Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0940530 | XP_013451181.1 | 89.234 | 418 | 20 | 2 | 1 | 393 | 603 | 1020 | 0.0 | 747 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0940530 | sp|Q9LY77|ACA12_ARATH | 68.182 | 418 | 99 | 4 | 1 | 393 | 612 | 1020 | 0.0 | 575 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0875480 | Msa0940530 | 0.803883 | 2.818220e-49 | -8.615850e-47 |
| Msa0940530 | Msa1327200 | 0.805164 | 1.523685e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0940530 | MtrunA17_Chr6g0456201 | 89.234 | 418 | 20 | 2 | 1 | 393 | 603 | 1020 | 0.0 | 747 |
| Msa0940530 | MtrunA17_Chr8g0340261 | 83.771 | 419 | 26 | 3 | 1 | 394 | 155 | 556 | 0.0 | 689 |
| Msa0940530 | MtrunA17_Chr7g0260401 | 68.182 | 418 | 102 | 3 | 1 | 387 | 630 | 1047 | 0.0 | 577 |
| Msa0940530 | MtrunA17_Chr2g0298871 | 58.140 | 430 | 146 | 3 | 1 | 396 | 657 | 1086 | 2.79e-168 | 499 |
| Msa0940530 | MtrunA17_Chr4g0002331 | 58.753 | 417 | 139 | 3 | 1 | 384 | 670 | 1086 | 4.92e-163 | 486 |
| Msa0940530 | MtrunA17_Chr8g0382071 | 50.118 | 423 | 167 | 6 | 1 | 394 | 617 | 1024 | 1.78e-129 | 397 |
| Msa0940530 | MtrunA17_Chr4g0054021 | 51.471 | 408 | 160 | 5 | 1 | 379 | 539 | 937 | 4.80e-129 | 394 |
| Msa0940530 | MtrunA17_Chr3g0134771 | 50.245 | 408 | 164 | 5 | 1 | 379 | 619 | 1016 | 1.34e-128 | 394 |
| Msa0940530 | MtrunA17_Chr1g0173111 | 50.245 | 408 | 164 | 5 | 1 | 379 | 614 | 1011 | 1.42e-126 | 389 |
| Msa0940530 | MtrunA17_Chr5g0401211 | 50.735 | 408 | 163 | 4 | 1 | 379 | 616 | 1014 | 9.64e-125 | 384 |
| Msa0940530 | MtrunA17_Chr4g0020551 | 53.681 | 326 | 139 | 5 | 2 | 325 | 553 | 868 | 3.13e-112 | 348 |
| Msa0940530 | MtrunA17_Chr8g0355421 | 45.343 | 408 | 184 | 5 | 1 | 379 | 608 | 1005 | 5.50e-107 | 337 |
| Msa0940530 | MtrunA17_Chr7g0263361 | 40.604 | 298 | 162 | 4 | 1 | 284 | 577 | 873 | 1.30e-59 | 208 |
| Msa0940530 | MtrunA17_Chr5g0447521 | 33.496 | 409 | 220 | 9 | 1 | 377 | 616 | 1004 | 3.30e-58 | 204 |
| Msa0940530 | MtrunA17_Chr8g0346461 | 39.073 | 302 | 162 | 5 | 1 | 284 | 571 | 868 | 6.46e-58 | 204 |
| Msa0940530 | MtrunA17_Chr4g0005551 | 31.220 | 410 | 231 | 7 | 1 | 379 | 578 | 967 | 1.00e-54 | 194 |
| Msa0940530 | MtrunA17_Chr3g0134951 | 39.298 | 285 | 164 | 4 | 5 | 287 | 555 | 832 | 4.70e-54 | 192 |
| Msa0940530 | MtrunA17_Chr2g0334221 | 57.831 | 166 | 67 | 2 | 1 | 163 | 171 | 336 | 9.96e-54 | 182 |
| Msa0940530 | MtrunA17_Chr2g0334201 | 44.505 | 182 | 70 | 2 | 245 | 397 | 1 | 180 | 6.69e-49 | 164 |
| Msa0940530 | MtrunA17_Chr8g0381711 | 28.093 | 388 | 252 | 11 | 1 | 380 | 478 | 846 | 1.65e-30 | 124 |
| Msa0940530 | MtrunA17_Chr4g0072131 | 30.337 | 178 | 122 | 2 | 38 | 215 | 484 | 659 | 7.73e-21 | 95.1 |
| Msa0940530 | MtrunA17_Chr2g0298031 | 30.337 | 178 | 122 | 2 | 38 | 215 | 487 | 662 | 1.62e-20 | 94.0 |
| Msa0940530 | MtrunA17_Chr7g0276551 | 28.287 | 251 | 156 | 7 | 2 | 246 | 219 | 451 | 2.08e-20 | 93.6 |
| Msa0940530 | MtrunA17_Chr8g0374331 | 29.032 | 186 | 100 | 3 | 35 | 220 | 39 | 192 | 1.78e-19 | 87.0 |
| Msa0940530 | MtrunA17_Chr2g0333721 | 29.947 | 187 | 128 | 3 | 37 | 223 | 478 | 661 | 1.82e-19 | 90.9 |
| Msa0940530 | MtrunA17_Chr8g0374391 | 29.032 | 186 | 100 | 3 | 35 | 220 | 32 | 185 | 1.85e-19 | 87.0 |
| Msa0940530 | MtrunA17_Chr4g0059961 | 26.457 | 223 | 153 | 4 | 1 | 223 | 456 | 667 | 2.86e-19 | 90.1 |
| Msa0940530 | MtrunA17_Chr2g0297051 | 29.851 | 201 | 108 | 4 | 20 | 220 | 804 | 971 | 3.90e-19 | 89.7 |
| Msa0940530 | MtrunA17_Chr6g0452721 | 27.354 | 223 | 151 | 4 | 1 | 223 | 454 | 665 | 4.00e-19 | 89.7 |
| Msa0940530 | MtrunA17_Chr1g0148031 | 28.652 | 178 | 125 | 2 | 38 | 215 | 481 | 656 | 8.70e-19 | 88.6 |
| Msa0940530 | MtrunA17_Chr8g0365021 | 28.652 | 178 | 125 | 2 | 38 | 215 | 551 | 726 | 1.14e-18 | 88.6 |
| Msa0940530 | MtrunA17_Chr4g0065481 | 28.241 | 216 | 143 | 4 | 1 | 215 | 453 | 657 | 1.72e-18 | 87.8 |
| Msa0940530 | MtrunA17_Chr1g0147981 | 26.606 | 218 | 144 | 4 | 1 | 215 | 469 | 673 | 2.85e-18 | 87.0 |
| Msa0940530 | MtrunA17_Chr3g0138931 | 28.652 | 178 | 125 | 2 | 38 | 215 | 481 | 656 | 6.10e-18 | 86.3 |
| Msa0940530 | MtrunA17_Chr2g0304941 | 29.032 | 186 | 129 | 3 | 38 | 223 | 482 | 664 | 7.49e-18 | 85.9 |
