Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0976380 | XP_013451101.1 | 98.559 | 347 | 5 | 0 | 1 | 347 | 1 | 347 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0976380 | sp|Q8H8T0|RGP1_ORYSJ | 86.337 | 344 | 47 | 0 | 4 | 347 | 14 | 357 | 0.0 | 645 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0976380 | A0A072U6Y0 | 98.559 | 347 | 5 | 0 | 1 | 347 | 1 | 347 | 0.0 | 712 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0976380 | 0.834828 | 2.391489e-56 | -8.615850e-47 |
| Msa0018920 | Msa0976380 | 0.815182 | 1.053852e-51 | -8.615850e-47 |
| Msa0027800 | Msa0976380 | 0.809484 | 1.849602e-50 | -8.615850e-47 |
| Msa0030070 | Msa0976380 | 0.821230 | 4.510165e-53 | -8.615850e-47 |
| Msa0032980 | Msa0976380 | 0.832518 | 9.030938e-56 | -8.615850e-47 |
| Msa0050150 | Msa0976380 | 0.832192 | 1.087834e-55 | -8.615850e-47 |
| Msa0050530 | Msa0976380 | 0.829496 | 4.984459e-55 | -8.615850e-47 |
| Msa0078130 | Msa0976380 | 0.811988 | 5.315174e-51 | -8.615850e-47 |
| Msa0080370 | Msa0976380 | 0.837031 | 6.604515e-57 | -8.615850e-47 |
| Msa0080440 | Msa0976380 | 0.817249 | 3.637556e-52 | -8.615850e-47 |
| Msa0090440 | Msa0976380 | 0.819423 | 1.170694e-52 | -8.615850e-47 |
| Msa0091350 | Msa0976380 | 0.844065 | 9.524244e-59 | -8.615850e-47 |
| Msa0094180 | Msa0976380 | 0.830957 | 2.190985e-55 | -8.615850e-47 |
| Msa0100600 | Msa0976380 | 0.839681 | 1.370117e-57 | -8.615850e-47 |
| Msa0100890 | Msa0976380 | 0.834862 | 2.344341e-56 | -8.615850e-47 |
| Msa0605520 | Msa0976380 | 0.814174 | 1.762479e-51 | -8.615850e-47 |
| Msa0607800 | Msa0976380 | 0.837561 | 4.834473e-57 | -8.615850e-47 |
| Msa0615630 | Msa0976380 | 0.800244 | 1.578767e-48 | -8.615850e-47 |
| Msa0618990 | Msa0976380 | 0.810056 | 1.393225e-50 | -8.615850e-47 |
| Msa0620500 | Msa0976380 | 0.840136 | 1.042654e-57 | -8.615850e-47 |
| Msa0620510 | Msa0976380 | 0.821820 | 3.294846e-53 | -8.615850e-47 |
| Msa0625620 | Msa0976380 | 0.811504 | 6.773118e-51 | -8.615850e-47 |
| Msa0630440 | Msa0976380 | 0.825731 | 3.995470e-54 | -8.615850e-47 |
| Msa0640800 | Msa0976380 | 0.845151 | 4.855199e-59 | -8.615850e-47 |
| Msa0647440 | Msa0976380 | 0.844856 | 5.832504e-59 | -8.615850e-47 |
| Msa0648040 | Msa0976380 | 0.847412 | 1.175681e-59 | -8.615850e-47 |
| Msa0648760 | Msa0976380 | 0.814901 | 1.216847e-51 | -8.615850e-47 |
| Msa0654740 | Msa0976380 | 0.800814 | 1.207724e-48 | -8.615850e-47 |
| Msa0657210 | Msa0976380 | 0.821729 | 3.458866e-53 | -8.615850e-47 |
| Msa0659200 | Msa0976380 | 0.810385 | 1.183596e-50 | -8.615850e-47 |
| Msa0663290 | Msa0976380 | 0.815466 | 9.110561e-52 | -8.615850e-47 |
| Msa0664070 | Msa0976380 | 0.818503 | 1.895226e-52 | -8.615850e-47 |
| Msa0688380 | Msa0976380 | 0.851186 | 1.045295e-60 | -8.615850e-47 |
| Msa0689830 | Msa0976380 | 0.860997 | 1.397507e-63 | -8.615850e-47 |
| Msa0690320 | Msa0976380 | 0.822368 | 2.458709e-53 | -8.615850e-47 |
| Msa0690570 | Msa0976380 | 0.824565 | 7.535486e-54 | -8.615850e-47 |
| Msa0690740 | Msa0976380 | 0.855219 | 7.305483e-62 | -8.615850e-47 |
| Msa0701250 | Msa0976380 | 0.812625 | 3.859018e-51 | -8.615850e-47 |
| Msa0705180 | Msa0976380 | 0.809402 | 1.925733e-50 | -8.615850e-47 |
| Msa0707260 | Msa0976380 | 0.862159 | 6.173401e-64 | -8.615850e-47 |
| Msa0708980 | Msa0976380 | 0.800523 | 1.385020e-48 | -8.615850e-47 |
| Msa0713080 | Msa0976380 | 0.818194 | 2.226371e-52 | -8.615850e-47 |
| Msa0714520 | Msa0976380 | 0.808292 | 3.326876e-50 | -8.615850e-47 |
| Msa0717900 | Msa0976380 | 0.835812 | 1.349621e-56 | -8.615850e-47 |
| Msa0720280 | Msa0976380 | 0.840164 | 1.025192e-57 | -8.615850e-47 |
| Msa0731780 | Msa0976380 | 0.818627 | 1.775553e-52 | -8.615850e-47 |
| Msa0737130 | Msa0976380 | 0.802173 | 6.360124e-49 | -8.615850e-47 |
| Msa0751200 | Msa0976380 | 0.805067 | 1.596493e-49 | -8.615850e-47 |
| Msa0751250 | Msa0976380 | 0.801107 | 1.052208e-48 | -8.615850e-47 |
| Msa0751720 | Msa0976380 | 0.807672 | 4.508202e-50 | -8.615850e-47 |
| Msa0771910 | Msa0976380 | 0.822035 | 2.937188e-53 | -8.615850e-47 |
| Msa0803140 | Msa0976380 | 0.839715 | 1.342558e-57 | -8.615850e-47 |
| Msa0816080 | Msa0976380 | 0.848995 | 4.295883e-60 | -8.615850e-47 |
| Msa0816230 | Msa0976380 | 0.817422 | 3.325163e-52 | -8.615850e-47 |
| Msa0831620 | Msa0976380 | 0.809816 | 1.569268e-50 | -8.615850e-47 |
| Msa0831820 | Msa0976380 | 0.818153 | 2.273872e-52 | -8.615850e-47 |
| Msa0837680 | Msa0976380 | 0.855920 | 4.562869e-62 | -8.615850e-47 |
| Msa0841500 | Msa0976380 | 0.825780 | 3.889092e-54 | -8.615850e-47 |
| Msa0125590 | Msa0976380 | 0.839306 | 1.714589e-57 | -8.615850e-47 |
| Msa0127340 | Msa0976380 | 0.831830 | 1.336677e-55 | -8.615850e-47 |
| Msa0131810 | Msa0976380 | 0.829593 | 4.720778e-55 | -8.615850e-47 |
| Msa0165830 | Msa0976380 | 0.815996 | 6.942688e-52 | -8.615850e-47 |
| Msa0168380 | Msa0976380 | 0.826105 | 3.255875e-54 | -8.615850e-47 |
| Msa0170070 | Msa0976380 | 0.820213 | 7.725384e-53 | -8.615850e-47 |
| Msa0173250 | Msa0976380 | 0.830014 | 3.727654e-55 | -8.615850e-47 |
| Msa0186180 | Msa0976380 | 0.820550 | 6.465533e-53 | -8.615850e-47 |
| Msa0186360 | Msa0976380 | 0.814469 | 1.516782e-51 | -8.615850e-47 |
| Msa0187040 | Msa0976380 | 0.807692 | 4.465059e-50 | -8.615850e-47 |
| Msa0204970 | Msa0976380 | 0.841630 | 4.229179e-58 | -8.615850e-47 |
| Msa0225800 | Msa0976380 | 0.816959 | 4.225017e-52 | -8.615850e-47 |
