3:-11994812 | Msa0939830:CDS |
| GGAGTGTGTGAAGAAATATA+AGG | 0.422112 | 6_3:+11996137 | None:intergenic |
| TGTGAAAATGCCTAAGAAAT+CGG | 0.428284 | 6_3:+11996182 | None:intergenic |
| TTAATAAGCTTCTTGGTCCT+AGG | 0.431885 | 6_3:-11995830 | Msa0939830:CDS |
| ATTGGTTTAGAAGTTGTCAT+TGG | 0.437784 | 6_3:+11993294 | None:intergenic |
| GCATTTGATCGTGATCTGAT+TGG | 0.439539 | 6_3:-11994025 | Msa0939830:CDS |
| ATGGGAGATGGTCAGCCAAT+TGG | 0.441337 | 6_3:-11993980 | Msa0939830:CDS |
| GTGAGATTTGGTAACCTTTG+TGG | 0.448364 | 6_3:+11996284 | None:intergenic |
| CAGGTAATCTGTGATCATTT+GGG | 0.450620 | 6_3:-11993610 | Msa0939830:CDS |
| GAGTGTGTGAAGAAATATAA+GGG | 0.450702 | 6_3:+11996138 | None:intergenic |
| CTTTCCTTAGGTTCACAAAT+GGG | 0.453354 | 6_3:+11993536 | None:intergenic |
| TTCTCTAAAAGGGTCATAAA+GGG | 0.457229 | 6_3:+11994887 | None:intergenic |
| CATTTGATCATTGTTCAAGA+TGG | 0.457553 | 6_3:-11995918 | Msa0939830:CDS |
| ACAATAAAGTACAATGATCT+AGG | 0.463295 | 6_3:-11993124 | Msa0939830:three_prime_UTR |
| TAGGTTGCCAATGATCCATC+TGG | 0.469656 | 6_3:-11994981 | Msa0939830:CDS |
| ACCTTGATTTCTTGGAAATG+TGG | 0.471408 | 6_3:-11995962 | Msa0939830:CDS |
| TCTTTCCTTAGGTTCACAAA+TGG | 0.471856 | 6_3:+11993535 | None:intergenic |
| TCCACATTTCCAAGAAATCA+AGG | 0.472751 | 6_3:+11995961 | None:intergenic |
| TAATAAGCTTCTTGGTCCTA+GGG | 0.473474 | 6_3:-11995829 | Msa0939830:CDS |
| AATCAGCTCCTTCTCTAAAA+GGG | 0.486120 | 6_3:+11994877 | None:intergenic |
| ATGTCAAGTTGATCTTTCAA+TGG | 0.487236 | 6_3:+11996005 | None:intergenic |
| TGAGTAGGAGCATCATAATC+TGG | 0.489281 | 6_3:+11994780 | None:intergenic |
| TGGTCACTTGGATTGAAGCT+TGG | 0.492678 | 6_3:-11993348 | Msa0939830:CDS |
| AAATCAAGGTTCCTTATAGT+AGG | 0.497648 | 6_3:+11995975 | None:intergenic |
| TTGGGACTTGGAATCAAGAC+TGG | 0.499638 | 6_3:-11993592 | Msa0939830:CDS |
| TGAACAATGATCAAATGATA+AGG | 0.500026 | 6_3:+11995924 | None:intergenic |
| TCCAATGTGTGGAATGAACT+TGG | 0.503402 | 6_3:-11994047 | Msa0939830:CDS |
| TGACAAACTTGCTGATGCTA+TGG | 0.508417 | 6_3:-11993368 | Msa0939830:CDS |
| TACAAAACAATCATCATCAA+TGG | 0.513417 | 6_3:+11995731 | None:intergenic |
| ATGTCATCATAACGTCCAAT+TGG | 0.515690 | 6_3:+11993965 | None:intergenic |
| GGAACATTATTTCCAATGTG+TGG | 0.516575 | 6_3:-11994058 | Msa0939830:CDS |
| TTGCTGATGCTATGGTCACT+TGG | 0.517499 | 6_3:-11993360 | Msa0939830:CDS |
| GGTAACTAAGACTTGTTCAA+AGG | 0.517870 | 6_3:+11996246 | None:intergenic |
| GTGGGCTGGCTGGTGCTGCA+AGG | 0.521238 | 6_3:-11993942 | Msa0939830:intron |
| TAAGAAATCGGCACTAGTGT+GGG | 0.526043 | 6_3:+11996194 | None:intergenic |
| TGAAGCCATTGTTGCAACAA+AGG | 0.529664 | 6_3:+11996037 | None:intergenic |
| GCCAAGTTCATTCCACACAT+TGG | 0.530763 | 6_3:+11994046 | None:intergenic |
| GTAACCCATTTGTGAACCTA+AGG | 0.533378 | 6_3:-11993540 | Msa0939830:CDS |
| AGAGGTTTGACAAGCTGAGT+AGG | 0.536574 | 6_3:+11994765 | None:intergenic |
| CTAAGAAATCGGCACTAGTG+TGG | 0.539501 | 6_3:+11996193 | None:intergenic |
| GAAGCCATTGTTGCAACAAA+GGG | 0.542855 | 6_3:+11996038 | None:intergenic |