| Msa0940530 | MtrunA17_Chr4g0052521 | 29.282 | 181 | 96 | 3 | 38 | 218 | 789 | 937 | 1.33e-17 | 85.1 |
| Msa0940530 | MtrunA17_Chr5g0397621 | 32.278 | 158 | 75 | 3 | 40 | 197 | 695 | 820 | 1.35e-17 | 85.1 |
| Msa0940530 | MtrunA17_Chr8g0339181 | 29.208 | 202 | 104 | 4 | 38 | 238 | 759 | 922 | 1.23e-16 | 82.0 |
| Msa0940530 | MtrunA17_Chr8g0335291 | 24.880 | 209 | 148 | 5 | 16 | 223 | 470 | 670 | 2.21e-14 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0940530 | AT3G63380.1 | 68.182 | 418 | 99 | 4 | 1 | 393 | 612 | 1020 | 0.0 | 575 |
| Msa0940530 | AT3G22910.1 | 70.504 | 417 | 90 | 4 | 1 | 392 | 607 | 1015 | 0.0 | 568 |
| Msa0940530 | AT5G57110.1 | 59.529 | 425 | 139 | 3 | 1 | 392 | 636 | 1060 | 3.65e-172 | 509 |
| Msa0940530 | AT5G57110.3 | 59.529 | 425 | 139 | 3 | 1 | 392 | 636 | 1060 | 3.65e-172 | 509 |
| Msa0940530 | AT5G57110.2 | 59.529 | 425 | 139 | 3 | 1 | 392 | 636 | 1060 | 3.65e-172 | 509 |
| Msa0940530 | AT4G29900.1 | 59.485 | 427 | 141 | 4 | 1 | 395 | 639 | 1065 | 1.26e-170 | 505 |
| Msa0940530 | AT4G29900.2 | 59.485 | 427 | 141 | 4 | 1 | 395 | 639 | 1065 | 1.26e-170 | 505 |
| Msa0940530 | AT3G21180.1 | 56.770 | 421 | 142 | 4 | 1 | 384 | 652 | 1069 | 1.55e-155 | 466 |
| Msa0940530 | AT3G57330.2 | 50.739 | 406 | 161 | 3 | 2 | 379 | 556 | 950 | 7.47e-132 | 402 |
| Msa0940530 | AT3G57330.1 | 50.739 | 406 | 161 | 3 | 2 | 379 | 611 | 1005 | 2.00e-131 | 402 |
| Msa0940530 | AT1G27770.3 | 50.860 | 407 | 162 | 5 | 2 | 379 | 557 | 954 | 1.53e-129 | 395 |
| Msa0940530 | AT1G27770.4 | 50.735 | 408 | 163 | 5 | 1 | 379 | 619 | 1017 | 8.46e-129 | 395 |
| Msa0940530 | AT1G27770.1 | 50.735 | 408 | 163 | 5 | 1 | 379 | 619 | 1017 | 8.46e-129 | 395 |
| Msa0940530 | AT4G37640.1 | 51.351 | 407 | 160 | 5 | 2 | 379 | 617 | 1014 | 6.72e-126 | 387 |
| Msa0940530 | AT2G41560.2 | 47.700 | 413 | 177 | 3 | 2 | 386 | 512 | 913 | 1.57e-125 | 384 |
| Msa0940530 | AT2G41560.3 | 47.700 | 413 | 177 | 3 | 2 | 386 | 512 | 913 | 1.57e-125 | 384 |
| Msa0940530 | AT2G41560.4 | 47.700 | 413 | 177 | 3 | 2 | 386 | 512 | 913 | 1.57e-125 | 384 |
| Msa0940530 | AT2G41560.1 | 47.700 | 413 | 177 | 3 | 2 | 386 | 614 | 1015 | 1.24e-124 | 385 |
| Msa0940530 | AT2G22950.1 | 50.735 | 408 | 163 | 5 | 1 | 379 | 617 | 1015 | 6.36e-124 | 382 |
| Msa0940530 | AT1G27770.2 | 52.427 | 309 | 118 | 3 | 100 | 379 | 635 | 943 | 3.09e-99 | 316 |
| Msa0940530 | AT5G53010.1 | 47.297 | 296 | 147 | 4 | 1 | 295 | 652 | 939 | 1.73e-76 | 256 |
| Msa0940530 | AT1G07670.2 | 39.057 | 297 | 168 | 3 | 1 | 284 | 572 | 868 | 5.16e-60 | 210 |
| Msa0940530 | AT1G07670.1 | 39.057 | 297 | 168 | 3 | 1 | 284 | 572 | 868 | 5.16e-60 | 210 |
| Msa0940530 | AT1G07810.1 | 39.333 | 300 | 163 | 5 | 1 | 284 | 572 | 868 | 1.63e-59 | 209 |
| Msa0940530 | AT4G00900.2 | 39.643 | 280 | 156 | 3 | 1 | 267 | 567 | 846 | 4.96e-57 | 201 |
| Msa0940530 | AT4G00900.1 | 39.643 | 280 | 156 | 3 | 1 | 267 | 567 | 846 | 4.96e-57 | 201 |
| Msa0940530 | AT1G10130.1 | 39.502 | 281 | 163 | 3 | 5 | 284 | 554 | 828 | 3.23e-55 | 196 |
| Msa0940530 | AT1G63440.1 | 29.952 | 207 | 109 | 4 | 17 | 220 | 764 | 937 | 2.63e-20 | 94.0 |
| Msa0940530 | AT3G60330.4 | 27.907 | 215 | 140 | 5 | 2 | 215 | 454 | 654 | 3.23e-20 | 93.6 |
| Msa0940530 | AT3G60330.3 | 27.907 | 215 | 140 | 5 | 2 | 215 | 454 | 654 | 3.23e-20 | 93.6 |
| Msa0940530 | AT3G60330.2 | 27.907 | 215 | 140 | 5 | 2 | 215 | 454 | 654 | 3.38e-20 | 93.6 |
| Msa0940530 | AT3G60330.1 | 27.907 | 215 | 140 | 5 | 2 | 215 | 454 | 654 | 3.38e-20 | 93.6 |
| Msa0940530 | AT4G30190.1 | 27.751 | 209 | 148 | 3 | 38 | 246 | 479 | 684 | 1.12e-19 | 92.0 |
| Msa0940530 | AT2G18960.3 | 27.751 | 209 | 148 | 3 | 38 | 246 | 415 | 620 | 1.31e-19 | 91.7 |
| Msa0940530 | AT2G18960.2 | 27.751 | 209 | 148 | 3 | 38 | 246 | 415 | 620 | 1.31e-19 | 91.7 |
| Msa0940530 | AT2G18960.1 | 27.751 | 209 | 148 | 3 | 38 | 246 | 479 | 684 | 1.32e-19 | 91.7 |
| Msa0940530 | AT5G57350.3 | 28.652 | 178 | 125 | 2 | 38 | 215 | 218 | 393 | 4.80e-19 | 89.7 |
| Msa0940530 | AT5G57350.4 | 28.652 | 178 | 125 | 2 | 38 | 215 | 480 | 655 | 8.74e-19 | 89.0 |