| Msa0364680 | Msa0976380 | 0.803845 | 2.869975e-49 | -8.615850e-47 |
| Msa0368920 | Msa0976380 | 0.813484 | 2.500710e-51 | -8.615850e-47 |
| Msa0373170 | Msa0976380 | 0.854583 | 1.117420e-61 | -8.615850e-47 |
| Msa0373590 | Msa0976380 | 0.820010 | 8.595710e-53 | -8.615850e-47 |
| Msa0382230 | Msa0976380 | 0.824358 | 8.431021e-54 | -8.615850e-47 |
| Msa0388250 | Msa0976380 | 0.806015 | 1.009839e-49 | -8.615850e-47 |
| Msa0388620 | Msa0976380 | 0.829194 | 5.900901e-55 | -8.615850e-47 |
| Msa0401060 | Msa0976380 | 0.822543 | 2.239756e-53 | -8.615850e-47 |
| Msa0413170 | Msa0976380 | 0.812940 | 3.291394e-51 | -8.615850e-47 |
| Msa0416210 | Msa0976380 | 0.841450 | 4.716369e-58 | -8.615850e-47 |
| Msa0421750 | Msa0976380 | 0.850516 | 1.614806e-60 | -8.615850e-47 |
| Msa0422820 | Msa0976380 | 0.804442 | 2.155752e-49 | -8.615850e-47 |
| Msa0429970 | Msa0976380 | 0.806951 | 6.410167e-50 | -8.615850e-47 |
| Msa0433630 | Msa0976380 | 0.848331 | 6.562024e-60 | -8.615850e-47 |
| Msa0433760 | Msa0976380 | 0.807753 | 4.332564e-50 | -8.615850e-47 |
| Msa0456670 | Msa0976380 | 0.800022 | 1.751166e-48 | -8.615850e-47 |
| Msa0458100 | Msa0976380 | 0.821611 | 3.682950e-53 | -8.615850e-47 |
| Msa0467690 | Msa0976380 | 0.858211 | 9.627043e-63 | -8.615850e-47 |
| Msa0468620 | Msa0976380 | 0.803578 | 3.260807e-49 | -8.615850e-47 |
| Msa0477480 | Msa0976380 | 0.826666 | 2.393726e-54 | -8.615850e-47 |
| Msa0477630 | Msa0976380 | 0.801980 | 6.968724e-49 | -8.615850e-47 |
| Msa0249870 | Msa0976380 | 0.840512 | 8.315911e-58 | -8.615850e-47 |
| Msa0260570 | Msa0976380 | 0.831653 | 1.477965e-55 | -8.615850e-47 |
| Msa0260630 | Msa0976380 | 0.821011 | 5.066116e-53 | -8.615850e-47 |
| Msa0281540 | Msa0976380 | 0.827796 | 1.283193e-54 | -8.615850e-47 |
| Msa0288400 | Msa0976380 | 0.812687 | 3.740512e-51 | -8.615850e-47 |
| Msa0320580 | Msa0976380 | 0.821634 | 3.638577e-53 | -8.615850e-47 |
| Msa0342220 | Msa0976380 | 0.822538 | 2.245019e-53 | -8.615850e-47 |
| Msa0344110 | Msa0976380 | 0.826739 | 2.299771e-54 | -8.615850e-47 |
| Msa0349550 | Msa0976380 | 0.813476 | 2.510725e-51 | -8.615850e-47 |
| Msa0504720 | Msa0976380 | 0.804410 | 2.189191e-49 | -8.615850e-47 |
| Msa0506750 | Msa0976380 | 0.803514 | 3.361202e-49 | -8.615850e-47 |
| Msa0514020 | Msa0976380 | 0.863873 | 1.824016e-64 | -8.615850e-47 |
| Msa0514500 | Msa0976380 | 0.804776 | 1.836536e-49 | -8.615850e-47 |
| Msa0518410 | Msa0976380 | 0.800578 | 1.349705e-48 | -8.615850e-47 |
| Msa0520680 | Msa0976380 | 0.821284 | 4.382155e-53 | -8.615850e-47 |
| Msa0521510 | Msa0976380 | 0.836473 | 9.168838e-57 | -8.615850e-47 |
| Msa0521530 | Msa0976380 | 0.833821 | 4.278397e-56 | -8.615850e-47 |
| Msa0521680 | Msa0976380 | 0.802695 | 4.966515e-49 | -8.615850e-47 |
| Msa0527850 | Msa0976380 | 0.833013 | 6.805611e-56 | -8.615850e-47 |
| Msa0541740 | Msa0976380 | 0.814600 | 1.418733e-51 | -8.615850e-47 |
| Msa0544410 | Msa0976380 | 0.831009 | 2.127404e-55 | -8.615850e-47 |
| Msa0544430 | Msa0976380 | 0.821551 | 3.802244e-53 | -8.615850e-47 |
| Msa0553750 | Msa0976380 | 0.853358 | 2.519069e-61 | -8.615850e-47 |
| Msa0554300 | Msa0976380 | 0.820639 | 6.169046e-53 | -8.615850e-47 |
| Msa0561560 | Msa0976380 | 0.808567 | 2.907303e-50 | -8.615850e-47 |
| Msa0572830 | Msa0976380 | 0.889123 | 3.210184e-73 | -8.615850e-47 |
| Msa0576330 | Msa0976380 | 0.805915 | 1.059932e-49 | -8.615850e-47 |
| Msa0582460 | Msa0976380 | 0.827193 | 1.790448e-54 | -8.615850e-47 |
| Msa0586200 | Msa0976380 | 0.831220 | 1.888466e-55 | -8.615850e-47 |
| Msa0846900 | Msa0976380 | 0.845862 | 3.116571e-59 | -8.615850e-47 |
| Msa0850600 | Msa0976380 | 0.801456 | 8.929885e-49 | -8.615850e-47 |
| Msa0856610 | Msa0976380 | 0.820103 | 8.186823e-53 | -8.615850e-47 |
| Msa0861440 | Msa0976380 | 0.846138 | 2.621950e-59 | -8.615850e-47 |
| Msa0874730 | Msa0976380 | 0.900800 | 5.095318e-78 | -8.615850e-47 |
| Msa0897790 | Msa0976380 | 0.809484 | 1.850000e-50 | -8.615850e-47 |
| Msa0900090 | Msa0976380 | 0.841884 | 3.625046e-58 | -8.615850e-47 |
| Msa0900760 | Msa0976380 | 0.809274 | 2.052077e-50 | -8.615850e-47 |
| Msa0926310 | Msa0976380 | 0.881267 | 2.766031e-70 | -8.615850e-47 |
| Msa0930040 | Msa0976380 | 0.807920 | 3.992120e-50 | -8.615850e-47 |
| Msa0931310 | Msa0976380 | 0.802666 | 5.033900e-49 | -8.615850e-47 |
| Msa0939830 | Msa0976380 | 0.876077 | 1.859795e-68 | -8.615850e-47 |
| Msa0945900 | Msa0976380 | 0.826137 | 3.199036e-54 | -8.615850e-47 |
| Msa0963370 | Msa0976380 | 0.803207 | 3.891191e-49 | -8.615850e-47 |
| Msa0965470 | Msa0976380 | 0.803577 | 3.262234e-49 | -8.615850e-47 |
| Msa0976380 | Msa1000780 | 0.866246 | 3.279844e-65 | -8.615850e-47 |
| Msa0976380 | Msa1008670 | 0.813718 | 2.220851e-51 | -8.615850e-47 |
| Msa0976380 | Msa1021560 | 0.834513 | 2.870377e-56 | -8.615850e-47 |
| Msa0976380 | Msa1034400 | 0.806772 | 6.991796e-50 | -8.615850e-47 |
| Msa0976380 | Msa1041370 | 0.829818 | 4.161204e-55 | -8.615850e-47 |
| Msa0976380 | Msa1050260 | 0.805238 | 1.469954e-49 | -8.615850e-47 |
| Msa0976380 | Msa1060900 | 0.807348 | 5.282025e-50 | -8.615850e-47 |
| Msa0976380 | Msa1071410 | 0.802126 | 6.505422e-49 | -8.615850e-47 |
| Msa0976380 | Msa1074150 | 0.806716 | 7.187323e-50 | -8.615850e-47 |
| Msa0976380 | Msa1076020 | 0.831911 | 1.275907e-55 | -8.615850e-47 |
| Msa0976380 | Msa1078860 | 0.811850 | 5.696303e-51 | -8.615850e-47 |