| ATGATGACATGTGGGCTGGC+TGG | 0.546299 | 6_3:-11993952 | Msa0939830:CDS |
| GTGCCAACAGCTATTTCTCA+TGG | 0.550220 | 6_3:-11994819 | Msa0939830:CDS |
| TACCTAGTGTTCCTCTCAAG+AGG | 0.553601 | 6_3:+11994747 | None:intergenic |
| ACTGTTCTGACCATACCAAA+AGG | 0.554365 | 6_3:-11994079 | Msa0939830:CDS |
| GTGTTGATGTATAAGGTATG+TGG | 0.557988 | 6_3:-11994104 | Msa0939830:intron |
| AATGAAATGCAAGAAGCCCT+AGG | 0.561699 | 6_3:+11995813 | None:intergenic |
| ATGAGACCAAAATACATAGC+TGG | 0.563502 | 6_3:+11994001 | None:intergenic |
| GTACAAAGGCATATTCTGGC+AGG | 0.565304 | 6_3:-11993512 | Msa0939830:CDS |
| CACCTTCACGAAGACTAAAA+GGG | 0.568809 | 6_3:+11994841 | None:intergenic |
| AAAACTATTAAGGTTCCACC+TGG | 0.576460 | 6_3:-11995885 | Msa0939830:CDS |
| TGAAATGTCCAAACAAGTCA+AGG | 0.580634 | 6_3:-11993419 | Msa0939830:CDS |
| CGTTATGATGACATGTGGGC+TGG | 0.587127 | 6_3:-11993956 | Msa0939830:CDS |
| TTGATTTCTTGGAAATGTGG+AGG | 0.588191 | 6_3:-11995959 | Msa0939830:CDS |
| TCAAGTTGATCTTTCAATGG+AGG | 0.604132 | 6_3:+11996008 | None:intergenic |
| GATTTGGTAACCTTTGTGGA+TGG | 0.611859 | 6_3:+11996288 | None:intergenic |
| AGTCCATGAGAAATAGCTGT+TGG | 0.615330 | 6_3:+11994816 | None:intergenic |
| TGCTATGAAAGATATAGGGA+AGG | 0.629150 | 6_3:+11993569 | None:intergenic |
| ACAAAGGTTACCAAATCTCA+CGG | 0.635679 | 6_3:-11996282 | Msa0939830:five_prime_UTR |
| AGCTTGTCAAACCTCTTGAG+AGG | 0.639514 | 6_3:-11994758 | Msa0939830:CDS |
| AACCTCTTGAGAGGAACACT+AGG | 0.659485 | 6_3:-11994749 | Msa0939830:intron |
| AAGAAATCGGCACTAGTGTG+GGG | 0.663009 | 6_3:+11996195 | None:intergenic |
| TAAAGTTCATAATCAAAACC+AGG | 0.671327 | 6_3:+11995867 | None:intergenic |
| TTGGACGTTATGATGACATG+TGG | 0.675841 | 6_3:-11993961 | Msa0939830:CDS |
| TCTCTCTCTTCCATCCACAA+AGG | 0.677091 | 6_3:-11996298 | None:intergenic |
| AGTGTGTGAAGAAATATAAG+GGG | 0.678455 | 6_3:+11996139 | None:intergenic |
| GTGTGTGAAGAAATATAAGG+GGG | 0.680344 | 6_3:+11996140 | None:intergenic |
| AGACTTGTTCAAAGGTTGTG+TGG | 0.686096 | 6_3:+11996254 | None:intergenic |
| AGTTCATAATCAAAACCAGG+TGG | 0.695438 | 6_3:+11995870 | None:intergenic |
| TGGACGTTATGATGACATGT+GGG | 0.701478 | 6_3:-11993960 | Msa0939830:CDS |
| AACCTAAGGAAAGAGTACAA+AGG | 0.702444 | 6_3:-11993526 | Msa0939830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAGAAAGAAAAAAAA+AGG | + | chr6_3:11993630-11993649 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTCTTTCTTTATT+TGG | - | chr6_3:11993629-11993648 | Msa0939830:intron | 10.0% |
| !! | TATTAAAAAAAATACAATGT+TGG | - | chr6_3:11995137-11995156 | Msa0939830:intron | 10.0% |
| !! | AAAAATTAAAAATAATGCAA+AGG | + | chr6_3:11995411-11995430 | None:intergenic | 10.0% |
| !! | TTGATTATGAACTTTATAAT+AGG | - | chr6_3:11993456-11993475 | Msa0939830:CDS | 15.0% |
| !! | TGTAACTTATATAATTGTAT+TGG | - | chr6_3:11993946-11993965 | Msa0939830:CDS | 15.0% |
| !! | ATAGTAAATTAAAACAAACA+AGG | + | chr6_3:11993994-11994013 | None:intergenic | 15.0% |
| !! | ATTGTATAAAACAATTTACA+TGG | - | chr6_3:11994865-11994884 | Msa0939830:CDS | 15.0% |
| !!! | TACAATTCAAATTTAAAGTT+TGG | - | chr6_3:11994969-11994988 | Msa0939830:CDS | 15.0% |