| Msa0940530 | AT5G57350.2 | 28.652 | 178 | 125 | 2 | 38 | 215 | 480 | 655 | 8.74e-19 | 89.0 |
| Msa0940530 | AT5G57350.1 | 28.652 | 178 | 125 | 2 | 38 | 215 | 480 | 655 | 8.74e-19 | 89.0 |
| Msa0940530 | AT2G24520.4 | 27.442 | 215 | 146 | 3 | 1 | 215 | 189 | 393 | 8.76e-19 | 89.0 |
| Msa0940530 | AT5G44790.1 | 31.188 | 202 | 106 | 4 | 19 | 220 | 780 | 948 | 9.60e-19 | 89.0 |
| Msa0940530 | AT2G24520.3 | 27.442 | 215 | 146 | 3 | 1 | 215 | 432 | 636 | 1.12e-18 | 89.0 |
| Msa0940530 | AT2G24520.1 | 27.442 | 215 | 146 | 3 | 1 | 215 | 432 | 636 | 1.12e-18 | 89.0 |
| Msa0940530 | AT2G24520.2 | 27.442 | 215 | 146 | 3 | 1 | 215 | 495 | 699 | 1.14e-18 | 89.0 |
| Msa0940530 | AT1G17260.1 | 29.493 | 217 | 138 | 6 | 1 | 215 | 458 | 661 | 1.44e-18 | 88.6 |
| Msa0940530 | AT5G62670.1 | 26.457 | 223 | 153 | 5 | 1 | 223 | 454 | 665 | 2.09e-18 | 87.8 |
| Msa0940530 | AT1G80660.2 | 29.032 | 186 | 129 | 3 | 38 | 223 | 355 | 537 | 4.05e-18 | 87.0 |
| Msa0940530 | AT3G47950.1 | 26.906 | 223 | 152 | 5 | 1 | 223 | 458 | 669 | 4.17e-18 | 87.0 |
| Msa0940530 | AT3G47950.2 | 26.906 | 223 | 152 | 5 | 1 | 223 | 458 | 669 | 4.17e-18 | 87.0 |
| Msa0940530 | AT1G80660.1 | 29.032 | 186 | 129 | 3 | 38 | 223 | 484 | 666 | 5.13e-18 | 86.7 |
| Msa0940530 | AT2G07560.1 | 27.619 | 210 | 146 | 5 | 38 | 246 | 482 | 686 | 5.31e-18 | 86.7 |
| Msa0940530 | AT1G80660.4 | 29.032 | 186 | 129 | 3 | 38 | 223 | 484 | 666 | 5.50e-18 | 86.7 |
| Msa0940530 | AT1G80660.3 | 29.032 | 186 | 129 | 3 | 38 | 223 | 484 | 666 | 5.70e-18 | 86.7 |
| Msa0940530 | AT3G42640.1 | 28.571 | 189 | 126 | 4 | 38 | 223 | 482 | 664 | 1.07e-17 | 85.9 |
| Msa0940530 | AT5G53010.2 | 41.441 | 111 | 57 | 3 | 1 | 111 | 664 | 766 | 2.04e-17 | 84.7 |
| Msa0940530 | AT4G30190.2 | 24.066 | 241 | 149 | 6 | 38 | 246 | 479 | 717 | 2.10e-15 | 79.0 |
| Msa0940530 | AT4G30110.1 | 27.143 | 210 | 113 | 4 | 37 | 246 | 510 | 679 | 7.27e-15 | 77.0 |
| Msa0940530 | AT4G30110.2 | 27.143 | 210 | 113 | 4 | 37 | 246 | 510 | 679 | 7.27e-15 | 77.0 |
| Msa0940530 | AT2G19110.2 | 26.383 | 235 | 131 | 6 | 38 | 272 | 521 | 713 | 1.75e-13 | 72.8 |
| Msa0940530 | AT2G19110.3 | 26.383 | 235 | 131 | 6 | 38 | 272 | 521 | 713 | 1.75e-13 | 72.8 |
| Msa0940530 | AT2G19110.1 | 26.383 | 235 | 131 | 6 | 38 | 272 | 521 | 713 | 1.75e-13 | 72.8 |
Find 69 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCACTGTTAGTTGAAAT+TGG | 0.167250 | 6_3:+13080963 | None:intergenic |
| TAACAGCAGTACAATTATTA+TGG | 0.188641 | 6_3:-13080886 | Msa0940530:CDS |
| ATTATGGGTCAATTTGATTA+TGG | 0.242182 | 6_3:-13080870 | Msa0940530:CDS |
| AATAATTGTACTGCTGTTAA+TGG | 0.248421 | 6_3:+13080890 | None:intergenic |
| GTTAGGGCTTGTCGGTATTA+AGG | 0.265803 | 6_3:-13081592 | Msa0940530:CDS |
| GGTGCTGTTTCTTGGCCTAT+TGG | 0.270147 | 6_3:-13080422 | Msa0940530:CDS |
| GTTCAATGTTTAAAACAAAA+AGG | 0.271876 | 6_3:-13081187 | Msa0940530:CDS |
| GACAATGATTTAACATTGTT+AGG | 0.284588 | 6_3:-13081609 | Msa0940530:CDS |
| TCCATTTGACAAACTTCTAA+TGG | 0.296674 | 6_3:-13081209 | Msa0940530:CDS |
| AAAGCCTACCAAGGAATTAA+TGG | 0.302816 | 6_3:-13080816 | Msa0940530:CDS |
| TCCCATTGAAAGACCGATAT+CGG | 0.305491 | 6_3:+13081108 | None:intergenic |
| TGGATTGTTTGTATTGGTTT+TGG | 0.305881 | 6_3:-13080443 | Msa0940530:CDS |
| GAGTTAACAAAATTACTATT+TGG | 0.307036 | 6_3:+13080717 | None:intergenic |
| CACATAATGTTAGTTATAAG+AGG | 0.361954 | 6_3:+13080767 | None:intergenic |
| CTGGTACAGAAAGGTTGAAT+TGG | 0.367852 | 6_3:-13080472 | Msa0940530:CDS |
| GGCCATGTAGTTGCTGTAAC+AGG | 0.373182 | 6_3:-13081166 | Msa0940530:CDS |
| AACAGCAGTACAATTATTAT+GGG | 0.378279 | 6_3:-13080885 | Msa0940530:CDS |
| AAAGGTTGAATTGGAGAGAA+TGG | 0.383579 | 6_3:-13080463 | Msa0940530:CDS |
| AATTTGATTATGGATACATT+AGG | 0.389466 | 6_3:-13080860 | Msa0940530:CDS |
| GTGAATGTCAAAATGATTAC+AGG | 0.392744 | 6_3:-13081516 | Msa0940530:intron |
| AGAGGCTTTGTTCTACCAAC+TGG | 0.413768 | 6_3:+13080785 | None:intergenic |
| ACCATTAGAAGTTTGTCAAA+TGG | 0.418812 | 6_3:+13081208 | None:intergenic |
| TTATCCATTAATTCCTTGGT+AGG | 0.435304 | 6_3:+13080812 | None:intergenic |
| ACAATGATTTAACATTGTTA+GGG | 0.444141 | 6_3:-13081608 | Msa0940530:CDS |
