Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0874730 | XP_013451101.1 | 98.847 | 347 | 4 | 0 | 1 | 347 | 1 | 347 | 0.0 | 714 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0874730 | sp|Q8H8T0|RGP1_ORYSJ | 86.628 | 344 | 46 | 0 | 4 | 347 | 14 | 357 | 0.0 | 646 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0874730 | 0.824488 | 7.856183e-54 | -8.615850e-47 |
| Msa0027800 | Msa0874730 | 0.805815 | 1.112512e-49 | -8.615850e-47 |
| Msa0033610 | Msa0874730 | 0.811346 | 7.329335e-51 | -8.615850e-47 |
| Msa0045620 | Msa0874730 | 0.813345 | 2.682722e-51 | -8.615850e-47 |
| Msa0050530 | Msa0874730 | 0.829916 | 3.937920e-55 | -8.615850e-47 |
| Msa0080370 | Msa0874730 | 0.801564 | 8.485929e-49 | -8.615850e-47 |
| Msa0091350 | Msa0874730 | 0.805302 | 1.425237e-49 | -8.615850e-47 |
| Msa0094180 | Msa0874730 | 0.800109 | 1.681836e-48 | -8.615850e-47 |
| Msa0100600 | Msa0874730 | 0.821776 | 3.373502e-53 | -8.615850e-47 |
| Msa0100890 | Msa0874730 | 0.823706 | 1.198828e-53 | -8.615850e-47 |
| Msa0605520 | Msa0874730 | 0.824813 | 6.586235e-54 | -8.615850e-47 |
| Msa0618840 | Msa0874730 | 0.801382 | 9.243477e-49 | -8.615850e-47 |
| Msa0618990 | Msa0874730 | 0.813972 | 1.952825e-51 | -8.615850e-47 |
| Msa0623310 | Msa0874730 | 0.810197 | 1.299495e-50 | -8.615850e-47 |
| Msa0640800 | Msa0874730 | 0.800726 | 1.259083e-48 | -8.615850e-47 |
| Msa0647440 | Msa0874730 | 0.813877 | 2.048733e-51 | -8.615850e-47 |
| Msa0658120 | Msa0874730 | 0.812956 | 3.265773e-51 | -8.615850e-47 |
| Msa0663290 | Msa0874730 | 0.803414 | 3.526565e-49 | -8.615850e-47 |
| Msa0664070 | Msa0874730 | 0.800448 | 1.434447e-48 | -8.615850e-47 |
| Msa0688380 | Msa0874730 | 0.812770 | 3.586693e-51 | -8.615850e-47 |
| Msa0689830 | Msa0874730 | 0.848863 | 4.674048e-60 | -8.615850e-47 |
| Msa0702970 | Msa0874730 | 0.827924 | 1.195763e-54 | -8.615850e-47 |
| Msa0705140 | Msa0874730 | 0.812996 | 3.200849e-51 | -8.615850e-47 |
| Msa0705180 | Msa0874730 | 0.805970 | 1.032221e-49 | -8.615850e-47 |
| Msa0707260 | Msa0874730 | 0.830596 | 2.686245e-55 | -8.615850e-47 |
| Msa0720280 | Msa0874730 | 0.810147 | 1.331661e-50 | -8.615850e-47 |
| Msa0731780 | Msa0874730 | 0.803362 | 3.614634e-49 | -8.615850e-47 |
| Msa0751720 | Msa0874730 | 0.822729 | 2.027330e-53 | -8.615850e-47 |
| Msa0767280 | Msa0874730 | 0.821441 | 4.030692e-53 | -8.615850e-47 |
| Msa0771910 | Msa0874730 | 0.824766 | 6.756483e-54 | -8.615850e-47 |
| Msa0803140 | Msa0874730 | 0.815046 | 1.129989e-51 | -8.615850e-47 |
| Msa0816080 | Msa0874730 | 0.805764 | 1.140550e-49 | -8.615850e-47 |
| Msa0831820 | Msa0874730 | 0.805662 | 1.198132e-49 | -8.615850e-47 |
| Msa0837680 | Msa0874730 | 0.835682 | 1.455645e-56 | -8.615850e-47 |
| Msa0131810 | Msa0874730 | 0.801741 | 7.803785e-49 | -8.615850e-47 |
| Msa0147680 | Msa0874730 | 0.802003 | 6.895697e-49 | -8.615850e-47 |
| Msa0168380 | Msa0874730 | 0.813559 | 2.407101e-51 | -8.615850e-47 |
| Msa0173250 | Msa0874730 | 0.801330 | 9.472741e-49 | -8.615850e-47 |
| Msa0204970 | Msa0874730 | 0.809174 | 2.156164e-50 | -8.615850e-47 |
| Msa0225800 | Msa0874730 | 0.805513 | 1.287284e-49 | -8.615850e-47 |
| Msa0388620 | Msa0874730 | 0.813938 | 1.986265e-51 | -8.615850e-47 |
| Msa0416210 | Msa0874730 | 0.816674 | 4.896580e-52 | -8.615850e-47 |
| Msa0422900 | Msa0874730 | 0.802376 | 5.776287e-49 | -8.615850e-47 |
| Msa0429970 | Msa0874730 | 0.808250 | 3.396522e-50 | -8.615850e-47 |
| Msa0433630 | Msa0874730 | 0.836249 | 1.045225e-56 | -8.615850e-47 |
| Msa0458100 | Msa0874730 | 0.805570 | 1.252672e-49 | -8.615850e-47 |
| Msa0477480 | Msa0874730 | 0.824692 | 7.034421e-54 | -8.615850e-47 |
| Msa0249870 | Msa0874730 | 0.811174 | 7.987712e-51 | -8.615850e-47 |
| Msa0260570 | Msa0874730 | 0.807247 | 5.547250e-50 | -8.615850e-47 |
| Msa0288400 | Msa0874730 | 0.803715 | 3.054527e-49 | -8.615850e-47 |
| Msa0342220 | Msa0874730 | 0.805352 | 1.391622e-49 | -8.615850e-47 |
| Msa0514020 | Msa0874730 | 0.801049 | 1.081541e-48 | -8.615850e-47 |
| Msa0521510 | Msa0874730 | 0.822980 | 1.772055e-53 | -8.615850e-47 |
| Msa0521530 | Msa0874730 | 0.831300 | 1.805015e-55 | -8.615850e-47 |
| Msa0553750 | Msa0874730 | 0.800138 | 1.658593e-48 | -8.615850e-47 |
| Msa0566460 | Msa0874730 | 0.815540 | 8.772371e-52 | -8.615850e-47 |
| Msa0572830 | Msa0874730 | 0.848627 | 5.434707e-60 | -8.615850e-47 |
| Msa0576330 | Msa0874730 | 0.812260 | 4.636079e-51 | -8.615850e-47 |
| Msa0582460 | Msa0874730 | 0.800061 | 1.719702e-48 | -8.615850e-47 |
| Msa0846900 | Msa0874730 | 0.866437 | 2.853795e-65 | -8.615850e-47 |
| Msa0850600 | Msa0874730 | 0.813332 | 2.700438e-51 | -8.615850e-47 |