| Msa0976380 | Msa1078990 | 0.811530 | 6.685549e-51 | -8.615850e-47 |
| Msa0976380 | Msa1081270 | 0.829370 | 5.347371e-55 | -8.615850e-47 |
| Msa0976380 | Msa1083630 | 0.800082 | 1.703225e-48 | -8.615850e-47 |
| Msa0976380 | Msa1085680 | 0.805484 | 1.305726e-49 | -8.615850e-47 |
| Msa0976380 | Msa1098060 | 0.808880 | 2.491687e-50 | -8.615850e-47 |
| Msa0976380 | Msa1105540 | 0.808975 | 2.378477e-50 | -8.615850e-47 |
| Msa0976380 | Msa1106220 | 0.822326 | 2.514765e-53 | -8.615850e-47 |
| Msa0976380 | Msa1124210 | 0.826783 | 2.244901e-54 | -8.615850e-47 |
| Msa0976380 | Msa1144990 | 0.814105 | 1.824557e-51 | -8.615850e-47 |
| Msa0976380 | Msa1148630 | 0.812371 | 4.385099e-51 | -8.615850e-47 |
| Msa0976380 | Msa1148930 | 0.831640 | 1.488979e-55 | -8.615850e-47 |
| Msa0976380 | Msa1159590 | 0.818427 | 1.971086e-52 | -8.615850e-47 |
| Msa0976380 | Msa1163180 | 0.824327 | 8.571551e-54 | -8.615850e-47 |
| Msa0976380 | Msa1169170 | 0.801909 | 7.208770e-49 | -8.615850e-47 |
| Msa0976380 | Msa1169690 | 0.818843 | 1.586245e-52 | -8.615850e-47 |
| Msa0976380 | Msa1188340 | 0.836168 | 1.096230e-56 | -8.615850e-47 |
| Msa0976380 | Msa1191000 | 0.831117 | 2.002236e-55 | -8.615850e-47 |
| Msa0976380 | Msa1201780 | 0.851402 | 9.087208e-61 | -8.615850e-47 |
| Msa0976380 | Msa1206040 | 0.818923 | 1.521571e-52 | -8.615850e-47 |
| Msa0976380 | Msa1213830 | 0.826206 | 3.080220e-54 | -8.615850e-47 |
| Msa0976380 | Msa1214350 | 0.803630 | 3.180100e-49 | -8.615850e-47 |
| Msa0976380 | Msa1215980 | 0.841641 | 4.201515e-58 | -8.615850e-47 |
| Msa0976380 | Msa1215990 | 0.820113 | 8.141465e-53 | -8.615850e-47 |
| Msa0976380 | Msa1220580 | 0.804290 | 2.318780e-49 | -8.615850e-47 |
| Msa0976380 | Msa1226370 | 0.831199 | 1.910879e-55 | -8.615850e-47 |
| Msa0976380 | Msa1240940 | 0.848147 | 7.376366e-60 | -8.615850e-47 |
| Msa0976380 | Msa1244690 | 0.802710 | 4.930444e-49 | -8.615850e-47 |
| Msa0976380 | Msa1252790 | 0.814933 | 1.196977e-51 | -8.615850e-47 |
| Msa0976380 | Msa1254420 | 0.842668 | 2.247028e-58 | -8.615850e-47 |
| Msa0976380 | Msa1254540 | 0.826767 | 2.263821e-54 | -8.615850e-47 |
| Msa0976380 | Msa1263740 | 0.808771 | 2.629454e-50 | -8.615850e-47 |
| Msa0976380 | Msa1267930 | 0.811750 | 5.989913e-51 | -8.615850e-47 |
| Msa0976380 | Msa1279120 | 0.815130 | 1.082347e-51 | -8.615850e-47 |
| Msa0976380 | Msa1282300 | 0.850216 | 1.959732e-60 | -8.615850e-47 |
| Msa0976380 | Msa1294280 | 0.823035 | 1.719972e-53 | -8.615850e-47 |
| Msa0976380 | Msa1294460 | 0.834522 | 2.855375e-56 | -8.615850e-47 |
| Msa0976380 | Msa1294790 | 0.853960 | 1.690750e-61 | -8.615850e-47 |
| Msa0976380 | Msa1297070 | 0.821370 | 4.185783e-53 | -8.615850e-47 |
| Msa0976380 | Msa1300460 | 0.806079 | 9.792522e-50 | -8.615850e-47 |
| Msa0976380 | Msa1301820 | 0.818784 | 1.635858e-52 | -8.615850e-47 |
| Msa0976380 | Msa1301830 | 0.818117 | 2.317052e-52 | -8.615850e-47 |
| Msa0976380 | Msa1305920 | 0.811294 | 7.525171e-51 | -8.615850e-47 |
| Msa0976380 | Msa1321530 | 0.820972 | 5.171233e-53 | -8.615850e-47 |
| Msa0976380 | Msa1328870 | 0.811116 | 8.222639e-51 | -8.615850e-47 |
| Msa0976380 | Msa1332950 | 0.825603 | 4.283121e-54 | -8.615850e-47 |
| Msa0976380 | Msa1334560 | 0.812406 | 4.309183e-51 | -8.615850e-47 |
| Msa0976380 | Msa1339170 | 0.807000 | 6.258033e-50 | -8.615850e-47 |
| Msa0976380 | Msa1339230 | 0.842340 | 2.744872e-58 | -8.615850e-47 |
| Msa0976380 | Msa1372030 | 0.815053 | 1.125927e-51 | -8.615850e-47 |
| Msa0976380 | Msa1381470 | 0.802638 | 5.101415e-49 | -8.615850e-47 |
| Msa0976380 | Msa1387500 | 0.826455 | 2.688177e-54 | -8.615850e-47 |
| Msa0976380 | Msa1389820 | 0.848194 | 7.159445e-60 | -8.615850e-47 |
| Msa0976380 | Msa1393560 | 0.853021 | 3.145831e-61 | -8.615850e-47 |
| Msa0976380 | Msa1399190 | 0.863126 | 3.109544e-64 | -8.615850e-47 |
| Msa0976380 | Msa1402010 | 0.818800 | 1.622500e-52 | -8.615850e-47 |
| Msa0976380 | Msa1424370 | 0.800378 | 1.482654e-48 | -8.615850e-47 |
| Msa0976380 | Msa1424590 | 0.815569 | 8.643133e-52 | -8.615850e-47 |
| Msa0976380 | Msa1426320 | 0.856517 | 3.049214e-62 | -8.615850e-47 |
| Msa0976380 | Msa1431520 | 0.804155 | 2.474448e-49 | -8.615850e-47 |
| Msa0976380 | Msa1432520 | 0.823660 | 1.229060e-53 | -8.615850e-47 |
| Msa0976380 | Msa1435100 | 0.820727 | 5.887543e-53 | -8.615850e-47 |
| Msa0976380 | Msa1439730 | 0.823967 | 1.041146e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0976380 | MtrunA17_Chr6g0455451 | 98.559 | 347 | 5 | 0 | 1 | 347 | 1 | 347 | 0.0 | 712 |
| Msa0976380 | MtrunA17_Chr7g0219951 | 90.087 | 343 | 34 | 0 | 1 | 343 | 1 | 343 | 0.0 | 662 |
| Msa0976380 | MtrunA17_Chr5g0419801 | 87.536 | 345 | 40 | 1 | 1 | 342 | 1 | 345 | 0.0 | 642 |
| Msa0976380 | MtrunA17_Chr2g0308361 | 85.673 | 342 | 49 | 0 | 2 | 343 | 4 | 345 | 0.0 | 633 |
| Msa0976380 | MtrunA17_Chr7g0249031 | 49.412 | 340 | 166 | 4 | 10 | 344 | 9 | 347 | 3.22e-125 | 363 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0976380 | AT3G02230.1 | 88.012 | 342 | 41 | 0 | 6 | 347 | 16 | 357 | 0.0 | 643 |
| Msa0976380 | AT5G15650.1 | 86.880 | 343 | 45 | 0 | 5 | 347 | 15 | 357 | 0.0 | 640 |
| Msa0976380 | AT3G08900.1 | 82.799 | 343 | 59 | 0 | 5 | 347 | 11 | 353 | 0.0 | 621 |
| Msa0976380 | AT5G50750.1 | 77.101 | 345 | 79 | 0 | 2 | 346 | 8 | 352 | 0.0 | 582 |
| Msa0976380 | AT5G16510.2 | 48.680 | 341 | 169 | 3 | 9 | 344 | 8 | 347 | 1.97e-120 | 351 |