| TCCACCGCTTTCTTCACCCC+TGG | 0.447188 | 6_3:+13081558 | None:intergenic |
| AGCCGATATCGGTCTTTCAA+TGG | 0.458474 | 6_3:-13081110 | Msa0940530:CDS |
| AGAGAATGGATTGTTTGTAT+TGG | 0.471349 | 6_3:-13080449 | Msa0940530:CDS |
| TATGGATACATTAGGTGCAT+TGG | 0.476382 | 6_3:-13080852 | Msa0940530:CDS |
| TTCGTAGCCGCGGTTTCAGC+CGG | 0.480048 | 6_3:-13080920 | Msa0940530:CDS |
| GGTCTTTCAATGGGAATTCA+AGG | 0.480265 | 6_3:-13081100 | Msa0940530:CDS |
| TTAACATTGTTAGGGCTTGT+CGG | 0.483188 | 6_3:-13081600 | Msa0940530:CDS |
| GCCGATATCGGTCTTTCAAT+GGG | 0.484090 | 6_3:-13081109 | Msa0940530:CDS |
| TTCTTCACCCCTGGACGACA+TGG | 0.495536 | 6_3:+13081567 | None:intergenic |
| ACAGATGAAACCGTGGTTGA+AGG | 0.498794 | 6_3:-13081307 | Msa0940530:CDS |
| TTGTTAACTCTTCAATTCAA+AGG | 0.499732 | 6_3:-13080704 | Msa0940530:CDS |
| ATTAAGGATCCATGTCGTCC+AGG | 0.505479 | 6_3:-13081576 | Msa0940530:CDS |
| AGCTTCACAACAAAACCAAT+AGG | 0.508970 | 6_3:+13080407 | None:intergenic |
| AGTAGTGGTTTATCTGAGAC+AGG | 0.517777 | 6_3:+13080380 | None:intergenic |
| TGCTGTTAATGGTACTTCAC+CGG | 0.520634 | 6_3:+13080901 | None:intergenic |
| GCATTGAAAGAAGCCGATAT+CGG | 0.523732 | 6_3:-13081121 | Msa0940530:CDS |
| AGAAGTTTGCTGGTACAGAA+AGG | 0.529712 | 6_3:-13080481 | Msa0940530:CDS |
| CTCTTATAACTAACATTATG+TGG | 0.531696 | 6_3:-13080766 | Msa0940530:CDS |
| AAATTGTTCGCCTTCAACCA+CGG | 0.532190 | 6_3:+13081297 | None:intergenic |
| ATATCGGCTTCTTTCAATGC+CGG | 0.532373 | 6_3:+13081124 | None:intergenic |
| GCAGACGAAGAGCTTGGAGA+TGG | 0.537228 | 6_3:-13081657 | Msa0940530:CDS |
| AACTCTTCAATTCAAAGGTG+AGG | 0.539506 | 6_3:-13080699 | Msa0940530:CDS |
| TTAAGGATCCATGTCGTCCA+GGG | 0.540918 | 6_3:-13081575 | Msa0940530:CDS |
| GTAGTTGCTGTAACAGGAGA+TGG | 0.541746 | 6_3:-13081160 | Msa0940530:CDS |
| CATCTGTGTCCTCATTAGAT+CGG | 0.542340 | 6_3:+13081323 | None:intergenic |
| AAAGTCGCAGACGAAGAGCT+TGG | 0.546151 | 6_3:-13081663 | Msa0940530:CDS |
| TGGAATTCTCCGATCTAATG+AGG | 0.552066 | 6_3:-13081332 | Msa0940530:CDS |
| CTCCTGTTACAGCAACTACA+TGG | 0.559264 | 6_3:+13081164 | None:intergenic |
| ATTAGTGCTTCAAGTTGTGA+TGG | 0.571604 | 6_3:-13080516 | Msa0940530:CDS |
| GTGGAAGCTTGCCAACATGC+CGG | 0.573699 | 6_3:-13081540 | Msa0940530:CDS |
| AGATGGAACAAATGATGCAC+CGG | 0.583689 | 6_3:-13081143 | Msa0940530:CDS |
| TACTTCACCGGCTGAAACCG+CGG | 0.586833 | 6_3:+13080913 | None:intergenic |
| TGACATTCACACCGGCATGT+TGG | 0.590504 | 6_3:+13081529 | None:intergenic |
| ATTTCAACTAACAGTGAATG+TGG | 0.603613 | 6_3:-13080960 | Msa0940530:CDS |
| CATTATGTGGAGGAATCTTG+TGG | 0.617402 | 6_3:-13080753 | Msa0940530:CDS |
| TGTTATCAATTTCGTAGCCG+CGG | 0.628690 | 6_3:-13080930 | Msa0940530:CDS |
| AAAGCTATAGCATTTGAATG+TGG | 0.637772 | 6_3:-13081352 | Msa0940530:CDS |
| AGATGGAGACAATAACAAGA+TGG | 0.640541 | 6_3:-13081640 | Msa0940530:CDS |
| TGCAACTGAAAAGCCTACCA+AGG | 0.652731 | 6_3:-13080825 | Msa0940530:CDS |
| TTATAACTAACATTATGTGG+AGG | 0.663994 | 6_3:-13080763 | Msa0940530:CDS |
| TGGAGACAATAACAAGATGG+TGG | 0.664988 | 6_3:-13081637 | Msa0940530:CDS |
| TCGTCCAGGGGTGAAGAAAG+CGG | 0.665154 | 6_3:-13081562 | Msa0940530:CDS |
| TAAGGATCCATGTCGTCCAG+GGG | 0.675223 | 6_3:-13081574 | Msa0940530:CDS |
| TCCAGGGGTGAAGAAAGCGG+TGG | 0.675734 | 6_3:-13081559 | Msa0940530:CDS |
| TGAGGACACAGATGAAACCG+TGG | 0.741833 | 6_3:-13081314 | Msa0940530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATGATTTAACATTGTTA+GGG | - | chr6_3:13080437-13080456 | Msa0940530:CDS | 20.0% |
| !!! | GTTCAATGTTTAAAACAAAA+AGG | - | chr6_3:13080858-13080877 | Msa0940530:CDS | 20.0% |
| !!! | TATAGTAACAGTTTTAAACT+GGG | - | chr6_3:13081025-13081044 | Msa0940530:CDS | 20.0% |
| !! | AATTTGATTATGGATACATT+AGG | - | chr6_3:13081185-13081204 | Msa0940530:CDS | 20.0% |
| !!! | TTTTTTATCCATTAATTCCT+TGG | + | chr6_3:13081240-13081259 | None:intergenic | 20.0% |
| !! | GAGTTAACAAAATTACTATT+TGG | + | chr6_3:13081331-13081350 | None:intergenic | 20.0% |
| !!! | AGAAGAAAAATGTTTTTGAA+GGG | - | chr6_3:13081465-13081484 | Msa0940530:intron | 20.0% |
| !!! | ATTTAGAAGCAAATTGTTTT+TGG | - | chr6_3:13081490-13081509 | Msa0940530:intron | 20.0% |