| Msa0861440 | Msa0874730 | 0.811216 | 7.820967e-51 | -8.615850e-47 |
| Msa0874730 | Msa0926310 | 0.831161 | 1.952287e-55 | -8.615850e-47 |
| Msa0874730 | Msa0939830 | 0.840918 | 6.509793e-58 | -8.615850e-47 |
| Msa0874730 | Msa0976380 | 0.900800 | 5.095318e-78 | -8.615850e-47 |
| Msa0874730 | Msa1000780 | 0.826465 | 2.673099e-54 | -8.615850e-47 |
| Msa0874730 | Msa1021560 | 0.819812 | 9.539244e-53 | -8.615850e-47 |
| Msa0874730 | Msa1041370 | 0.812163 | 4.868429e-51 | -8.615850e-47 |
| Msa0874730 | Msa1060300 | 0.820461 | 6.776796e-53 | -8.615850e-47 |
| Msa0874730 | Msa1081270 | 0.818188 | 2.232804e-52 | -8.615850e-47 |
| Msa0874730 | Msa1085680 | 0.813598 | 2.359813e-51 | -8.615850e-47 |
| Msa0874730 | Msa1105540 | 0.801468 | 8.877871e-49 | -8.615850e-47 |
| Msa0874730 | Msa1124210 | 0.840475 | 8.502841e-58 | -8.615850e-47 |
| Msa0874730 | Msa1144990 | 0.809889 | 1.513824e-50 | -8.615850e-47 |
| Msa0874730 | Msa1148930 | 0.821739 | 3.439263e-53 | -8.615850e-47 |
| Msa0874730 | Msa1220580 | 0.809792 | 1.588069e-50 | -8.615850e-47 |
| Msa0874730 | Msa1226370 | 0.818156 | 2.270541e-52 | -8.615850e-47 |
| Msa0874730 | Msa1240940 | 0.815631 | 8.373697e-52 | -8.615850e-47 |
| Msa0874730 | Msa1254420 | 0.812009 | 5.259548e-51 | -8.615850e-47 |
| Msa0874730 | Msa1282300 | 0.866590 | 2.550928e-65 | -8.615850e-47 |
| Msa0874730 | Msa1294790 | 0.805215 | 1.486330e-49 | -8.615850e-47 |
| Msa0874730 | Msa1301830 | 0.829096 | 6.232359e-55 | -8.615850e-47 |
| Msa0874730 | Msa1334560 | 0.820814 | 5.622425e-53 | -8.615850e-47 |
| Msa0874730 | Msa1339230 | 0.811621 | 6.388681e-51 | -8.615850e-47 |
| Msa0874730 | Msa1371800 | 0.807965 | 3.905675e-50 | -8.615850e-47 |
| Msa0874730 | Msa1376310 | 0.810641 | 1.041704e-50 | -8.615850e-47 |
| Msa0874730 | Msa1393560 | 0.811770 | 5.928984e-51 | -8.615850e-47 |
| Msa0874730 | Msa1395050 | 0.817737 | 2.824045e-52 | -8.615850e-47 |
| Msa0874730 | Msa1420830 | 0.808829 | 2.555228e-50 | -8.615850e-47 |
| Msa0874730 | Msa1426320 | 0.813084 | 3.060576e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0874730 | MtrunA17_Chr6g0455451 | 98.847 | 347 | 4 | 0 | 1 | 347 | 1 | 347 | 0.0 | 714 |
| Msa0874730 | MtrunA17_Chr7g0219951 | 90.087 | 343 | 34 | 0 | 1 | 343 | 1 | 343 | 0.0 | 662 |
| Msa0874730 | MtrunA17_Chr5g0419801 | 87.536 | 345 | 40 | 1 | 1 | 342 | 1 | 345 | 0.0 | 642 |
| Msa0874730 | MtrunA17_Chr2g0308361 | 85.673 | 342 | 49 | 0 | 2 | 343 | 4 | 345 | 0.0 | 633 |
| Msa0874730 | MtrunA17_Chr7g0249031 | 49.412 | 340 | 166 | 4 | 10 | 344 | 9 | 347 | 3.08e-125 | 363 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0874730 | AT3G02230.1 | 88.304 | 342 | 40 | 0 | 6 | 347 | 16 | 357 | 0.0 | 644 |
| Msa0874730 | AT5G15650.1 | 87.611 | 339 | 42 | 0 | 5 | 343 | 15 | 353 | 0.0 | 639 |
| Msa0874730 | AT3G08900.1 | 83.284 | 341 | 57 | 0 | 5 | 345 | 11 | 351 | 0.0 | 621 |
| Msa0874730 | AT5G50750.1 | 77.101 | 345 | 79 | 0 | 2 | 346 | 8 | 352 | 0.0 | 582 |
| Msa0874730 | AT5G16510.2 | 48.680 | 341 | 169 | 3 | 9 | 344 | 8 | 347 | 2.20e-120 | 351 |
| Msa0874730 | AT5G16510.1 | 48.680 | 341 | 169 | 3 | 9 | 344 | 8 | 347 | 2.20e-120 | 351 |
Find 103 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAAGGAACCTTGATTTCT+TGG | 0.164404 | 6_1:-10544217 | Msa0874730:CDS |
| TATTGGACCTTATATCATTT+TGG | 0.203757 | 6_1:-10541080 | Msa0874730:three_prime_UTR |
| ATTGGACCAGCTATGTATTT+TGG | 0.233920 | 6_1:-10542046 | Msa0874730:CDS |
| TTGATTATGAACTTTATAAT+AGG | 0.252799 | 6_1:-10544107 | Msa0874730:CDS |
| ACACCTTCACGAAGACTAAA+AGG | 0.265235 | 6_1:+10543072 | None:intergenic |
| GCTTTGCTATGAAAGATATA+GGG | 0.282849 | 6_1:+10541592 | None:intergenic |
| AATGATATTAATAAGCTTCT+TGG | 0.286010 | 6_1:-10544084 | Msa0874730:CDS |
| AAATGATAAGGTTCAAAATA+TGG | 0.294723 | 6_1:+10544183 | None:intergenic |
| AAATCAGCACCTTCTCTAAA+AGG | 0.303616 | 6_1:+10543108 | None:intergenic |
| TGAACAGTTGTGCATTCTTT+TGG | 0.313245 | 6_1:+10541481 | None:intergenic |
| CAAGAAATCAAGGTTCCTTA+TGG | 0.323592 | 6_1:+10544218 | None:intergenic |
| ATTGGAAATAATGTTCCTTT+TGG | 0.323828 | 6_1:+10542103 | None:intergenic |
| TGCTTTGCTATGAAAGATAT+AGG | 0.326830 | 6_1:+10541591 | None:intergenic |
| TCTGCAAGCTTGTCAAAATA+AGG | 0.337023 | 6_1:+10541403 | None:intergenic |
| TCAGGTAATCTGTGATCATT+TGG | 0.343486 | 6_1:-10541638 | Msa0874730:intron |
| CACACTAGTGCCGATTTCTT+AGG | 0.352599 | 6_1:-10544439 | Msa0874730:five_prime_UTR |
| GAGAACTTCTAAACCAATCT+TGG | 0.355569 | 6_1:-10541316 | Msa0874730:three_prime_UTR |
| GACTCTGCATGTCGTTGCTT+TGG | 0.356660 | 6_1:-10544033 | Msa0874730:CDS |