| !! | AAAACAATGTAGTTAAAATT+TGG | - | chr6_3:11995005-11995024 | Msa0939830:intron | 15.0% |
| !!! | TCATTTTCTCAAAATTTTAT+CGG | - | chr6_3:11995538-11995557 | Msa0939830:intron | 15.0% |
| !!! | TAAAGTTTTCTGAATGTTTA+AGG | + | chr6_3:11993094-11993113 | None:intergenic | 20.0% |
| !! | AAATGATAAGGTTCAAAATA+TGG | + | chr6_3:11993383-11993402 | None:intergenic | 20.0% |
| !! | AATGATATTAATAAGCTTCT+TGG | - | chr6_3:11993479-11993498 | Msa0939830:CDS | 20.0% |
| !!! | TTTGTTTTGTACAATGTTTA+TGG | - | chr6_3:11993658-11993677 | Msa0939830:intron | 20.0% |
| !! | ATATGATTTCTTCACATTTA+TGG | - | chr6_3:11993691-11993710 | Msa0939830:intron | 20.0% |
| !! | CACAAGATACAAAATTAAAA+AGG | + | chr6_3:11993769-11993788 | None:intergenic | 20.0% |
| !! | TAAGTTACACAAAAAGAAAA+AGG | + | chr6_3:11993935-11993954 | None:intergenic | 20.0% |
| !! | GTATTCTATAACATTAGATT+TGG | - | chr6_3:11994052-11994071 | Msa0939830:CDS | 20.0% |
| !!! | TCCATTGGTTTTATTTTTTT+TGG | - | chr6_3:11994204-11994223 | Msa0939830:intron | 20.0% |
| !!! | ATTTATTTTTTGTGTGTCTT+AGG | - | chr6_3:11994316-11994335 | Msa0939830:intron | 20.0% |
| !!! | TACTACTGATGTTTTTTTTA+CGG | - | chr6_3:11994620-11994639 | Msa0939830:intron | 20.0% |
| !!! | TTTTTTACGGTTTTAAATAG+CGG | - | chr6_3:11994633-11994652 | Msa0939830:intron | 20.0% |
| !!! | GAAATCTTTATTTAAAACCT+AGG | - | chr6_3:11994807-11994826 | Msa0939830:CDS | 20.0% |
| !! | AATTCATATACTAATAACCT+AGG | + | chr6_3:11994827-11994846 | None:intergenic | 20.0% |
| !! | AGATATTATGTATGTATGTT+AGG | - | chr6_3:11994909-11994928 | Msa0939830:CDS | 20.0% |
| !!! | CATGTTATACTATTATTTCT+TGG | + | chr6_3:11995089-11995108 | None:intergenic | 20.0% |
| !! | TATTTGTAATTAACCAAGAT+TGG | + | chr6_3:11996043-11996062 | None:intergenic | 20.0% |
| ! | TGTTTATGAAAGGAAAAAGA+GGG | + | chr6_3:11993204-11993223 | None:intergenic | 25.0% |
| ! | TTGTTTATGAAAGGAAAAAG+AGG | + | chr6_3:11993205-11993224 | None:intergenic | 25.0% |
| !! | AAAGAGAGTTTGTTTATGAA+AGG | + | chr6_3:11993214-11993233 | None:intergenic | 25.0% |
| ! | TGAACAATGATCAAATGATA+AGG | + | chr6_3:11993395-11993414 | None:intergenic | 25.0% |
| !! | GAACCTTAATAGTTTTTGAA+GGG | + | chr6_3:11993427-11993446 | None:intergenic | 25.0% |
| ! | TAAAGTTCATAATCAAAACC+AGG | + | chr6_3:11993452-11993471 | None:intergenic | 25.0% |
| ! | TACAAAACAATCATCATCAA+TGG | + | chr6_3:11993588-11993607 | None:intergenic | 25.0% |
| ! | ATTTATGGTTCCATATTTCA+TGG | - | chr6_3:11993706-11993725 | Msa0939830:intron | 25.0% |
| !!! | TAATTGTATTGGTTCAGTTA+TGG | - | chr6_3:11993957-11993976 | Msa0939830:CDS | 25.0% |
| ! | GCCAAAAAAAATAAAACCAA+TGG | + | chr6_3:11994208-11994227 | None:intergenic | 25.0% |
| !!! | GTTTTATTTTTTTTGGCATC+TGG | - | chr6_3:11994211-11994230 | Msa0939830:intron | 25.0% |
| !!! | TAAAGGGTATTGAAAAACAA+AGG | + | chr6_3:11994416-11994435 | None:intergenic | 25.0% |
| ! | CATACATAATATCTCAATGT+TGG | + | chr6_3:11994903-11994922 | None:intergenic | 25.0% |
| ! | TTAATTGAATGATTCAGATG+TGG | - | chr6_3:11995039-11995058 | Msa0939830:intron | 25.0% |