| !!! | TTTAGAAGCAAATTGTTTTT+GGG | - | chr6_3:13081491-13081510 | Msa0940530:intron | 20.0% |
| !!! | AAATTGTTTTTGGGAATTAT+TGG | - | chr6_3:13081500-13081519 | Msa0940530:intron | 20.0% |
| !! | ACAATGATTTAACATTGTTA+GGG | - | chr6_3:13080437-13080456 | Msa0940530:CDS | 20.0% |
| !!! | GTTCAATGTTTAAAACAAAA+AGG | - | chr6_3:13080858-13080877 | Msa0940530:CDS | 20.0% |
| !!! | TATAGTAACAGTTTTAAACT+GGG | - | chr6_3:13081025-13081044 | Msa0940530:CDS | 20.0% |
| !! | AATTTGATTATGGATACATT+AGG | - | chr6_3:13081185-13081204 | Msa0940530:CDS | 20.0% |
| !!! | TTTTTTATCCATTAATTCCT+TGG | + | chr6_3:13081240-13081259 | None:intergenic | 20.0% |
| !! | GAGTTAACAAAATTACTATT+TGG | + | chr6_3:13081331-13081350 | None:intergenic | 20.0% |
| !!! | AGAAGAAAAATGTTTTTGAA+GGG | - | chr6_3:13081465-13081484 | Msa0940530:intron | 20.0% |
| !!! | ATTTAGAAGCAAATTGTTTT+TGG | - | chr6_3:13081490-13081509 | Msa0940530:intron | 20.0% |
| !!! | TTTAGAAGCAAATTGTTTTT+GGG | - | chr6_3:13081491-13081510 | Msa0940530:intron | 20.0% |
| !!! | AAATTGTTTTTGGGAATTAT+TGG | - | chr6_3:13081500-13081519 | Msa0940530:intron | 20.0% |
| ! | GACAATGATTTAACATTGTT+AGG | - | chr6_3:13080436-13080455 | Msa0940530:CDS | 25.0% |
| ! | ACGAGTCTATATGAAAATAA+TGG | - | chr6_3:13080628-13080647 | Msa0940530:intron | 25.0% |
| !!! | CTATAGTAACAGTTTTAAAC+TGG | - | chr6_3:13081024-13081043 | Msa0940530:CDS | 25.0% |
| !!! | ATAGTAACAGTTTTAAACTG+GGG | - | chr6_3:13081026-13081045 | Msa0940530:CDS | 25.0% |
| ! | AATAATTGTACTGCTGTTAA+TGG | + | chr6_3:13081158-13081177 | None:intergenic | 25.0% |
| ! | TAACAGCAGTACAATTATTA+TGG | - | chr6_3:13081159-13081178 | Msa0940530:CDS | 25.0% |
| ! | AACAGCAGTACAATTATTAT+GGG | - | chr6_3:13081160-13081179 | Msa0940530:CDS | 25.0% |
| ! | ATTATGGGTCAATTTGATTA+TGG | - | chr6_3:13081175-13081194 | Msa0940530:CDS | 25.0% |
| !! | TTAATGGATAAAAAACCAGT+TGG | - | chr6_3:13081245-13081264 | Msa0940530:CDS | 25.0% |
| ! | CACATAATGTTAGTTATAAG+AGG | + | chr6_3:13081281-13081300 | None:intergenic | 25.0% |
| ! | CTCTTATAACTAACATTATG+TGG | - | chr6_3:13081279-13081298 | Msa0940530:CDS | 25.0% |
| ! | TTATAACTAACATTATGTGG+AGG | - | chr6_3:13081282-13081301 | Msa0940530:CDS | 25.0% |
| ! | TTGTTAACTCTTCAATTCAA+AGG | - | chr6_3:13081341-13081360 | Msa0940530:CDS | 25.0% |
| ! | TGTTTAATGAGTTTAATGCA+AGG | - | chr6_3:13081435-13081454 | Msa0940530:intron | 25.0% |
| !!! | GAGAAGAAAAATGTTTTTGA+AGG | - | chr6_3:13081464-13081483 | Msa0940530:intron | 25.0% |
| ! | ATACTCAAAAAATCAAGTAG+TGG | + | chr6_3:13081683-13081702 | None:intergenic | 25.0% |
| ! | GACAATGATTTAACATTGTT+AGG | - | chr6_3:13080436-13080455 | Msa0940530:CDS | 25.0% |
| ! | ACGAGTCTATATGAAAATAA+TGG | - | chr6_3:13080628-13080647 | Msa0940530:intron | 25.0% |
| !!! | CTATAGTAACAGTTTTAAAC+TGG | - | chr6_3:13081024-13081043 | Msa0940530:CDS | 25.0% |
| !!! | ATAGTAACAGTTTTAAACTG+GGG | - | chr6_3:13081026-13081045 | Msa0940530:CDS | 25.0% |
| ! | AATAATTGTACTGCTGTTAA+TGG | + | chr6_3:13081158-13081177 | None:intergenic | 25.0% |
| ! | TAACAGCAGTACAATTATTA+TGG | - | chr6_3:13081159-13081178 | Msa0940530:CDS | 25.0% |
| ! | AACAGCAGTACAATTATTAT+GGG | - | chr6_3:13081160-13081179 | Msa0940530:CDS | 25.0% |
| ! | ATTATGGGTCAATTTGATTA+TGG | - | chr6_3:13081175-13081194 | Msa0940530:CDS | 25.0% |
| !! | TTAATGGATAAAAAACCAGT+TGG | - | chr6_3:13081245-13081264 | Msa0940530:CDS | 25.0% |
| ! | CACATAATGTTAGTTATAAG+AGG | + | chr6_3:13081281-13081300 | None:intergenic | 25.0% |
| ! | CTCTTATAACTAACATTATG+TGG | - | chr6_3:13081279-13081298 | Msa0940530:CDS | 25.0% |
| ! | TTATAACTAACATTATGTGG+AGG | - | chr6_3:13081282-13081301 | Msa0940530:CDS | 25.0% |
| ! | TTGTTAACTCTTCAATTCAA+AGG | - | chr6_3:13081341-13081360 | Msa0940530:CDS | 25.0% |
| ! | TGTTTAATGAGTTTAATGCA+AGG | - | chr6_3:13081435-13081454 | Msa0940530:intron | 25.0% |
| !!! | GAGAAGAAAAATGTTTTTGA+AGG | - | chr6_3:13081464-13081483 | Msa0940530:intron | 25.0% |
| ! | ATACTCAAAAAATCAAGTAG+TGG | + | chr6_3:13081683-13081702 | None:intergenic | 25.0% |
| !! | AATCATTTTGACATTCACAC+CGG | + | chr6_3:13080527-13080546 | None:intergenic | 30.0% |
| GTGAATGTCAAAATGATTAC+AGG | - | chr6_3:13080529-13080548 | Msa0940530:CDS | 30.0% | |