| GGCTTCTTGCATTTCATTCA+AGG | 0.357909 | 6_1:-10544055 | Msa0874730:CDS |
| TGCCTTTGTACTCTTTCCTT+AGG | 0.366078 | 6_1:+10541551 | None:intergenic |
| CTTCTCTAAAAGGATCATAA+AGG | 0.369468 | 6_1:+10543118 | None:intergenic |
| TATTTGTAATTAACCAAGAT+TGG | 0.377120 | 6_1:+10541303 | None:intergenic |
| ATGTCGTTGCTTTGGTTACA+TGG | 0.386419 | 6_1:-10544025 | Msa0874730:CDS |
| ATCTGTGATCATTTGGGACT+TGG | 0.386651 | 6_1:-10541631 | Msa0874730:CDS |
| TGAGTGCTAGAGATGATTAT+TGG | 0.388255 | 6_1:-10541097 | Msa0874730:three_prime_UTR |
| AAGAGTACAAAGGCATATTC+TGG | 0.396965 | 6_1:-10541543 | Msa0874730:CDS |
| ATTGCTTCCAAAATGATATA+AGG | 0.402081 | 6_1:+10541073 | None:intergenic |
| GGTCACTTGGATTGAAGCTT+GGG | 0.405282 | 6_1:-10541374 | Msa0874730:CDS |
| AAAGAGAGTTTGTTTATGAA+AGG | 0.406681 | 6_1:+10544352 | None:intergenic |
| TGTGGTGTTGCCGTGAGATT+TGG | 0.416322 | 6_1:+10544519 | None:intergenic |
| CAGCTATTTCTCATGGACTT+TGG | 0.419478 | 6_1:-10543044 | Msa0874730:CDS |
| ATTGGTTTAGAAGTTCTCAT+TGG | 0.419499 | 6_1:+10541321 | None:intergenic |
| GGAGTGTGTGAAGAAATATA+AGG | 0.422112 | 6_1:+10544384 | None:intergenic |
| TGTGAAAATGCCTAAGAAAT+CGG | 0.428284 | 6_1:+10544429 | None:intergenic |
| TTAATAAGCTTCTTGGTCCT+AGG | 0.431885 | 6_1:-10544077 | Msa0874730:CDS |
| GCATTTGATCGTGATCTGAT+TGG | 0.439539 | 6_1:-10542064 | Msa0874730:CDS |
| ATGGGAGATGGTCAGCCAAT+TGG | 0.441337 | 6_1:-10542019 | Msa0874730:CDS |
| GTGAGATTTGGTAACCTTTG+TGG | 0.448364 | 6_1:+10544531 | None:intergenic |
| GAGTGTGTGAAGAAATATAA+GGG | 0.450702 | 6_1:+10544385 | None:intergenic |
| CTTTCCTTAGGTTCACAAAT+GGG | 0.453354 | 6_1:+10541563 | None:intergenic |
| CATTTGATCATTGTTCAAGA+TGG | 0.457553 | 6_1:-10544165 | Msa0874730:CDS |
| TTCTCTAAAAGGATCATAAA+GGG | 0.459821 | 6_1:+10543119 | None:intergenic |
| ACAATAAAGTACAATGATCT+AGG | 0.463295 | 6_1:-10541151 | Msa0874730:three_prime_UTR |
| TTGGTTTAGAAGTTCTCATT+GGG | 0.467920 | 6_1:+10541322 | None:intergenic |
| ACATTGTGATTCCTACCATA+AGG | 0.469348 | 6_1:-10544233 | Msa0874730:CDS |
| ACCTTGATTTCTTGGAAATG+TGG | 0.471408 | 6_1:-10544209 | Msa0874730:CDS |
| TCTTTCCTTAGGTTCACAAA+TGG | 0.471856 | 6_1:+10541562 | None:intergenic |
| CTCTCGCTTTATTGCAACAA+TGG | 0.472363 | 6_1:-10544289 | Msa0874730:exon |
| TCCACATTTCCAAGAAATCA+AGG | 0.472751 | 6_1:+10544208 | None:intergenic |
| TAATAAGCTTCTTGGTCCTA+GGG | 0.473474 | 6_1:-10544076 | Msa0874730:CDS |
| TAGGTTGCCAATGATCCATC+TGG | 0.479239 | 6_1:-10543213 | Msa0874730:CDS |
| CAGGTAATCTGTGATCATTT+GGG | 0.483793 | 6_1:-10541637 | Msa0874730:CDS |
| ATGTCAAGTTGATCTTTCAA+TGG | 0.487236 | 6_1:+10544252 | None:intergenic |
| TGAGTAGGAGCATCATAATC+TGG | 0.489281 | 6_1:+10543012 | None:intergenic |
| TGACAAGCTTGCAGATGCTA+TGG | 0.491811 | 6_1:-10541395 | Msa0874730:CDS |
| TGGTCACTTGGATTGAAGCT+TGG | 0.492678 | 6_1:-10541375 | Msa0874730:CDS |
| TGAACAATGATCAAATGATA+AGG | 0.500026 | 6_1:+10544171 | None:intergenic |
| AGAGGCTTGACAAGCTGAGT+AGG | 0.500476 | 6_1:+10542997 | None:intergenic |
| TCCAATGTGTGGAATGAACT+TGG | 0.503402 | 6_1:-10542086 | Msa0874730:CDS |
| TTGGGACTTGGAATCAAGAC+TGG | 0.504781 | 6_1:-10541619 | Msa0874730:CDS |
| ATGTCATCATAACGTCCAAT+TGG | 0.515690 | 6_1:+10542004 | None:intergenic |
| GGAACATTATTTCCAATGTG+TGG | 0.516575 | 6_1:-10542097 | Msa0874730:CDS |
| GGTAACTAAGACTTGTTCAA+AGG | 0.517870 | 6_1:+10544493 | None:intergenic |
| GTGGGCTGGCTGGTGCTGCA+AGG | 0.521238 | 6_1:-10541981 | Msa0874730:intron |
| TAAGAAATCGGCACTAGTGT+GGG | 0.526043 | 6_1:+10544441 | None:intergenic |
| GTCCATGAGAAATAGCTGTT+GGG | 0.527902 | 6_1:+10543049 | None:intergenic |
| GCCAAGTTCATTCCACACAT+TGG | 0.530763 | 6_1:+10542085 | None:intergenic |
| ATGGAGTTGATGGACACAAA+AGG | 0.531538 | 6_1:+10543154 | None:intergenic |
| GTAACCCATTTGTGAACCTA+AGG | 0.533378 | 6_1:-10541567 | Msa0874730:CDS |
| GTCCCAACAGCTATTTCTCA+TGG | 0.539058 | 6_1:-10543051 | Msa0874730:CDS |
| CTAAGAAATCGGCACTAGTG+TGG | 0.539501 | 6_1:+10544440 | None:intergenic |
| TTGCAGATGCTATGGTCACT+TGG | 0.544395 | 6_1:-10541387 | Msa0874730:CDS |
| ATGATGACATGTGGGCTGGC+TGG | 0.546299 | 6_1:-10541991 | Msa0874730:CDS |
| ACTGTTCTGACCATACCAAA+AGG | 0.554365 | 6_1:-10542118 | Msa0874730:CDS |
| AGTCCATGAGAAATAGCTGT+TGG | 0.559966 | 6_1:+10543048 | None:intergenic |
| AATGAAATGCAAGAAGCCCT+AGG | 0.561699 | 6_1:+10544060 | None:intergenic |
| CTTTGCTATGAAAGATATAG+GGG | 0.562362 | 6_1:+10541593 | None:intergenic |
| ATGAGACCAAAATACATAGC+TGG | 0.563502 | 6_1:+10542040 | None:intergenic |
| GTACAAAGGCATATTCTGGC+AGG | 0.565304 | 6_1:-10541539 | Msa0874730:CDS |
| CACCTTCACGAAGACTAAAA+GGG | 0.568809 | 6_1:+10543073 | None:intergenic |