| !! | AGTATTTGTGTTGATGTATA+AGG | - | chr6_3:11995205-11995224 | Msa0939830:intron | 25.0% |
| !! | AAATAATGTTCCTTTTGGTA+TGG | + | chr6_3:11995250-11995269 | None:intergenic | 25.0% |
| !! | ATTGGAAATAATGTTCCTTT+TGG | + | chr6_3:11995255-11995274 | None:intergenic | 25.0% |
| !!! | CAATGATTCTTTAAGTTGTT+TGG | + | chr6_3:11995670-11995689 | None:intergenic | 25.0% |
| ! | ACAATAAAGTACAATGATCT+AGG | - | chr6_3:11996192-11996211 | Msa0939830:five_prime_UTR | 25.0% |
| !! | TATTCGACCTTATATCATTT+TGG | - | chr6_3:11996263-11996282 | Msa0939830:five_prime_UTR | 25.0% |
| ! | ATTGCTTCCAAAATGATATA+AGG | + | chr6_3:11996273-11996292 | None:intergenic | 25.0% |
| TGTGAAAATGCCTAAGAAAT+CGG | + | chr6_3:11993137-11993156 | None:intergenic | 30.0% | |
| AGTGTGTGAAGAAATATAAG+GGG | + | chr6_3:11993180-11993199 | None:intergenic | 30.0% | |
| GAGTGTGTGAAGAAATATAA+GGG | + | chr6_3:11993181-11993200 | None:intergenic | 30.0% | |
| GTTTATGAAAGGAAAAAGAG+GGG | + | chr6_3:11993203-11993222 | None:intergenic | 30.0% | |
| !! | ATGTCAAGTTGATCTTTCAA+TGG | + | chr6_3:11993314-11993333 | None:intergenic | 30.0% |
| ACATTGTGATTCCTACTATA+AGG | - | chr6_3:11993330-11993349 | Msa0939830:CDS | 30.0% | |
| AAATCAAGGTTCCTTATAGT+AGG | + | chr6_3:11993344-11993363 | None:intergenic | 30.0% | |
| TATAAGGAACCTTGATTTCT+TGG | - | chr6_3:11993346-11993365 | Msa0939830:CDS | 30.0% | |
| CATTTGATCATTGTTCAAGA+TGG | - | chr6_3:11993398-11993417 | Msa0939830:CDS | 30.0% | |
| TGACCCTTCAAAAACTATTA+AGG | - | chr6_3:11993421-11993440 | Msa0939830:CDS | 30.0% | |
| ! | GGAACCTTAATAGTTTTTGA+AGG | + | chr6_3:11993428-11993447 | None:intergenic | 30.0% |
| ATGCAAACAAAATCATCACA+AGG | + | chr6_3:11993735-11993754 | None:intergenic | 30.0% | |
| !!! | CTGATCATGGTTTTAAATTG+CGG | - | chr6_3:11993792-11993811 | Msa0939830:intron | 30.0% |
| TTTACATTAGGGTAAAATGC+CGG | - | chr6_3:11993835-11993854 | Msa0939830:intron | 30.0% | |
| TTGAATGTAATCACATGTGT+CGG | + | chr6_3:11994137-11994156 | None:intergenic | 30.0% | |
| TTGAAAAACAAAGGAGTTGA+TGG | + | chr6_3:11994407-11994426 | None:intergenic | 30.0% | |
| ! | TTCTCTAAAAGGGTCATAAA+GGG | + | chr6_3:11994432-11994451 | None:intergenic | 30.0% |
| GTGCATGATATTTAAACTCT+TGG | - | chr6_3:11995159-11995178 | Msa0939830:intron | 30.0% | |
| TTGTTCATGATGAATTGTTC+AGG | - | chr6_3:11995687-11995706 | Msa0939830:intron | 30.0% | |
| ! | GCTTTGCTATGAAAGATATA+GGG | + | chr6_3:11995754-11995773 | None:intergenic | 30.0% |
| ! | TGCTTTGCTATGAAAGATAT+AGG | + | chr6_3:11995755-11995774 | None:intergenic | 30.0% |
| !! | AGAGCAAGATTTTGGAAAAA+TGG | + | chr6_3:11995841-11995860 | None:intergenic | 30.0% |
| !!! | AAGTTTTTCCTTGACTTGTT+TGG | + | chr6_3:11995908-11995927 | None:intergenic | 30.0% |
| AAACAAGTCAAGGAAAAACT+TGG | - | chr6_3:11995907-11995926 | Msa0939830:CDS | 30.0% | |
| TCAGCAAGTTTGTCAAAATA+AGG | + | chr6_3:11995943-11995962 | None:intergenic | 30.0% | |
| !!! | TGGCTTAAGATTTTTTAGCA+GGG | + | chr6_3:11996005-11996024 | None:intergenic | 30.0% |