| AGACTCGTATGTATAAATAG+AGG | + | chr6_3:13080616-13080635 | None:intergenic | 30.0% | |
| CGAACTTTATCTCTGATTAT+AGG | - | chr6_3:13080651-13080670 | Msa0940530:intron | 30.0% | |
| AAAGCTATAGCATTTGAATG+TGG | - | chr6_3:13080693-13080712 | Msa0940530:CDS | 30.0% | |
| AGTCGAAAAAATATCTGTGA+TGG | - | chr6_3:13080803-13080822 | Msa0940530:CDS | 30.0% | |
| TCCATTTGACAAACTTCTAA+TGG | - | chr6_3:13080836-13080855 | Msa0940530:CDS | 30.0% | |
| ACCATTAGAAGTTTGTCAAA+TGG | + | chr6_3:13080840-13080859 | None:intergenic | 30.0% | |
| CATTCACTGTTAGTTGAAAT+TGG | + | chr6_3:13081085-13081104 | None:intergenic | 30.0% | |
| ATTTCAACTAACAGTGAATG+TGG | - | chr6_3:13081085-13081104 | Msa0940530:CDS | 30.0% | |
| TTATCCATTAATTCCTTGGT+AGG | + | chr6_3:13081236-13081255 | None:intergenic | 30.0% | |
| ! | TTCAAAGGTGAGGATATTTT+TGG | - | chr6_3:13081356-13081375 | Msa0940530:CDS | 30.0% |
| !!! | TATTTTTGGTGTGACATCAA+AGG | - | chr6_3:13081370-13081389 | Msa0940530:CDS | 30.0% |
| TGAGTTTAATGCAAGGAAAT+AGG | - | chr6_3:13081442-13081461 | Msa0940530:intron | 30.0% | |
| !! | AGAGAATGGATTGTTTGTAT+TGG | - | chr6_3:13081596-13081615 | Msa0940530:CDS | 30.0% |
| !!! | TGGATTGTTTGTATTGGTTT+TGG | - | chr6_3:13081602-13081621 | Msa0940530:CDS | 30.0% |
| !! | AATCATTTTGACATTCACAC+CGG | + | chr6_3:13080527-13080546 | None:intergenic | 30.0% |
| GTGAATGTCAAAATGATTAC+AGG | - | chr6_3:13080529-13080548 | Msa0940530:CDS | 30.0% | |
| AGACTCGTATGTATAAATAG+AGG | + | chr6_3:13080616-13080635 | None:intergenic | 30.0% | |
| CGAACTTTATCTCTGATTAT+AGG | - | chr6_3:13080651-13080670 | Msa0940530:intron | 30.0% | |
| AAAGCTATAGCATTTGAATG+TGG | - | chr6_3:13080693-13080712 | Msa0940530:CDS | 30.0% | |
| AGTCGAAAAAATATCTGTGA+TGG | - | chr6_3:13080803-13080822 | Msa0940530:CDS | 30.0% | |
| TCCATTTGACAAACTTCTAA+TGG | - | chr6_3:13080836-13080855 | Msa0940530:CDS | 30.0% | |
| ACCATTAGAAGTTTGTCAAA+TGG | + | chr6_3:13080840-13080859 | None:intergenic | 30.0% | |
| CATTCACTGTTAGTTGAAAT+TGG | + | chr6_3:13081085-13081104 | None:intergenic | 30.0% | |
| ATTTCAACTAACAGTGAATG+TGG | - | chr6_3:13081085-13081104 | Msa0940530:CDS | 30.0% | |
| TTATCCATTAATTCCTTGGT+AGG | + | chr6_3:13081236-13081255 | None:intergenic | 30.0% | |
| ! | TTCAAAGGTGAGGATATTTT+TGG | - | chr6_3:13081356-13081375 | Msa0940530:CDS | 30.0% |
| !!! | TATTTTTGGTGTGACATCAA+AGG | - | chr6_3:13081370-13081389 | Msa0940530:CDS | 30.0% |
| TGAGTTTAATGCAAGGAAAT+AGG | - | chr6_3:13081442-13081461 | Msa0940530:intron | 30.0% | |
| !! | AGAGAATGGATTGTTTGTAT+TGG | - | chr6_3:13081596-13081615 | Msa0940530:CDS | 30.0% |
| !!! | TGGATTGTTTGTATTGGTTT+TGG | - | chr6_3:13081602-13081621 | Msa0940530:CDS | 30.0% |
| AGATGGAGACAATAACAAGA+TGG | - | chr6_3:13080405-13080424 | Msa0940530:CDS | 35.0% | |
| TTAACATTGTTAGGGCTTGT+CGG | - | chr6_3:13080445-13080464 | Msa0940530:CDS | 35.0% | |
| TATGGATACATTAGGTGCAT+TGG | - | chr6_3:13081193-13081212 | Msa0940530:CDS | 35.0% | |
| AAAGCCTACCAAGGAATTAA+TGG | - | chr6_3:13081229-13081248 | Msa0940530:CDS | 35.0% | |
| AACTCTTCAATTCAAAGGTG+AGG | - | chr6_3:13081346-13081365 | Msa0940530:CDS | 35.0% | |
| !! | ATTAGTGCTTCAAGTTGTGA+TGG | - | chr6_3:13081529-13081548 | Msa0940530:CDS | 35.0% |
| !! | GAGTTTTTGAAGAAGTTTGC+TGG | - | chr6_3:13081554-13081573 | Msa0940530:CDS | 35.0% |
| AAAGGTTGAATTGGAGAGAA+TGG | - | chr6_3:13081582-13081601 | Msa0940530:CDS | 35.0% | |
| AGCTTCACAACAAAACCAAT+AGG | + | chr6_3:13081641-13081660 | None:intergenic | 35.0% | |
| AGATGGAGACAATAACAAGA+TGG | - | chr6_3:13080405-13080424 | Msa0940530:CDS | 35.0% | |
| TTAACATTGTTAGGGCTTGT+CGG | - | chr6_3:13080445-13080464 | Msa0940530:CDS | 35.0% | |
| TATGGATACATTAGGTGCAT+TGG | - | chr6_3:13081193-13081212 | Msa0940530:CDS | 35.0% | |
| AAAGCCTACCAAGGAATTAA+TGG | - | chr6_3:13081229-13081248 | Msa0940530:CDS | 35.0% | |
| AACTCTTCAATTCAAAGGTG+AGG | - | chr6_3:13081346-13081365 | Msa0940530:CDS | 35.0% | |
| !! | ATTAGTGCTTCAAGTTGTGA+TGG | - | chr6_3:13081529-13081548 | Msa0940530:CDS | 35.0% |
| !! | GAGTTTTTGAAGAAGTTTGC+TGG | - | chr6_3:13081554-13081573 | Msa0940530:CDS | 35.0% |