| GTGTTGATGCATAAGGTATG+TGG | 0.570369 | 6_1:-10542143 | Msa0874730:intron |
| AAAACTATTAAGGTTCCACC+TGG | 0.576460 | 6_1:-10544132 | Msa0874730:CDS |
| AAATTCAAATTCAAGATCAA+AGG | 0.579265 | 6_1:+10541277 | None:intergenic |
| TGAAATGTCCAAACAAGTCA+AGG | 0.580634 | 6_1:-10541446 | Msa0874730:CDS |
| GACCTAGTGTTCCTCTCAAG+AGG | 0.582579 | 6_1:+10542979 | None:intergenic |
| CGTTATGATGACATGTGGGC+TGG | 0.587127 | 6_1:-10541995 | Msa0874730:CDS |
| TTGATTTCTTGGAAATGTGG+AGG | 0.588191 | 6_1:-10544206 | Msa0874730:CDS |
| TCAAGTTGATCTTTCAATGG+AGG | 0.604132 | 6_1:+10544255 | None:intergenic |
| AAATCAAGGTTCCTTATGGT+AGG | 0.611467 | 6_1:+10544222 | None:intergenic |
| GATTTGGTAACCTTTGTGGA+TGG | 0.611859 | 6_1:+10544535 | None:intergenic |
| AGCTTGTCAAGCCTCTTGAG+AGG | 0.631328 | 6_1:-10542990 | Msa0874730:CDS |
| ACAAAGGTTACCAAATCTCA+CGG | 0.635679 | 6_1:-10544529 | Msa0874730:five_prime_UTR |
| AGCCTCTTGAGAGGAACACT+AGG | 0.642862 | 6_1:-10542981 | Msa0874730:intron |
| AAGAAATCGGCACTAGTGTG+GGG | 0.663009 | 6_1:+10544442 | None:intergenic |
| TAAAGTTCATAATCAAAACC+AGG | 0.671327 | 6_1:+10544114 | None:intergenic |
| TTGGACGTTATGATGACATG+TGG | 0.675841 | 6_1:-10542000 | Msa0874730:CDS |
| TCTCTCTCTTCCATCCACAA+AGG | 0.677091 | 6_1:-10544545 | None:intergenic |
| AGTGTGTGAAGAAATATAAG+GGG | 0.678455 | 6_1:+10544386 | None:intergenic |
| GTGTGTGAAGAAATATAAGG+GGG | 0.680344 | 6_1:+10544387 | None:intergenic |
| AGACTTGTTCAAAGGTTGTG+TGG | 0.686096 | 6_1:+10544501 | None:intergenic |
| AGTTCATAATCAAAACCAGG+TGG | 0.695438 | 6_1:+10544117 | None:intergenic |
| TGGACGTTATGATGACATGT+GGG | 0.701478 | 6_1:-10541999 | Msa0874730:CDS |
| AACCTAAGGAAAGAGTACAA+AGG | 0.702444 | 6_1:-10541553 | Msa0874730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAAATTAAAACAAACA+AGG | + | chr6_1:10542035-10542054 | None:intergenic | 10.0% |
| !! | ATTAAAAAAAAATACAATGT+TGG | - | chr6_1:10543372-10543391 | Msa0874730:intron | 10.0% |
| !! | GTAGAATTATTATAAAAATA+GGG | + | chr6_1:10543656-10543675 | None:intergenic | 10.0% |
| !! | AGTAGAATTATTATAAAAAT+AGG | + | chr6_1:10543657-10543676 | None:intergenic | 10.0% |
| !!! | TCATTTTTTCAAAATTTTAT+CGG | - | chr6_1:10543785-10543804 | Msa0874730:intron | 10.0% |
| !! | TTGATTATGAACTTTATAAT+AGG | - | chr6_1:10541483-10541502 | Msa0874730:CDS | 15.0% |
| !! | ATTGTATAAAACAATTTACA+TGG | - | chr6_1:10543099-10543118 | Msa0874730:CDS | 15.0% |
| !! | AAAACAATGTAACTAAAATT+TGG | - | chr6_1:10543239-10543258 | Msa0874730:intron | 15.0% |
| !!! | TAAAGTTTTCTGAATGTTTA+AGG | + | chr6_1:10541121-10541140 | None:intergenic | 20.0% |
| !! | AAATGATAAGGTTCAAAATA+TGG | + | chr6_1:10541410-10541429 | None:intergenic | 20.0% |
| !! | AATGATATTAATAAGCTTCT+TGG | - | chr6_1:10541506-10541525 | Msa0874730:CDS | 20.0% |
| !!! | TTTGTTTTGTACAATGTTTA+TGG | - | chr6_1:10541701-10541720 | Msa0874730:intron | 20.0% |
| !! | ATATGATTTCTTCACATTTA+TGG | - | chr6_1:10541734-10541753 | Msa0874730:intron | 20.0% |
| !!! | CTACTTTAGCTTTTTAATAT+TGG | - | chr6_1:10541801-10541820 | Msa0874730:intron | 20.0% |
| !! | TAAGTTACACAAAAAGAAAA+AGG | + | chr6_1:10541978-10541997 | None:intergenic | 20.0% |
| !! | TGTGTAACTTATAATTGTAT+TGG | - | chr6_1:10541987-10542006 | Msa0874730:CDS | 20.0% |
| !! | GTATTCTATAACATTAGATT+TGG | - | chr6_1:10542093-10542112 | Msa0874730:CDS | 20.0% |
| !! | CCAAAAAAAAATAAAACCAA+TGG | + | chr6_1:10542248-10542267 | None:intergenic | 20.0% |
| !!! | CCATTGGTTTTATTTTTTTT+TGG | - | chr6_1:10542245-10542264 | Msa0874730:intron | 20.0% |
| !!! | TTTTATTTTTTTTTGGCATC+TGG | - | chr6_1:10542252-10542271 | Msa0874730:intron | 20.0% |
| !!! | TTTTTTACGGTTTTAAATAG+CGG | - | chr6_1:10542674-10542693 | Msa0874730:intron | 20.0% |
| !! | TTGTGTCATAATCTTTAATA+TGG | - | chr6_1:10542715-10542734 | Msa0874730:intron | 20.0% |
| !! | ATGATCTTCTACAATATTAA+AGG | + | chr6_1:10542922-10542941 | None:intergenic | 20.0% |
| !! | AATTCATATACTAATAACCT+AGG | + | chr6_1:10543061-10543080 | None:intergenic | 20.0% |
| !! | AGATATTATGTATGTATGTT+AGG | - | chr6_1:10543143-10543162 | Msa0874730:CDS | 20.0% |
| !!! | GACAATTCAAATTTAAAGTT+TGG | - | chr6_1:10543203-10543222 | Msa0874730:CDS | 20.0% |
| !!! | CATGTTATACTATTATTTCT+TGG | + | chr6_1:10543323-10543342 | None:intergenic | 20.0% |
| !! | AATTATTGTTCATGATGAAT+TGG | - | chr6_1:10543929-10543948 | Msa0874730:intron | 20.0% |
| !! | TATTTGTAATTAACCAAGAT+TGG | + | chr6_1:10544290-10544309 | None:intergenic | 20.0% |
| !! | AAATTCAAATTCAAGATCAA+AGG | + | chr6_1:10544316-10544335 | None:intergenic | 20.0% |
| ! | TGTTTATGAAAGGAAAAAGA+GGG | + | chr6_1:10541231-10541250 | None:intergenic | 25.0% |