| !!! | TTGGCTTAAGATTTTTTAGC+AGG | + | chr6_3:11996006-11996025 | None:intergenic | 30.0% |
| ! | ATTGGTTTAGAAGTTGTCAT+TGG | + | chr6_3:11996025-11996044 | None:intergenic | 30.0% |
| ACAAAGGTTACCAAATCTCA+CGG | - | chr6_3:11993034-11993053 | Msa0939830:three_prime_UTR | 35.0% | |
| ! | GGTAACTAAGACTTGTTCAA+AGG | + | chr6_3:11993073-11993092 | None:intergenic | 35.0% |
| GTGTGTGAAGAAATATAAGG+GGG | + | chr6_3:11993179-11993198 | None:intergenic | 35.0% | |
| GGAGTGTGTGAAGAAATATA+AGG | + | chr6_3:11993182-11993201 | None:intergenic | 35.0% | |
| !! | TCAAGTTGATCTTTCAATGG+AGG | + | chr6_3:11993311-11993330 | None:intergenic | 35.0% |
| ACCTTGATTTCTTGGAAATG+TGG | - | chr6_3:11993354-11993373 | Msa0939830:CDS | 35.0% | |
| TCCACATTTCCAAGAAATCA+AGG | + | chr6_3:11993358-11993377 | None:intergenic | 35.0% | |
| TTGATTTCTTGGAAATGTGG+AGG | - | chr6_3:11993357-11993376 | Msa0939830:CDS | 35.0% | |
| AAAACTATTAAGGTTCCACC+TGG | - | chr6_3:11993431-11993450 | Msa0939830:CDS | 35.0% | |
| AGTTCATAATCAAAACCAGG+TGG | + | chr6_3:11993449-11993468 | None:intergenic | 35.0% | |
| TTAATAAGCTTCTTGGTCCT+AGG | - | chr6_3:11993486-11993505 | Msa0939830:CDS | 35.0% | |
| TAATAAGCTTCTTGGTCCTA+GGG | - | chr6_3:11993487-11993506 | Msa0939830:CDS | 35.0% | |
| ! | CGCAATTTAAAACCATGATC+AGG | + | chr6_3:11993794-11993813 | None:intergenic | 35.0% |
| ACACTGCACATCTTTACATT+AGG | - | chr6_3:11993823-11993842 | Msa0939830:intron | 35.0% | |
| CACTGCACATCTTTACATTA+GGG | - | chr6_3:11993824-11993843 | Msa0939830:intron | 35.0% | |
| GTATGTAACAATCCTCTTCA+AGG | - | chr6_3:11994019-11994038 | Msa0939830:CDS | 35.0% | |
| ! | TCCTCTTCAAGGAGATATTT+TGG | - | chr6_3:11994030-11994049 | Msa0939830:CDS | 35.0% |
| ACCAAAATATCTCCTTGAAG+AGG | + | chr6_3:11994034-11994053 | None:intergenic | 35.0% | |
| CGTTATAACACTTCGATTGA+AGG | - | chr6_3:11994091-11994110 | Msa0939830:CDS | 35.0% | |
| ATGTGATTACATTCAATCGC+TGG | - | chr6_3:11994141-11994160 | Msa0939830:intron | 35.0% | |
| ! | TTGTTTTCCAGATGGATCAT+TGG | + | chr6_3:11994345-11994364 | None:intergenic | 35.0% |
| !!! | GCATTGATTTGTTTTCCAGA+TGG | + | chr6_3:11994353-11994372 | None:intergenic | 35.0% |
| ! | CTTCTCTAAAAGGGTCATAA+AGG | + | chr6_3:11994433-11994452 | None:intergenic | 35.0% |
| !! | CTTTATGACCCTTTTAGAGA+AGG | - | chr6_3:11994431-11994450 | Msa0939830:intron | 35.0% |
| ! | AATCAGCTCCTTCTCTAAAA+GGG | + | chr6_3:11994442-11994461 | None:intergenic | 35.0% |
| AAATCAGCTCCTTCTCTAAA+AGG | + | chr6_3:11994443-11994462 | None:intergenic | 35.0% | |
| ATGTTAGGAACACTCACAAT+CGG | - | chr6_3:11994924-11994943 | Msa0939830:CDS | 35.0% | |
| ! | GTGTTGATGTATAAGGTATG+TGG | - | chr6_3:11995212-11995231 | Msa0939830:intron | 35.0% |
| GGAACATTATTTCCAATGTG+TGG | - | chr6_3:11995258-11995277 | Msa0939830:intron | 35.0% | |
| ! | ATTGGACCAGCTATGTATTT+TGG | - | chr6_3:11995309-11995328 | Msa0939830:intron | 35.0% |
| ATGAGACCAAAATACATAGC+TGG | + | chr6_3:11995318-11995337 | None:intergenic | 35.0% | |
| !!! | AGCTATGTATTTTGGTCTCA+TGG | - | chr6_3:11995317-11995336 | Msa0939830:intron | 35.0% |