| AAAGGTTGAATTGGAGAGAA+TGG | - | chr6_3:13081582-13081601 | Msa0940530:CDS | 35.0% | |
| AGCTTCACAACAAAACCAAT+AGG | + | chr6_3:13081641-13081660 | None:intergenic | 35.0% | |
| TGGAGACAATAACAAGATGG+TGG | - | chr6_3:13080408-13080427 | Msa0940530:CDS | 40.0% | |
| TGGAATTCTCCGATCTAATG+AGG | - | chr6_3:13080713-13080732 | Msa0940530:CDS | 40.0% | |
| CATCTGTGTCCTCATTAGAT+CGG | + | chr6_3:13080725-13080744 | None:intergenic | 40.0% | |
| AAATTGTTCGCCTTCAACCA+CGG | + | chr6_3:13080751-13080770 | None:intergenic | 40.0% | |
| AGATGGAACAAATGATGCAC+CGG | - | chr6_3:13080902-13080921 | Msa0940530:CDS | 40.0% | |
| !! | ATATCGGCTTCTTTCAATGC+CGG | + | chr6_3:13080924-13080943 | None:intergenic | 40.0% |
| GCATTGAAAGAAGCCGATAT+CGG | - | chr6_3:13080924-13080943 | Msa0940530:CDS | 40.0% | |
| TCCCATTGAAAGACCGATAT+CGG | + | chr6_3:13080940-13080959 | None:intergenic | 40.0% | |
| GGTCTTTCAATGGGAATTCA+AGG | - | chr6_3:13080945-13080964 | Msa0940530:CDS | 40.0% | |
| TGTTATCAATTTCGTAGCCG+CGG | - | chr6_3:13081115-13081134 | Msa0940530:CDS | 40.0% | |
| TGCTGTTAATGGTACTTCAC+CGG | + | chr6_3:13081147-13081166 | None:intergenic | 40.0% | |
| CATTATGTGGAGGAATCTTG+TGG | - | chr6_3:13081292-13081311 | Msa0940530:CDS | 40.0% | |
| !! | AGAAGTTTGCTGGTACAGAA+AGG | - | chr6_3:13081564-13081583 | Msa0940530:CDS | 40.0% |
| CTGGTACAGAAAGGTTGAAT+TGG | - | chr6_3:13081573-13081592 | Msa0940530:CDS | 40.0% | |
| !!! | TTGGTTTTGGTGCTGTTTCT+TGG | - | chr6_3:13081615-13081634 | Msa0940530:CDS | 40.0% |
| ! | AGTAGTGGTTTATCTGAGAC+AGG | + | chr6_3:13081668-13081687 | None:intergenic | 40.0% |
| TGGAGACAATAACAAGATGG+TGG | - | chr6_3:13080408-13080427 | Msa0940530:CDS | 40.0% | |
| TGGAATTCTCCGATCTAATG+AGG | - | chr6_3:13080713-13080732 | Msa0940530:CDS | 40.0% | |
| CATCTGTGTCCTCATTAGAT+CGG | + | chr6_3:13080725-13080744 | None:intergenic | 40.0% | |
| AAATTGTTCGCCTTCAACCA+CGG | + | chr6_3:13080751-13080770 | None:intergenic | 40.0% | |
| AGATGGAACAAATGATGCAC+CGG | - | chr6_3:13080902-13080921 | Msa0940530:CDS | 40.0% | |
| !! | ATATCGGCTTCTTTCAATGC+CGG | + | chr6_3:13080924-13080943 | None:intergenic | 40.0% |
| GCATTGAAAGAAGCCGATAT+CGG | - | chr6_3:13080924-13080943 | Msa0940530:CDS | 40.0% | |
| TCCCATTGAAAGACCGATAT+CGG | + | chr6_3:13080940-13080959 | None:intergenic | 40.0% | |
| GGTCTTTCAATGGGAATTCA+AGG | - | chr6_3:13080945-13080964 | Msa0940530:CDS | 40.0% | |
| TGTTATCAATTTCGTAGCCG+CGG | - | chr6_3:13081115-13081134 | Msa0940530:CDS | 40.0% | |
| TGCTGTTAATGGTACTTCAC+CGG | + | chr6_3:13081147-13081166 | None:intergenic | 40.0% | |
| CATTATGTGGAGGAATCTTG+TGG | - | chr6_3:13081292-13081311 | Msa0940530:CDS | 40.0% | |
| !! | AGAAGTTTGCTGGTACAGAA+AGG | - | chr6_3:13081564-13081583 | Msa0940530:CDS | 40.0% |
| CTGGTACAGAAAGGTTGAAT+TGG | - | chr6_3:13081573-13081592 | Msa0940530:CDS | 40.0% | |
| !!! | TTGGTTTTGGTGCTGTTTCT+TGG | - | chr6_3:13081615-13081634 | Msa0940530:CDS | 40.0% |
| ! | AGTAGTGGTTTATCTGAGAC+AGG | + | chr6_3:13081668-13081687 | None:intergenic | 40.0% |
| GTTAGGGCTTGTCGGTATTA+AGG | - | chr6_3:13080453-13080472 | Msa0940530:CDS | 45.0% | |
| ATTAAGGATCCATGTCGTCC+AGG | - | chr6_3:13080469-13080488 | Msa0940530:CDS | 45.0% | |
| TTAAGGATCCATGTCGTCCA+GGG | - | chr6_3:13080470-13080489 | Msa0940530:CDS | 45.0% | |
| ACAGATGAAACCGTGGTTGA+AGG | - | chr6_3:13080738-13080757 | Msa0940530:CDS | 45.0% | |
| CTCCTGTTACAGCAACTACA+TGG | + | chr6_3:13080884-13080903 | None:intergenic | 45.0% | |
| GTAGTTGCTGTAACAGGAGA+TGG | - | chr6_3:13080885-13080904 | Msa0940530:CDS | 45.0% | |
| AGCCGATATCGGTCTTTCAA+TGG | - | chr6_3:13080935-13080954 | Msa0940530:CDS | 45.0% | |
| GCCGATATCGGTCTTTCAAT+GGG | - | chr6_3:13080936-13080955 | Msa0940530:CDS | 45.0% | |
| TGCAACTGAAAAGCCTACCA+AGG | - | chr6_3:13081220-13081239 | Msa0940530:CDS | 45.0% | |
| !! | AGAGGCTTTGTTCTACCAAC+TGG | + | chr6_3:13081263-13081282 | None:intergenic | 45.0% |
| GTTAGGGCTTGTCGGTATTA+AGG | - | chr6_3:13080453-13080472 | Msa0940530:CDS | 45.0% | |
| ATTAAGGATCCATGTCGTCC+AGG | - | chr6_3:13080469-13080488 | Msa0940530:CDS | 45.0% | |