| ! | TTGTTTATGAAAGGAAAAAG+AGG | + | chr6_1:10541232-10541251 | None:intergenic | 25.0% |
| !! | AAAGAGAGTTTGTTTATGAA+AGG | + | chr6_1:10541241-10541260 | None:intergenic | 25.0% |
| ! | TGAACAATGATCAAATGATA+AGG | + | chr6_1:10541422-10541441 | None:intergenic | 25.0% |
| !! | GAACCTTAATAGTTTTTGAA+GGG | + | chr6_1:10541454-10541473 | None:intergenic | 25.0% |
| ! | TAAAGTTCATAATCAAAACC+AGG | + | chr6_1:10541479-10541498 | None:intergenic | 25.0% |
| ! | ATTTATGGTTCCATATTTCA+TGG | - | chr6_1:10541749-10541768 | Msa0874730:intron | 25.0% |
| ! | CAAATAAAATCATCACAATG+AGG | + | chr6_1:10541775-10541794 | None:intergenic | 25.0% |
| !! | TTGTGTTTTATGTGTCAATA+CGG | - | chr6_1:10541948-10541967 | Msa0874730:intron | 25.0% |
| !!! | TAATTGTATTGGTTCAGTTA+TGG | - | chr6_1:10541998-10542017 | Msa0874730:CDS | 25.0% |
| !!! | TTTCTTATGTACTTTTTGTG+TGG | - | chr6_1:10542352-10542371 | Msa0874730:intron | 25.0% |
| !!! | TAAAGGGTATTGAAAAACAA+TGG | + | chr6_1:10542458-10542477 | None:intergenic | 25.0% |
| !! | TTCTCTAAAAGGATCATAAA+GGG | + | chr6_1:10542474-10542493 | None:intergenic | 25.0% |
| ! | TAATATGGAAAATACTTGTG+TGG | - | chr6_1:10542730-10542749 | Msa0874730:intron | 25.0% |
| !! | GAAATCTTTATTTACAACCT+AGG | - | chr6_1:10543041-10543060 | Msa0874730:CDS | 25.0% |
| ! | CATACATAATATCTCAATGT+TGG | + | chr6_1:10543137-10543156 | None:intergenic | 25.0% |
| ! | TTAATTGAATGATTCAGATG+TGG | - | chr6_1:10543273-10543292 | Msa0874730:intron | 25.0% |
| !! | AAATAATGTTCCTTTTGGTA+TGG | + | chr6_1:10543485-10543504 | None:intergenic | 25.0% |
| !! | ATTGGAAATAATGTTCCTTT+TGG | + | chr6_1:10543490-10543509 | None:intergenic | 25.0% |
| ! | ATAGATTCAAATCGATCTTA+TGG | - | chr6_1:10543864-10543883 | Msa0874730:intron | 25.0% |
| ! | ACAATAAAGTACAATGATCT+AGG | - | chr6_1:10544439-10544458 | Msa0874730:five_prime_UTR | 25.0% |
| !! | TATTGGACCTTATATCATTT+TGG | - | chr6_1:10544510-10544529 | Msa0874730:five_prime_UTR | 25.0% |
| ! | ATTGCTTCCAAAATGATATA+AGG | + | chr6_1:10544520-10544539 | None:intergenic | 25.0% |
| TGTGAAAATGCCTAAGAAAT+CGG | + | chr6_1:10541164-10541183 | None:intergenic | 30.0% | |
| AGTGTGTGAAGAAATATAAG+GGG | + | chr6_1:10541207-10541226 | None:intergenic | 30.0% | |
| GAGTGTGTGAAGAAATATAA+GGG | + | chr6_1:10541208-10541227 | None:intergenic | 30.0% | |
| GTTTATGAAAGGAAAAAGAG+GGG | + | chr6_1:10541230-10541249 | None:intergenic | 30.0% | |
| !! | ATGTCAAGTTGATCTTTCAA+TGG | + | chr6_1:10541341-10541360 | None:intergenic | 30.0% |
| CATTTGATCATTGTTCAAGA+TGG | - | chr6_1:10541425-10541444 | Msa0874730:CDS | 30.0% | |
| TGACCCTTCAAAAACTATTA+AGG | - | chr6_1:10541448-10541467 | Msa0874730:CDS | 30.0% | |
| ! | GGAACCTTAATAGTTTTTGA+AGG | + | chr6_1:10541455-10541474 | None:intergenic | 30.0% |
| TAATATTGGATATTGCGTTC+CGG | - | chr6_1:10541815-10541834 | Msa0874730:intron | 30.0% | |
| ! | TGCATTTTACCCTAATGTAA+AGG | + | chr6_1:10541879-10541898 | None:intergenic | 30.0% |
| TTTACATTAGGGTAAAATGC+AGG | - | chr6_1:10541878-10541897 | Msa0874730:intron | 30.0% | |
| TTGAATGTAATCACATGTGT+CGG | + | chr6_1:10542177-10542196 | None:intergenic | 30.0% | |
| TTGAAAAACAATGGAGTTGA+TGG | + | chr6_1:10542449-10542468 | None:intergenic | 30.0% | |
| ! | CTTCTCTAAAAGGATCATAA+AGG | + | chr6_1:10542475-10542494 | None:intergenic | 30.0% |
| !! | CTTTATGATCCTTTTAGAGA+AGG | - | chr6_1:10542473-10542492 | Msa0874730:intron | 30.0% |
| !!! | GCACTACTGATGTTTTTTTA+CGG | - | chr6_1:10542661-10542680 | Msa0874730:intron | 30.0% |
| GTGCATGATATTTAAACTCT+TGG | - | chr6_1:10543394-10543413 | Msa0874730:intron | 30.0% | |
| ! | AGTATTTGTGTTGATGCATA+AGG | - | chr6_1:10543440-10543459 | Msa0874730:intron | 30.0% |
| ! | CTTTGCTATGAAAGATATAG+GGG | + | chr6_1:10544000-10544019 | None:intergenic | 30.0% |
| ! | GCTTTGCTATGAAAGATATA+GGG | + | chr6_1:10544001-10544020 | None:intergenic | 30.0% |
| ! | TGCTTTGCTATGAAAGATAT+AGG | + | chr6_1:10544002-10544021 | None:intergenic | 30.0% |
| !! | AGAGCAAGATTTTGGAAAAA+TGG | + | chr6_1:10544088-10544107 | None:intergenic | 30.0% |
| !!! | AAGTTTTTCCTTGACTTGTT+TGG | + | chr6_1:10544155-10544174 | None:intergenic | 30.0% |
| AAACAAGTCAAGGAAAAACT+TGG | - | chr6_1:10544154-10544173 | Msa0874730:CDS | 30.0% | |
| TTGGTTTAGAAGTTCTCATT+GGG | + | chr6_1:10544271-10544290 | None:intergenic | 30.0% | |
| ! | ATTGGTTTAGAAGTTCTCAT+TGG | + | chr6_1:10544272-10544291 | None:intergenic | 30.0% |
| ACAAAGGTTACCAAATCTCA+CGG | - | chr6_1:10541061-10541080 | Msa0874730:three_prime_UTR | 35.0% | |
| ! | GGTAACTAAGACTTGTTCAA+AGG | + | chr6_1:10541100-10541119 | None:intergenic | 35.0% |