| !!! | GCTATGTATTTTGGTCTCAT+GGG | - | chr6_3:11995318-11995337 | Msa0939830:intron | 35.0% |
| ATGTCATCATAACGTCCAAT+TGG | + | chr6_3:11995354-11995373 | None:intergenic | 35.0% | |
| ATAGACTCGAAACGATCTTA+TGG | - | chr6_3:11995617-11995636 | Msa0939830:intron | 35.0% | |
| TCAGGTAATCTGTGATCATT+TGG | - | chr6_3:11995705-11995724 | Msa0939830:intron | 35.0% | |
| CAGGTAATCTGTGATCATTT+GGG | - | chr6_3:11995706-11995725 | Msa0939830:intron | 35.0% | |
| TGCTATGAAAGATATAGGGA+AGG | + | chr6_3:11995750-11995769 | None:intergenic | 35.0% | |
| CTTTCCTTAGGTTCACAAAT+GGG | + | chr6_3:11995783-11995802 | None:intergenic | 35.0% | |
| TCTTTCCTTAGGTTCACAAA+TGG | + | chr6_3:11995784-11995803 | None:intergenic | 35.0% | |
| ! | AACCTAAGGAAAGAGTACAA+AGG | - | chr6_3:11995790-11995809 | Msa0939830:CDS | 35.0% |
| ! | AAGAGTACAAAGGCATATTC+TGG | - | chr6_3:11995800-11995819 | Msa0939830:CDS | 35.0% |
| !! | CTTTTGGAAGAGCAAGATTT+TGG | + | chr6_3:11995849-11995868 | None:intergenic | 35.0% |
| ! | TGAACAGTTGTGCATTCTTT+TGG | + | chr6_3:11995865-11995884 | None:intergenic | 35.0% |
| TGAAATGTCCAAACAAGTCA+AGG | - | chr6_3:11995897-11995916 | Msa0939830:CDS | 35.0% | |
| GACAACTTCTAAACCAATCT+TGG | - | chr6_3:11996027-11996046 | Msa0939830:exon | 35.0% | |
| ! | GATTTGGTAACCTTTGTGGA+TGG | + | chr6_3:11993031-11993050 | None:intergenic | 40.0% |
| ! | GTGAGATTTGGTAACCTTTG+TGG | + | chr6_3:11993035-11993054 | None:intergenic | 40.0% |
| ! | AGACTTGTTCAAAGGTTGTG+TGG | + | chr6_3:11993065-11993084 | None:intergenic | 40.0% |
| TAAGAAATCGGCACTAGTGT+GGG | + | chr6_3:11993125-11993144 | None:intergenic | 40.0% | |
| ATATAAGGGGGTGAGAATAG+TGG | + | chr6_3:11993167-11993186 | None:intergenic | 40.0% | |
| GAAGCCATTGTTGCAACAAA+GGG | + | chr6_3:11993281-11993300 | None:intergenic | 40.0% | |
| TGAAGCCATTGTTGCAACAA+AGG | + | chr6_3:11993282-11993301 | None:intergenic | 40.0% | |
| AATGAAATGCAAGAAGCCCT+AGG | + | chr6_3:11993506-11993525 | None:intergenic | 40.0% | |
| GGCTTCTTGCATTTCATTCA+AGG | - | chr6_3:11993508-11993527 | Msa0939830:CDS | 40.0% | |
| ! | ATGTCGTTGCTTTGGTTACA+TGG | - | chr6_3:11993538-11993557 | Msa0939830:CDS | 40.0% |
| CACAAGGAAGCCATGAAATA+TGG | + | chr6_3:11993719-11993738 | None:intergenic | 40.0% | |
| GTATCTTGTGTTCCTGATCA+TGG | - | chr6_3:11993779-11993798 | Msa0939830:intron | 40.0% | |
| !! | TCAATCGCTGGTTCTATTGA+AGG | - | chr6_3:11994153-11994172 | Msa0939830:intron | 40.0% |
| TATTGAAGGACTGTTCAGTG+AGG | - | chr6_3:11994167-11994186 | Msa0939830:intron | 40.0% | |
| !! | TACCCTTTTAGTCTTCGTGA+AGG | - | chr6_3:11994473-11994492 | Msa0939830:intron | 40.0% |
| CACCTTCACGAAGACTAAAA+GGG | + | chr6_3:11994478-11994497 | None:intergenic | 40.0% | |
| ACACCTTCACGAAGACTAAA+AGG | + | chr6_3:11994479-11994498 | None:intergenic | 40.0% | |
| AGTCCATGAGAAATAGCTGT+TGG | + | chr6_3:11994503-11994522 | None:intergenic | 40.0% | |
| !! | CAGCTATTTCTCATGGACTT+TGG | - | chr6_3:11994504-11994523 | Msa0939830:intron | 40.0% |
| !! | TGAGTAGGAGCATCATAATC+TGG | + | chr6_3:11994539-11994558 | None:intergenic | 40.0% |