| Msa0976380 | AT5G16510.1 | 48.680 | 341 | 169 | 3 | 9 | 344 | 8 | 347 | 1.97e-120 | 351 |
Find 100 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAAGGAACCTTGATTTCT+TGG | 0.184256 | 6_4:-10361846 | Msa0976380:CDS |
| TATTGGACCTTATATCATTT+TGG | 0.203757 | 6_4:-10358914 | Msa0976380:three_prime_UTR |
| ATTGGACCAGCTATGTATTT+TGG | 0.233920 | 6_4:-10359869 | Msa0976380:CDS |
| GCTTTGCTATGAAAGATATA+AGG | 0.244086 | 6_4:+10359426 | None:intergenic |
| TTGATTATGAACTTTATAAT+AGG | 0.252799 | 6_4:-10361736 | Msa0976380:CDS |
| ACACCTTCACGAAGACTAAA+AGG | 0.265235 | 6_4:+10360702 | None:intergenic |
| AATGATATTAATAAGCTTCT+TGG | 0.286010 | 6_4:-10361713 | Msa0976380:CDS |
| ACATTGTGATTCCTACTATA+AGG | 0.293463 | 6_4:-10361862 | Msa0976380:CDS |
| AAATGATAAGGTTCAAAATA+TGG | 0.294723 | 6_4:+10361812 | None:intergenic |
| AAATCAGCACCTTCTCTAAA+AGG | 0.303616 | 6_4:+10360738 | None:intergenic |
| TGAACAGTTGTGCATTCTTT+TGG | 0.313245 | 6_4:+10359315 | None:intergenic |
| ATTGGAAATAATGTTCCTTT+TGG | 0.323828 | 6_4:+10359926 | None:intergenic |
| TCTGCAAGCTTGTCAAAATA+AGG | 0.337023 | 6_4:+10359237 | None:intergenic |
| ACAGGTAATCTGTGATCATT+TGG | 0.338050 | 6_4:-10359472 | Msa0976380:intron |
| GACAACTTCTAAACCAATCT+TGG | 0.341480 | 6_4:-10359150 | Msa0976380:three_prime_UTR |
| CACACTAGTGCCGATTTCTT+AGG | 0.352599 | 6_4:-10362068 | Msa0976380:five_prime_UTR |
| GACTCTGCATGTCGTTGCTT+TGG | 0.356660 | 6_4:-10361662 | Msa0976380:CDS |
| GGCTTCTTGCATTTCATTCA+AGG | 0.357909 | 6_4:-10361684 | Msa0976380:CDS |
| TGCCTTTGTACTCTTTCCTT+AGG | 0.366078 | 6_4:+10359385 | None:intergenic |
| CTTCTCTAAAAGGATCATAA+AGG | 0.369468 | 6_4:+10360748 | None:intergenic |
| TATTTGTAATTAACCAAGAT+TGG | 0.377120 | 6_4:+10359137 | None:intergenic |
| ATGTCGTTGCTTTGGTTACA+TGG | 0.386419 | 6_4:-10361654 | Msa0976380:CDS |
| ATCTGTGATCATTTGGGACT+TGG | 0.386651 | 6_4:-10359465 | Msa0976380:CDS |
| TGAGTGCTAGAGATGATTAT+TGG | 0.388255 | 6_4:-10358931 | Msa0976380:three_prime_UTR |
| AAGAGTACAAAGGCATATTC+TGG | 0.396965 | 6_4:-10359377 | Msa0976380:CDS |
| ATTGCTTCCAAAATGATATA+AGG | 0.402081 | 6_4:+10358907 | None:intergenic |
| CTTTGCTATGAAAGATATAA+GGG | 0.403277 | 6_4:+10359427 | None:intergenic |
| GGTCACTTGGATTGAAGCTT+GGG | 0.405282 | 6_4:-10359208 | Msa0976380:CDS |
| AAAGAGAGTTTGTTTATGAA+AGG | 0.406681 | 6_4:+10361981 | None:intergenic |
| TGTGGTGTTGCCGTGAGATT+TGG | 0.416322 | 6_4:+10362149 | None:intergenic |
| CAGCTATTTCTCATGGACTT+TGG | 0.419478 | 6_4:-10360674 | Msa0976380:CDS |
| GGAGTGTGTGAAGAAATATA+AGG | 0.422112 | 6_4:+10362013 | None:intergenic |
| TGTGAAAATGCCTAAGAAAT+CGG | 0.428284 | 6_4:+10362058 | None:intergenic |
| TTAATAAGCTTCTTGGTCCT+AGG | 0.431885 | 6_4:-10361706 | Msa0976380:CDS |
| ATTGGTTTAGAAGTTGTCAT+TGG | 0.437784 | 6_4:+10359155 | None:intergenic |
| GCATTTGATCGTGATCTGAT+TGG | 0.439539 | 6_4:-10359887 | Msa0976380:CDS |
| ATGGGAGATGGTCAGCCAAT+TGG | 0.441337 | 6_4:-10359842 | Msa0976380:CDS |
| GTGAGATTTGGTAACCTTTG+TGG | 0.448364 | 6_4:+10362161 | None:intergenic |
| GAGTGTGTGAAGAAATATAA+GGG | 0.450702 | 6_4:+10362014 | None:intergenic |
| CTTTCCTTAGGTTCACAAAT+GGG | 0.453354 | 6_4:+10359397 | None:intergenic |
| CATTTGATCATTGTTCAAGA+TGG | 0.457553 | 6_4:-10361794 | Msa0976380:CDS |
| TTCTCTAAAAGGATCATAAA+GGG | 0.459821 | 6_4:+10360749 | None:intergenic |
| ACAATAAAGTACAATGATCT+AGG | 0.463295 | 6_4:-10358985 | Msa0976380:three_prime_UTR |
| ACCTTGATTTCTTGGAAATG+TGG | 0.471408 | 6_4:-10361838 | Msa0976380:CDS |
| TCTTTCCTTAGGTTCACAAA+TGG | 0.471856 | 6_4:+10359396 | None:intergenic |
| CTCTCGCTTTATTGCAACAA+TGG | 0.472363 | 6_4:-10361918 | Msa0976380:exon |
| TCCACATTTCCAAGAAATCA+AGG | 0.472751 | 6_4:+10361837 | None:intergenic |
| TAATAAGCTTCTTGGTCCTA+GGG | 0.473474 | 6_4:-10361705 | Msa0976380:CDS |
| TAGGTTGCCAATGATCCATC+TGG | 0.479239 | 6_4:-10360843 | Msa0976380:CDS |
| ATGTCAAGTTGATCTTTCAA+TGG | 0.487236 | 6_4:+10361881 | None:intergenic |
| TGAGTAGGAGCATCATAATC+TGG | 0.489281 | 6_4:+10360642 | None:intergenic |
| TGACAAGCTTGCAGATGCTA+TGG | 0.491811 | 6_4:-10359229 | Msa0976380:CDS |
| TGGTCACTTGGATTGAAGCT+TGG | 0.492678 | 6_4:-10359209 | Msa0976380:CDS |
| AAATCAAGGTTCCTTATAGT+AGG | 0.497648 | 6_4:+10361851 | None:intergenic |
| TGAACAATGATCAAATGATA+AGG | 0.500026 | 6_4:+10361800 | None:intergenic |
| CAGGTAATCTGTGATCATTT+GGG | 0.500253 | 6_4:-10359471 | Msa0976380:CDS |
| AGAGGCTTGACAAGCTGAGT+AGG | 0.500476 | 6_4:+10360627 | None:intergenic |
| TCCAATGTGTGGAATGAACT+TGG | 0.503402 | 6_4:-10359909 | Msa0976380:CDS |
| TTGGGACTTGGAATCAAGAC+TGG | 0.504781 | 6_4:-10359453 | Msa0976380:CDS |
| ATGTCATCATAACGTCCAAT+TGG | 0.515690 | 6_4:+10359827 | None:intergenic |
| GGAACATTATTTCCAATGTG+TGG | 0.516575 | 6_4:-10359920 | Msa0976380:CDS |
| GGTAACTAAGACTTGTTCAA+AGG | 0.517870 | 6_4:+10362123 | None:intergenic |
| GTGGGCTGGCTGGTGCTGCA+AGG | 0.521238 | 6_4:-10359804 | Msa0976380:intron |
| TAAGAAATCGGCACTAGTGT+GGG | 0.526043 | 6_4:+10362070 | None:intergenic |
| GTCCATGAGAAATAGCTGTT+GGG | 0.527902 | 6_4:+10360679 | None:intergenic |
| GCCAAGTTCATTCCACACAT+TGG | 0.530763 | 6_4:+10359908 | None:intergenic |
| ATGGAGTTGATGGACACAAA+AGG | 0.531538 | 6_4:+10360784 | None:intergenic |
| GTAACCCATTTGTGAACCTA+AGG | 0.533378 | 6_4:-10359401 | Msa0976380:CDS |
| GTCCCAACAGCTATTTCTCA+TGG | 0.539058 | 6_4:-10360681 | Msa0976380:CDS |