| TTAAGGATCCATGTCGTCCA+GGG | - | chr6_3:13080470-13080489 | Msa0940530:CDS | 45.0% | |
| ACAGATGAAACCGTGGTTGA+AGG | - | chr6_3:13080738-13080757 | Msa0940530:CDS | 45.0% | |
| CTCCTGTTACAGCAACTACA+TGG | + | chr6_3:13080884-13080903 | None:intergenic | 45.0% | |
| GTAGTTGCTGTAACAGGAGA+TGG | - | chr6_3:13080885-13080904 | Msa0940530:CDS | 45.0% | |
| AGCCGATATCGGTCTTTCAA+TGG | - | chr6_3:13080935-13080954 | Msa0940530:CDS | 45.0% | |
| GCCGATATCGGTCTTTCAAT+GGG | - | chr6_3:13080936-13080955 | Msa0940530:CDS | 45.0% | |
| TGCAACTGAAAAGCCTACCA+AGG | - | chr6_3:13081220-13081239 | Msa0940530:CDS | 45.0% | |
| !! | AGAGGCTTTGTTCTACCAAC+TGG | + | chr6_3:13081263-13081282 | None:intergenic | 45.0% |
| AAAGTCGCAGACGAAGAGCT+TGG | - | chr6_3:13080382-13080401 | Msa0940530:CDS | 50.0% | |
| TAAGGATCCATGTCGTCCAG+GGG | - | chr6_3:13080471-13080490 | Msa0940530:CDS | 50.0% | |
| TGACATTCACACCGGCATGT+TGG | + | chr6_3:13080519-13080538 | None:intergenic | 50.0% | |
| TGAGGACACAGATGAAACCG+TGG | - | chr6_3:13080731-13080750 | Msa0940530:CDS | 50.0% | |
| GGCCATGTAGTTGCTGTAAC+AGG | - | chr6_3:13080879-13080898 | Msa0940530:CDS | 50.0% | |
| !! | GGTGCTGTTTCTTGGCCTAT+TGG | - | chr6_3:13081623-13081642 | Msa0940530:CDS | 50.0% |
| AAAGTCGCAGACGAAGAGCT+TGG | - | chr6_3:13080382-13080401 | Msa0940530:CDS | 50.0% | |
| TAAGGATCCATGTCGTCCAG+GGG | - | chr6_3:13080471-13080490 | Msa0940530:CDS | 50.0% | |
| TGACATTCACACCGGCATGT+TGG | + | chr6_3:13080519-13080538 | None:intergenic | 50.0% | |
| TGAGGACACAGATGAAACCG+TGG | - | chr6_3:13080731-13080750 | Msa0940530:CDS | 50.0% | |
| GGCCATGTAGTTGCTGTAAC+AGG | - | chr6_3:13080879-13080898 | Msa0940530:CDS | 50.0% | |
| !! | GGTGCTGTTTCTTGGCCTAT+TGG | - | chr6_3:13081623-13081642 | Msa0940530:CDS | 50.0% |
| GCAGACGAAGAGCTTGGAGA+TGG | - | chr6_3:13080388-13080407 | Msa0940530:CDS | 55.0% | |
| TTCTTCACCCCTGGACGACA+TGG | + | chr6_3:13080481-13080500 | None:intergenic | 55.0% | |
| TCGTCCAGGGGTGAAGAAAG+CGG | - | chr6_3:13080483-13080502 | Msa0940530:CDS | 55.0% | |
| GTGGAAGCTTGCCAACATGC+CGG | - | chr6_3:13080505-13080524 | Msa0940530:CDS | 55.0% | |
| ! | TACTTCACCGGCTGAAACCG+CGG | + | chr6_3:13081135-13081154 | None:intergenic | 55.0% |
| GCAGACGAAGAGCTTGGAGA+TGG | - | chr6_3:13080388-13080407 | Msa0940530:CDS | 55.0% | |
| TTCTTCACCCCTGGACGACA+TGG | + | chr6_3:13080481-13080500 | None:intergenic | 55.0% | |
| TCGTCCAGGGGTGAAGAAAG+CGG | - | chr6_3:13080483-13080502 | Msa0940530:CDS | 55.0% | |
| GTGGAAGCTTGCCAACATGC+CGG | - | chr6_3:13080505-13080524 | Msa0940530:CDS | 55.0% | |
| ! | TACTTCACCGGCTGAAACCG+CGG | + | chr6_3:13081135-13081154 | None:intergenic | 55.0% |
| TCCAGGGGTGAAGAAAGCGG+TGG | - | chr6_3:13080486-13080505 | Msa0940530:CDS | 60.0% | |
| TCCACCGCTTTCTTCACCCC+TGG | + | chr6_3:13080490-13080509 | None:intergenic | 60.0% | |
| TTCGTAGCCGCGGTTTCAGC+CGG | - | chr6_3:13081125-13081144 | Msa0940530:CDS | 60.0% | |
| TCCAGGGGTGAAGAAAGCGG+TGG | - | chr6_3:13080486-13080505 | Msa0940530:CDS | 60.0% | |
| TCCACCGCTTTCTTCACCCC+TGG | + | chr6_3:13080490-13080509 | None:intergenic | 60.0% | |
| TTCGTAGCCGCGGTTTCAGC+CGG | - | chr6_3:13081125-13081144 | Msa0940530:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 13080340 | 13081727 | 13080340 | ID=Msa0940530;Name=Msa0940530 |
| chr6_3 | mRNA | 13080340 | 13081727 | 13080340 | ID=Msa0940530-mRNA-1;Parent=Msa0940530;Name=Msa0940530-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0|1|1|1|3|0|397 |
| chr6_3 | exon | 13081517 | 13081727 | 13081517 | ID=Msa0940530-mRNA-1:exon:4248;Parent=Msa0940530-mRNA-1 |
| chr6_3 | exon | 13080676 | 13081394 | 13080676 | ID=Msa0940530-mRNA-1:exon:4247;Parent=Msa0940530-mRNA-1 |
| chr6_3 | exon | 13080340 | 13080603 | 13080340 | ID=Msa0940530-mRNA-1:exon:4246;Parent=Msa0940530-mRNA-1 |
| chr6_3 | CDS | 13081517 | 13081727 | 13081517 | ID=Msa0940530-mRNA-1:cds;Parent=Msa0940530-mRNA-1 |
| chr6_3 | CDS | 13080676 | 13081394 | 13080676 | ID=Msa0940530-mRNA-1:cds;Parent=Msa0940530-mRNA-1 |
| chr6_3 | CDS | 13080340 | 13080603 | 13080340 | ID=Msa0940530-mRNA-1:cds;Parent=Msa0940530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