| !!! | ACGGTTTTAAATAGCGGTCA+CGG | - | chr6_3:11994639-11994658 | Msa0939830:intron | 40.0% |
| ACTGTTCTGACCATACCAAA+AGG | - | chr6_3:11995237-11995256 | Msa0939830:intron | 40.0% | |
| TCCAATGTGTGGAATGAACT+TGG | - | chr6_3:11995269-11995288 | Msa0939830:intron | 40.0% | |
| GCATTTGATCGTGATCTGAT+TGG | - | chr6_3:11995291-11995310 | Msa0939830:intron | 40.0% | |
| !!! | TATTTTGGTCTCATGGGAGA+TGG | - | chr6_3:11995324-11995343 | Msa0939830:intron | 40.0% |
| TTGGACGTTATGATGACATG+TGG | - | chr6_3:11995355-11995374 | Msa0939830:intron | 40.0% | |
| TGGACGTTATGATGACATGT+GGG | - | chr6_3:11995356-11995375 | Msa0939830:intron | 40.0% | |
| TTCTGATTGTAGGCATGTTC+TGG | - | chr6_3:11995467-11995486 | Msa0939830:intron | 40.0% | |
| ! | ATCTGTGATCATTTGGGACT+TGG | - | chr6_3:11995712-11995731 | Msa0939830:intron | 40.0% |
| GTAACCCATTTGTGAACCTA+AGG | - | chr6_3:11995776-11995795 | Msa0939830:CDS | 40.0% | |
| TGCCTTTGTACTCTTTCCTT+AGG | + | chr6_3:11995795-11995814 | None:intergenic | 40.0% | |
| !! | TGACAAACTTGCTGATGCTA+TGG | - | chr6_3:11995948-11995967 | Msa0939830:CDS | 40.0% |
| AAGAAATCGGCACTAGTGTG+GGG | + | chr6_3:11993124-11993143 | None:intergenic | 45.0% | |
| CTAAGAAATCGGCACTAGTG+TGG | + | chr6_3:11993126-11993145 | None:intergenic | 45.0% | |
| !! | CACACTAGTGCCGATTTCTT+AGG | - | chr6_3:11993124-11993143 | Msa0939830:three_prime_UTR | 45.0% |
| CTCTCCCTTTGTTGCAACAA+TGG | - | chr6_3:11993274-11993293 | Msa0939830:three_prime_UTR | 45.0% | |
| TACGGTTGCAAACGGCAATT+TGG | - | chr6_3:11993874-11993893 | Msa0939830:intron | 45.0% | |
| ACCAATGGAACGACTAACGA+GGG | + | chr6_3:11994193-11994212 | None:intergenic | 45.0% | |
| AACCAATGGAACGACTAACG+AGG | + | chr6_3:11994194-11994213 | None:intergenic | 45.0% | |
| TAGGTTGCCAATGATCCATC+TGG | - | chr6_3:11994335-11994354 | Msa0939830:intron | 45.0% | |
| !! | GAAGGAGCTGATTTTGTTCG+TGG | - | chr6_3:11994449-11994468 | Msa0939830:intron | 45.0% |
| !! | GTGCCAACAGCTATTTCTCA+TGG | - | chr6_3:11994497-11994516 | Msa0939830:intron | 45.0% |
| AGAGGTTTGACAAGCTGAGT+AGG | + | chr6_3:11994554-11994573 | None:intergenic | 45.0% | |
| AGCTTGTCAAACCTCTTGAG+AGG | - | chr6_3:11994558-11994577 | Msa0939830:intron | 45.0% | |
| AACCTCTTGAGAGGAACACT+AGG | - | chr6_3:11994567-11994586 | Msa0939830:intron | 45.0% | |
| TACCTAGTGTTCCTCTCAAG+AGG | + | chr6_3:11994572-11994591 | None:intergenic | 45.0% | |
| GCCAAGTTCATTCCACACAT+TGG | + | chr6_3:11995273-11995292 | None:intergenic | 45.0% | |
| CTACTCGAATCTACGTTGCA+CGG | - | chr6_3:11995440-11995459 | Msa0939830:intron | 45.0% | |
| GAGTCTATGAAGCACGAACA+CGG | + | chr6_3:11995605-11995624 | None:intergenic | 45.0% | |
| TTGGGACTTGGAATCAAGAC+TGG | - | chr6_3:11995724-11995743 | Msa0939830:intron | 45.0% | |
| ! | GTACAAAGGCATATTCTGGC+AGG | - | chr6_3:11995804-11995823 | Msa0939830:CDS | 45.0% |
| TTGCTGATGCTATGGTCACT+TGG | - | chr6_3:11995956-11995975 | Msa0939830:CDS | 45.0% | |
| TGGTCACTTGGATTGAAGCT+TGG | - | chr6_3:11995968-11995987 | Msa0939830:CDS | 45.0% | |