| CTAAGAAATCGGCACTAGTG+TGG | 0.539501 | 6_4:+10362069 | None:intergenic |
| TTGCAGATGCTATGGTCACT+TGG | 0.544395 | 6_4:-10359221 | Msa0976380:CDS |
| ATGATGACATGTGGGCTGGC+TGG | 0.546299 | 6_4:-10359814 | Msa0976380:CDS |
| ACTGTTCTGACCATACCAAA+AGG | 0.554365 | 6_4:-10359941 | Msa0976380:CDS |
| GTGTTGATGTATAAGGTATG+TGG | 0.557988 | 6_4:-10359966 | Msa0976380:intron |
| AGTCCATGAGAAATAGCTGT+TGG | 0.559966 | 6_4:+10360678 | None:intergenic |
| AATGAAATGCAAGAAGCCCT+AGG | 0.561699 | 6_4:+10361689 | None:intergenic |
| ATGAGACCAAAATACATAGC+TGG | 0.563502 | 6_4:+10359863 | None:intergenic |
| GTACAAAGGCATATTCTGGC+AGG | 0.565304 | 6_4:-10359373 | Msa0976380:CDS |
| CACCTTCACGAAGACTAAAA+GGG | 0.568809 | 6_4:+10360703 | None:intergenic |
| AAAACTATTAAGGTTCCACC+TGG | 0.576460 | 6_4:-10361761 | Msa0976380:CDS |
| AAATTCAAATTCAAGATCAA+AGG | 0.579265 | 6_4:+10359111 | None:intergenic |
| TACCTAGTGTTCCTCTCAAG+AGG | 0.579431 | 6_4:+10360609 | None:intergenic |
| TGAAATGTCCAAACAAGTCA+AGG | 0.580634 | 6_4:-10359280 | Msa0976380:CDS |
| CGTTATGATGACATGTGGGC+TGG | 0.587127 | 6_4:-10359818 | Msa0976380:CDS |
| TTGATTTCTTGGAAATGTGG+AGG | 0.588191 | 6_4:-10361835 | Msa0976380:CDS |
| TCAAGTTGATCTTTCAATGG+AGG | 0.604132 | 6_4:+10361884 | None:intergenic |
| GATTTGGTAACCTTTGTGGA+TGG | 0.611859 | 6_4:+10362165 | None:intergenic |
| AGCTTGTCAAGCCTCTTGAG+AGG | 0.631328 | 6_4:-10360620 | Msa0976380:CDS |
| ACAAAGGTTACCAAATCTCA+CGG | 0.635679 | 6_4:-10362159 | Msa0976380:five_prime_UTR |
| AGCCTCTTGAGAGGAACACT+AGG | 0.655401 | 6_4:-10360611 | Msa0976380:intron |
| AAGAAATCGGCACTAGTGTG+GGG | 0.663009 | 6_4:+10362071 | None:intergenic |
| TAAAGTTCATAATCAAAACC+AGG | 0.671327 | 6_4:+10361743 | None:intergenic |
| TTGGACGTTATGATGACATG+TGG | 0.675841 | 6_4:-10359823 | Msa0976380:CDS |
| TCTCTCTCTTCCATCCACAA+AGG | 0.677091 | 6_4:-10362175 | None:intergenic |
| AGTGTGTGAAGAAATATAAG+GGG | 0.678455 | 6_4:+10362015 | None:intergenic |
| GTGTGTGAAGAAATATAAGG+GGG | 0.680344 | 6_4:+10362016 | None:intergenic |
| AGACTTGTTCAAAGGTTGTG+TGG | 0.686096 | 6_4:+10362131 | None:intergenic |
| AGTTCATAATCAAAACCAGG+TGG | 0.695438 | 6_4:+10361746 | None:intergenic |
| TGGACGTTATGATGACATGT+GGG | 0.701478 | 6_4:-10359822 | Msa0976380:CDS |
| AACCTAAGGAAAGAGTACAA+AGG | 0.702444 | 6_4:-10359387 | Msa0976380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAAATTAAAACAAACA+AGG | + | chr6_4:10359870-10359889 | None:intergenic | 10.0% |
| !! | TATTAAAAAAAATACAATGT+TGG | - | chr6_4:10361013-10361032 | Msa0976380:intron | 10.0% |
| !! | AAAAATTAAAAATAATGCAA+AGG | + | chr6_4:10361287-10361306 | None:intergenic | 10.0% |
| !! | TTGATTATGAACTTTATAAT+AGG | - | chr6_4:10359318-10359337 | Msa0976380:CDS | 15.0% |
| !! | ATTGTATAAAACAATTTACA+TGG | - | chr6_4:10360741-10360760 | Msa0976380:CDS | 15.0% |
| !! | AAAACAATGTAGTTAAAATT+TGG | - | chr6_4:10360881-10360900 | Msa0976380:intron | 15.0% |
| !!! | TCATTTTCTCAAAATTTTAT+CGG | - | chr6_4:10361414-10361433 | Msa0976380:intron | 15.0% |
| !!! | AAAGTTTTTCTGAATGTTTA+AGG | + | chr6_4:10358955-10358974 | None:intergenic | 20.0% |
| !! | AAATGATAAGGTTCAAAATA+TGG | + | chr6_4:10359245-10359264 | None:intergenic | 20.0% |
| !! | AATGATATTAATAAGCTTCT+TGG | - | chr6_4:10359341-10359360 | Msa0976380:CDS | 20.0% |
| !!! | TTTGTTTTGTACAATGTTTA+TGG | - | chr6_4:10359536-10359555 | Msa0976380:intron | 20.0% |
| !! | ATATGATTTCTTCACATTTA+TGG | - | chr6_4:10359569-10359588 | Msa0976380:intron | 20.0% |
| !!! | CTACTTTAGCTTTTTAATAT+TGG | - | chr6_4:10359636-10359655 | Msa0976380:intron | 20.0% |
| !! | TAAGTTACACAAAAAGAAAA+AGG | + | chr6_4:10359813-10359832 | None:intergenic | 20.0% |
| !! | TGTGTAACTTATAATTGTAT+TGG | - | chr6_4:10359822-10359841 | Msa0976380:CDS | 20.0% |
| !! | GTATTCTATAACATTAGATT+TGG | - | chr6_4:10359928-10359947 | Msa0976380:CDS | 20.0% |
| !!! | TCCATTGGTTTTATTTTTTT+TGG | - | chr6_4:10360079-10360098 | Msa0976380:intron | 20.0% |
| !!! | TACTACTGATGTTTTTTTTA+CGG | - | chr6_4:10360496-10360515 | Msa0976380:intron | 20.0% |
| !!! | TTTTTTACGGTTTTAAATAG+CGG | - | chr6_4:10360509-10360528 | Msa0976380:intron | 20.0% |
| !!! | GAAATCTTTATTTAAAACCT+AGG | - | chr6_4:10360683-10360702 | Msa0976380:CDS | 20.0% |
| !! | AATTCATATACTAATAACCT+AGG | + | chr6_4:10360703-10360722 | None:intergenic | 20.0% |
| !! | AGATATTATGTATGTATGTT+AGG | - | chr6_4:10360785-10360804 | Msa0976380:CDS | 20.0% |
| !!! | GACAATTCAAATTTAAAGTT+TGG | - | chr6_4:10360845-10360864 | Msa0976380:intron | 20.0% |
| !!! | CATGTTATACTATTATTTCT+TGG | + | chr6_4:10360965-10360984 | None:intergenic | 20.0% |
| !! | TATTTGTAATTAACCAAGAT+TGG | + | chr6_4:10361920-10361939 | None:intergenic | 20.0% |
| !! | AAATTCAAATTCAAGATCAA+AGG | + | chr6_4:10361946-10361965 | None:intergenic | 20.0% |
| ! | TGTTTATGAAAGGAAAAAGA+GGG | + | chr6_4:10359066-10359085 | None:intergenic | 25.0% |
| ! | TTGTTTATGAAAGGAAAAAG+AGG | + | chr6_4:10359067-10359086 | None:intergenic | 25.0% |
| !! | AAAGAGAGTTTGTTTATGAA+AGG | + | chr6_4:10359076-10359095 | None:intergenic | 25.0% |
| ! | TGAACAATGATCAAATGATA+AGG | + | chr6_4:10359257-10359276 | None:intergenic | 25.0% |
| !! | GAACCTTAATAGTTTTTGAA+GGG | + | chr6_4:10359289-10359308 | None:intergenic | 25.0% |
| ! | TAAAGTTCATAATCAAAACC+AGG | + | chr6_4:10359314-10359333 | None:intergenic | 25.0% |
| ! | ATTTATGGTTCCATATTTCA+TGG | - | chr6_4:10359584-10359603 | Msa0976380:intron | 25.0% |