| GTGTGTGAAGAAATATAAGG+GGG | + | chr6_1:10541206-10541225 | None:intergenic | 35.0% | |
| GGAGTGTGTGAAGAAATATA+AGG | + | chr6_1:10541209-10541228 | None:intergenic | 35.0% | |
| !! | TCAAGTTGATCTTTCAATGG+AGG | + | chr6_1:10541338-10541357 | None:intergenic | 35.0% |
| ACATTGTGATTCCTACCATA+AGG | - | chr6_1:10541357-10541376 | Msa0874730:CDS | 35.0% | |
| AAATCAAGGTTCCTTATGGT+AGG | + | chr6_1:10541371-10541390 | None:intergenic | 35.0% | |
| CAAGAAATCAAGGTTCCTTA+TGG | + | chr6_1:10541375-10541394 | None:intergenic | 35.0% | |
| CATAAGGAACCTTGATTTCT+TGG | - | chr6_1:10541373-10541392 | Msa0874730:CDS | 35.0% | |
| ACCTTGATTTCTTGGAAATG+TGG | - | chr6_1:10541381-10541400 | Msa0874730:CDS | 35.0% | |
| TCCACATTTCCAAGAAATCA+AGG | + | chr6_1:10541385-10541404 | None:intergenic | 35.0% | |
| TTGATTTCTTGGAAATGTGG+AGG | - | chr6_1:10541384-10541403 | Msa0874730:CDS | 35.0% | |
| AAAACTATTAAGGTTCCACC+TGG | - | chr6_1:10541458-10541477 | Msa0874730:CDS | 35.0% | |
| AGTTCATAATCAAAACCAGG+TGG | + | chr6_1:10541476-10541495 | None:intergenic | 35.0% | |
| TTAATAAGCTTCTTGGTCCT+AGG | - | chr6_1:10541513-10541532 | Msa0874730:CDS | 35.0% | |
| TAATAAGCTTCTTGGTCCTA+GGG | - | chr6_1:10541514-10541533 | Msa0874730:CDS | 35.0% | |
| GTATGTAACAATCCTCTTCA+AGG | - | chr6_1:10542060-10542079 | Msa0874730:CDS | 35.0% | |
| ! | TCCTCTTCAAGGAGATATTT+TGG | - | chr6_1:10542071-10542090 | Msa0874730:CDS | 35.0% |
| ACCAAAATATCTCCTTGAAG+AGG | + | chr6_1:10542075-10542094 | None:intergenic | 35.0% | |
| CGTTATAACACTTCGATTGA+AGG | - | chr6_1:10542131-10542150 | Msa0874730:CDS | 35.0% | |
| ATGTGATTACATTCAATCGC+TGG | - | chr6_1:10542181-10542200 | Msa0874730:intron | 35.0% | |
| TAAAACCAATGGAACGACTA+AGG | + | chr6_1:10542237-10542256 | None:intergenic | 35.0% | |
| !! | ATGTACTTTTTGTGTGGCTT+AGG | - | chr6_1:10542358-10542377 | Msa0874730:intron | 35.0% |
| ! | TTGTTTTCCAGATGGATCAT+TGG | + | chr6_1:10542387-10542406 | None:intergenic | 35.0% |
| !!! | GCATTGATTTGTTTTCCAGA+TGG | + | chr6_1:10542395-10542414 | None:intergenic | 35.0% |
| AAATCAGCACCTTCTCTAAA+AGG | + | chr6_1:10542485-10542504 | None:intergenic | 35.0% | |
| AAGAGAGAAGAGAGAGAAAA+TGG | - | chr6_1:10542818-10542837 | Msa0874730:intron | 35.0% | |
| TTAAAGGAGAAAGACTTGTG+TGG | + | chr6_1:10542906-10542925 | None:intergenic | 35.0% | |
| ATGTTAGGAACACTCACAAT+CGG | - | chr6_1:10543158-10543177 | Msa0874730:CDS | 35.0% | |
| GGAACATTATTTCCAATGTG+TGG | - | chr6_1:10543493-10543512 | Msa0874730:intron | 35.0% | |
| ! | ATTGGACCAGCTATGTATTT+TGG | - | chr6_1:10543544-10543563 | Msa0874730:intron | 35.0% |
| ATGAGACCAAAATACATAGC+TGG | + | chr6_1:10543553-10543572 | None:intergenic | 35.0% | |
| !!! | AGCTATGTATTTTGGTCTCA+TGG | - | chr6_1:10543552-10543571 | Msa0874730:intron | 35.0% |
| !!! | GCTATGTATTTTGGTCTCAT+GGG | - | chr6_1:10543553-10543572 | Msa0874730:intron | 35.0% |
| ATGTCATCATAACGTCCAAT+TGG | + | chr6_1:10543589-10543608 | None:intergenic | 35.0% | |
| AACATGTCTTCAATCAGAAG+TGG | + | chr6_1:10543698-10543717 | None:intergenic | 35.0% | |
| TTCTGATTGAAGACATGTTC+TGG | - | chr6_1:10543699-10543718 | Msa0874730:intron | 35.0% | |
| TTGTTCATGATGAATTGGTC+AGG | - | chr6_1:10543934-10543953 | Msa0874730:intron | 35.0% | |
| TCAGGTAATCTGTGATCATT+TGG | - | chr6_1:10543952-10543971 | Msa0874730:intron | 35.0% | |
| CAGGTAATCTGTGATCATTT+GGG | - | chr6_1:10543953-10543972 | Msa0874730:intron | 35.0% | |
| CTTTCCTTAGGTTCACAAAT+GGG | + | chr6_1:10544030-10544049 | None:intergenic | 35.0% | |
| TCTTTCCTTAGGTTCACAAA+TGG | + | chr6_1:10544031-10544050 | None:intergenic | 35.0% | |
| ! | AACCTAAGGAAAGAGTACAA+AGG | - | chr6_1:10544037-10544056 | Msa0874730:CDS | 35.0% |
| ! | AAGAGTACAAAGGCATATTC+TGG | - | chr6_1:10544047-10544066 | Msa0874730:CDS | 35.0% |
| !! | CTTTTGGAAGAGCAAGATTT+TGG | + | chr6_1:10544096-10544115 | None:intergenic | 35.0% |
| ! | TGAACAGTTGTGCATTCTTT+TGG | + | chr6_1:10544112-10544131 | None:intergenic | 35.0% |
| TGAAATGTCCAAACAAGTCA+AGG | - | chr6_1:10544144-10544163 | Msa0874730:CDS | 35.0% | |
| TCTGCAAGCTTGTCAAAATA+AGG | + | chr6_1:10544190-10544209 | None:intergenic | 35.0% | |
| !!! | TGGGTTAAGCTTTTTTAGCA+GGG | + | chr6_1:10544252-10544271 | None:intergenic | 35.0% |
| !!! | TTGGGTTAAGCTTTTTTAGC+AGG | + | chr6_1:10544253-10544272 | None:intergenic | 35.0% |
| GAGAACTTCTAAACCAATCT+TGG | - | chr6_1:10544274-10544293 | Msa0874730:exon | 35.0% | |
| TGAGTGCTAGAGATGATTAT+TGG | - | chr6_1:10544493-10544512 | Msa0874730:five_prime_UTR | 35.0% | |
| ! | GATTTGGTAACCTTTGTGGA+TGG | + | chr6_1:10541058-10541077 | None:intergenic | 40.0% |