| GGTCACTTGGATTGAAGCTT+GGG | - | chr6_3:11995969-11995988 | Msa0939830:CDS | 45.0% | |
| !!! | TATTTATTTATTTTTTTCTT+AGG | - | chr6_3:11994785-11994804 | Msa0939830:CDS | 5.0% |
| !! | TGTGGTGTTGCCGTGAGATT+TGG | + | chr6_3:11993047-11993066 | None:intergenic | 50.0% |
| GACTCTGCATGTCGTTGCTT+TGG | - | chr6_3:11993530-11993549 | Msa0939830:CDS | 50.0% | |
| GGGTAAAATGCCGGCAAATG+TGG | - | chr6_3:11993844-11993863 | Msa0939830:intron | 50.0% | |
| GTATATGCGGCCACATTTGC+CGG | + | chr6_3:11993857-11993876 | None:intergenic | 50.0% | |
| GGCAAATGTGGCCGCATATA+CGG | - | chr6_3:11993856-11993875 | Msa0939830:intron | 50.0% | |
| GCCGCATATACGGTTGCAAA+CGG | - | chr6_3:11993866-11993885 | Msa0939830:intron | 50.0% | |
| GCCGTTTGCAACCGTATATG+CGG | + | chr6_3:11993870-11993889 | None:intergenic | 50.0% | |
| ATGGGAGATGGTCAGCCAAT+TGG | - | chr6_3:11995336-11995355 | Msa0939830:intron | 50.0% | |
| CGTTATGATGACATGTGGGC+TGG | - | chr6_3:11995360-11995379 | Msa0939830:intron | 50.0% | |
| GCACGGACACTTCTGATTGT+AGG | - | chr6_3:11995457-11995476 | Msa0939830:intron | 50.0% | |
| !! | CACAAGTGTCGACGTTGTGT+CGG | + | chr6_3:11995502-11995521 | None:intergenic | 50.0% |
| ACGAACACGGACACGGATAT+TGG | + | chr6_3:11995592-11995611 | None:intergenic | 50.0% | |
| ATGAAGCACGAACACGGACA+CGG | + | chr6_3:11995599-11995618 | None:intergenic | 50.0% | |
| GCCCTCGTTAGTCGTTCCAT+TGG | - | chr6_3:11994189-11994208 | Msa0939830:intron | 55.0% | |
| !! | ATGATGACATGTGGGCTGGC+TGG | - | chr6_3:11995364-11995383 | Msa0939830:intron | 55.0% |
| !! | GTGGGCTGGCTGGTGCTGCA+AGG | - | chr6_3:11995374-11995393 | Msa0939830:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 11993025 | 11996313 | 11993025 | ID=Msa0939830;Name=Msa0939830 |
| chr6_3 | mRNA | 11993025 | 11996313 | 11993025 | ID=Msa0939830-mRNA-1;Parent=Msa0939830;Name=Msa0939830-mRNA-1;_AED=0.01;_eAED=0.01;_QI=268|1|1|1|1|1|4|293|347 |
| chr6_3 | exon | 11993025 | 11993629 | 11993025 | ID=Msa0939830-mRNA-1:exon:3959;Parent=Msa0939830-mRNA-1 |
| chr6_3 | exon | 11993943 | 11994111 | 11993943 | ID=Msa0939830-mRNA-1:exon:3958;Parent=Msa0939830-mRNA-1 |
| chr6_3 | exon | 11994750 | 11995000 | 11994750 | ID=Msa0939830-mRNA-1:exon:3957;Parent=Msa0939830-mRNA-1 |
| chr6_3 | exon | 11995734 | 11996313 | 11995734 | ID=Msa0939830-mRNA-1:exon:3956;Parent=Msa0939830-mRNA-1 |
| chr6_3 | five_prime_UTR | 11996046 | 11996313 | 11996046 | ID=Msa0939830-mRNA-1:five_prime_utr;Parent=Msa0939830-mRNA-1 |
| chr6_3 | CDS | 11995734 | 11996045 | 11995734 | ID=Msa0939830-mRNA-1:cds;Parent=Msa0939830-mRNA-1 |
| chr6_3 | CDS | 11994750 | 11995000 | 11994750 | ID=Msa0939830-mRNA-1:cds;Parent=Msa0939830-mRNA-1 |
| chr6_3 | CDS | 11993943 | 11994111 | 11993943 | ID=Msa0939830-mRNA-1:cds;Parent=Msa0939830-mRNA-1 |
| chr6_3 | CDS | 11993318 | 11993629 | 11993318 | ID=Msa0939830-mRNA-1:cds;Parent=Msa0939830-mRNA-1 |
| chr6_3 | three_prime_UTR | 11993025 | 11993317 | 11993025 | ID=Msa0939830-mRNA-1:three_prime_utr;Parent=Msa0939830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