| ! | CAAATAAAATCATCACAATG+AGG | + | chr6_4:10359610-10359629 | None:intergenic | 25.0% |
| !! | TTGTGTTTTATGTGTCAATA+CGG | - | chr6_4:10359783-10359802 | Msa0976380:intron | 25.0% |
| !!! | TAATTGTATTGGTTCAGTTA+TGG | - | chr6_4:10359833-10359852 | Msa0976380:CDS | 25.0% |
| ! | GCCAAAAAAAATAAAACCAA+TGG | + | chr6_4:10360083-10360102 | None:intergenic | 25.0% |
| !!! | GTTTTATTTTTTTTGGCATC+TGG | - | chr6_4:10360086-10360105 | Msa0976380:intron | 25.0% |
| !!! | TTTCTTATGTACTTTTTGTG+TGG | - | chr6_4:10360186-10360205 | Msa0976380:intron | 25.0% |
| !! | TTCTCTAAAAGGATCATAAA+GGG | + | chr6_4:10360308-10360327 | None:intergenic | 25.0% |
| ! | CATACATAATATCTCAATGT+TGG | + | chr6_4:10360779-10360798 | None:intergenic | 25.0% |
| ! | TTAATTGAATGATTCAGATG+TGG | - | chr6_4:10360915-10360934 | Msa0976380:intron | 25.0% |
| !! | AGTATTTGTGTTGATGTATA+AGG | - | chr6_4:10361081-10361100 | Msa0976380:intron | 25.0% |
| !! | AAATAATGTTCCTTTTGGTA+TGG | + | chr6_4:10361126-10361145 | None:intergenic | 25.0% |
| !! | ATTGGAAATAATGTTCCTTT+TGG | + | chr6_4:10361131-10361150 | None:intergenic | 25.0% |
| ! | AATCATTGTTCATGATGAAT+TGG | - | chr6_4:10361559-10361578 | Msa0976380:intron | 25.0% |
| !! | CTTTGCTATGAAAGATATAA+GGG | + | chr6_4:10361630-10361649 | None:intergenic | 25.0% |
| ! | ACAATAAAGTACAATGATCT+AGG | - | chr6_4:10362069-10362088 | Msa0976380:five_prime_UTR | 25.0% |
| !! | TATTGGACCTTATATCATTT+TGG | - | chr6_4:10362140-10362159 | Msa0976380:five_prime_UTR | 25.0% |
| ! | ATTGCTTCCAAAATGATATA+AGG | + | chr6_4:10362150-10362169 | None:intergenic | 25.0% |
| TGTGAAAATGCCTAAGAAAT+CGG | + | chr6_4:10358999-10359018 | None:intergenic | 30.0% | |
| AGTGTGTGAAGAAATATAAG+GGG | + | chr6_4:10359042-10359061 | None:intergenic | 30.0% | |
| GAGTGTGTGAAGAAATATAA+GGG | + | chr6_4:10359043-10359062 | None:intergenic | 30.0% | |
| GTTTATGAAAGGAAAAAGAG+GGG | + | chr6_4:10359065-10359084 | None:intergenic | 30.0% | |
| !! | ATGTCAAGTTGATCTTTCAA+TGG | + | chr6_4:10359176-10359195 | None:intergenic | 30.0% |
| ACATTGTGATTCCTACTATA+AGG | - | chr6_4:10359192-10359211 | Msa0976380:CDS | 30.0% | |
| AAATCAAGGTTCCTTATAGT+AGG | + | chr6_4:10359206-10359225 | None:intergenic | 30.0% | |
| TATAAGGAACCTTGATTTCT+TGG | - | chr6_4:10359208-10359227 | Msa0976380:CDS | 30.0% | |
| CATTTGATCATTGTTCAAGA+TGG | - | chr6_4:10359260-10359279 | Msa0976380:CDS | 30.0% | |
| TGACCCTTCAAAAACTATTA+AGG | - | chr6_4:10359283-10359302 | Msa0976380:CDS | 30.0% | |
| ! | GGAACCTTAATAGTTTTTGA+AGG | + | chr6_4:10359290-10359309 | None:intergenic | 30.0% |
| TAATATTGGATATTGCGTTC+CGG | - | chr6_4:10359650-10359669 | Msa0976380:intron | 30.0% | |
| ! | TGCATTTTACCCTAATGTAA+AGG | + | chr6_4:10359714-10359733 | None:intergenic | 30.0% |
| TTTACATTAGGGTAAAATGC+AGG | - | chr6_4:10359713-10359732 | Msa0976380:intron | 30.0% | |
| TAAAACCAATGGAAAGACTA+AGG | + | chr6_4:10360072-10360091 | None:intergenic | 30.0% | |
| TTGAAAAACAATGGAGTTGA+TGG | + | chr6_4:10360283-10360302 | None:intergenic | 30.0% | |
| !! | TAAAGGGTGTTGAAAAACAA+TGG | + | chr6_4:10360292-10360311 | None:intergenic | 30.0% |
| ! | CTTCTCTAAAAGGATCATAA+AGG | + | chr6_4:10360309-10360328 | None:intergenic | 30.0% |
| !! | CTTTATGATCCTTTTAGAGA+AGG | - | chr6_4:10360307-10360326 | Msa0976380:intron | 30.0% |
| GTGCATGATATTTAAACTCT+TGG | - | chr6_4:10361035-10361054 | Msa0976380:intron | 30.0% | |
| ATAGACTCGAAACAATCTTA+TGG | - | chr6_4:10361493-10361512 | Msa0976380:intron | 30.0% | |
| ! | GCTTTGCTATGAAAGATATA+AGG | + | chr6_4:10361631-10361650 | None:intergenic | 30.0% |
| !! | AGAGCAAGATTTTGGAAAAA+TGG | + | chr6_4:10361718-10361737 | None:intergenic | 30.0% |
| !!! | AAGTTTTTCCTTGACTTGTT+TGG | + | chr6_4:10361785-10361804 | None:intergenic | 30.0% |
| AAACAAGTCAAGGAAAAACT+TGG | - | chr6_4:10361784-10361803 | Msa0976380:CDS | 30.0% | |
| !!! | TGGCTTAAGATTTTTTAGCA+GGG | + | chr6_4:10361882-10361901 | None:intergenic | 30.0% |
| !!! | TTGGCTTAAGATTTTTTAGC+AGG | + | chr6_4:10361883-10361902 | None:intergenic | 30.0% |
| ! | ATTGGTTTAGAAGTTGTCAT+TGG | + | chr6_4:10361902-10361921 | None:intergenic | 30.0% |
| ACAAAGGTTACCAAATCTCA+CGG | - | chr6_4:10358895-10358914 | Msa0976380:three_prime_UTR | 35.0% | |
| ! | GGTAACTAAGACTTGTTCAA+AGG | + | chr6_4:10358934-10358953 | None:intergenic | 35.0% |
| GTGTGTGAAGAAATATAAGG+GGG | + | chr6_4:10359041-10359060 | None:intergenic | 35.0% | |
| GGAGTGTGTGAAGAAATATA+AGG | + | chr6_4:10359044-10359063 | None:intergenic | 35.0% | |
| !! | TCAAGTTGATCTTTCAATGG+AGG | + | chr6_4:10359173-10359192 | None:intergenic | 35.0% |
| ACCTTGATTTCTTGGAAATG+TGG | - | chr6_4:10359216-10359235 | Msa0976380:CDS | 35.0% | |
| TCCACATTTCCAAGAAATCA+AGG | + | chr6_4:10359220-10359239 | None:intergenic | 35.0% | |
| TTGATTTCTTGGAAATGTGG+AGG | - | chr6_4:10359219-10359238 | Msa0976380:CDS | 35.0% | |
| AAAACTATTAAGGTTCCACC+TGG | - | chr6_4:10359293-10359312 | Msa0976380:CDS | 35.0% | |
| AGTTCATAATCAAAACCAGG+TGG | + | chr6_4:10359311-10359330 | None:intergenic | 35.0% | |
| TTAATAAGCTTCTTGGTCCT+AGG | - | chr6_4:10359348-10359367 | Msa0976380:CDS | 35.0% | |
| TAATAAGCTTCTTGGTCCTA+GGG | - | chr6_4:10359349-10359368 | Msa0976380:CDS | 35.0% | |
| GTATGTAACAATCCTCTTCA+AGG | - | chr6_4:10359895-10359914 | Msa0976380:CDS | 35.0% | |
| ! | TCCTCTTCAAGGAGATATTT+TGG | - | chr6_4:10359906-10359925 | Msa0976380:CDS | 35.0% |