| ! | GTGAGATTTGGTAACCTTTG+TGG | + | chr6_1:10541062-10541081 | None:intergenic | 40.0% |
| ! | AGACTTGTTCAAAGGTTGTG+TGG | + | chr6_1:10541092-10541111 | None:intergenic | 40.0% |
| TAAGAAATCGGCACTAGTGT+GGG | + | chr6_1:10541152-10541171 | None:intergenic | 40.0% | |
| ATATAAGGGGGTGAGAATAG+TGG | + | chr6_1:10541194-10541213 | None:intergenic | 40.0% | |
| ! | CTCTCGCTTTATTGCAACAA+TGG | - | chr6_1:10541301-10541320 | Msa0874730:three_prime_UTR | 40.0% |
| AATGAAATGCAAGAAGCCCT+AGG | + | chr6_1:10541533-10541552 | None:intergenic | 40.0% | |
| GGCTTCTTGCATTTCATTCA+AGG | - | chr6_1:10541535-10541554 | Msa0874730:CDS | 40.0% | |
| ! | ATGTCGTTGCTTTGGTTACA+TGG | - | chr6_1:10541565-10541584 | Msa0874730:CDS | 40.0% |
| CACAATGAGGCCATGAAATA+TGG | + | chr6_1:10541762-10541781 | None:intergenic | 40.0% | |
| ! | CGCAATTTAAAACCGTGATC+CGG | + | chr6_1:10541837-10541856 | None:intergenic | 40.0% |
| !!! | CGGATCACGGTTTTAAATTG+CGG | - | chr6_1:10541835-10541854 | Msa0874730:intron | 40.0% |
| !!! | ACGGTTTTAAATTGCGGTTG+TGG | - | chr6_1:10541841-10541860 | Msa0874730:intron | 40.0% |
| !! | TCAATCGCTGGTTCTATTGA+AGG | - | chr6_1:10542193-10542212 | Msa0874730:intron | 40.0% |
| !! | TATTGAAGGAGTGTTCAGTG+AGG | - | chr6_1:10542207-10542226 | Msa0874730:intron | 40.0% |
| !! | ATGGAGTTGATGGACACAAA+AGG | + | chr6_1:10542439-10542458 | None:intergenic | 40.0% |
| !! | TACCCTTTTAGTCTTCGTGA+AGG | - | chr6_1:10542515-10542534 | Msa0874730:intron | 40.0% |
| CACCTTCACGAAGACTAAAA+GGG | + | chr6_1:10542520-10542539 | None:intergenic | 40.0% | |
| ACACCTTCACGAAGACTAAA+AGG | + | chr6_1:10542521-10542540 | None:intergenic | 40.0% | |
| GTCCATGAGAAATAGCTGTT+GGG | + | chr6_1:10542544-10542563 | None:intergenic | 40.0% | |
| AGTCCATGAGAAATAGCTGT+TGG | + | chr6_1:10542545-10542564 | None:intergenic | 40.0% | |
| !! | CAGCTATTTCTCATGGACTT+TGG | - | chr6_1:10542546-10542565 | Msa0874730:intron | 40.0% |
| !! | TGAGTAGGAGCATCATAATC+TGG | + | chr6_1:10542581-10542600 | None:intergenic | 40.0% |
| !!! | ACGGTTTTAAATAGCGGTCA+CGG | - | chr6_1:10542680-10542699 | Msa0874730:intron | 40.0% |
| GAAAATACTTGTGTGGACCA+GGG | - | chr6_1:10542737-10542756 | Msa0874730:intron | 40.0% | |
| TGTGGTCACAACCAAAGAAA+TGG | - | chr6_1:10542774-10542793 | Msa0874730:intron | 40.0% | |
| GTGGTCACAACCAAAGAAAT+GGG | - | chr6_1:10542775-10542794 | Msa0874730:intron | 40.0% | |
| TCTCTTCTCTCCCATTTCTT+TGG | + | chr6_1:10542788-10542807 | None:intergenic | 40.0% | |
| ! | GTGTTGATGCATAAGGTATG+TGG | - | chr6_1:10543447-10543466 | Msa0874730:intron | 40.0% |
| ACTGTTCTGACCATACCAAA+AGG | - | chr6_1:10543472-10543491 | Msa0874730:intron | 40.0% | |
| TCCAATGTGTGGAATGAACT+TGG | - | chr6_1:10543504-10543523 | Msa0874730:intron | 40.0% | |
| GCATTTGATCGTGATCTGAT+TGG | - | chr6_1:10543526-10543545 | Msa0874730:intron | 40.0% | |
| !!! | TATTTTGGTCTCATGGGAGA+TGG | - | chr6_1:10543559-10543578 | Msa0874730:intron | 40.0% |
| TTGGACGTTATGATGACATG+TGG | - | chr6_1:10543590-10543609 | Msa0874730:intron | 40.0% | |
| TGGACGTTATGATGACATGT+GGG | - | chr6_1:10543591-10543610 | Msa0874730:intron | 40.0% | |
| !! | TCATAAGTGTCGAGTTGTGT+CGG | + | chr6_1:10543750-10543769 | None:intergenic | 40.0% |
| ACATACACTAGACACGATAC+TGG | + | chr6_1:10543827-10543846 | None:intergenic | 40.0% | |
| ! | ATCTGTGATCATTTGGGACT+TGG | - | chr6_1:10543959-10543978 | Msa0874730:intron | 40.0% |
| GTAACCCATTTGTGAACCTA+AGG | - | chr6_1:10544023-10544042 | Msa0874730:CDS | 40.0% | |
| TGCCTTTGTACTCTTTCCTT+AGG | + | chr6_1:10544042-10544061 | None:intergenic | 40.0% | |
| AAGAAATCGGCACTAGTGTG+GGG | + | chr6_1:10541151-10541170 | None:intergenic | 45.0% | |
| CTAAGAAATCGGCACTAGTG+TGG | + | chr6_1:10541153-10541172 | None:intergenic | 45.0% | |
| !! | CACACTAGTGCCGATTTCTT+AGG | - | chr6_1:10541151-10541170 | Msa0874730:three_prime_UTR | 45.0% |
| ACACTGCACGCCTTTACATT+AGG | - | chr6_1:10541866-10541885 | Msa0874730:intron | 45.0% | |
| CACTGCACGCCTTTACATTA+GGG | - | chr6_1:10541867-10541886 | Msa0874730:intron | 45.0% | |
| GGGTAAAATGCAGGCAAATG+TGG | - | chr6_1:10541887-10541906 | Msa0874730:intron | 45.0% | |
| GGCAAATGTGGTCGTATATG+TGG | - | chr6_1:10541899-10541918 | Msa0874730:intron | 45.0% | |
| GTCGTATATGTGGTTGCGAA+CGG | - | chr6_1:10541909-10541928 | Msa0874730:intron | 45.0% | |
| TCGTATATGTGGTTGCGAAC+GGG | - | chr6_1:10541910-10541929 | Msa0874730:intron | 45.0% | |
| ACCAATGGAACGACTAAGGA+GGG | + | chr6_1:10542233-10542252 | None:intergenic | 45.0% | |
| AACCAATGGAACGACTAAGG+AGG | + | chr6_1:10542234-10542253 | None:intergenic | 45.0% | |
| TAGGTTGCCAATGATCCATC+TGG | - | chr6_1:10542377-10542396 | Msa0874730:intron | 45.0% | |