| ACCAAAATATCTCCTTGAAG+AGG | + | chr6_4:10359910-10359929 | None:intergenic | 35.0% | |
| CGTTATAACACTTCGATTGA+AGG | - | chr6_4:10359966-10359985 | Msa0976380:intron | 35.0% | |
| !! | ATGTACTTTTTGTGTGGCTT+AGG | - | chr6_4:10360192-10360211 | Msa0976380:intron | 35.0% |
| ! | TTGTTTTCCAGATGGATCAT+TGG | + | chr6_4:10360221-10360240 | None:intergenic | 35.0% |
| !!! | GCATTGATTTGTTTTCCAGA+TGG | + | chr6_4:10360229-10360248 | None:intergenic | 35.0% |
| AAATCAGCACCTTCTCTAAA+AGG | + | chr6_4:10360319-10360338 | None:intergenic | 35.0% | |
| ATGTTAGGAACACTCACAAT+CGG | - | chr6_4:10360800-10360819 | Msa0976380:CDS | 35.0% | |
| ! | GTGTTGATGTATAAGGTATG+TGG | - | chr6_4:10361088-10361107 | Msa0976380:intron | 35.0% |
| GGAACATTATTTCCAATGTG+TGG | - | chr6_4:10361134-10361153 | Msa0976380:intron | 35.0% | |
| ! | ATTGGACCAGCTATGTATTT+TGG | - | chr6_4:10361185-10361204 | Msa0976380:intron | 35.0% |
| ATGAGACCAAAATACATAGC+TGG | + | chr6_4:10361194-10361213 | None:intergenic | 35.0% | |
| !!! | AGCTATGTATTTTGGTCTCA+TGG | - | chr6_4:10361193-10361212 | Msa0976380:intron | 35.0% |
| !!! | GCTATGTATTTTGGTCTCAT+GGG | - | chr6_4:10361194-10361213 | Msa0976380:intron | 35.0% |
| ATGTCATCATAACGTCCAAT+TGG | + | chr6_4:10361230-10361249 | None:intergenic | 35.0% | |
| TTGTTCATGATGAATTGGAC+AGG | - | chr6_4:10361564-10361583 | Msa0976380:intron | 35.0% | |
| ACAGGTAATCTGTGATCATT+TGG | - | chr6_4:10361582-10361601 | Msa0976380:intron | 35.0% | |
| CAGGTAATCTGTGATCATTT+GGG | - | chr6_4:10361583-10361602 | Msa0976380:intron | 35.0% | |
| CTTTCCTTAGGTTCACAAAT+GGG | + | chr6_4:10361660-10361679 | None:intergenic | 35.0% | |
| TCTTTCCTTAGGTTCACAAA+TGG | + | chr6_4:10361661-10361680 | None:intergenic | 35.0% | |
| ! | AACCTAAGGAAAGAGTACAA+AGG | - | chr6_4:10361667-10361686 | Msa0976380:CDS | 35.0% |
| ! | AAGAGTACAAAGGCATATTC+TGG | - | chr6_4:10361677-10361696 | Msa0976380:CDS | 35.0% |
| !! | CTTTTGGAAGAGCAAGATTT+TGG | + | chr6_4:10361726-10361745 | None:intergenic | 35.0% |
| ! | TGAACAGTTGTGCATTCTTT+TGG | + | chr6_4:10361742-10361761 | None:intergenic | 35.0% |
| TGAAATGTCCAAACAAGTCA+AGG | - | chr6_4:10361774-10361793 | Msa0976380:CDS | 35.0% | |
| TCTGCAAGCTTGTCAAAATA+AGG | + | chr6_4:10361820-10361839 | None:intergenic | 35.0% | |
| GACAACTTCTAAACCAATCT+TGG | - | chr6_4:10361904-10361923 | Msa0976380:exon | 35.0% | |
| TGAGTGCTAGAGATGATTAT+TGG | - | chr6_4:10362123-10362142 | Msa0976380:five_prime_UTR | 35.0% | |
| ! | GATTTGGTAACCTTTGTGGA+TGG | + | chr6_4:10358892-10358911 | None:intergenic | 40.0% |
| ! | GTGAGATTTGGTAACCTTTG+TGG | + | chr6_4:10358896-10358915 | None:intergenic | 40.0% |
| ! | AGACTTGTTCAAAGGTTGTG+TGG | + | chr6_4:10358926-10358945 | None:intergenic | 40.0% |
| TAAGAAATCGGCACTAGTGT+GGG | + | chr6_4:10358987-10359006 | None:intergenic | 40.0% | |
| ATATAAGGGGGTGAGAATAG+TGG | + | chr6_4:10359029-10359048 | None:intergenic | 40.0% | |
| ! | CTCTCGCTTTATTGCAACAA+TGG | - | chr6_4:10359136-10359155 | Msa0976380:three_prime_UTR | 40.0% |
| AATGAAATGCAAGAAGCCCT+AGG | + | chr6_4:10359368-10359387 | None:intergenic | 40.0% | |
| GGCTTCTTGCATTTCATTCA+AGG | - | chr6_4:10359370-10359389 | Msa0976380:CDS | 40.0% | |
| ! | ATGTCGTTGCTTTGGTTACA+TGG | - | chr6_4:10359400-10359419 | Msa0976380:CDS | 40.0% |
| CACAATGAGGCCATGAAATA+TGG | + | chr6_4:10359597-10359616 | None:intergenic | 40.0% | |
| ! | CGCAATTTAAAACCGTGATC+CGG | + | chr6_4:10359672-10359691 | None:intergenic | 40.0% |
| !!! | CGGATCACGGTTTTAAATTG+CGG | - | chr6_4:10359670-10359689 | Msa0976380:intron | 40.0% |
| !!! | ACGGTTTTAAATTGCGGTTG+TGG | - | chr6_4:10359676-10359695 | Msa0976380:intron | 40.0% |
| !! | TCGATCGCTGATTCTATTGA+AGG | - | chr6_4:10360028-10360047 | Msa0976380:intron | 40.0% |
| !! | TATTGAAGGAGTGTTCAGTG+AGG | - | chr6_4:10360042-10360061 | Msa0976380:intron | 40.0% |
| ACCAATGGAAAGACTAAGGA+GGG | + | chr6_4:10360068-10360087 | None:intergenic | 40.0% | |
| AACCAATGGAAAGACTAAGG+AGG | + | chr6_4:10360069-10360088 | None:intergenic | 40.0% | |
| !! | ATGGAGTTGATGGACACAAA+AGG | + | chr6_4:10360273-10360292 | None:intergenic | 40.0% |
| !! | TACCCTTTTAGTCTTCGTGA+AGG | - | chr6_4:10360349-10360368 | Msa0976380:intron | 40.0% |
| CACCTTCACGAAGACTAAAA+GGG | + | chr6_4:10360354-10360373 | None:intergenic | 40.0% | |
| ACACCTTCACGAAGACTAAA+AGG | + | chr6_4:10360355-10360374 | None:intergenic | 40.0% | |
| GTCCATGAGAAATAGCTGTT+GGG | + | chr6_4:10360378-10360397 | None:intergenic | 40.0% | |
| AGTCCATGAGAAATAGCTGT+TGG | + | chr6_4:10360379-10360398 | None:intergenic | 40.0% | |
| !! | CAGCTATTTCTCATGGACTT+TGG | - | chr6_4:10360380-10360399 | Msa0976380:intron | 40.0% |
| !! | TGAGTAGGAGCATCATAATC+TGG | + | chr6_4:10360415-10360434 | None:intergenic | 40.0% |
| !!! | ACGGTTTTAAATAGCGGTCA+CGG | - | chr6_4:10360515-10360534 | Msa0976380:intron | 40.0% |
| ACTGTTCTGACCATACCAAA+AGG | - | chr6_4:10361113-10361132 | Msa0976380:intron | 40.0% | |
| TCCAATGTGTGGAATGAACT+TGG | - | chr6_4:10361145-10361164 | Msa0976380:intron | 40.0% | |
| GCATTTGATCGTGATCTGAT+TGG | - | chr6_4:10361167-10361186 | Msa0976380:intron | 40.0% | |
| !!! | TATTTTGGTCTCATGGGAGA+TGG | - | chr6_4:10361200-10361219 | Msa0976380:intron | 40.0% |
| TTGGACGTTATGATGACATG+TGG | - | chr6_4:10361231-10361250 | Msa0976380:intron | 40.0% | |