| !!! | GAAGGTGCTGATTTTGTTCG+TGG | - | chr6_1:10542491-10542510 | Msa0874730:intron | 45.0% |
| !! | GTCCCAACAGCTATTTCTCA+TGG | - | chr6_1:10542539-10542558 | Msa0874730:intron | 45.0% |
| GGAAAATACTTGTGTGGACC+AGG | - | chr6_1:10542736-10542755 | Msa0874730:intron | 45.0% | |
| TGTGACCACACAATGGAGTT+TGG | + | chr6_1:10542764-10542783 | None:intergenic | 45.0% | |
| CTTTGGTTGTGACCACACAA+TGG | + | chr6_1:10542771-10542790 | None:intergenic | 45.0% | |
| TGTGACCAAACCCAATTGTG+TGG | - | chr6_1:10542873-10542892 | Msa0874730:intron | 45.0% | |
| GCCAAGTTCATTCCACACAT+TGG | + | chr6_1:10543508-10543527 | None:intergenic | 45.0% | |
| CTACTCGAATCTACGTTGCA+CGG | - | chr6_1:10543672-10543691 | Msa0874730:intron | 45.0% | |
| TTGGGACTTGGAATCAAGAC+TGG | - | chr6_1:10543971-10543990 | Msa0874730:intron | 45.0% | |
| ! | GTACAAAGGCATATTCTGGC+AGG | - | chr6_1:10544051-10544070 | Msa0874730:CDS | 45.0% |
| TGACAAGCTTGCAGATGCTA+TGG | - | chr6_1:10544195-10544214 | Msa0874730:CDS | 45.0% | |
| TTGCAGATGCTATGGTCACT+TGG | - | chr6_1:10544203-10544222 | Msa0874730:CDS | 45.0% | |
| TGGTCACTTGGATTGAAGCT+TGG | - | chr6_1:10544215-10544234 | Msa0874730:CDS | 45.0% | |
| GGTCACTTGGATTGAAGCTT+GGG | - | chr6_1:10544216-10544235 | Msa0874730:CDS | 45.0% | |
| !!! | TATTTATTTATTTTTTTCTT+AGG | - | chr6_1:10543019-10543038 | Msa0874730:CDS | 5.0% |
| !! | TGTGGTGTTGCCGTGAGATT+TGG | + | chr6_1:10541074-10541093 | None:intergenic | 50.0% |
| GACTCTGCATGTCGTTGCTT+TGG | - | chr6_1:10541557-10541576 | Msa0874730:CDS | 50.0% | |
| GGATATTGCGTTCCGGATCA+CGG | - | chr6_1:10541822-10541841 | Msa0874730:intron | 50.0% | |
| TGTGGTTGCGAACGGGAATT+CGG | - | chr6_1:10541917-10541936 | Msa0874730:intron | 50.0% | |
| AGAGGCTTGACAAGCTGAGT+AGG | + | chr6_1:10542596-10542615 | None:intergenic | 50.0% | |
| AGCTTGTCAAGCCTCTTGAG+AGG | - | chr6_1:10542600-10542619 | Msa0874730:intron | 50.0% | |
| AGCCTCTTGAGAGGAACACT+AGG | - | chr6_1:10542609-10542628 | Msa0874730:intron | 50.0% | |
| GACCTAGTGTTCCTCTCAAG+AGG | + | chr6_1:10542614-10542633 | None:intergenic | 50.0% | |
| ACACAATGGAGTTTGGTCCC+TGG | + | chr6_1:10542757-10542776 | None:intergenic | 50.0% | |
| AGGGACCAAACTCCATTGTG+TGG | - | chr6_1:10542756-10542775 | Msa0874730:intron | 50.0% | |
| CAGGACCACACAATTGGGTT+TGG | + | chr6_1:10542881-10542900 | None:intergenic | 50.0% | |
| CAAACCCAATTGTGTGGTCC+TGG | - | chr6_1:10542879-10542898 | Msa0874730:intron | 50.0% | |
| TGGACCAGGACCACACAATT+GGG | + | chr6_1:10542886-10542905 | None:intergenic | 50.0% | |
| GAGAAAGACTTGTGTGGACC+AGG | + | chr6_1:10542900-10542919 | None:intergenic | 50.0% | |
| ATGGGAGATGGTCAGCCAAT+TGG | - | chr6_1:10543571-10543590 | Msa0874730:intron | 50.0% | |
| CGTTATGATGACATGTGGGC+TGG | - | chr6_1:10543595-10543614 | Msa0874730:intron | 50.0% | |
| GCCCTCCTTAGTCGTTCCAT+TGG | - | chr6_1:10542229-10542248 | Msa0874730:intron | 55.0% | |
| GTGGACCAGGACCACACAAT+TGG | + | chr6_1:10542887-10542906 | None:intergenic | 55.0% | |
| !! | ATGATGACATGTGGGCTGGC+TGG | - | chr6_1:10543599-10543618 | Msa0874730:intron | 55.0% |
| !! | GTGGGCTGGCTGGTGCTGCA+AGG | - | chr6_1:10543609-10543628 | Msa0874730:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 10541052 | 10544560 | 10541052 | ID=Msa0874730;Name=Msa0874730 |
| chr6_1 | mRNA | 10541052 | 10544560 | 10541052 | ID=Msa0874730-mRNA-1;Parent=Msa0874730;Name=Msa0874730-mRNA-1;_AED=0.09;_eAED=0.09;_QI=268|1|1|1|1|1|4|293|347 |
| chr6_1 | exon | 10541052 | 10541656 | 10541052 | ID=Msa0874730-mRNA-1:exon:3272;Parent=Msa0874730-mRNA-1 |
| chr6_1 | exon | 10541982 | 10542150 | 10541982 | ID=Msa0874730-mRNA-1:exon:3271;Parent=Msa0874730-mRNA-1 |
| chr6_1 | exon | 10542982 | 10543232 | 10542982 | ID=Msa0874730-mRNA-1:exon:3270;Parent=Msa0874730-mRNA-1 |
| chr6_1 | exon | 10543981 | 10544560 | 10543981 | ID=Msa0874730-mRNA-1:exon:3269;Parent=Msa0874730-mRNA-1 |
| chr6_1 | five_prime_UTR | 10544293 | 10544560 | 10544293 | ID=Msa0874730-mRNA-1:five_prime_utr;Parent=Msa0874730-mRNA-1 |
| chr6_1 | CDS | 10543981 | 10544292 | 10543981 | ID=Msa0874730-mRNA-1:cds;Parent=Msa0874730-mRNA-1 |
| chr6_1 | CDS | 10542982 | 10543232 | 10542982 | ID=Msa0874730-mRNA-1:cds;Parent=Msa0874730-mRNA-1 |
| chr6_1 | CDS | 10541982 | 10542150 | 10541982 | ID=Msa0874730-mRNA-1:cds;Parent=Msa0874730-mRNA-1 |
| chr6_1 | CDS | 10541345 | 10541656 | 10541345 | ID=Msa0874730-mRNA-1:cds;Parent=Msa0874730-mRNA-1 |
| chr6_1 | three_prime_UTR | 10541052 | 10541344 | 10541052 | ID=Msa0874730-mRNA-1:three_prime_utr;Parent=Msa0874730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