| TGGACGTTATGATGACATGT+GGG | - | chr6_4:10361232-10361251 | Msa0976380:intron | 40.0% | |
| TTCTGATTGTAGGCATGTTC+TGG | - | chr6_4:10361343-10361362 | Msa0976380:intron | 40.0% | |
| ! | ATCTGTGATCATTTGGGACT+TGG | - | chr6_4:10361589-10361608 | Msa0976380:intron | 40.0% |
| GTAACCCATTTGTGAACCTA+AGG | - | chr6_4:10361653-10361672 | Msa0976380:CDS | 40.0% | |
| TGCCTTTGTACTCTTTCCTT+AGG | + | chr6_4:10361672-10361691 | None:intergenic | 40.0% | |
| AAGAAATCGGCACTAGTGTG+GGG | + | chr6_4:10358986-10359005 | None:intergenic | 45.0% | |
| CTAAGAAATCGGCACTAGTG+TGG | + | chr6_4:10358988-10359007 | None:intergenic | 45.0% | |
| !! | CACACTAGTGCCGATTTCTT+AGG | - | chr6_4:10358986-10359005 | Msa0976380:three_prime_UTR | 45.0% |
| ACACTGCACGCCTTTACATT+AGG | - | chr6_4:10359701-10359720 | Msa0976380:intron | 45.0% | |
| CACTGCACGCCTTTACATTA+GGG | - | chr6_4:10359702-10359721 | Msa0976380:intron | 45.0% | |
| GGGTAAAATGCAGGCAAATG+TGG | - | chr6_4:10359722-10359741 | Msa0976380:intron | 45.0% | |
| GGCAAATGTGGTCGTATATG+TGG | - | chr6_4:10359734-10359753 | Msa0976380:intron | 45.0% | |
| GTCGTATATGTGGTTGCGAA+CGG | - | chr6_4:10359744-10359763 | Msa0976380:intron | 45.0% | |
| TCGTATATGTGGTTGCGAAC+GGG | - | chr6_4:10359745-10359764 | Msa0976380:intron | 45.0% | |
| TAGGTTGCCAATGATCCATC+TGG | - | chr6_4:10360211-10360230 | Msa0976380:intron | 45.0% | |
| !!! | GAAGGTGCTGATTTTGTTCG+TGG | - | chr6_4:10360325-10360344 | Msa0976380:intron | 45.0% |
| !! | GTCCCAACAGCTATTTCTCA+TGG | - | chr6_4:10360373-10360392 | Msa0976380:intron | 45.0% |
| TACCTAGTGTTCCTCTCAAG+AGG | + | chr6_4:10360448-10360467 | None:intergenic | 45.0% | |
| GCCAAGTTCATTCCACACAT+TGG | + | chr6_4:10361149-10361168 | None:intergenic | 45.0% | |
| CTACTCGAATCTACGTTGCA+CGG | - | chr6_4:10361316-10361335 | Msa0976380:intron | 45.0% | |
| GAGTCTATGAAGCACGAACA+CGG | + | chr6_4:10361481-10361500 | None:intergenic | 45.0% | |
| TTGGGACTTGGAATCAAGAC+TGG | - | chr6_4:10361601-10361620 | Msa0976380:intron | 45.0% | |
| ! | GTACAAAGGCATATTCTGGC+AGG | - | chr6_4:10361681-10361700 | Msa0976380:CDS | 45.0% |
| TGACAAGCTTGCAGATGCTA+TGG | - | chr6_4:10361825-10361844 | Msa0976380:CDS | 45.0% | |
| TTGCAGATGCTATGGTCACT+TGG | - | chr6_4:10361833-10361852 | Msa0976380:CDS | 45.0% | |
| TGGTCACTTGGATTGAAGCT+TGG | - | chr6_4:10361845-10361864 | Msa0976380:CDS | 45.0% | |
| GGTCACTTGGATTGAAGCTT+GGG | - | chr6_4:10361846-10361865 | Msa0976380:CDS | 45.0% | |
| !!! | TATTTATTTATTTTTTTCTT+AGG | - | chr6_4:10360661-10360680 | Msa0976380:CDS | 5.0% |
| !! | TGTGGTGTTGCCGTGAGATT+TGG | + | chr6_4:10358908-10358927 | None:intergenic | 50.0% |
| GACTCTGCATGTCGTTGCTT+TGG | - | chr6_4:10359392-10359411 | Msa0976380:CDS | 50.0% | |
| GGATATTGCGTTCCGGATCA+CGG | - | chr6_4:10359657-10359676 | Msa0976380:intron | 50.0% | |
| TGTGGTTGCGAACGGGAATT+CGG | - | chr6_4:10359752-10359771 | Msa0976380:intron | 50.0% | |
| ! | GCCCTCCTTAGTCTTTCCAT+TGG | - | chr6_4:10360064-10360083 | Msa0976380:intron | 50.0% |
| AGAGGCTTGACAAGCTGAGT+AGG | + | chr6_4:10360430-10360449 | None:intergenic | 50.0% | |
| AGCTTGTCAAGCCTCTTGAG+AGG | - | chr6_4:10360434-10360453 | Msa0976380:intron | 50.0% | |
| AGCCTCTTGAGAGGAACACT+AGG | - | chr6_4:10360443-10360462 | Msa0976380:intron | 50.0% | |
| ATGGGAGATGGTCAGCCAAT+TGG | - | chr6_4:10361212-10361231 | Msa0976380:intron | 50.0% | |
| CGTTATGATGACATGTGGGC+TGG | - | chr6_4:10361236-10361255 | Msa0976380:intron | 50.0% | |
| GCACGGACACTTCTGATTGT+AGG | - | chr6_4:10361333-10361352 | Msa0976380:intron | 50.0% | |
| !! | CACAAGTGTCGACGTTGTGT+CGG | + | chr6_4:10361378-10361397 | None:intergenic | 50.0% |
| ATGAAGCACGAACACGGACA+CGG | + | chr6_4:10361475-10361494 | None:intergenic | 50.0% | |
| !! | ATGATGACATGTGGGCTGGC+TGG | - | chr6_4:10361240-10361259 | Msa0976380:intron | 55.0% |
| ACGAACACGGACACGGATAC+TGG | + | chr6_4:10361468-10361487 | None:intergenic | 55.0% | |
| !! | GTGGGCTGGCTGGTGCTGCA+AGG | - | chr6_4:10361250-10361269 | Msa0976380:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 10358886 | 10362190 | 10358886 | ID=Msa0976380;Name=Msa0976380 |
| chr6_4 | mRNA | 10358886 | 10362190 | 10358886 | ID=Msa0976380-mRNA-1;Parent=Msa0976380;Name=Msa0976380-mRNA-1;_AED=0.01;_eAED=0.01;_QI=269|1|1|1|1|1|4|293|347 |
| chr6_4 | exon | 10358886 | 10359490 | 10358886 | ID=Msa0976380-mRNA-1:exon:3771;Parent=Msa0976380-mRNA-1 |
| chr6_4 | exon | 10359805 | 10359973 | 10359805 | ID=Msa0976380-mRNA-1:exon:3770;Parent=Msa0976380-mRNA-1 |
| chr6_4 | exon | 10360612 | 10360862 | 10360612 | ID=Msa0976380-mRNA-1:exon:3769;Parent=Msa0976380-mRNA-1 |
| chr6_4 | exon | 10361610 | 10362190 | 10361610 | ID=Msa0976380-mRNA-1:exon:3768;Parent=Msa0976380-mRNA-1 |
| chr6_4 | five_prime_UTR | 10361922 | 10362190 | 10361922 | ID=Msa0976380-mRNA-1:five_prime_utr;Parent=Msa0976380-mRNA-1 |
| chr6_4 | CDS | 10361610 | 10361921 | 10361610 | ID=Msa0976380-mRNA-1:cds;Parent=Msa0976380-mRNA-1 |
| chr6_4 | CDS | 10360612 | 10360862 | 10360612 | ID=Msa0976380-mRNA-1:cds;Parent=Msa0976380-mRNA-1 |
| chr6_4 | CDS | 10359805 | 10359973 | 10359805 | ID=Msa0976380-mRNA-1:cds;Parent=Msa0976380-mRNA-1 |
| chr6_4 | CDS | 10359179 | 10359490 | 10359179 | ID=Msa0976380-mRNA-1:cds;Parent=Msa0976380-mRNA-1 |
| chr6_4 | three_prime_UTR | 10358886 | 10359178 | 10358886 | ID=Msa0976380-mRNA-1:three_prime_utr;Parent=Msa0976380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
